* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2012-12-28 19:19 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2012-12-28 19:19 UTC (permalink / raw
To: gentoo-commits
commit: 5a943c6e03b67dc35df1700cb8354ec20630bf25
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Dec 28 19:18:59 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Dec 28 19:18:59 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5a943c6e
sci-biology/ncbi-tools++-9.0.0: a sketch of an updated ebuild, bug #279606, does not pass repoman checks due to IUSE items
---
sci-biology/ncbi-tools++/files/curl-types.patch | 24 ++
.../files/disable-testsuite-compilation.txt | 3 +
.../files/malloc_initialize_upstream_fix.patch | 100 +++++++
.../ncbi-tools++-9.0.0-disable_test_compress.patch | 15 +
.../ncbi-tools++-9.0.0-fix-order-of-libs.patch | 24 ++
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 304 ++++++++++++++++++++
6 files changed, 470 insertions(+), 0 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/curl-types.patch b/sci-biology/ncbi-tools++/files/curl-types.patch
new file mode 100644
index 0000000..3e60790
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/curl-types.patch
@@ -0,0 +1,24 @@
+Index: libs/kns/url-fetcher-curl.c
+===================================================================
+--- src/sra/sdk/libs/kns/url-fetcher-curl.c (revision 11878)
++++ src/sra/sdk/libs/kns/url-fetcher-curl.c (revision 11880)
+@@ -38,7 +38,6 @@
+ #include <string.h>
+
+ #include <curl/curl.h>
+-#include <curl/types.h>
+ #include <curl/easy.h>
+
+ /*--------------------------------------------------------------------------
+Index: tools/refseq-load/refseq-load.c
+===================================================================
+--- src/sra/sdk/tools/refseq-load/refseq-load.c (revision 11878)
++++ src/sra/sdk/tools/refseq-load/refseq-load.c (revision 11880)
+@@ -41,7 +41,6 @@
+ #include <sysalloc.h>
+
+ #include <curl/curl.h>
+-#include <curl/types.h>
+ #include <curl/easy.h>
+
+ #include <stdlib.h>
diff --git a/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt b/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
new file mode 100644
index 0000000..aeaf75e
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
@@ -0,0 +1,3 @@
+.*
+-.*/test
+-.*/unit_test
diff --git a/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch b/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch
new file mode 100644
index 0000000..4900e52
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch
@@ -0,0 +1,100 @@
+--- trunk/c++/src/app/netcache/nc_memory.cpp 2011/12/16 17:42:54 52330
++++ trunk/c++/src/app/netcache/nc_memory.cpp 2012/02/27 14:38:30 53136
+@@ -360,7 +360,7 @@
+ m_ObjLock.Lock();
+ ++m_SysFrees;
+ m_SystemMem -= alloced_size;
+- m_LostMem -= alloced_size -= asked_size;
++ m_LostMem -= alloced_size - asked_size;
+ m_ObjLock.Unlock();
+ }
+
+@@ -2539,7 +2539,7 @@
+ bool
+ CNCMemManager::InitializeApp(void)
+ {
+- try {
++ /*try {
+ CSQLITE_Global::SetCustomMallocFuncs(&s_NCMallocMethods);
+ }
+ catch (CSQLITE_Exception& ex) {
+@@ -2547,13 +2547,15 @@
+ return false;
+ }
+
+- return CNCMMCentral::RunLateInit();
++ return CNCMMCentral::RunLateInit();*/
++ g_InitNCThreadIndexes();
++ return true;
+ }
+
+ void
+ CNCMemManager::FinalizeApp(void)
+ {
+- CNCMMCentral::PrepareToStop();
++ //CNCMMCentral::PrepareToStop();
+ }
+
+ void
+@@ -2571,28 +2573,29 @@
+ void
+ CNCMemManager::PrintStats(CPrintTextProxy& proxy)
+ {
+- CNCMMStats stats_sum;
++ /*CNCMMStats stats_sum;
+ CNCMMStats::CollectAllStats(&stats_sum);
+- stats_sum.Print(proxy);
++ stats_sum.Print(proxy);*/
+ }
+
+ size_t
+ CNCMemManager::GetMemoryLimit(void)
+ {
+- return CNCMMCentral::GetMemLimit();
++ return 0;//CNCMMCentral::GetMemLimit();
+ }
+
+ size_t
+ CNCMemManager::GetMemoryUsed(void)
+ {
+- CNCMMStats stat;
++ /*CNCMMStats stat;
+ CNCMMStats::CollectAllStats(&stat);
+- return stat.GetSystemMem();
++ return stat.GetSystemMem();*/
++ return 0;
+ }
+
+ END_NCBI_SCOPE
+
+-
++/*
+ void*
+ operator new (size_t size)
+ #ifndef NCBI_COMPILER_MSVC
+@@ -2626,13 +2629,13 @@
+ {
+ NCBI_NS_NCBI::CNCMMCentral::DeallocMemory(ptr);
+ }
+-
++*/
+ #ifdef __GLIBC__
+ // glibc has special method of overriding C library allocation functions.
+
+ #include <malloc.h>
+
+-
++/*
+ void* s_NCMallocHook(size_t size, const void* caller)
+ {
+ return NCBI_NS_NCBI::CNCMMCentral::AllocMemory(size);
+@@ -2656,7 +2659,7 @@
+ }
+
+ void (*__malloc_initialize_hook) (void) = s_NCInitMallocHook;
+-
++*/
+ #elif !defined(NCBI_OS_MSWIN)
+ // Changing of C library allocation functions on Windows is very tricky (if
+ // possible at all) and NetCache will never run in production on Windows. So
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-disable_test_compress.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-disable_test_compress.patch
new file mode 100644
index 0000000..d379806
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-disable_test_compress.patch
@@ -0,0 +1,15 @@
+--- src/util/test/Makefile.in.ori 2012-12-21 14:26:16.000000000 +0100
++++ src/util/test/Makefile.in 2012-12-21 14:26:26.000000000 +0100
+@@ -4,10 +4,10 @@
+ #################################
+
+ APP_PROJ = test_utf8 test_rangemap test_resize_iter \
+- test_logrotate test_regexp test_compress test_checksum \
++ test_logrotate test_regexp test_checksum \
+ test_staticmap test_strsearch test_table test_tar \
+ test_transmissionrw test_align \
+- test_cache_mt test_id_mux test_compress_mt test_thread_pool \
++ test_cache_mt test_id_mux test_thread_pool \
+ test_uttp test_line_reader test_queue_mt test_thread_pool_old \
+ test_scheduler test_value_convert example_value_convert \
+ formatguess_unit_test test_floating_point_comparison \
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-order-of-libs.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-order-of-libs.patch
new file mode 100644
index 0000000..84a544e
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-order-of-libs.patch
@@ -0,0 +1,24 @@
+Index: Makefile.test_compress.app
+===================================================================
+--- src/util/test/Makefile.test_compress.app (revision 356584)
++++ src/util/test/Makefile.test_compress.app (working copy)
+@@ -3,7 +3,7 @@
+
+ APP = test_compress
+ SRC = test_compress
+-LIB = xutil xcompress $(CMPRS_LIB) xncbi
++LIB = xcompress xutil $(CMPRS_LIB) xncbi
+ LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
+
+--- src/util/test/Makefile.test_compress_mt.app.ori 2012-12-21 16:12:11.000000000 +0100
++++ src/util/test/Makefile.test_compress_mt.app 2012-12-21 16:12:41.000000000 +0100
+@@ -3,7 +3,7 @@
+
+ APP = test_compress_mt
+ SRC = test_compress_mt
+-LIB = xutil xcompress $(CMPRS_LIB) test_mt xncbi
++LIB = xcompress xutil $(CMPRS_LIB) test_mt xncbi
+ LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
new file mode 100644
index 0000000..e2950be
--- /dev/null
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
@@ -0,0 +1,304 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild,v 1.3 2012/11/05 11:22:49 jlec Exp $
+
+EAPI="3"
+
+inherit eutils flag-o-matic multilib toolchain-funcs
+
+MY_TAG="Jun_15_2010"
+MY_Y="${MY_TAG/*_/}"
+MY_PV="9_0_0"
+MY_P="ncbi_cxx--${MY_PV}"
+#ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz
+
+
+DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
+SRC_URI="
+ ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
+# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
+
+LICENSE="public-domain"
+SLOT="0"
+IUSE="berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X"
+#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS=""
+
+# sys-libs/db should be compiled with USE=cxx
+DEPEND="berkdb? ( sys-libs/db:4.3 )
+ ftds? ( dev-db/freetds )
+ boost? ( dev-libs/boost )
+ curl? ( net-misc/curl )
+ sqlite? ( dev-db/sqlite:2 )
+ sqlite3? ( dev-db/sqlite:3 )
+ mysql? ( virtual/mysql )
+ gnutls? ( net-libs/gnutls )
+ ssl? ( dev-libs/openssl )
+ fltk? ( x11-libs/fltk )
+ opengl? ( virtual/opengl )
+ mesa? ( media-libs/mesa )
+ glut? ( media-libs/freeglut )
+ freetype? ( media-libs/freetype )
+ fastcgi? ( www-apache/mod_fastcgi )
+ python? ( dev-lang/python )
+ cppunit? ( dev-util/cppunit )
+ icu? ( dev-libs/icu )
+ expat? ( dev-libs/expat )
+ sablotron? ( app-text/sablotron )
+ xml? ( dev-libs/libxml2 )
+ xslt? ( dev-libs/libxslt )
+ xerces? ( dev-libs/xerces-c )
+ xalan? ( dev-libs/xalan-c )
+ muparser? ( dev-cpp/muParser )
+ hdf5? ( sci-libs/hdf5 )
+ gif? ( media-libs/giflib )
+ jpeg? ( virtual/jpeg )
+ png? ( media-libs/libpng )
+ tiff? ( media-libs/tiff )
+ xpm? ( x11-libs/libXpm )
+ dev-libs/lzo
+ app-arch/bzip2
+ dev-libs/libpcre"
+# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
+
+# configure options, may want to expose some
+# --without-debug build non-debug versions of libs and apps
+# --without-optimization turn off optimization flags in non-debug mode
+# --with-profiling build profiled versions of libs and apps
+# --with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
+# --with-dll build all libraries as DLLs
+# --with-static build all libraries statically even if --with-dll
+# --with-static-exe build all executables as statically as possible
+# --with-plugin-auto-load always enable the plugin manager by default
+# --with-bin-release build executables suitable for public release
+# --with-mt compile in a MultiThread-safe manner
+# --with-64 compile to 64-bit code
+# --with-universal build universal binaries on Mac OS X
+# --with-universal=CPUs build universal binaries targeting the given CPUs
+# --without-exe do not build executables
+# --with-runpath= hard-code the runtime path to DLLs
+# --with-lfs enable large file support to the extent possible
+# --with-extra-action= script to call after the configuration is complete
+# --with-autodep automatic generation of dependencies (GNU make)
+# --with-build-root=DIR specify a non-default build directory name
+# --with-fake-root=DIR appear to have been built under DIR
+# --without-suffix no Release/Debug, MT or DLL sfx in the build dir name
+# --with-hostspec add full host specs to the build dir name
+# --without-version don't always include the cplr ver in the bd name
+# --with-build-root-sfx=X add a user-specified suffix to the build dir name
+# --without-execopy do not copy built executables to the BIN area
+# --with-bincopy populate lib and bin with copies, not hard links
+# --with-lib-rebuilds ensure that apps use up-to-date libraries
+# --with-lib-rebuilds=ask ask whether to update each app's libraries
+# --without-deactivation keep old copies of libraries that no longer build
+# --without-makefile-auto-update do not auto-update generated makefiles
+# --with-projects=FILE build projects listed in FILE by default
+# --without-flat-makefile do not generate an all-encompassing flat makefile
+# --with-configure-dialog allow interactive flat makefile project selection
+# --with-saved-settings=F load configuration settings from the file F
+# --with-check run test suite after the build
+# --with-check-tools=... use the specified tools for testing
+# --with-ncbi-public ensure compatibility for all in-house platforms
+# --with-strip strip binaries at build time
+# --with-pch use precompiled headers if possible
+# --with-caution cancel configuration unconditionally when in doubt
+# --without-caution proceed without asking when in doubt
+# --without-ccache do not automatically use ccache if available
+# --without-distcc do not automatically use distcc if available
+# --without-ncbi-c do not use NCBI C Toolkit
+# --without-sss do not use NCBI SSS libraries
+# --without-utils do not use NCBI SSS UTIL library
+# --without-sssdb do not use NCBI SSS DB library
+# --with-included-sss use the in-tree copy of SSS
+
+# --without-local-lbsm turn off support for IPC with locally running LBSMD
+# --without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
+# --without-connext do not build non-public CONNECT library extensions
+# --without-serial do not build the serialization library and tools
+# --without-objects do not generate/build serializeable objects from ASNs
+# --without-dbapi do not build database connectivity libraries
+# --without-app do not build standalone applications like ID1_FETCH
+# --without-ctools do not build NCBI C Toolkit based projects
+# --without-gui do not build most graphical projects
+# --without-algo do not build CPU-intensive algorithms
+# --without-internal do not build internal projects
+# --with-gbench ensure that Genome Workbench can be built
+# --without-gbench do not build Genome Workbench
+
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+# filter-ldflags -Wl,--as-needed
+# append-ldflags -Wl,--no-undefined
+ sed -i -e 's/-print-file-name=libstdc++.a//' \
+ -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
+ src/build-system/configure || die
+ epatch \
+ "${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
+ "${FILESDIR}"/curl-types.patch \
+ "${FILESDIR}"/malloc_initialize_upstream_fix.patch
+
+# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
+
+
+# "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \
+# "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \
+# "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \
+# "${FILESDIR}"/${PN}-${PV#0.}-libpng15.patch \
+# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
+
+ use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
+}
+
+src_configure() {
+ tc-export CXX CC
+ # the use flag test below are for those which allow to enable or disable the package usage (unlike those cases which either allow or not use of internal, built-in copy of some mostly library, e.g. zlib, boost)
+# conf check for sqlite and mysql
+ local myconf=""
+ if use berkdb; then
+ myconf="--with-bdb"
+ else
+ myconf="--without-bdb"
+ fi
+ if ! use curl; then
+ myconf="--without-curl"
+ fi
+ if use ftds; then
+ myconf="--with-ftds"
+ else
+ myconf="--without-ftds"
+ fi
+ if use gnutls; then
+ myconf="--with-gnutls"
+ else
+ myconf="--without-gnutls"
+ fi
+ if use ssl; then
+ myconf="--with-openssl"
+ else
+ myconf="--without-openssl"
+ fi
+ if ! use sqlite; then
+ myconf="--without-sqlite"
+ fi
+ if ! use sqlite3; then
+ myconf="--without-sqlite3"
+ fi
+ if ! use mysql; then
+ myconf="--without-mysql"
+ fi
+ if ! use fltk; then
+ myconf="--without-fltk"
+ fi
+ if ! use opengl; then
+ myconf="--without-opengl"
+ fi
+ if ! use mesa; then
+ myconf="--without-mesa"
+ fi
+ if ! use glut; then
+ myconf="--without-glut"
+ fi
+ if ! use freetype; then
+ myconf="--without-freetype"
+ fi
+ if ! use fastcgi; then
+ myconf="--without-fastcgi"
+ fi
+ if ! use python; then
+ myconf="--without-python"
+ fi
+ if ! use cppunit; then
+ myconf="--without-cppunit"
+ fi
+ if ! use icu; then
+ myconf="--without-icu"
+ fi
+ if ! use expat; then
+ myconf="--without-expat"
+ fi
+ if ! use sablotron; then
+ myconf="--without-sablotron"
+ fi
+ if ! use xml; then
+ myconf="--without-xml"
+ fi
+ if ! use xslt; then
+ myconf="--without-xslt"
+ fi
+ if ! use xerces; then
+ myconf="--without-xerces"
+ fi
+ if ! use xalan; then
+ myconf="--without-xalan"
+ fi
+ if ! use muparser; then
+ myconf="--without-muparser"
+ fi
+ if ! use hdf5; then
+ myconf="--without-hdf5"
+ fi
+ if ! use gif; then
+ myconf="--without-gif"
+ fi
+ if ! use jpeg; then
+ myconf="--without-jpeg"
+ fi
+ if ! use png; then
+ myconf="--without-png"
+ fi
+ if ! use tiff; then
+ myconf="--without-tiff"
+ fi
+ if ! use xpm; then
+ myconf="--without-xpm"
+ fi
+ if ! use X; then
+ myconf="--without-gui --without-x"
+ fi
+
+ # http://www.ncbi.nlm.nih.gov/books/NBK7167/
+ if ! use test; then
+ myconf="--with-projects="${FILESDIR}"/disable-testsuite-compilation.txt"
+ fi
+
+ # TODO
+ # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
+ # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9
+
+ "${S}"/configure --without-debug \
+ --with-bin-release \
+ --with-bincopy \
+ --without-static \
+ --with-dll \
+ --with-mt \
+ --with-lfs \
+ --prefix="${ED}"/usr \
+ --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
+ ${myconf} LDFLAGS="-Wl,--no-as-needed" \
+ || die
+}
+
+src_compile() {
+ # all_r would ignore the --with-projects contents and build more
+ # emake all_r -C GCC*-Release*/build || die
+ # all_p with compile only selected/required components
+ emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
+}
+
+src_install() {
+ emake install || die
+ # File collisions with sci-biology/ncbi-tools
+ rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
+
+ echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
+ doenvd "${S}/99${PN}"
+}
+
+pkg_postinst() {
+ einfo 'Please run "source /etc/profile" before using this package in the current shell.'
+ einfo 'Documentation is at http://www.ncbi.nlm.nih.gov/books/NBK7167/'
+}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-01-07 17:09 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-01-07 17:09 UTC (permalink / raw
To: gentoo-commits
commit: cd1e9304f788b93e10e6efe79580395d9cc04160
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jan 7 17:07:51 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jan 7 17:07:51 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=cd1e9304
sci-biology/ncbi-tools++-9.0.0: although masked a not passing repoman checks this ebuild works for me, finally. All patches from upstream.
---
sci-biology/ncbi-tools++/files/make_install.patch | 22 +++++++
.../report_project_settings_configure.ac.patch | 64 +++++++++++++++++++
.../files/report_project_settings_configure.patch | 66 ++++++++++++++++++++
.../files/respect_CXXFLAGS_configure.ac.patch | 54 ++++++++++++++++
.../files/respect_CXXFLAGS_configure.patch | 53 ++++++++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 9 ++-
6 files changed, 266 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/make_install.patch b/sci-biology/ncbi-tools++/files/make_install.patch
new file mode 100644
index 0000000..081d99b
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/make_install.patch
@@ -0,0 +1,22 @@
+The C++ Toolkit now includes a copy of the SRA Toolkit, which
+establishes an ncbi/ hierarchy under lib, which previously had no
+subdirectories. Please try the following patch to the top Makefile (and
+its progenitor, src/build-system/Makefile.in.top):
+
+Index: Makefile.in.top
+===================================================================
+--- Makefile.in.top (revision 358093)
++++ Makefile.in.top (working copy)
+@@ -39,7 +39,10 @@
+ -$(RMDIR) $(pincludedir)
+ $(INSTALL) -d $(bindir) $(libdir) $(pincludedir)
+ $(INSTALL) $(lbindir)/* $(bindir)
+- $(INSTALL) -m 644 $(llibdir)/* $(libdir)
++ $(INSTALL) -m 644 $(llibdir)/*.* $(libdir)
++ if test -d $(llibdir)/ncbi; then \
++ cp -pPR $(llibdir)/ncbi $(libdir)/; \
++ fi
+ -rm -f $(libdir)/lib*-static.a
+ cd $(libdir) && \
+ for x in *.a; do ln -s "$$x" "`basename \"$$x\" .a`-static.a"; done
+
diff --git a/sci-biology/ncbi-tools++/files/report_project_settings_configure.ac.patch b/sci-biology/ncbi-tools++/files/report_project_settings_configure.ac.patch
new file mode 100644
index 0000000..41240c3
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/report_project_settings_configure.ac.patch
@@ -0,0 +1,64 @@
+--- trunk/c++/src/build-system/configure.ac 2012/12/27 15:43:29 56694
++++ trunk/c++/src/build-system/configure.ac 2013/01/03 03:16:14 56754
+@@ -605,7 +605,8 @@
+ fi
+
+ case "$with_projects" in
+- "") if test -r projects; then
++ ""|yes)
++ if test -r projects; then
+ AC_MSG_NOTICE([using default projects file "projects".])
+ with_projects=projects
+ AC_SUBST(PROJECTS, "\$(top_srcdir)/projects")
+@@ -623,6 +624,16 @@
+ * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
+ esac
+
++if test -n "$with_projects"; then
++ case "$with_projects" in
++ /* ) abs_projects=$with_projects ;;
++ yes) abs_projects=$srcdir/projects ;;
++ * ) abs_projects=$srcdir/$with_projects ;;
++ esac
++ test -r "$abs_projects" || \
++ AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
++fi
++
+ # Check for custom optimization flags before potentially going with defaults.
+ skip_fast_flags=no
+ if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
+@@ -6379,7 +6390,7 @@
+ sep=", "
+ fi
+ if test -n "$reason" -a "$with_internal" = "yes"; then
+- if test -z "$with_projects" -o "$with_projects" = "no"; then
++ if test -z "$with_projects"; then
+ AC_MSG_ERROR([--with-internal: Cannot build INTERNAL projects: missing $reason])
+ else
+ AC_MSG_WARN([--with-internal: Cannot build all INTERNAL projects: missing $reason])
+@@ -6982,11 +6993,9 @@
+ else
+ cfm_flags='-remoteptb'
+ fi
+- case "$with_projects" in
+- yes ) cfm_flags="$cfm_flags -p projects" ;;
+- no | '' ) ;;
+- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
+- esac
++ if test -n "$with_projects"; then
++ cfm_flags="$cfm_flags -p $with_projects"
++ fi
+ if test "$with_configure_dialog" = yes; then
+ cfm_flags="$cfm_flags -cfg"
+ fi
+@@ -7029,7 +7038,8 @@
+ esac
+
+ if test -n "$with_projects"; then
+- build_proj="To build selected projects: cd $builddir && make all_p"
++ build_proj="To build selected projects (as listed in \"$with_projects\"):
++ cd $builddir && make all_p"
+ fi
+
+ cat << EOCONF
+
diff --git a/sci-biology/ncbi-tools++/files/report_project_settings_configure.patch b/sci-biology/ncbi-tools++/files/report_project_settings_configure.patch
new file mode 100644
index 0000000..0c1b2d2
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/report_project_settings_configure.patch
@@ -0,0 +1,66 @@
+-- trunk/c++/src/build-system/configure 2012/12/27 15:43:29 56694
++++ trunk/c++/src/build-system/configure 2013/01/03 03:16:14 56754
+@@ -3125,7 +3125,8 @@
+ fi
+
+ case "$with_projects" in
+- "") if test -r projects; then
++ ""|yes)
++ if test -r projects; then
+ { echo "$as_me:$LINENO: using default projects file \"projects\"." >&5
+ echo "$as_me: using default projects file \"projects\"." >&6;}
+ with_projects=projects
+@@ -3151,6 +3152,18 @@
+ ;;
+ esac
+
++if test -n "$with_projects"; then
++ case "$with_projects" in
++ /* ) abs_projects=$with_projects ;;
++ yes) abs_projects=$srcdir/projects ;;
++ * ) abs_projects=$srcdir/$with_projects ;;
++ esac
++ test -r "$abs_projects" || \
++ { { echo "$as_me:$LINENO: error: unable to read requested projects file \"$abs_projects\"." >&5
++echo "$as_me: error: unable to read requested projects file \"$abs_projects\"." >&2;}
++ { (exit 1); exit 1; }; }
++fi
++
+ # Check for custom optimization flags before potentially going with defaults.
+ skip_fast_flags=no
+ if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
+@@ -33825,7 +33838,7 @@
+ sep=", "
+ fi
+ if test -n "$reason" -a "$with_internal" = "yes"; then
+- if test -z "$with_projects" -o "$with_projects" = "no"; then
++ if test -z "$with_projects"; then
+ { { echo "$as_me:$LINENO: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&5
+ echo "$as_me: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&2;}
+ { (exit 1); exit 1; }; }
+@@ -36062,11 +36075,9 @@
+ else
+ cfm_flags='-remoteptb'
+ fi
+- case "$with_projects" in
+- yes ) cfm_flags="$cfm_flags -p projects" ;;
+- no | '' ) ;;
+- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
+- esac
++ if test -n "$with_projects"; then
++ cfm_flags="$cfm_flags -p $with_projects"
++ fi
+ if test "$with_configure_dialog" = yes; then
+ cfm_flags="$cfm_flags -cfg"
+ fi
+@@ -36110,7 +36121,8 @@
+ esac
+
+ if test -n "$with_projects"; then
+- build_proj="To build selected projects: cd $builddir && make all_p"
++ build_proj="To build selected projects (as listed in \"$with_projects\"):
++ cd $builddir && make all_p"
+ fi
+
+ cat << EOCONF
+
diff --git a/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.ac.patch b/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.ac.patch
new file mode 100644
index 0000000..89dae23
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.ac.patch
@@ -0,0 +1,54 @@
+--- trunk/c++/src/build-system/configure.ac 2012/12/21 15:12:14 56664
++++ trunk/c++/src/build-system/configure.ac 2012/12/27 15:43:29 56694
+@@ -623,6 +623,13 @@
+ * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
+ esac
+
++# Check for custom optimization flags before potentially going with defaults.
++skip_fast_flags=no
++if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
++ case " $CFLAGS $CXXFLAGS" in
++ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
++ esac
++fi
+
+ #### Always define this
+ AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
+@@ -1431,7 +1438,7 @@
+ wsrx="[[$wschars]]"
+
+ #### Flags to enable (potentially unsafe) extra optimization.
+-if test -z "$DEF_FAST_FLAGS" -o -z "$FAST_CXXFLAGS" ; then
++if test "$skip_fast_flags" = no -a -z "$DEF_FAST_FLAGS" ; then
+ case "$compiler:$compiler_version" in
+ GCC:2* | GCC:344 )
+ # GCC 2.9x sometimes experiences internal errors at high optimization;
+@@ -1502,8 +1509,6 @@
+ DEF_FAST_FLAGS="-O"
+ ;;
+ esac
+-else
+- DEF_FAST_FLAGS="-O"
+ fi
+
+ : ${FAST_CFLAGS="$DEF_FAST_FLAGS"}
+@@ -2608,9 +2613,15 @@
+ CXXFLAGS="$CXXFLAGS -O" ; fi
+ if echo " $LDFLAGS " | grep -v "$optrx" >/dev/null ; then
+ LDFLAGS="$LDFLAGS -O" ; fi
+- FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
+- FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
+- FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
++ if test "$skip_fast_flags" = yes ; then
++ FAST_CFLAGS="$CFLAGS"
++ FAST_CXXFLAGS="$CXXFLAGS"
++ FAST_LDFLAGS="$LDFLAGS"
++ else
++ FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
++ FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
++ FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
++ fi
+ fi
+ changequote([, ])dnl
+ fi
+
diff --git a/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.patch b/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.patch
new file mode 100644
index 0000000..669b317
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.patch
@@ -0,0 +1,53 @@
+--- trunk/c++/src/build-system/configure 2012/12/21 15:12:14 56664
++++ trunk/c++/src/build-system/configure 2012/12/27 15:43:29 56694
+@@ -3151,6 +3151,13 @@
+ ;;
+ esac
+
++# Check for custom optimization flags before potentially going with defaults.
++skip_fast_flags=no
++if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
++ case " $CFLAGS $CXXFLAGS" in
++ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
++ esac
++fi
+
+ #### Always define this
+
+@@ -5715,7 +5722,7 @@
+ wsrx="[$wschars]"
+
+ #### Flags to enable (potentially unsafe) extra optimization.
+-if test -z "$DEF_FAST_FLAGS" -o -z "$FAST_CXXFLAGS" ; then
++if test "$skip_fast_flags" = no -a -z "$DEF_FAST_FLAGS" ; then
+ case "$compiler:$compiler_version" in
+ GCC:2* | GCC:344 )
+ # GCC 2.9x sometimes experiences internal errors at high optimization;
+@@ -5786,8 +5793,6 @@
+ DEF_FAST_FLAGS="-O"
+ ;;
+ esac
+-else
+- DEF_FAST_FLAGS="-O"
+ fi
+
+ : ${FAST_CFLAGS="$DEF_FAST_FLAGS"}
+@@ -8936,9 +8941,15 @@
+ CXXFLAGS="$CXXFLAGS -O" ; fi
+ if echo " $LDFLAGS " | grep -v "$optrx" >/dev/null ; then
+ LDFLAGS="$LDFLAGS -O" ; fi
+- FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
+- FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
+- FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
++ if test "$skip_fast_flags" = yes ; then
++ FAST_CFLAGS="$CFLAGS"
++ FAST_CXXFLAGS="$CXXFLAGS"
++ FAST_LDFLAGS="$LDFLAGS"
++ else
++ FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
++ FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
++ FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
++ fi
+ fi
+ fi
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
index e2950be..376e6d9 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
@@ -30,7 +30,7 @@ DEPEND="berkdb? ( sys-libs/db:4.3 )
ftds? ( dev-db/freetds )
boost? ( dev-libs/boost )
curl? ( net-misc/curl )
- sqlite? ( dev-db/sqlite:2 )
+ sqlite? ( dev-db/sqlite )
sqlite3? ( dev-db/sqlite:3 )
mysql? ( virtual/mysql )
gnutls? ( net-libs/gnutls )
@@ -139,7 +139,12 @@ src_prepare() {
epatch \
"${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
"${FILESDIR}"/curl-types.patch \
- "${FILESDIR}"/malloc_initialize_upstream_fix.patch
+ "${FILESDIR}"/malloc_initialize_upstream_fix.patch \
+ "${FILESDIR}"/respect_CXXFLAGS_configure.ac.patch \
+ "${FILESDIR}"/respect_CXXFLAGS_configure.patch \
+ "${FILESDIR}"/report_project_settings_configure.ac.patch \
+ "${FILESDIR}"/report_project_settings_configure.patch \
+ "${FILESDIR}"/make_install.patch
# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-01-07 22:13 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-01-07 22:13 UTC (permalink / raw
To: gentoo-commits
commit: c98c3577380e98c53079ded665754cb13da1be43
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jan 7 22:11:42 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jan 7 22:11:42 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c98c3577
put back in the --as-needed LDFLAG to yield hopefully smaller executables; recreating the patch so that it applies automatically
---
sci-biology/ncbi-tools++/files/make_install.patch | 34 +++++++------------
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 5 ++-
2 files changed, 17 insertions(+), 22 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/make_install.patch b/sci-biology/ncbi-tools++/files/make_install.patch
index 081d99b..e98f111 100644
--- a/sci-biology/ncbi-tools++/files/make_install.patch
+++ b/sci-biology/ncbi-tools++/files/make_install.patch
@@ -1,22 +1,14 @@
-The C++ Toolkit now includes a copy of the SRA Toolkit, which
-establishes an ncbi/ hierarchy under lib, which previously had no
-subdirectories. Please try the following patch to the top Makefile (and
-its progenitor, src/build-system/Makefile.in.top):
-
-Index: Makefile.in.top
-===================================================================
---- Makefile.in.top (revision 358093)
-+++ Makefile.in.top (working copy)
+--- src/build-system/Makefile.in.top.old 2013-01-07 23:07:29.970141951 +0100
++++ src/build-system/Makefile.in.top 2013-01-07 23:08:37.940990190 +0100
@@ -39,7 +39,10 @@
- -$(RMDIR) $(pincludedir)
- $(INSTALL) -d $(bindir) $(libdir) $(pincludedir)
- $(INSTALL) $(lbindir)/* $(bindir)
-- $(INSTALL) -m 644 $(llibdir)/* $(libdir)
-+ $(INSTALL) -m 644 $(llibdir)/*.* $(libdir)
-+ if test -d $(llibdir)/ncbi; then \
-+ cp -pPR $(llibdir)/ncbi $(libdir)/; \
-+ fi
- -rm -f $(libdir)/lib*-static.a
- cd $(libdir) && \
- for x in *.a; do ln -s "$$x" "`basename \"$$x\" .a`-static.a"; done
-
+ -$(RMDIR) $(pincludedir)
+ $(INSTALL) -d $(bindir) $(libdir) $(pincludedir)
+ $(INSTALL) $(lbindir)/* $(bindir)
+- $(INSTALL) -m 644 $(llibdir)/* $(libdir)
++ $(INSTALL) -m 644 $(llibdir)/*.* $(libdir)
++ if test -d $(llibdir)/ncbi; then \
++ cp -pPR $(llibdir)/ncbi $(libdir)/; \
++ fi
+ -rm -f $(libdir)/lib*-static.a
+ cd $(libdir) && \
+ for x in *.a; do ln -s "$$x" "`basename \"$$x\" .a`-static.a"; done
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
index 376e6d9..fa05240 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
@@ -283,8 +283,10 @@ src_configure() {
--with-lfs \
--prefix="${ED}"/usr \
--libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
- ${myconf} LDFLAGS="-Wl,--no-as-needed" \
+ ${myconf} LDFLAGS="-Wl,--as-needed" \
|| die
+
+ # ${myconf} LDFLAGS="-Wl,--no-as-needed"
}
src_compile() {
@@ -298,6 +300,7 @@ src_install() {
emake install || die
# File collisions with sci-biology/ncbi-tools
rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
+ mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop2
echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
doenvd "${S}/99${PN}"
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-01-30 17:08 Justin Lecher
0 siblings, 0 replies; 30+ messages in thread
From: Justin Lecher @ 2013-01-30 17:08 UTC (permalink / raw
To: gentoo-commits
commit: 18c9916513894240043fe47a76012e9a58342605
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 30 17:07:57 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jan 30 17:07:57 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=18c99165
More work on as-needed problems
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
---
.../files/ncbi-tools++-9.0.0-as-needed.patch | 767 ++++++++++++++++++++
.../files/ncbi-tools++-9.0.0-conf-opts.patch | 213 ++++++
.../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 188 ++---
3 files changed, 1049 insertions(+), 119 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-as-needed.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-as-needed.patch
new file mode 100644
index 0000000..7763361
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-as-needed.patch
@@ -0,0 +1,767 @@
+ src/algo/blast/blastinput/Makefile.blastinput.lib | 2 +-
+ src/algo/ms/omssa/Makefile.xomssa.lib | 2 ++
+ src/algo/sequence/Makefile.xalgoseq.lib | 2 ++
+ src/algo/winmask/Makefile.xalgowinmask.lib | 1 +
+ src/cgi/Makefile.cgi.lib | 2 ++
+ src/cgi/Makefile.fcgi.lib | 2 ++
+ src/connect/Makefile.connssl.lib | 2 ++
+ src/connect/Makefile.xconnect.lib | 4 ++++
+ src/connect/Makefile.xthrserv.lib | 2 +-
+ src/connect/Makefile.xxconnect.lib | 2 ++
+ src/connect/services/Makefile.ncbi_xcache_netcache.lib | 2 +-
+ src/connect/services/Makefile.xconnserv.lib | 2 +-
+ src/connect/test/Makefile.conntest.lib | 2 ++
+ src/corelib/Makefile.test_boost.lib | 2 ++
+ src/corelib/Makefile.test_mt.lib | 2 ++
+ src/corelib/test/Makefile.pbacktest.lib | 2 ++
+ src/db/bdb/Makefile.bdb.lib | 4 ++++
+ src/db/bdb/Makefile.ncbi_xcache_bdb.lib | 2 +-
+ src/db/sqlite/Makefile.sqlitewrapp.lib | 3 +++
+ src/dbapi/Makefile.dbapi.lib | 5 +++++
+ src/dbapi/driver/Makefile.dbapi_driver.lib | 2 ++
+ src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib | 2 ++
+ src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib | 2 +-
+ src/dbapi/simple/Makefile.sdbapi.lib | 1 +
+ src/html/Makefile.html.lib | 2 ++
+ src/objects/access/Makefile.access.lib | 1 +
+ src/objects/biblio/Makefile.biblio.lib | 2 ++
+ src/objects/blast/Makefile.blast.lib | 2 ++
+ src/objects/blast/Makefile.xnetblastcli.lib | 2 ++
+ src/objects/cdd/Makefile.cdd.lib | 2 ++
+ src/objects/cn3d/Makefile.cn3d.lib | 2 ++
+ src/objects/general/Makefile.general.lib | 2 ++
+ src/objects/id2/Makefile.id2.lib | 2 ++
+ src/objects/medlars/Makefile.medlars.lib | 2 ++
+ src/objects/medline/Makefile.medline.lib | 2 ++
+ src/objects/ncbimime/Makefile.ncbimime.lib | 2 ++
+ src/objects/omssa/Makefile.omssa.lib | 2 ++
+ src/objects/pub/Makefile.pub.lib | 2 ++
+ src/objects/scoremat/Makefile.scoremat.lib | 2 ++
+ src/objects/seq/Makefile.seq.lib | 2 ++
+ src/objects/seqcode/Makefile.seqcode.lib | 2 ++
+ src/objects/seqedit/Makefile.seqedit.lib | 1 +
+ src/objects/seqset/Makefile.seqset.lib | 1 +
+ src/objects/seqsplit/Makefile.seqsplit.lib | 2 ++
+ src/objects/submit/Makefile.submit.lib | 1 +
+ src/objects/taxon1/Makefile.taxon1.lib | 2 ++
+ src/objects/valerr/Makefile.valerr.lib | 2 ++
+ src/objects/valid/Makefile.valid.lib | 2 ++
+ src/objects/variation/Makefile.variation.lib | 1 +
+ src/objmgr/util/Makefile.util.lib | 1 +
+ src/objtools/align_format/Makefile.align_format.lib | 2 ++
+ src/objtools/blast/seqdb_reader/Makefile.seqdb.lib | 2 ++
+ src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib | 3 +++
+ src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib | 2 +-
+ src/objtools/readers/Makefile.xobjread.lib | 3 +--
+ src/objtools/readers/Makefile.xobjreadex.lib | 2 +-
+ src/objtools/simple/Makefile.xobjsimple.lib | 1 +
+ src/objtools/validator/Makefile.validator.lib | 2 ++
+ src/serial/Makefile.serial.lib | 2 ++
+ src/serial/soap/Makefile.soap.lib | 2 ++
+ src/serial/soap/Makefile.soap_server.lib | 2 ++
+ src/serial/test/Makefile.we_cpp.lib | 1 +
+ src/util/Makefile.util.lib | 2 ++
+ src/util/compress/api/Makefile.compress.lib | 2 +-
+ src/util/qparse/Makefile.xqueryparse.lib | 2 ++
+ src/util/regexp/Makefile.regexp.lib | 2 ++
+ src/util/sequtil/Makefile.sequtil.lib | 2 ++
+ src/util/xregexp/Makefile.xregexp.lib | 2 +-
+ 68 files changed, 124 insertions(+), 12 deletions(-)
+
+diff --git a/src/algo/blast/blastinput/Makefile.blastinput.lib b/src/algo/blast/blastinput/Makefile.blastinput.lib
+index bfb315c..25873a2 100644
+--- a/src/algo/blast/blastinput/Makefile.blastinput.lib
++++ b/src/algo/blast/blastinput/Makefile.blastinput.lib
+@@ -24,7 +24,7 @@ SRC = $(SRC_CXX)
+
+ LIB = blastinput
+
+-DLL_LIB = xblast $(OBJMGR_LIBS)
++DLL_LIB = xblast seqdb $(OBJMGR_LIBS)
+
+ # should be redundant, given the above :-/
+ ASN_DEP = seqset xnetblast
+diff --git a/src/algo/ms/omssa/Makefile.xomssa.lib b/src/algo/ms/omssa/Makefile.xomssa.lib
+index 872b92e..82cc8b6 100644
+--- a/src/algo/ms/omssa/Makefile.xomssa.lib
++++ b/src/algo/ms/omssa/Makefile.xomssa.lib
+@@ -19,3 +19,5 @@ LIB = xomssa
+ CFLAGS = $(FAST_CFLAGS)
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
++
++DLL_LIB = xutil
+diff --git a/src/algo/sequence/Makefile.xalgoseq.lib b/src/algo/sequence/Makefile.xalgoseq.lib
+index 51f4cd7..0c20790 100644
+--- a/src/algo/sequence/Makefile.xalgoseq.lib
++++ b/src/algo/sequence/Makefile.xalgoseq.lib
+@@ -13,3 +13,5 @@ LDFLAGS = $(FAST_LDFLAGS)
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
+
+ WATCHERS = dicuccio
++
++DLL_LIB = taxon1 xalnmgr
+diff --git a/src/algo/winmask/Makefile.xalgowinmask.lib b/src/algo/winmask/Makefile.xalgowinmask.lib
+index afaf676..7344871 100644
+--- a/src/algo/winmask/Makefile.xalgowinmask.lib
++++ b/src/algo/winmask/Makefile.xalgowinmask.lib
+@@ -21,3 +21,4 @@ SRC = seq_masker seq_masker_score_mean seq_masker_score_mean_glob \
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++DLL_LIB = seqmasks_io
+diff --git a/src/cgi/Makefile.cgi.lib b/src/cgi/Makefile.cgi.lib
+index a990390..edf40aa 100644
+--- a/src/cgi/Makefile.cgi.lib
++++ b/src/cgi/Makefile.cgi.lib
+@@ -11,3 +11,5 @@ LIB = xcgi
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
+
+ WATCHERS = vakatov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/cgi/Makefile.fcgi.lib b/src/cgi/Makefile.fcgi.lib
+index 2569b41..6b85780 100644
+--- a/src/cgi/Makefile.fcgi.lib
++++ b/src/cgi/Makefile.fcgi.lib
+@@ -12,3 +12,5 @@ LIB = xfcgi
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE) -DNCBI_XFCGI_EXPORTS
+
+ WATCHERS = vakatov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/connect/Makefile.connssl.lib b/src/connect/Makefile.connssl.lib
+index b400ca2..8756320 100644
+--- a/src/connect/Makefile.connssl.lib
++++ b/src/connect/Makefile.connssl.lib
+@@ -8,3 +8,5 @@ CPPFLAGS = $(GNUTLS_INCLUDE) $(ORIG_CPPFLAGS)
+ LIBS = $(GNUTLS_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = lavr
++
++DLL_LIB = connect
+diff --git a/src/connect/Makefile.xconnect.lib b/src/connect/Makefile.xconnect.lib
+index 473bb0b..88dae10 100644
+--- a/src/connect/Makefile.xconnect.lib
++++ b/src/connect/Makefile.xconnect.lib
+@@ -11,9 +11,13 @@ include $(srcdir)/Makefile.xxconnect.lib
+ SRC = $(SRC_C) $(SRC_CXX)
+ UNIX_SRC = $(LOCAL_LBSM)
+
++DLL_LIB = xncbi
++
+ LIB = xconnect
+ PROJ_TAG = core
+
+ LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi xutil
+diff --git a/src/connect/Makefile.xthrserv.lib b/src/connect/Makefile.xthrserv.lib
+index 1e5b857..0833a78 100644
+--- a/src/connect/Makefile.xthrserv.lib
++++ b/src/connect/Makefile.xthrserv.lib
+@@ -4,6 +4,6 @@ SRC = threaded_server server server_monitor connection_pool
+ LIB = xthrserv
+ PROJ_TAG = core
+ LIBS = $(NETWORK_LIBS)
+-DLL_LIB = xutil xconnect
++DLL_LIB = xncbi xutil xconnect
+
+ WATCHERS = ivanovp
+diff --git a/src/connect/Makefile.xxconnect.lib b/src/connect/Makefile.xxconnect.lib
+index d7ba751..8e27819 100644
+--- a/src/connect/Makefile.xxconnect.lib
++++ b/src/connect/Makefile.xxconnect.lib
+@@ -16,3 +16,5 @@ PROJ_TAG = core
+ LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi xutil connect
+diff --git a/src/connect/services/Makefile.ncbi_xcache_netcache.lib b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
+index 606f4f1..e6cfdac 100644
+--- a/src/connect/services/Makefile.ncbi_xcache_netcache.lib
++++ b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
+@@ -6,7 +6,7 @@ SRC = neticache_client
+ LIB = ncbi_xcache_netcache
+
+ LIB_OR_DLL = both
+-DLL_LIB = xconnserv xconnect xutil
++DLL_LIB = xconnserv xconnect xutil xncbi
+
+ CPPFLAGS = $(ORIG_CPPFLAGS)
+ LIBS = $(ORIG_LIBS)
+diff --git a/src/connect/services/Makefile.xconnserv.lib b/src/connect/services/Makefile.xconnserv.lib
+index 4b8f21f..04fcbf8 100644
+--- a/src/connect/services/Makefile.xconnserv.lib
++++ b/src/connect/services/Makefile.xconnserv.lib
+@@ -15,6 +15,6 @@ LIB = xconnserv
+ PROJ_TAG = core
+ LIBS = $(NETWORK_LIBS)
+
+-DLL_LIB = xthrserv xconnect xutil
++DLL_LIB = xthrserv xconnect xutil xncbi
+
+ WATCHERS = kazimird
+diff --git a/src/connect/test/Makefile.conntest.lib b/src/connect/test/Makefile.conntest.lib
+index 58a2fa5..3d9876c 100644
+--- a/src/connect/test/Makefile.conntest.lib
++++ b/src/connect/test/Makefile.conntest.lib
+@@ -4,3 +4,5 @@ SRC = ncbi_conntest
+ LIB = xconntest
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi xutil connect
+diff --git a/src/corelib/Makefile.test_boost.lib b/src/corelib/Makefile.test_boost.lib
+index e8fa174..f90441d 100644
+--- a/src/corelib/Makefile.test_boost.lib
++++ b/src/corelib/Makefile.test_boost.lib
+@@ -9,3 +9,5 @@ REQUIRES = Boost.Test.Included
+
+ WATCHERS = ivanovp
+ PROJ_TAG = test
++
++DLL_LIB = xncbi
+diff --git a/src/corelib/Makefile.test_mt.lib b/src/corelib/Makefile.test_mt.lib
+index 6153eab..f64c3a2 100644
+--- a/src/corelib/Makefile.test_mt.lib
++++ b/src/corelib/Makefile.test_mt.lib
+@@ -8,3 +8,5 @@ LIB = test_mt
+ USE_PCH = no
+ WATCHERS = grichenk
+ PROJ_TAG = test
++
++DLL_LIB = xncbi
+diff --git a/src/corelib/test/Makefile.pbacktest.lib b/src/corelib/test/Makefile.pbacktest.lib
+index da0c616..c4c62ab 100644
+--- a/src/corelib/test/Makefile.pbacktest.lib
++++ b/src/corelib/test/Makefile.pbacktest.lib
+@@ -4,3 +4,5 @@ SRC = pbacktest
+ LIB = xpbacktest
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi
+diff --git a/src/db/bdb/Makefile.bdb.lib b/src/db/bdb/Makefile.bdb.lib
+index 3729707..cd2827c 100644
+--- a/src/db/bdb/Makefile.bdb.lib
++++ b/src/db/bdb/Makefile.bdb.lib
+@@ -14,3 +14,7 @@ LIB = bdb
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
+
+ WATCHERS = kuznets
++
++DLL_LIB = xncbi xutil
++LIBS = $(BERKELEYDB_LIBS)
++
+diff --git a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
+index 7e97a26..8f54efc 100644
+--- a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
++++ b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
+@@ -8,7 +8,7 @@ SRC = bdb_blobcache
+ LIB = ncbi_xcache_bdb
+
+ LIB_OR_DLL = both
+-DLL_LIB = bdb xutil
++DLL_LIB = bdb xutil xncbi
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
+ LIBS = $(BERKELEYDB_LIBS) $(ORIG_LIBS)
+diff --git a/src/db/sqlite/Makefile.sqlitewrapp.lib b/src/db/sqlite/Makefile.sqlitewrapp.lib
+index cecfd16..c01668b 100644
+--- a/src/db/sqlite/Makefile.sqlitewrapp.lib
++++ b/src/db/sqlite/Makefile.sqlitewrapp.lib
+@@ -8,3 +8,6 @@ CPPFLAGS= $(ORIG_CPPFLAGS) $(SQLITE3_INCLUDE)
+ REQUIRES = SQLITE3
+
+ WATCHERS = ivanovp
++
++DLL_LIB = xncbi xutil
++LIBS = $(SQLITE3_LIBS)
+diff --git a/src/dbapi/Makefile.dbapi.lib b/src/dbapi/Makefile.dbapi.lib
+index 6e3ad4c..4475a78 100644
+--- a/src/dbapi/Makefile.dbapi.lib
++++ b/src/dbapi/Makefile.dbapi.lib
+@@ -10,3 +10,8 @@ LIB = dbapi
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
+
+ WATCHERS = ivanovp
++
++#ASN_DEP = driver
++
++DLL_LIB = xncbi xutil # dbapi_driver$(DLL)
++LIBS = $(PYTHON_LIBS)
+diff --git a/src/dbapi/driver/Makefile.dbapi_driver.lib b/src/dbapi/driver/Makefile.dbapi_driver.lib
+index dfeac5a..bc113ed 100644
+--- a/src/dbapi/driver/Makefile.dbapi_driver.lib
++++ b/src/dbapi/driver/Makefile.dbapi_driver.lib
+@@ -22,3 +22,5 @@ CXXFLAGS_darwin = -fno-inline
+ CXXFLAGS = $(ORIG_CXXFLAGS) $(CXXFLAGS_$(OSTYPE))
+
+ WATCHERS = ivanovp
++
++DLL_LIB = xncbi xutil
+diff --git a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
+index 941ccd6..f1f872c 100644
+--- a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
++++ b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
+@@ -6,3 +6,5 @@ LIB = dbapi_sample_base
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
+
+ WATCHERS = ivanovp
++
++DLL_LIB = xncbi xutil dbapi_driver
+diff --git a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
+index ebe08c4..86ecda6 100644
+--- a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
++++ b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
+@@ -11,7 +11,7 @@ LIB_OR_DLL = dll
+
+ # Dependencies for shared library
+ DLL_LIB = dbapi dbapi_driver$(DLL) $(XCONNEXT) xconnect xutil xncbi
+-LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS)
++LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS) $(PYTHON_LIBS)
+ # Drop other flags to build with full dependencies under ICC.
+ DLL_LDFLAGS = $(DLL_UNDEF_FLAGS)
+
+diff --git a/src/dbapi/simple/Makefile.sdbapi.lib b/src/dbapi/simple/Makefile.sdbapi.lib
+index 603fd1e..0d06323 100644
+--- a/src/dbapi/simple/Makefile.sdbapi.lib
++++ b/src/dbapi/simple/Makefile.sdbapi.lib
+@@ -5,3 +5,4 @@ LIB = sdbapi
+
+ WATCHERS = ivanovp
+
++DLL_LIB = xncbi xutil dbapi_driver ncbi_xdbapi_ftds xconnect xser bdb xconnserv
+diff --git a/src/html/Makefile.html.lib b/src/html/Makefile.html.lib
+index a57c1e3..0005299 100644
+--- a/src/html/Makefile.html.lib
++++ b/src/html/Makefile.html.lib
+@@ -8,3 +8,5 @@ SRC = node html htmlhelper page pager selection components \
+ LIB = xhtml
+
+ WATCHERS = ivanov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/objects/access/Makefile.access.lib b/src/objects/access/Makefile.access.lib
+index 11421d9..cf3a300 100644
+--- a/src/objects/access/Makefile.access.lib
++++ b/src/objects/access/Makefile.access.lib
+@@ -1,2 +1,3 @@
+ LIB = access
+ SRC = access__ access___
++DLL_LIB = xncbi
+diff --git a/src/objects/biblio/Makefile.biblio.lib b/src/objects/biblio/Makefile.biblio.lib
+index 2c7d491..cb54ba6 100644
+--- a/src/objects/biblio/Makefile.biblio.lib
++++ b/src/objects/biblio/Makefile.biblio.lib
+@@ -1,2 +1,4 @@
+ LIB = biblio
+ SRC = biblio__ biblio___ citation_base
++
++DLL_LIB = general xser xncbi xutil
+diff --git a/src/objects/blast/Makefile.blast.lib b/src/objects/blast/Makefile.blast.lib
+index 0dd0fa3..5ffe052 100644
+--- a/src/objects/blast/Makefile.blast.lib
++++ b/src/objects/blast/Makefile.blast.lib
+@@ -2,3 +2,5 @@ LIB = xnetblast
+ SRC = blast__ blast___ names
+
+ WATCHERS = camacho
++
++DLL_LIB = xncbi xutil xser
+diff --git a/src/objects/blast/Makefile.xnetblastcli.lib b/src/objects/blast/Makefile.xnetblastcli.lib
+index 96325c4..5a72805 100644
+--- a/src/objects/blast/Makefile.xnetblastcli.lib
++++ b/src/objects/blast/Makefile.xnetblastcli.lib
+@@ -2,3 +2,5 @@ ASN_DEP = xnetblast
+
+ LIB = xnetblastcli
+ SRC = blastclient blastclient_
++
++DLL_LIB = xncbi xutil seqset connect xconnect xnetblast
+diff --git a/src/objects/cdd/Makefile.cdd.lib b/src/objects/cdd/Makefile.cdd.lib
+index 978cae9..e3176b2 100644
+--- a/src/objects/cdd/Makefile.cdd.lib
++++ b/src/objects/cdd/Makefile.cdd.lib
+@@ -1,2 +1,4 @@
+ LIB = cdd
+ SRC = cdd__ cdd___
++
++DLL_LIB = mmdb
+diff --git a/src/objects/cn3d/Makefile.cn3d.lib b/src/objects/cn3d/Makefile.cn3d.lib
+index 1af5d1d..b34a966 100644
+--- a/src/objects/cn3d/Makefile.cn3d.lib
++++ b/src/objects/cn3d/Makefile.cn3d.lib
+@@ -1,3 +1,5 @@
+ ASN_DEP = mmdb
+ LIB = cn3d
+ SRC = cn3d__ cn3d___
++
++DLL_LIB = mmdb
+diff --git a/src/objects/general/Makefile.general.lib b/src/objects/general/Makefile.general.lib
+index 951304f..3be083d 100644
+--- a/src/objects/general/Makefile.general.lib
++++ b/src/objects/general/Makefile.general.lib
+@@ -1,2 +1,4 @@
+ LIB = general
+ SRC = general__ general___ uoconv
++
++DLL_LIB = xser xncbi xutil
+diff --git a/src/objects/id2/Makefile.id2.lib b/src/objects/id2/Makefile.id2.lib
+index 09d8b36..b25700d 100644
+--- a/src/objects/id2/Makefile.id2.lib
++++ b/src/objects/id2/Makefile.id2.lib
+@@ -2,3 +2,5 @@ LIB = id2
+ SRC = id2__ id2___
+
+ WATCHERS = vasilche
++
++DLL_LIB = xser
+diff --git a/src/objects/medlars/Makefile.medlars.lib b/src/objects/medlars/Makefile.medlars.lib
+index 3a6d0cd..5230940 100644
+--- a/src/objects/medlars/Makefile.medlars.lib
++++ b/src/objects/medlars/Makefile.medlars.lib
+@@ -1,2 +1,4 @@
+ LIB = medlars
+ SRC = medlars__ medlars___
++
++DLL_LIB = xser
+diff --git a/src/objects/medline/Makefile.medline.lib b/src/objects/medline/Makefile.medline.lib
+index ea28066..eb42aa4 100644
+--- a/src/objects/medline/Makefile.medline.lib
++++ b/src/objects/medline/Makefile.medline.lib
+@@ -1,2 +1,4 @@
+ LIB = medline
+ SRC = medline__ medline___
++
++DLL_LIB = general biblio
+diff --git a/src/objects/ncbimime/Makefile.ncbimime.lib b/src/objects/ncbimime/Makefile.ncbimime.lib
+index 93cafdf..e5aa4eb 100644
+--- a/src/objects/ncbimime/Makefile.ncbimime.lib
++++ b/src/objects/ncbimime/Makefile.ncbimime.lib
+@@ -1,2 +1,4 @@
+ LIB = ncbimime
+ SRC = ncbimime__ ncbimime___
++
++DLL_LIB = mmdb
+diff --git a/src/objects/omssa/Makefile.omssa.lib b/src/objects/omssa/Makefile.omssa.lib
+index b79617f..e1d4a9e 100644
+--- a/src/objects/omssa/Makefile.omssa.lib
++++ b/src/objects/omssa/Makefile.omssa.lib
+@@ -2,3 +2,5 @@ APP_DEP = seq
+
+ LIB = omssa
+ SRC = omssa__ omssa___
++
++DLL_LIB = seq
+diff --git a/src/objects/pub/Makefile.pub.lib b/src/objects/pub/Makefile.pub.lib
+index 78c12e1..9baa08d 100644
+--- a/src/objects/pub/Makefile.pub.lib
++++ b/src/objects/pub/Makefile.pub.lib
+@@ -1,2 +1,4 @@
+ LIB = pub
+ SRC = pub__ pub___
++
++DLL_LIB = medline biblio
+diff --git a/src/objects/scoremat/Makefile.scoremat.lib b/src/objects/scoremat/Makefile.scoremat.lib
+index 62e01f5..93bb071 100644
+--- a/src/objects/scoremat/Makefile.scoremat.lib
++++ b/src/objects/scoremat/Makefile.scoremat.lib
+@@ -1,2 +1,4 @@
+ LIB = scoremat
+ SRC = scoremat__ scoremat___
++
++DLL_LIB = seqset seq
+diff --git a/src/objects/seq/Makefile.seq.lib b/src/objects/seq/Makefile.seq.lib
+index 1b5edc5..30ef316 100644
+--- a/src/objects/seq/Makefile.seq.lib
++++ b/src/objects/seq/Makefile.seq.lib
+@@ -13,3 +13,5 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \
+ seq_loc_from_string seq_loc_reverse_complementer
+
+ WATCHERS = vasilche grichenk
++
++DLL_LIB = general seqcode pub sequtil biblio xser xncbi xutil
+diff --git a/src/objects/seqcode/Makefile.seqcode.lib b/src/objects/seqcode/Makefile.seqcode.lib
+index dc9d60e..dabd95b 100644
+--- a/src/objects/seqcode/Makefile.seqcode.lib
++++ b/src/objects/seqcode/Makefile.seqcode.lib
+@@ -1,2 +1,4 @@
+ LIB = seqcode
+ SRC = seqcode__ seqcode___
++
++DLL_LIB = xncbi xser
+diff --git a/src/objects/seqedit/Makefile.seqedit.lib b/src/objects/seqedit/Makefile.seqedit.lib
+index 283a9b7..80724b1 100644
+--- a/src/objects/seqedit/Makefile.seqedit.lib
++++ b/src/objects/seqedit/Makefile.seqedit.lib
+@@ -1,3 +1,4 @@
+ LIB = seqedit
+ SRC = seqedit__ seqedit___
+
++DLL_LIB = xser seq
+diff --git a/src/objects/seqset/Makefile.seqset.lib b/src/objects/seqset/Makefile.seqset.lib
+index 87f16d0..febce67 100644
+--- a/src/objects/seqset/Makefile.seqset.lib
++++ b/src/objects/seqset/Makefile.seqset.lib
+@@ -1,2 +1,3 @@
+ LIB = seqset
+ SRC = seqset__ seqset___ gb_release_file
++DLL_LIB = xser seq
+diff --git a/src/objects/seqsplit/Makefile.seqsplit.lib b/src/objects/seqsplit/Makefile.seqsplit.lib
+index 87ae869..a693f50 100644
+--- a/src/objects/seqsplit/Makefile.seqsplit.lib
++++ b/src/objects/seqsplit/Makefile.seqsplit.lib
+@@ -2,3 +2,5 @@ LIB = seqsplit
+ SRC = seqsplit__ seqsplit___
+
+ WATCHERS = vasilche
++
++DLL_LIB = xser
+diff --git a/src/objects/submit/Makefile.submit.lib b/src/objects/submit/Makefile.submit.lib
+index 74798f8..34dd5a8 100644
+--- a/src/objects/submit/Makefile.submit.lib
++++ b/src/objects/submit/Makefile.submit.lib
+@@ -1,2 +1,3 @@
+ LIB = submit
+ SRC = submit__ submit___
++DLL_LIB = xser xncbi # lds
+diff --git a/src/objects/taxon1/Makefile.taxon1.lib b/src/objects/taxon1/Makefile.taxon1.lib
+index 61658ab..d735117 100644
+--- a/src/objects/taxon1/Makefile.taxon1.lib
++++ b/src/objects/taxon1/Makefile.taxon1.lib
+@@ -3,3 +3,5 @@ LIB = taxon1
+ SRC = taxon1__ taxon1___ taxon1 cache utils ctreecont
+
+ WATCHERS = domrach
++
++DLL_LIB = xser
+diff --git a/src/objects/valerr/Makefile.valerr.lib b/src/objects/valerr/Makefile.valerr.lib
+index b202355..9699bb2 100644
+--- a/src/objects/valerr/Makefile.valerr.lib
++++ b/src/objects/valerr/Makefile.valerr.lib
+@@ -2,3 +2,5 @@ LIB = valerr
+ SRC = valerr__ valerr___
+
+ ASN_DEP = seqset
++
++DLL_LIB = xser
+diff --git a/src/objects/valid/Makefile.valid.lib b/src/objects/valid/Makefile.valid.lib
+index 86a00a0..ee7402f 100644
+--- a/src/objects/valid/Makefile.valid.lib
++++ b/src/objects/valid/Makefile.valid.lib
+@@ -1,3 +1,5 @@
+ # $Id: Makefile.valid.lib 156738 2009-04-07 16:35:10Z ucko $
+ LIB = valid
+ SRC = valid__ valid___
++
++DLL_LIB = xser
+diff --git a/src/objects/variation/Makefile.variation.lib b/src/objects/variation/Makefile.variation.lib
+index f21f84a..b08e210 100644
+--- a/src/objects/variation/Makefile.variation.lib
++++ b/src/objects/variation/Makefile.variation.lib
+@@ -1,2 +1,3 @@
+ LIB = variation
+ SRC = variation__ variation___
++DLL_LIB = xser
+diff --git a/src/objmgr/util/Makefile.util.lib b/src/objmgr/util/Makefile.util.lib
+index 90eeee0..138e836 100644
+--- a/src/objmgr/util/Makefile.util.lib
++++ b/src/objmgr/util/Makefile.util.lib
+@@ -10,3 +10,4 @@ LIB = xobjutil
+
+ WATCHERS = ucko vasilche
+
++DLL_LIB = xser xobjmgr
+diff --git a/src/objtools/align_format/Makefile.align_format.lib b/src/objtools/align_format/Makefile.align_format.lib
+index 4b3e59e..94fc319 100644
+--- a/src/objtools/align_format/Makefile.align_format.lib
++++ b/src/objtools/align_format/Makefile.align_format.lib
+@@ -18,3 +18,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
+ # LIB_OR_DLL = dll
+
+ WATCHERS = zaretska jianye madden camacho
++
++DLL_LIB = seqdb blastdb
+diff --git a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
+index 25898aa..92d4d59 100644
+--- a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
++++ b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
+@@ -29,3 +29,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
+ WATCHERS = maning camacho
++
++DLL_LIB = blastdb
+diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
+index 80af69f..704ed7a 100644
+--- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
++++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
+@@ -6,3 +6,6 @@ SRC = bdbloader cached_sequence local_blastdb_adapter
+ ASN_DEP = blastdb seqset
+
+ WATCHERS = camacho
++
++DLL_LIB = seqdb
++
+diff --git a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
+index f2b2b49..a8ee667 100644
+--- a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
++++ b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
+@@ -12,6 +12,6 @@ LIB = ncbi_xreader
+ LIB_OR_DLL = both
+
+ # Dependencies for shared library
+-DLL_LIB =
++DLL_LIB = xcompress
+
+ WATCHERS = vasilche
+diff --git a/src/objtools/readers/Makefile.xobjread.lib b/src/objtools/readers/Makefile.xobjread.lib
+index 0fbffd4..4ca9fed 100644
+--- a/src/objtools/readers/Makefile.xobjread.lib
++++ b/src/objtools/readers/Makefile.xobjread.lib
+@@ -19,5 +19,4 @@ SRC = read_util format_guess_ex \
+ best_feat_finder source_mod_parser fasta_exception
+
+
+-DLL_LIB = creaders
+-
++DLL_LIB = creaders xncbi seq biblio seqset
+diff --git a/src/objtools/readers/Makefile.xobjreadex.lib b/src/objtools/readers/Makefile.xobjreadex.lib
+index 85eefe2..f238782 100644
+--- a/src/objtools/readers/Makefile.xobjreadex.lib
++++ b/src/objtools/readers/Makefile.xobjreadex.lib
+@@ -8,4 +8,4 @@ LIB = xobjreadex
+ SRC = glimmer_reader idmapper idmapper_builtin idmapper_config \
+ idmapper_database source_mod_parser_wrapper
+
+-DLL_LIB = xobjread
++DLL_LIB = xobjread xncbi xutil seq xobjmgr
+diff --git a/src/objtools/simple/Makefile.xobjsimple.lib b/src/objtools/simple/Makefile.xobjsimple.lib
+index dab25d6..a29b960 100644
+--- a/src/objtools/simple/Makefile.xobjsimple.lib
++++ b/src/objtools/simple/Makefile.xobjsimple.lib
+@@ -10,3 +10,4 @@ ASN_DEP = seqset
+ LIB = xobjsimple
+ SRC = simple_om
+
++DLL_LIB = xobjmgr
+diff --git a/src/objtools/validator/Makefile.validator.lib b/src/objtools/validator/Makefile.validator.lib
+index 80a74d8..69c4ef6 100644
+--- a/src/objtools/validator/Makefile.validator.lib
++++ b/src/objtools/validator/Makefile.validator.lib
+@@ -19,3 +19,5 @@ NOOPT_CXX = $(CXX_WRAPPER) $(CXX) $(CXXFLAGS_ALL:-xO%=)
+
+ lat_lon_country_map.o: $(srcdir)/lat_lon_country_map.cpp
+ $(NOOPT_CXX) $(srcdir)/lat_lon_country_map.cpp -o $@ $(CXX_FILTER)
++
++DLL_LIB = xncbi xobjutil xalnmgr
+diff --git a/src/serial/Makefile.serial.lib b/src/serial/Makefile.serial.lib
+index 2563b5f..efad054 100644
+--- a/src/serial/Makefile.serial.lib
++++ b/src/serial/Makefile.serial.lib
+@@ -19,3 +19,5 @@ SRC = \
+ LIB = xser
+
+ WATCHERS = gouriano
++
++DLL_LIB = xncbi xutil
+diff --git a/src/serial/soap/Makefile.soap.lib b/src/serial/soap/Makefile.soap.lib
+index e77d4ee..3b28bc4 100644
+--- a/src/serial/soap/Makefile.soap.lib
++++ b/src/serial/soap/Makefile.soap.lib
+@@ -8,3 +8,5 @@ SRC = soap_message soap_readhook soap_writehook soap_client \
+ LIB = xsoap
+
+ WATCHERS = gouriano
++
++DLL_LIB = xncbi xutil xser xconnect
+diff --git a/src/serial/soap/Makefile.soap_server.lib b/src/serial/soap/Makefile.soap_server.lib
+index c961496..0ccb2f0 100644
+--- a/src/serial/soap/Makefile.soap_server.lib
++++ b/src/serial/soap/Makefile.soap_server.lib
+@@ -9,3 +9,5 @@ LIB = xsoap_server
+ REQUIRES = cgi
+
+ WATCHERS = gouriano
++
++DLL_LIB = xncbi xutil xcgi xsoap xser
+diff --git a/src/serial/test/Makefile.we_cpp.lib b/src/serial/test/Makefile.we_cpp.lib
+index 9877691..599ef5d 100644
+--- a/src/serial/test/Makefile.we_cpp.lib
++++ b/src/serial/test/Makefile.we_cpp.lib
+@@ -3,3 +3,4 @@ SRC = we_cpp__ we_cpp___
+
+ WATCHERS = gouriano
+
++DLL_LIB = xncbi xutil xser
+diff --git a/src/util/Makefile.util.lib b/src/util/Makefile.util.lib
+index f103ff1..829a71c 100644
+--- a/src/util/Makefile.util.lib
++++ b/src/util/Makefile.util.lib
+@@ -14,3 +14,5 @@ PROJ_TAG = core
+ LIBS = $(ORIG_LIBS)
+
+ WATCHERS = vakatov
++
++DLL_LIB = xncbi
+diff --git a/src/util/compress/api/Makefile.compress.lib b/src/util/compress/api/Makefile.compress.lib
+index ae22234..2ce803a 100644
+--- a/src/util/compress/api/Makefile.compress.lib
++++ b/src/util/compress/api/Makefile.compress.lib
+@@ -6,7 +6,7 @@ LIB = xcompress
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
+
+-DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB)
++DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB) xutil xncbi
+ LIBS = $(BZ2_LIBS) $(Z_LIBS) $(LZO_LIBS)
+
+ WATCHERS = ivanov
+diff --git a/src/util/qparse/Makefile.xqueryparse.lib b/src/util/qparse/Makefile.xqueryparse.lib
+index a003930..0505da7 100644
+--- a/src/util/qparse/Makefile.xqueryparse.lib
++++ b/src/util/qparse/Makefile.xqueryparse.lib
+@@ -7,3 +7,5 @@ query_parser_bison.tab.c : query_parser_bison.y
+ bison -v -p ncbi_q_ -o query_parser_bison.tab.c query_parser_bison.y
+
+ WATCHERS = kuznets
++
++DLL_LIB = xncbi xutil
+diff --git a/src/util/regexp/Makefile.regexp.lib b/src/util/regexp/Makefile.regexp.lib
+index 0f8d5e8..83a82af 100644
+--- a/src/util/regexp/Makefile.regexp.lib
++++ b/src/util/regexp/Makefile.regexp.lib
+@@ -10,3 +10,5 @@ LIB = regexp
+ CPPFLAGS = -I$(includedir)/util/regexp -DHAVE_CONFIG_H $(ORIG_CPPFLAGS)
+
+ WATCHERS = ivanov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/util/sequtil/Makefile.sequtil.lib b/src/util/sequtil/Makefile.sequtil.lib
+index c068a32..453c911 100644
+--- a/src/util/sequtil/Makefile.sequtil.lib
++++ b/src/util/sequtil/Makefile.sequtil.lib
+@@ -4,3 +4,5 @@ LIB = sequtil
+ SRC = sequtil sequtil_convert sequtil_convert_imp sequtil_manip sequtil_tables sequtil_shared
+
+ WATCHERS = shomrat
++
++DLL_LIB = xncbi xutil
+diff --git a/src/util/xregexp/Makefile.xregexp.lib b/src/util/xregexp/Makefile.xregexp.lib
+index 965fac4..3accea3 100644
+--- a/src/util/xregexp/Makefile.xregexp.lib
++++ b/src/util/xregexp/Makefile.xregexp.lib
+@@ -6,7 +6,7 @@ LIB = xregexp
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
+
+-DLL_LIB = $(PCRE_LIB)
++DLL_LIB = $(PCRE_LIB) xutil xncbi
+ LIBS = $(PCRE_LIBS)
+
+ WATCHERS = ivanov
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-conf-opts.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-conf-opts.patch
new file mode 100644
index 0000000..8209603
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-conf-opts.patch
@@ -0,0 +1,213 @@
+ src/build-system/configure | 34 +++++++++++++++++++++++-----------
+ src/build-system/configure.ac | 33 ++++++++++++++++++++++-----------
+ 2 files changed, 45 insertions(+), 22 deletions(-)
+
+diff --git a/src/build-system/configure b/src/build-system/configure
+index 82fc9ef..d31a4f2 100755
+--- a/src/build-system/configure
++++ b/src/build-system/configure
+@@ -924,7 +924,7 @@ Optional Packages:
+ --without-distcc do not automatically use distcc if available
+ --without-ncbi-c do not use NCBI C Toolkit
+ --without-sss do not use NCBI SSS libraries
+- --without-utils do not use NCBI SSS UTIL library
++ --without-sssutils do not use NCBI SSS UTIL library
+ --without-sssdb do not use NCBI SSS DB library
+ --with-included-sss use the in-tree copy of SSS
+ --with-z=DIR use zlib installation in DIR
+@@ -2835,12 +2835,12 @@ check ncbi-public strip pch caution ccache distcc \
+ ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+ geo included-geo \
+ z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
+-ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
++ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
+ bdb python jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
+ gif jpeg tiff png xpm magic curl 3psw \
+ local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench"
++serial objects dbapi app ctools gui algo internal gbench x"
+
+ x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+
+@@ -2864,6 +2864,7 @@ for x_arg in "$@" ; do
+ case "$x_arg" in
+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
++ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
+ { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
+ echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
+@@ -2876,6 +2877,7 @@ echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
+ | --with-universal=* | --with-tcheck=* \
+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
++ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
+ | [A-Z]*=* \
+ | --with-z=* | --with-bz2=* | --with-lzo=* \
+ | --with-pcre=* \
+@@ -3023,7 +3025,8 @@ echo "$as_me: error: --without-extra-action is not allowed" >&2;}
+ fi
+
+ case "$with_projects" in
+- "") if test -r projects; then
++ ""|yes)
++ if test -r projects; then
+ { echo "$as_me:$LINENO: using default projects file \"projects\"." >&5
+ echo "$as_me: using default projects file \"projects\"." >&6;}
+ with_projects=projects
+@@ -3049,6 +3052,16 @@ echo "$as_me: WARNING: default projects file \"projects\" is a dangling link." >
+ ;;
+ esac
+
++if test -n "$with_projects"; then
++ case "$with_projects" in
++ /* ) abs_projects=$with_projects ;;
++ yes) abs_projects=$srcdir/projects ;;
++ * ) abs_projects=$srcdir/$with_projects ;;
++ esac
++ test -r "$abs_projects" || \
++ as_fn_error $? "unable to read requested projects file \"$abs_projects\"." "$LINENO" 5
++fi
++
+
+ #### Always define this
+
+@@ -32712,7 +32725,7 @@ else
+ sep=", "
+ fi
+ if test -n "$reason" -a "$with_internal" = "yes"; then
+- if test -z "$with_projects" -o "$with_projects" = "no"; then
++ if test -z "$with_projects"; then
+ { { echo "$as_me:$LINENO: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&5
+ echo "$as_me: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&2;}
+ { (exit 1); exit 1; }; }
+@@ -34949,11 +34962,9 @@ if test "$with_flat_makefile" != "no"; then
+ else
+ cfm_flags='-remoteptb'
+ fi
+- case "$with_projects" in
+- yes ) cfm_flags="$cfm_flags -p projects" ;;
+- no | '' ) ;;
+- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
+- esac
++ if test -n "$with_projects"; then
++ cfm_flags="$cfm_flags -p $with_projects"
++ fi
+ if test "$with_configure_dialog" = yes; then
+ cfm_flags="$cfm_flags -cfg"
+ fi
+@@ -34997,7 +35008,8 @@ lib)
+ esac
+
+ if test -n "$with_projects"; then
+- build_proj="To build selected projects: cd $builddir && make all_p"
++ build_proj="To build selected projects (as listed in \"$with_projects\"):
++ cd $builddir && make all_p"
+ fi
+
+ cat << EOCONF
+diff --git a/src/build-system/configure.ac b/src/build-system/configure.ac
+index 7b733af..3b55bf5 100644
+--- a/src/build-system/configure.ac
++++ b/src/build-system/configure.ac
+@@ -222,7 +222,7 @@ AC_ARG_WITH(ncbi-c,
+ AC_ARG_WITH(sss,
+ [ --without-sss do not use NCBI SSS libraries])
+ AC_ARG_WITH(sssutils,
+- [ --without-utils do not use NCBI SSS UTIL library])
++ [ --without-sssutils do not use NCBI SSS UTIL library])
+ AC_ARG_WITH(sssdb,
+ [ --without-sssdb do not use NCBI SSS DB library])
+ AC_ARG_WITH(included-sss,
+@@ -462,12 +462,12 @@ check ncbi-public strip pch caution ccache distcc \
+ ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+ geo included-geo \
+ z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
+-ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
++ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
+ bdb python jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
+ gif jpeg tiff png xpm magic curl 3psw \
+ local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench"
++serial objects dbapi app ctools gui algo internal gbench x"
+
+ changequote(, )dnl
+ x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+@@ -493,6 +493,7 @@ for x_arg in "$@" ; do
+ case "$x_arg" in
+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
++ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
+ AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
+ ;;
+@@ -503,6 +504,7 @@ for x_arg in "$@" ; do
+ | --with-universal=* | --with-tcheck=* \
+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
++ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
+ | [[A-Z]*=*] \
+ | --with-z=* | --with-bz2=* | --with-lzo=* \
+ | --with-pcre=* \
+@@ -581,7 +583,8 @@ if test "$with_extra_action" = "no" ; then
+ fi
+
+ case "$with_projects" in
+- "") if test -r projects; then
++ ""|yes)
++ if test -r projects; then
+ AC_MSG_NOTICE([using default projects file "projects".])
+ with_projects=projects
+ AC_SUBST(PROJECTS, "\$(top_srcdir)/projects")
+@@ -599,6 +602,15 @@ case "$with_projects" in
+ * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
+ esac
+
++if test -n "$with_projects"; then
++ case "$with_projects" in
++ /* ) abs_projects=$with_projects ;;
++ yes) abs_projects=$srcdir/projects ;;
++ * ) abs_projects=$srcdir/$with_projects ;;
++ esac
++ test -r "$abs_projects" || \
++ AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
++fi
+
+ #### Always define this
+ AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
+@@ -6198,7 +6210,7 @@ else
+ sep=", "
+ fi
+ if test -n "$reason" -a "$with_internal" = "yes"; then
+- if test -z "$with_projects" -o "$with_projects" = "no"; then
++ if test -z "$with_projects"; then
+ AC_MSG_ERROR([--with-internal: Cannot build INTERNAL projects: missing $reason])
+ else
+ AC_MSG_WARN([--with-internal: Cannot build all INTERNAL projects: missing $reason])
+@@ -6807,11 +6819,9 @@ if test "$with_flat_makefile" != "no"; then
+ else
+ cfm_flags='-remoteptb'
+ fi
+- case "$with_projects" in
+- yes ) cfm_flags="$cfm_flags -p projects" ;;
+- no | '' ) ;;
+- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
+- esac
++ if test -n "$with_projects"; then
++ cfm_flags="$cfm_flags -p $with_projects"
++ fi
+ if test "$with_configure_dialog" = yes; then
+ cfm_flags="$cfm_flags -cfg"
+ fi
+@@ -6854,7 +6864,8 @@ lib)
+ esac
+
+ if test -n "$with_projects"; then
+- build_proj="To build selected projects: cd $builddir && make all_p"
++ build_proj="To build selected projects (as listed in \"$with_projects\"):
++ cd $builddir && make all_p"
+ fi
+
+ cat << EOCONF
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
index 9806b41..439e917 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
@@ -4,7 +4,7 @@
EAPI=5
-inherit eutils flag-o-matic multilib toolchain-funcs
+inherit autotools eutils flag-o-matic multilib toolchain-funcs
MY_TAG="Jun_15_2010"
MY_Y="${MY_TAG/*_/}"
@@ -68,70 +68,6 @@ DEPEND="
dev-libs/libpcre"
# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
-# configure options, may want to expose some
-# --without-debug build non-debug versions of libs and apps
-# --without-optimization turn off optimization flags in non-debug mode
-# --with-profiling build profiled versions of libs and apps
-# --with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
-# --with-dll build all libraries as DLLs
-# --with-static build all libraries statically even if --with-dll
-# --with-static-exe build all executables as statically as possible
-# --with-plugin-auto-load always enable the plugin manager by default
-# --with-bin-release build executables suitable for public release
-# --with-mt compile in a MultiThread-safe manner
-# --with-64 compile to 64-bit code
-# --with-universal build universal binaries on Mac OS X
-# --with-universal=CPUs build universal binaries targeting the given CPUs
-# --without-exe do not build executables
-# --with-runpath= hard-code the runtime path to DLLs
-# --with-lfs enable large file support to the extent possible
-# --with-extra-action= script to call after the configuration is complete
-# --with-autodep automatic generation of dependencies (GNU make)
-# --with-build-root=DIR specify a non-default build directory name
-# --with-fake-root=DIR appear to have been built under DIR
-# --without-suffix no Release/Debug, MT or DLL sfx in the build dir name
-# --with-hostspec add full host specs to the build dir name
-# --without-version don't always include the cplr ver in the bd name
-# --with-build-root-sfx=X add a user-specified suffix to the build dir name
-# --without-execopy do not copy built executables to the BIN area
-# --with-bincopy populate lib and bin with copies, not hard links
-# --with-lib-rebuilds ensure that apps use up-to-date libraries
-# --with-lib-rebuilds=ask ask whether to update each app's libraries
-# --without-deactivation keep old copies of libraries that no longer build
-# --without-makefile-auto-update do not auto-update generated makefiles
-# --with-projects=FILE build projects listed in FILE by default
-# --without-flat-makefile do not generate an all-encompassing flat makefile
-# --with-configure-dialog allow interactive flat makefile project selection
-# --with-saved-settings=F load configuration settings from the file F
-# --with-check run test suite after the build
-# --with-check-tools=... use the specified tools for testing
-# --with-ncbi-public ensure compatibility for all in-house platforms
-# --with-strip strip binaries at build time
-# --with-pch use precompiled headers if possible
-# --with-caution cancel configuration unconditionally when in doubt
-# --without-caution proceed without asking when in doubt
-# --without-ccache do not automatically use ccache if available
-# --without-distcc do not automatically use distcc if available
-# --without-ncbi-c do not use NCBI C Toolkit
-# --without-sss do not use NCBI SSS libraries
-# --without-utils do not use NCBI SSS UTIL library
-# --without-sssdb do not use NCBI SSS DB library
-# --with-included-sss use the in-tree copy of SSS
-
-# --without-local-lbsm turn off support for IPC with locally running LBSMD
-# --without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
-# --without-connext do not build non-public CONNECT library extensions
-# --without-serial do not build the serialization library and tools
-# --without-objects do not generate/build serializeable objects from ASNs
-# --without-dbapi do not build database connectivity libraries
-# --without-app do not build standalone applications like ID1_FETCH
-# --without-ctools do not build NCBI C Toolkit based projects
-# --without-gui do not build most graphical projects
-# --without-algo do not build CPU-intensive algorithms
-# --without-internal do not build internal projects
-# --with-gbench ensure that Genome Workbench can be built
-# --without-gbench do not build Genome Workbench
-
RDEPEND="${DEPEND}"
S="${WORKDIR}/${MY_P}"
@@ -162,7 +98,17 @@ src_prepare() {
# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
+
+ local PATCHES=(
+ "${FILESDIR}"/${P}-conf-opts.patch
+ "${FILESDIR}"/${P}-as-needed.patch
+ )
+ epatch ${PATCHES[@]}
+
tc-export CXX CC
+# cd src/build-system || die
+# eaclocal -I.
+# eautoconf
}
src_configure() {
@@ -175,54 +121,54 @@ src_configure() {
#--with-bin-release build executables suitable for public release
# no dll and such
#--with-64 compile to 64-bit code
- # --with-universal build universal binaries on Mac OS X
- # --with-universal=CPUs build universal binaries targeting the given CPUs
- # --without-exe do not build executables
+ #--with-universal build universal binaries on Mac OS X
+ #--with-universal=CPUs build universal binaries targeting the given CPUs
+ #--without-exe do not build executables
#--with-relative-runpath=P specify an executable-relative DLL search path
- # --with-hard-runpath hard-code runtime path, ignoring LD_LIBRARY_PATH
- # --with-limited-linker don't attempt to build especially large projects
+ #--with-hard-runpath hard-code runtime path, ignoring LD_LIBRARY_PATH
+ #--with-limited-linker don't attempt to build especially large projects
#--with-extra-action= script to call after the configuration is complete
#--with-autodep automatic generation of dependencies (GNU make)
- # --with-fake-root=DIR appear to have been built under DIR
+ #--with-fake-root=DIR appear to have been built under DIR
#--with-build-root-sfx=X add a user-specified suffix to the build dir name
- # --without-execopy do not copy built executables to the BIN area
+ #--without-execopy do not copy built executables to the BIN area
#--with-lib-rebuilds ensure that apps use up-to-date libraries
- # --with-lib-rebuilds=ask ask whether to update each app's libraries
- # --without-deactivation keep old copies of libraries that no longer build
- # --without-makefile-auto-update do not auto-update generated makefiles
- # --with-projects=FILE build projects listed in FILE by default
- # --without-flat-makefile do not generate an all-encompassing flat makefile
- # --with-configure-dialog allow interactive flat makefile project selection
- # --with-saved-settings=F load configuration settings from the file F
- #-with-check-tools=... use the specified tools for testing
- # --with-ncbi-public ensure compatibility for all in-house platforms
+ #--with-lib-rebuilds=ask ask whether to update each app's libraries
+ #--without-deactivation keep old copies of libraries that no longer build
+ #--without-makefile-auto-update do not auto-update generated makefiles
+ #--with-projects=FILE build projects listed in FILE by default
+ #--without-flat-makefile do not generate an all-encompassing flat makefile
+ #--with-configure-dialog allow interactive flat makefile project selection
+ #--with-saved-settings=F load configuration settings from the file F
+ #--with-check-tools=... use the specified tools for testing
+ #--with-ncbi-public ensure compatibility for all in-house platforms
#--with-sybase-local=DIR use local SYBASE install (DIR is optional)
- # --with-sybase-new use newer SYBASE install (12.5 rather than 12.0)
+ #--with-sybase-new use newer SYBASE install (12.5 rather than 12.0)
#--without-ftds-renamed do not rename Sybase DBLIB symbols in built-in FTDS
#--without-sp do not use SP libraries
#--without-orbacus do not use ORBacus CORBA libraries
- # --with-orbacus=DIR use ORBacus installation in DIR
+ #--with-orbacus=DIR use ORBacus installation in DIR
#--with-jni(=JDK-DIR) build Java bindings (against the JDK in JDK-DIR)
#--with-sablot=DIR use Sablotron installation in DIR
- # --without-sablot, do not use Sablotron
+ #--without-sablot, do not use Sablotron
#--with-oechem=DIR use OpenEye OEChem installation in DIR
- # --without-oechem do not use OEChem
- # --with-sge=DIR use Sun Grid Engine installation in DIR
- # --without-sge do not use Sun Grid Engine
+ #--without-oechem do not use OEChem
+ #--with-sge=DIR use Sun Grid Engine installation in DIR
+ #--without-sge do not use Sun Grid Engine
#--with-magic=DIR use libmagic installation in DIR
- # --without-magic do not use libmagic
+ #--without-magic do not use libmagic
#--without-local-lbsm turn off support for IPC with locally running LBSMD
- # --without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
- # --without-connext do not build non-public CONNECT library extensions
- # --without-serial do not build the serialization library and tools
- # --without-objects do not generate/build serializeable objects from ASNs
- # --without-dbapi do not build database connectivity libraries
- # --without-app do not build standalone applications like ID1_FETCH
- # --without-gui do not build most graphical projects
- # --without-algo do not build CPU-intensive algorithms
+ #--without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
+ #--without-connext do not build non-public CONNECT library extensions
+ #--without-serial do not build the serialization library and tools
+ #--without-objects do not generate/build serializeable objects from ASNs
+ #--without-dbapi do not build database connectivity libraries
+ #--without-app do not build standalone applications like ID1_FETCH
+ #--without-gui do not build most graphical projects
+ #--without-algo do not build CPU-intensive algorithms
#--without-internal do not build internal projects
- # --with-gbench ensure that Genome Workbench can be built
- # --without-gbench do not build Genome Workbench
+ #--with-gbench ensure that Genome Workbench can be built
+ #--without-gbench do not build Genome Workbench
myconf+=(
--with-dll
--with-lfs
@@ -234,17 +180,18 @@ src_configure() {
--without-strip
--without-ccache
--without-distcc
- --with-ncbi-c
+# --with-ncbi-c
--without-ctools
- --with-sss
- --with-utils
- --with-sssdb
- --with-included-sss
+# --with-sss
+# --with-sssutils
+# --with-sssdb
+# --with-included-sss
--with-z="${EPREFIX}"/usr
--with-bz2="${EPREFIX}"/usr
--with-muparser="${EPREFIX}"/usr
--without-sybase
-# --with-3psw=std:netopt
+ --with-autodep
+# --with-3psw=std:netopt favor standard (system) builds of the above pkgs
$(use_with debug)
$(use_with debug max-debug)
$(use_with debug symbols)
@@ -265,7 +212,7 @@ src_configure() {
$(use_with mesa mesa "${EPREFIX}"/usr)
$(use_with opengl glut "${EPREFIX}"/usr)
$(use_with opengl glew "${EPREFIX}"/usr)
- $(use_with opengl glew-m)
+ $(use_with opengl glew-mx)
$(use_with wxwidgets wxwidgets "${EPREFIX}"/usr)
$(use_with wxwidgets wxwidgets-ucs)
$(use_with freetype freetype "${EPREFIX}"/usr)
@@ -277,18 +224,19 @@ src_configure() {
$(use_with sqlite sqlite3 "${EPREFIX}"/usr)
$(use_with icu icu "${EPREFIX}"/usr)
$(use_with expat expat "${EPREFIX}"/usr)
- $(use_with xml libxml2 "${EPREFIX}"/usr)
+ $(use_with xml libxml "${EPREFIX}"/usr)
$(use_with xml libxslt "${EPREFIX}"/usr)
$(use_with xerces xerces "${EPREFIX}"/usr)
$(use_with hdf5 hdf5 "${EPREFIX}"/usr)
$(use_with xalan xalan "${EPREFIX}"/usr)
- $(use_with gif gif "${EPREFIX}"/usr)
+# $(use_with gif gif "${EPREFIX}"/usr)
$(use_with jpeg jpeg "${EPREFIX}"/usr)
$(use_with tiff tiff "${EPREFIX}"/usr)
$(use_with png png "${EPREFIX}"/usr)
$(use_with xpm xpm "${EPREFIX}"/usr)
$(use_with curl curl "${EPREFIX}"/usr)
- $(use_with X x "${EPREFIX}"/usr)
+# $(use_with X x "${EPREFIX}"/usr)
+ $(use_with X x)
)
# http://www.ncbi.nlm.nih.gov/books/NBK7167/
@@ -298,16 +246,16 @@ src_configure() {
# copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
# otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9
- "${S}"/configure \
- --prefix="${EPREFIX}"/usr \
- --build=x86_64-pc-linux-gnu \
- --host=x86_64-pc-linux-gnu \
- --infodir=/usr/share/info \
- --datadir=/usr/share \
- --sysconfdir=/etc \
- --localstatedir=/var/lib \
- --libdir=/usr/lib64 \
- ${myconf[@]} || die
+ einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}"/usr --libdir=/usr/lib64 ${myconf[@]}"
+
+# bash \
+# ./src/build-system/configure \
+# cd src/build-system || die
+ econf \
+ --srcdir="${S}" \
+ --prefix="${EPREFIX}"/usr \
+ --libdir=/usr/lib64 \
+ ${myconf[@]} || die
#--without-debug \
# --with-bin-release \
# --with-bincopy \
@@ -326,7 +274,9 @@ src_compile() {
# all_r would ignore the --with-projects contents and build more
# emake all_r -C GCC*-Release*/build || die
# all_p with compile only selected/required components
- emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
+# cd "${S}"_build &&\
+ emake all_p -C "${S}"_build/build
+# emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
}
src_install() {
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-09-13 16:08 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-09-13 16:08 UTC (permalink / raw
To: gentoo-commits
commit: 2936a6fec14426e76f9e3f095b82e25eddcc1072
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 13 16:09:46 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 13 16:09:46 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2936a6fe
add glew to dependencies inferrred via mesa; fix lib/libxobjread.so: undefined reference to 'AlignmentFileFree' message by upstream patch
---
sci-biology/ncbi-tools++/ChangeLog | 7 +++++++
.../files/ncbi-tools++-9.0.0-fix-creaders-linking.patch | 10 ++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 10 ++++++++--
3 files changed, 25 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index 270521c..711ef6c 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -2,6 +2,13 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ ncbi-tools++-9.0.0-r1.ebuild,
+ +files/ncbi-tools++-9.0.0-fix-creaders-linking.patch:
+ add glew to dependencies inferrred via mesa
+ fix lib/libxobjread.so: undefined reference to 'AlignmentFileFree' message by
+ upstream patch
+
12 Jun 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild:
Drop empty line
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch
new file mode 100644
index 0000000..1380764
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch
@@ -0,0 +1,10 @@
+--- ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (revision 413271)
++++ ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (working copy)
+@@ -4,7 +4,7 @@
+ APP = alnmrg
+ SRC = alnmrg
+ LIB = xalnmgr xobjread ncbi_xloader_blastdb seqdb xobjutil submit blastdb \
+- tables $(OBJMGR_LIBS)
++ tables creaders $(OBJMGR_LIBS)
+
+ LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
index 8c190e4..33ee6fb 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
@@ -38,11 +38,13 @@ DEPEND="
sqlite? ( dev-db/sqlite )
sqlite3? ( dev-db/sqlite:3 )
mysql? ( virtual/mysql )
- gnutls? ( net-libs/gnutls )
+ gnutls? ( net-libs/gnutls[lzo] )
ssl? ( dev-libs/openssl )
fltk? ( x11-libs/fltk )
opengl? ( virtual/opengl )
- mesa? ( media-libs/mesa )
+ mesa? ( media-libs/mesa
+ media-libs/glew
+ )
glut? ( media-libs/freeglut )
freetype? ( media-libs/freetype )
fastcgi? ( www-apache/mod_fastcgi )
@@ -67,6 +69,9 @@ DEPEND="
dev-libs/libpcre"
# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
+
+# seems muParser is required, also glew is required. configure exitss otherwise
+
RDEPEND="${DEPEND}"
S="${WORKDIR}/${MY_P}"
@@ -100,6 +105,7 @@ src_prepare() {
local PATCHES=(
"${FILESDIR}"/${P}-conf-opts.patch
"${FILESDIR}"/${P}-as-needed.patch
+ "${FILESDIR}"/${P}-fix-creaders-linking.patch
)
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-09-13 16:45 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-09-13 16:45 UTC (permalink / raw
To: gentoo-commits
commit: 1f50f92899961b2c6522f8a071184138ff5aa94e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 13 16:46:50 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 13 16:46:50 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1f50f928
Latest release which needs so far only the two Gentoo patches. Would be better to drop from their filename to avoid their duplication I think.
---
.../files/ncbi-tools++-12.0.0-as-needed.patch | 1864 ++++++++++++++++++++
.../files/ncbi-tools++-12.0.0-conf-opts.patch | 213 +++
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 306 ++++
3 files changed, 2383 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
new file mode 100644
index 0000000..f5d6a3d
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
@@ -0,0 +1,1864 @@
+ src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib | 2 ++
+ src/algo/align/ngalign/Makefile.xngalign.lib | 2 ++
+ src/algo/align/nw/Makefile.xalgoalignnw.lib | 2 ++
+ src/algo/align/prosplign/Makefile.prosplign.lib | 2 ++
+ src/algo/align/splign/Makefile.xalgoalignsplign.lib | 2 ++
+ src/algo/blast/api/Makefile.xblast.lib | 2 +-
+ src/algo/blast/blastinput/Makefile.blastinput.lib | 2 +-
+ src/algo/blast/core/Makefile.blast.lib | 2 ++
+ src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib | 2 ++
+ src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib | 2 ++
+ src/algo/blast/format/Makefile.xblastformat.lib | 2 +-
+ src/algo/blast/gumbel_params/Makefile.gumbelparams.lib | 1 +
+ src/algo/cobalt/Makefile.cobalt.lib | 2 ++
+ src/algo/dustmask/Makefile.xalgodustmask.lib | 1 +
+ src/algo/gnomon/Makefile.gnomon.lib | 2 +-
+ src/algo/ms/formats/pepxml/Makefile.pepXML.lib | 2 ++
+ src/algo/ms/omssa/Makefile.xomssa.lib | 2 ++
+ src/algo/phy_tree/Makefile.xalgophytree.lib | 2 +-
+ src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib | 2 ++
+ src/algo/segmask/Makefile.xalgosegmask.lib | 1 +
+ src/algo/seqqa/Makefile.xalgoseqqa.lib | 2 ++
+ src/algo/sequence/Makefile.xalgoseq.lib | 2 ++
+ src/algo/structure/bma_refine/Makefile.xbma_refiner.lib | 3 +++
+ src/algo/structure/cd_utils/Makefile.xcd_utils.lib | 2 +-
+ src/algo/structure/struct_dp/Makefile.xstruct_dp.lib | 2 ++
+ src/algo/structure/struct_util/Makefile.xstruct_util.lib | 2 ++
+ src/algo/structure/threader/Makefile.xstruct_thread.lib | 2 ++
+ src/algo/text/Makefile.xalgotext.lib | 2 ++
+ src/algo/volume_merge/Makefile.xalgovmerge.lib | 2 ++
+ src/algo/winmask/Makefile.xalgowinmask.lib | 2 ++
+ src/cgi/Makefile.cgi.lib | 2 ++
+ src/cgi/Makefile.fcgi.lib | 2 ++
+ src/connect/Makefile.connssl.lib | 2 ++
+ src/connect/Makefile.xconnect.lib | 4 ++++
+ src/connect/Makefile.xthrserv.lib | 2 +-
+ src/connect/Makefile.xxconnect.lib | 2 ++
+ src/connect/services/Makefile.ncbi_xcache_netcache.lib | 2 +-
+ src/connect/services/Makefile.xconnserv.lib | 2 +-
+ src/connect/test/Makefile.conntest.lib | 2 ++
+ src/corelib/Makefile.test_boost.lib | 2 ++
+ src/corelib/Makefile.test_mt.lib | 2 ++
+ src/corelib/test/Makefile.pbacktest.lib | 2 ++
+ src/db/bdb/Makefile.bdb.lib | 4 ++++
+ src/db/bdb/Makefile.ncbi_xcache_bdb.lib | 2 +-
+ src/db/sqlite/Makefile.sqlitewrapp.lib | 3 +++
+ src/dbapi/Makefile.dbapi.lib | 5 +++++
+ src/dbapi/driver/Makefile.dbapi_driver.lib | 2 ++
+ src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib | 2 ++
+ src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib | 2 +-
+ src/dbapi/simple/Makefile.sdbapi.lib | 1 +
+ src/html/Makefile.html.lib | 2 ++
+ src/misc/cgi_redirect/Makefile.cgi_redirect.lib | 2 ++
+ src/misc/grid_cgi/Makefile.xgridcgi.lib | 2 ++
+ src/objects/access/Makefile.access.lib | 1 +
+ src/objects/biblio/Makefile.biblio.lib | 2 ++
+ src/objects/biotree/Makefile.biotree.lib | 2 ++
+ src/objects/blast/Makefile.blast.lib | 2 ++
+ src/objects/blast/Makefile.xnetblastcli.lib | 2 ++
+ src/objects/blastdb/Makefile.blastdb.lib | 2 ++
+ src/objects/blastxml/Makefile.blastxml.lib | 2 ++
+ src/objects/cdd/Makefile.cdd.lib | 2 ++
+ src/objects/cn3d/Makefile.cn3d.lib | 2 ++
+ src/objects/docsum/Makefile.docsum.lib | 2 ++
+ src/objects/entrez2/Makefile.entrez2.lib | 2 ++
+ src/objects/entrez2/Makefile.entrez2cli.lib | 2 ++
+ src/objects/entrezgene/Makefile.entrezgene.lib | 2 ++
+ src/objects/featdef/Makefile.featdef.lib | 2 ++
+ src/objects/gbseq/Makefile.gbseq.lib | 2 ++
+ src/objects/general/Makefile.general.lib | 2 ++
+ src/objects/genomecoll/Makefile.genome_collection.lib | 2 ++
+ src/objects/homologene/Makefile.homologene.lib | 2 ++
+ src/objects/id1/Makefile.id1.lib | 2 ++
+ src/objects/id1/Makefile.id1cli.lib | 2 ++
+ src/objects/id2/Makefile.id2.lib | 2 ++
+ src/objects/id2/Makefile.id2cli.lib | 2 ++
+ src/objects/insdseq/Makefile.insdseq.lib | 2 ++
+ src/objects/macro/Makefile.macro.lib | 2 ++
+ src/objects/medlars/Makefile.medlars.lib | 2 ++
+ src/objects/medline/Makefile.medline.lib | 2 ++
+ src/objects/mim/Makefile.mim.lib | 2 ++
+ src/objects/mla/Makefile.mla.lib | 2 ++
+ src/objects/mla/Makefile.mlacli.lib | 2 ++
+ src/objects/mmdb/Makefile.mmdb.lib | 2 ++
+ src/objects/ncbimime/Makefile.ncbimime.lib | 2 ++
+ src/objects/objprt/Makefile.objprt.lib | 2 ++
+ src/objects/omssa/Makefile.omssa.lib | 2 ++
+ src/objects/pcassay/Makefile.pcassay.lib | 2 ++
+ src/objects/pcsubstance/Makefile.pcsubstance.lib | 2 ++
+ src/objects/proj/Makefile.proj.lib | 2 ++
+ src/objects/pub/Makefile.pub.lib | 2 ++
+ src/objects/pubmed/Makefile.pubmed.lib | 2 ++
+ src/objects/remap/Makefile.remap.lib | 2 ++
+ src/objects/remap/Makefile.remapcli.lib | 2 ++
+ src/objects/scoremat/Makefile.scoremat.lib | 2 ++
+ src/objects/seq/Makefile.seq.lib | 2 ++
+ src/objects/seqcode/Makefile.seqcode.lib | 2 ++
+ src/objects/seqedit/Makefile.seqedit.lib | 1 +
+ src/objects/seqset/Makefile.seqset.lib | 1 +
+ src/objects/seqsplit/Makefile.seqsplit.lib | 2 ++
+ src/objects/seqtest/Makefile.seqtest.lib | 2 ++
+ src/objects/submit/Makefile.submit.lib | 1 +
+ src/objects/taxon1/Makefile.taxon1.lib | 2 ++
+ src/objects/taxon3/Makefile.taxon3.lib | 2 ++
+ src/objects/tinyseq/Makefile.tinyseq.lib | 2 ++
+ src/objects/valerr/Makefile.valerr.lib | 2 ++
+ src/objects/valid/Makefile.valid.lib | 2 ++
+ src/objects/variation/Makefile.variation.lib | 1 +
+ src/objmgr/split/Makefile.id2_split.lib | 2 +-
+ src/objmgr/util/Makefile.util.lib | 1 +
+ src/objtools/align/Makefile.xalntool.lib | 2 ++
+ src/objtools/align_format/Makefile.align_format.lib | 2 ++
+ src/objtools/alnmgr/Makefile.alnmgr.lib | 1 +
+ src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib | 2 ++
+ src/objtools/blast/gene_info_reader/Makefile.gene_info.lib | 2 ++
+ src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib | 2 ++
+ src/objtools/blast/seqdb_reader/Makefile.seqdb.lib | 2 ++
+ src/objtools/blast/seqdb_writer/Makefile.writedb.lib | 2 ++
+ src/objtools/blast/services/Makefile.blast_services.lib | 1 +
+ src/objtools/cddalignview/Makefile.cddalignview.lib | 2 ++
+ src/objtools/cleanup/Makefile.cleanup.lib | 2 +-
+ src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib | 3 +++
+ .../data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib | 2 ++
+ src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib | 2 ++
+ src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib | 2 +-
+ src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib | 2 ++
+ src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib | 2 ++
+ src/objtools/data_loaders/trace/Makefile.xloader_trace.lib | 2 ++
+ src/objtools/edit/Makefile.edit.lib | 2 ++
+ src/objtools/eutils/api/Makefile.eutils.lib | 2 ++
+ src/objtools/eutils/egquery/Makefile.egquery.lib | 2 ++
+ src/objtools/eutils/ehistory/Makefile.ehistory.lib | 2 ++
+ src/objtools/eutils/einfo/Makefile.einfo.lib | 2 ++
+ src/objtools/eutils/elink/Makefile.elink.lib | 2 ++
+ src/objtools/eutils/epost/Makefile.epost.lib | 2 ++
+ src/objtools/eutils/esearch/Makefile.esearch.lib | 2 ++
+ src/objtools/eutils/espell/Makefile.espell.lib | 2 ++
+ src/objtools/eutils/esummary/Makefile.esummary.lib | 2 ++
+ src/objtools/eutils/linkout/Makefile.linkout.lib | 2 ++
+ src/objtools/eutils/uilist/Makefile.uilist.lib | 2 ++
+ src/objtools/format/Makefile.xformat.lib | 2 ++
+ src/objtools/lds/Makefile.lds.lib | 2 +-
+ src/objtools/manip/Makefile.xobjmanip.lib | 2 ++
+ src/objtools/readers/Makefile.xobjread.lib | 3 +--
+ src/objtools/readers/Makefile.xobjreadex.lib | 2 +-
+ src/objtools/seqmasks_io/Makefile.seqmasks_io.lib | 2 +-
+ src/objtools/simple/Makefile.xobjsimple.lib | 1 +
+ src/objtools/snputil/Makefile.snputil.lib | 2 ++
+ src/objtools/validator/Makefile.validator.lib | 2 ++
+ src/objtools/writers/Makefile.xobjwrite.lib | 1 +
+ src/sample/app/asn/Makefile.sample_asn.lib | 2 ++
+ src/sample/app/soap/Makefile.soap_dataobj.lib | 2 ++
+ src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib | 2 ++
+ src/sample/lib/basic/Makefile.basic_sample_lib.lib | 2 ++
+ src/sample/lib/dtd/Makefile.dtd_sample_lib.lib | 2 ++
+ src/sample/lib/xsd/Makefile.xsd_sample_lib.lib | 2 ++
+ src/serial/Makefile.serial.lib | 2 ++
+ src/serial/soap/Makefile.soap.lib | 2 ++
+ src/serial/soap/Makefile.soap_server.lib | 2 ++
+ src/serial/test/Makefile.we_cpp.lib | 1 +
+ src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib | 2 +-
+ src/sra/sdk/libs/align/Makefile.align-writer.lib | 2 +-
+ src/util/Makefile.util.lib | 2 ++
+ src/util/compress/api/Makefile.compress.lib | 2 +-
+ src/util/qparse/Makefile.xqueryparse.lib | 2 ++
+ src/util/regexp/Makefile.regexp.lib | 2 ++
+ src/util/sequtil/Makefile.sequtil.lib | 2 ++
+ src/util/xregexp/Makefile.xregexp.lib | 2 +-
+ 167 files changed, 307 insertions(+), 23 deletions(-)
+
+diff --git a/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib b/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
+index c8851d8..35ae629 100644
+--- a/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
++++ b/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
+@@ -10,3 +10,5 @@ LIB = xalgocontig_assembly
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
++
++DLL_LIB = align_format blastinput dbapi_driver seq xalgoalignnw xalgodustmask xalnmgr xblast xncbi xobjmgr xobjutil xser # axf
+diff --git a/src/algo/align/ngalign/Makefile.xngalign.lib b/src/algo/align/ngalign/Makefile.xngalign.lib
+index d163f7c..ade88ce 100644
+--- a/src/algo/align/ngalign/Makefile.xngalign.lib
++++ b/src/algo/align/ngalign/Makefile.xngalign.lib
+@@ -15,3 +15,5 @@ LIB = xngalign
+
+ CXXFLAGS = $(FAST_CXXFLAGS) -I./.
+ LDFLAGS = $(FAST_LDFLAGS)
++
++DLL_LIB = seq xalgoalignutil xncbi blastinput xalgoalignnw align_format xcgi ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2
+diff --git a/src/algo/align/nw/Makefile.xalgoalignnw.lib b/src/algo/align/nw/Makefile.xalgoalignnw.lib
+index acc1ddf..acba81c 100644
+--- a/src/algo/align/nw/Makefile.xalgoalignnw.lib
++++ b/src/algo/align/nw/Makefile.xalgoalignnw.lib
+@@ -15,3 +15,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
+ WATCHERS = kiryutin
++
++DLL_LIB = access align_format dbapi_driver general seq writedb xncbi xser # axf
+diff --git a/src/algo/align/prosplign/Makefile.prosplign.lib b/src/algo/align/prosplign/Makefile.prosplign.lib
+index 248ee37..73143ad 100644
+--- a/src/algo/align/prosplign/Makefile.prosplign.lib
++++ b/src/algo/align/prosplign/Makefile.prosplign.lib
+@@ -10,3 +10,5 @@ LIB = prosplign
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
++
++DLL_LIB = align_format blastinput dbapi_driver general igblast seq xalgoalignutil xalnmgr xncbi xobjmgr xobjutil xser # axf
+diff --git a/src/algo/align/splign/Makefile.xalgoalignsplign.lib b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
+index d67680b..3d56789 100644
+--- a/src/algo/align/splign/Makefile.xalgoalignsplign.lib
++++ b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
+@@ -10,3 +10,5 @@ LIB = xalgoalignsplign
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
++
++DLL_LIB = access align_format blastinput dbapi_driver gene_info general seq seqdb xalgoalignnw xalgoalignutil xalgoseq xblast xncbi xobjmgr xobjutil xser xutil # axf prosplign
+diff --git a/src/algo/blast/api/Makefile.xblast.lib b/src/algo/blast/api/Makefile.xblast.lib
+index 073973b..c6a4c2c 100644
+--- a/src/algo/blast/api/Makefile.xblast.lib
++++ b/src/algo/blast/api/Makefile.xblast.lib
+@@ -78,7 +78,7 @@ SRC = $(SRC_C:%=.core_%) $(SRC_CXX)
+
+ LIB = xblast
+
+-DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS)
++DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS) seqdb xnetblast xnetblastcli xalgoblastdbindex xalgowinmask tables composition_adjustment xobjread
+
+ CFLAGS = $(FAST_CFLAGS)
+ # Strict gcc flags
+diff --git a/src/algo/blast/blastinput/Makefile.blastinput.lib b/src/algo/blast/blastinput/Makefile.blastinput.lib
+index bfb315c..2cd809a 100644
+--- a/src/algo/blast/blastinput/Makefile.blastinput.lib
++++ b/src/algo/blast/blastinput/Makefile.blastinput.lib
+@@ -24,7 +24,7 @@ SRC = $(SRC_CXX)
+
+ LIB = blastinput
+
+-DLL_LIB = xblast $(OBJMGR_LIBS)
++DLL_LIB = seqdb ncbi_xloader_blastdb ncbi_xloader_blastdb_rmt align_format xalnmgr xblast xcgi xobjread xobjutil ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2 xalnmgr xcgi
+
+ # should be redundant, given the above :-/
+ ASN_DEP = seqset xnetblast
+diff --git a/src/algo/blast/core/Makefile.blast.lib b/src/algo/blast/core/Makefile.blast.lib
+index 8e889a7..1326aee 100644
+--- a/src/algo/blast/core/Makefile.blast.lib
++++ b/src/algo/blast/core/Makefile.blast.lib
+@@ -23,3 +23,5 @@ LDFLAGS = $(FAST_LDFLAGS)
+
+
+ WATCHERS = coulouri maning madden camacho
++
++DLL_LIB = xutil
+diff --git a/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib b/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
+index fcfb9f9..0e762b4 100644
+--- a/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
++++ b/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
+@@ -14,3 +14,5 @@ LDFLAGS = $(FAST_LDFLAGS)
+ ASN_DEP = seqset
+
+ WATCHERS = morgulis
++
++DLL_LIB = dbapi_driver seq seqdb seqset xncbi xobjmgr xobjread xobjutil xser xutil # axf
+diff --git a/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib b/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
+index e64f111..475f4a1 100644
+--- a/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
++++ b/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
+@@ -10,3 +10,5 @@ LDFLAGS = $(FAST_LDFLAGS)
+ ASN_DEP = seqset
+
+ WATCHERS = morgulis
++
++DLL_LIB = dbapi_driver xncbi xobjmgr # axf
+diff --git a/src/algo/blast/format/Makefile.xblastformat.lib b/src/algo/blast/format/Makefile.xblastformat.lib
+index f7da067..9920332 100644
+--- a/src/algo/blast/format/Makefile.xblastformat.lib
++++ b/src/algo/blast/format/Makefile.xblastformat.lib
+@@ -7,6 +7,6 @@ SRC = blastfmtutil blastxml_format blast_format data4xmlformat build_archive vec
+
+ CPPFLAGS = $(ORIG_CPPFLAGS)
+
+-DLL_LIB = blastxml xhtml xcgi
++DLL_LIB = blastxml xhtml xcgi align_format general scoremat seq seqdb xalnmgr xblast xnetblast xobjmgr xobjutil blast_services ncbi_xloader_genbank xcgi # cobalt
+
+ WATCHERS = jianye zaretska madden camacho fongah2
+diff --git a/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib b/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
+index 316d4fa..844de85 100644
+--- a/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
++++ b/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
+@@ -11,3 +11,4 @@ LDFLAGS = $(FAST_LDFLAGS)
+
+ WATCHERS = boratyng madden camacho
+
++DLL_LIB = dbapi_driver xncbi xutil # axf
+diff --git a/src/algo/cobalt/Makefile.cobalt.lib b/src/algo/cobalt/Makefile.cobalt.lib
+index e618f67..b406cc5 100644
+--- a/src/algo/cobalt/Makefile.cobalt.lib
++++ b/src/algo/cobalt/Makefile.cobalt.lib
+@@ -14,3 +14,5 @@ ASN_DEP = seq seqset biotree xnetblast blastdb
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
++
++DLL_LIB = align_format dbapi_driver general igblast seq seqdb seqset xalgoalignnw xalgophytree xblast xncbi xnetblast xobjmgr xobjutil xser fastme # axf
+diff --git a/src/algo/dustmask/Makefile.xalgodustmask.lib b/src/algo/dustmask/Makefile.xalgodustmask.lib
+index 84e2568..3632356 100644
+--- a/src/algo/dustmask/Makefile.xalgodustmask.lib
++++ b/src/algo/dustmask/Makefile.xalgodustmask.lib
+@@ -11,3 +11,4 @@ SRC = symdust
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++DLL_LIB = dbapi_driver seq xncbi xobjmgr # axf
+diff --git a/src/algo/gnomon/Makefile.gnomon.lib b/src/algo/gnomon/Makefile.gnomon.lib
+index af363c0..3235647 100644
+--- a/src/algo/gnomon/Makefile.gnomon.lib
++++ b/src/algo/gnomon/Makefile.gnomon.lib
+@@ -6,7 +6,7 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) \
+ gnomon_engine gnomon_objmgr score gnomon_model parse hmm gnomon_seq asn1 chainer id_handler \
+ annot select_alignments_alt
+ LIB = xalgognomon
+-DLL_LIB = xobjutil $(SOBJMGR_LIBS)
++DLL_LIB = xobjutil $(SOBJMGR_LIBS) xalgoseq
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+diff --git a/src/algo/ms/formats/pepxml/Makefile.pepXML.lib b/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
+index 686dd70..98f57b2 100644
+--- a/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
++++ b/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
+@@ -2,3 +2,5 @@ WATCHERS = lewisg slottad
+
+ LIB = pepXML
+ SRC = pepXML__ pepXML___
++
++DLL_LIB = access align_format dbapi_driver xncbi xser # axf
+diff --git a/src/algo/ms/omssa/Makefile.xomssa.lib b/src/algo/ms/omssa/Makefile.xomssa.lib
+index 872b92e..78261eb 100644
+--- a/src/algo/ms/omssa/Makefile.xomssa.lib
++++ b/src/algo/ms/omssa/Makefile.xomssa.lib
+@@ -19,3 +19,5 @@ LIB = xomssa
+ CFLAGS = $(FAST_CFLAGS)
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
++
++DLL_LIB = xutil omssa pepXML xcompress xconnect seqdb xblast xregexp
+diff --git a/src/algo/phy_tree/Makefile.xalgophytree.lib b/src/algo/phy_tree/Makefile.xalgophytree.lib
+index 5964ef4..8163366 100644
+--- a/src/algo/phy_tree/Makefile.xalgophytree.lib
++++ b/src/algo/phy_tree/Makefile.xalgophytree.lib
+@@ -6,7 +6,7 @@ ASN_DEP = biotree
+
+ SRC = bio_tree phy_node dist_methods lex.newick newick.tab tree_to_dist_mat phytree_calc
+ LIB = xalgophytree
+-DLL_LIB = biotree
++DLL_LIB = biotree seq xalnmgr xobjutil # fastme
+
+ # The -I flag is necessary because filenames in #line directives throw
+ # off some compilers (GCC 2.95 at least). :-/
+diff --git a/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib b/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
+index 15d7440..fab9207 100644
+--- a/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
++++ b/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
+@@ -10,3 +10,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
+ ASN_DEP = biotree seqset taxon1
+
+ WATCHERS = boratyng
++
++DLL_LIB = access align_format biotree dbapi_driver fastme gene_info seq taxon1 xalgophytree xncbi xobjmgr xobjutil xser # axf
+diff --git a/src/algo/segmask/Makefile.xalgosegmask.lib b/src/algo/segmask/Makefile.xalgosegmask.lib
+index bd011c1..97281ec 100644
+--- a/src/algo/segmask/Makefile.xalgosegmask.lib
++++ b/src/algo/segmask/Makefile.xalgosegmask.lib
+@@ -11,3 +11,4 @@ SRC = segmask
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++DLL_LIB = align_format xobjmgr
+diff --git a/src/algo/seqqa/Makefile.xalgoseqqa.lib b/src/algo/seqqa/Makefile.xalgoseqqa.lib
+index b1bea47..a0e5b1b 100644
+--- a/src/algo/seqqa/Makefile.xalgoseqqa.lib
++++ b/src/algo/seqqa/Makefile.xalgoseqqa.lib
+@@ -12,3 +12,5 @@ LIB = xalgoseqqa
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
++
++DLL_LIB = access align_format dbapi_driver entrez2cli gene_info general seq seqtest xalgognomon xalgoseq xalnmgr xncbi xobjmgr xobjutil xser # axf
+diff --git a/src/algo/sequence/Makefile.xalgoseq.lib b/src/algo/sequence/Makefile.xalgoseq.lib
+index 51f4cd7..724e939 100644
+--- a/src/algo/sequence/Makefile.xalgoseq.lib
++++ b/src/algo/sequence/Makefile.xalgoseq.lib
+@@ -13,3 +13,5 @@ LDFLAGS = $(FAST_LDFLAGS)
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
+
+ WATCHERS = dicuccio
++
++DLL_LIB = taxon1 xalnmgr xregexp align_format seqset xobjmgr xobjutil
+diff --git a/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib b/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
+index 5562f82..68d3a87 100644
+--- a/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
++++ b/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
+@@ -24,3 +24,6 @@ SRC = RowSelector \
+ RefinerTrial \
+ RefinerEngine \
+ Interface
++
++DLL_LIB = blastinput cdd ncbi_xcache_bdb xcd_utils xncbi xser xutil
++
+diff --git a/src/algo/structure/cd_utils/Makefile.xcd_utils.lib b/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
+index eda71f8..8d3a96a 100644
+--- a/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
++++ b/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
+@@ -68,6 +68,6 @@ SRC = \
+ cuTaxTree \
+ cuUtils
+
+-DLL_LIB = xobjread
++DLL_LIB = xobjread blastdb blast_services cdd entrez2cli id1cli mmdb ncbimime scoremat taxon1 xblast xobjmgr xregexp
+
+ CPPFLAGS = $(ORIG_CPPFLAGS)
+diff --git a/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib b/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
+index 676a8dd..3d3e4c9 100644
+--- a/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
++++ b/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
+@@ -9,3 +9,5 @@ WATCHERS = thiessen
+ SRC = block_align
+
+ LIB = xstruct_dp
++
++DLL_LIB = xncbi
+diff --git a/src/algo/structure/struct_util/Makefile.xstruct_util.lib b/src/algo/structure/struct_util/Makefile.xstruct_util.lib
+index 5a38c7d..35d7077 100644
+--- a/src/algo/structure/struct_util/Makefile.xstruct_util.lib
++++ b/src/algo/structure/struct_util/Makefile.xstruct_util.lib
+@@ -17,3 +17,5 @@ SRC = aaa_dummy_pch \
+ su_block_multiple_alignment \
+ su_pssm \
+ su_sequence_set
++
++DLL_LIB = seqset seq xncbi scoremat xstruct_dp xblast
+diff --git a/src/algo/structure/threader/Makefile.xstruct_thread.lib b/src/algo/structure/threader/Makefile.xstruct_thread.lib
+index c06a2c0..9f1ff25 100644
+--- a/src/algo/structure/threader/Makefile.xstruct_thread.lib
++++ b/src/algo/structure/threader/Makefile.xstruct_thread.lib
+@@ -10,3 +10,5 @@ SRC = thrdalgs thrdatd thrdbwfi thrdcpal thrdcpll thrdcprl \
+ thrdttbi thrdzsc
+
+ LIB = xstruct_thread
++
++DLL_LIB = xutil
+diff --git a/src/algo/text/Makefile.xalgotext.lib b/src/algo/text/Makefile.xalgotext.lib
+index 81ba0e6..f25073e 100644
+--- a/src/algo/text/Makefile.xalgotext.lib
++++ b/src/algo/text/Makefile.xalgotext.lib
+@@ -10,3 +10,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
+ ASN_DEP = general
++
++DLL_LIB = align_format blastinput ncbi_xcache_bdb xcompress xncbi xutil # axf
+diff --git a/src/algo/volume_merge/Makefile.xalgovmerge.lib b/src/algo/volume_merge/Makefile.xalgovmerge.lib
+index 499861a..3ffb80b 100644
+--- a/src/algo/volume_merge/Makefile.xalgovmerge.lib
++++ b/src/algo/volume_merge/Makefile.xalgovmerge.lib
+@@ -10,3 +10,5 @@ SRC = volume_merge
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++
++DLL_LIB = xncbi
+diff --git a/src/algo/winmask/Makefile.xalgowinmask.lib b/src/algo/winmask/Makefile.xalgowinmask.lib
+index afaf676..ad2c1fe 100644
+--- a/src/algo/winmask/Makefile.xalgowinmask.lib
++++ b/src/algo/winmask/Makefile.xalgowinmask.lib
+@@ -21,3 +21,5 @@ SRC = seq_masker seq_masker_score_mean seq_masker_score_mean_glob \
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++DLL_LIB = seqmasks_io xobjread xobjutil
++
+diff --git a/src/cgi/Makefile.cgi.lib b/src/cgi/Makefile.cgi.lib
+index a990390..edf40aa 100644
+--- a/src/cgi/Makefile.cgi.lib
++++ b/src/cgi/Makefile.cgi.lib
+@@ -11,3 +11,5 @@ LIB = xcgi
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
+
+ WATCHERS = vakatov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/cgi/Makefile.fcgi.lib b/src/cgi/Makefile.fcgi.lib
+index 2569b41..6b85780 100644
+--- a/src/cgi/Makefile.fcgi.lib
++++ b/src/cgi/Makefile.fcgi.lib
+@@ -12,3 +12,5 @@ LIB = xfcgi
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE) -DNCBI_XFCGI_EXPORTS
+
+ WATCHERS = vakatov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/connect/Makefile.connssl.lib b/src/connect/Makefile.connssl.lib
+index b400ca2..8756320 100644
+--- a/src/connect/Makefile.connssl.lib
++++ b/src/connect/Makefile.connssl.lib
+@@ -8,3 +8,5 @@ CPPFLAGS = $(GNUTLS_INCLUDE) $(ORIG_CPPFLAGS)
+ LIBS = $(GNUTLS_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = lavr
++
++DLL_LIB = connect
+diff --git a/src/connect/Makefile.xconnect.lib b/src/connect/Makefile.xconnect.lib
+index 473bb0b..88dae10 100644
+--- a/src/connect/Makefile.xconnect.lib
++++ b/src/connect/Makefile.xconnect.lib
+@@ -11,9 +11,13 @@ include $(srcdir)/Makefile.xxconnect.lib
+ SRC = $(SRC_C) $(SRC_CXX)
+ UNIX_SRC = $(LOCAL_LBSM)
+
++DLL_LIB = xncbi
++
+ LIB = xconnect
+ PROJ_TAG = core
+
+ LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi xutil
+diff --git a/src/connect/Makefile.xthrserv.lib b/src/connect/Makefile.xthrserv.lib
+index 1e5b857..0833a78 100644
+--- a/src/connect/Makefile.xthrserv.lib
++++ b/src/connect/Makefile.xthrserv.lib
+@@ -4,6 +4,6 @@ SRC = threaded_server server server_monitor connection_pool
+ LIB = xthrserv
+ PROJ_TAG = core
+ LIBS = $(NETWORK_LIBS)
+-DLL_LIB = xutil xconnect
++DLL_LIB = xncbi xutil xconnect
+
+ WATCHERS = ivanovp
+diff --git a/src/connect/Makefile.xxconnect.lib b/src/connect/Makefile.xxconnect.lib
+index d7ba751..8e27819 100644
+--- a/src/connect/Makefile.xxconnect.lib
++++ b/src/connect/Makefile.xxconnect.lib
+@@ -16,3 +16,5 @@ PROJ_TAG = core
+ LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi xutil connect
+diff --git a/src/connect/services/Makefile.ncbi_xcache_netcache.lib b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
+index 606f4f1..e6cfdac 100644
+--- a/src/connect/services/Makefile.ncbi_xcache_netcache.lib
++++ b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
+@@ -6,7 +6,7 @@ SRC = neticache_client
+ LIB = ncbi_xcache_netcache
+
+ LIB_OR_DLL = both
+-DLL_LIB = xconnserv xconnect xutil
++DLL_LIB = xconnserv xconnect xutil xncbi
+
+ CPPFLAGS = $(ORIG_CPPFLAGS)
+ LIBS = $(ORIG_LIBS)
+diff --git a/src/connect/services/Makefile.xconnserv.lib b/src/connect/services/Makefile.xconnserv.lib
+index 4b8f21f..04fcbf8 100644
+--- a/src/connect/services/Makefile.xconnserv.lib
++++ b/src/connect/services/Makefile.xconnserv.lib
+@@ -15,6 +15,6 @@ LIB = xconnserv
+ PROJ_TAG = core
+ LIBS = $(NETWORK_LIBS)
+
+-DLL_LIB = xthrserv xconnect xutil
++DLL_LIB = xthrserv xconnect xutil xncbi
+
+ WATCHERS = kazimird
+diff --git a/src/connect/test/Makefile.conntest.lib b/src/connect/test/Makefile.conntest.lib
+index 58a2fa5..3d9876c 100644
+--- a/src/connect/test/Makefile.conntest.lib
++++ b/src/connect/test/Makefile.conntest.lib
+@@ -4,3 +4,5 @@ SRC = ncbi_conntest
+ LIB = xconntest
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi xutil connect
+diff --git a/src/corelib/Makefile.test_boost.lib b/src/corelib/Makefile.test_boost.lib
+index e8fa174..f90441d 100644
+--- a/src/corelib/Makefile.test_boost.lib
++++ b/src/corelib/Makefile.test_boost.lib
+@@ -9,3 +9,5 @@ REQUIRES = Boost.Test.Included
+
+ WATCHERS = ivanovp
+ PROJ_TAG = test
++
++DLL_LIB = xncbi
+diff --git a/src/corelib/Makefile.test_mt.lib b/src/corelib/Makefile.test_mt.lib
+index 6153eab..f64c3a2 100644
+--- a/src/corelib/Makefile.test_mt.lib
++++ b/src/corelib/Makefile.test_mt.lib
+@@ -8,3 +8,5 @@ LIB = test_mt
+ USE_PCH = no
+ WATCHERS = grichenk
+ PROJ_TAG = test
++
++DLL_LIB = xncbi
+diff --git a/src/corelib/test/Makefile.pbacktest.lib b/src/corelib/test/Makefile.pbacktest.lib
+index da0c616..c4c62ab 100644
+--- a/src/corelib/test/Makefile.pbacktest.lib
++++ b/src/corelib/test/Makefile.pbacktest.lib
+@@ -4,3 +4,5 @@ SRC = pbacktest
+ LIB = xpbacktest
+
+ WATCHERS = lavr
++
++DLL_LIB = xncbi
+diff --git a/src/db/bdb/Makefile.bdb.lib b/src/db/bdb/Makefile.bdb.lib
+index 3729707..cd2827c 100644
+--- a/src/db/bdb/Makefile.bdb.lib
++++ b/src/db/bdb/Makefile.bdb.lib
+@@ -14,3 +14,7 @@ LIB = bdb
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
+
+ WATCHERS = kuznets
++
++DLL_LIB = xncbi xutil
++LIBS = $(BERKELEYDB_LIBS)
++
+diff --git a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
+index 7e97a26..8f54efc 100644
+--- a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
++++ b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
+@@ -8,7 +8,7 @@ SRC = bdb_blobcache
+ LIB = ncbi_xcache_bdb
+
+ LIB_OR_DLL = both
+-DLL_LIB = bdb xutil
++DLL_LIB = bdb xutil xncbi
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
+ LIBS = $(BERKELEYDB_LIBS) $(ORIG_LIBS)
+diff --git a/src/db/sqlite/Makefile.sqlitewrapp.lib b/src/db/sqlite/Makefile.sqlitewrapp.lib
+index cecfd16..c01668b 100644
+--- a/src/db/sqlite/Makefile.sqlitewrapp.lib
++++ b/src/db/sqlite/Makefile.sqlitewrapp.lib
+@@ -8,3 +8,6 @@ CPPFLAGS= $(ORIG_CPPFLAGS) $(SQLITE3_INCLUDE)
+ REQUIRES = SQLITE3
+
+ WATCHERS = ivanovp
++
++DLL_LIB = xncbi xutil
++LIBS = $(SQLITE3_LIBS)
+diff --git a/src/dbapi/Makefile.dbapi.lib b/src/dbapi/Makefile.dbapi.lib
+index 6e3ad4c..e3d6a49 100644
+--- a/src/dbapi/Makefile.dbapi.lib
++++ b/src/dbapi/Makefile.dbapi.lib
+@@ -10,3 +10,8 @@ LIB = dbapi
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
+
+ WATCHERS = ivanovp
++
++#ASN_DEP = driver dbapi_driver
++
++DLL_LIB = xncbi xutil # dbapi_driver$(DLL)
++LIBS = $(PYTHON_LIBS)
+diff --git a/src/dbapi/driver/Makefile.dbapi_driver.lib b/src/dbapi/driver/Makefile.dbapi_driver.lib
+index dfeac5a..bc113ed 100644
+--- a/src/dbapi/driver/Makefile.dbapi_driver.lib
++++ b/src/dbapi/driver/Makefile.dbapi_driver.lib
+@@ -22,3 +22,5 @@ CXXFLAGS_darwin = -fno-inline
+ CXXFLAGS = $(ORIG_CXXFLAGS) $(CXXFLAGS_$(OSTYPE))
+
+ WATCHERS = ivanovp
++
++DLL_LIB = xncbi xutil
+diff --git a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
+index 941ccd6..f1f872c 100644
+--- a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
++++ b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
+@@ -6,3 +6,5 @@ LIB = dbapi_sample_base
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
+
+ WATCHERS = ivanovp
++
++DLL_LIB = xncbi xutil dbapi_driver
+diff --git a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
+index ebe08c4..86ecda6 100644
+--- a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
++++ b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
+@@ -11,7 +11,7 @@ LIB_OR_DLL = dll
+
+ # Dependencies for shared library
+ DLL_LIB = dbapi dbapi_driver$(DLL) $(XCONNEXT) xconnect xutil xncbi
+-LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS)
++LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS) $(PYTHON_LIBS)
+ # Drop other flags to build with full dependencies under ICC.
+ DLL_LDFLAGS = $(DLL_UNDEF_FLAGS)
+
+diff --git a/src/dbapi/simple/Makefile.sdbapi.lib b/src/dbapi/simple/Makefile.sdbapi.lib
+index 603fd1e..0d06323 100644
+--- a/src/dbapi/simple/Makefile.sdbapi.lib
++++ b/src/dbapi/simple/Makefile.sdbapi.lib
+@@ -5,3 +5,4 @@ LIB = sdbapi
+
+ WATCHERS = ivanovp
+
++DLL_LIB = xncbi xutil dbapi_driver ncbi_xdbapi_ftds xconnect xser bdb xconnserv
+diff --git a/src/html/Makefile.html.lib b/src/html/Makefile.html.lib
+index a57c1e3..0005299 100644
+--- a/src/html/Makefile.html.lib
++++ b/src/html/Makefile.html.lib
+@@ -8,3 +8,5 @@ SRC = node html htmlhelper page pager selection components \
+ LIB = xhtml
+
+ WATCHERS = ivanov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/misc/cgi_redirect/Makefile.cgi_redirect.lib b/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
+index 6d7a4af..332e5d0 100644
+--- a/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
++++ b/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
+@@ -7,3 +7,5 @@ SRC = redirect
+ LIB = xcgi_redirect
+
+ WATCHERS = ivanov
++
++DLL_LIB = axf dbapi_driver xcgi xhtml xncbi
+diff --git a/src/misc/grid_cgi/Makefile.xgridcgi.lib b/src/misc/grid_cgi/Makefile.xgridcgi.lib
+index c9ef138..8e25cbe 100644
+--- a/src/misc/grid_cgi/Makefile.xgridcgi.lib
++++ b/src/misc/grid_cgi/Makefile.xgridcgi.lib
+@@ -9,3 +9,5 @@ LIB = xgridcgi
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
+
+ WATCHERS = vakatov
++
++DLL_LIB = xncbi xcgi xconnserv xhtml
+diff --git a/src/objects/access/Makefile.access.lib b/src/objects/access/Makefile.access.lib
+index 11421d9..e7900a1 100644
+--- a/src/objects/access/Makefile.access.lib
++++ b/src/objects/access/Makefile.access.lib
+@@ -1,2 +1,3 @@
+ LIB = access
+ SRC = access__ access___
++DLL_LIB = xncbi xser
+diff --git a/src/objects/biblio/Makefile.biblio.lib b/src/objects/biblio/Makefile.biblio.lib
+index 2c7d491..cb54ba6 100644
+--- a/src/objects/biblio/Makefile.biblio.lib
++++ b/src/objects/biblio/Makefile.biblio.lib
+@@ -1,2 +1,4 @@
+ LIB = biblio
+ SRC = biblio__ biblio___ citation_base
++
++DLL_LIB = general xser xncbi xutil
+diff --git a/src/objects/biotree/Makefile.biotree.lib b/src/objects/biotree/Makefile.biotree.lib
+index 8019285..2c689ae 100644
+--- a/src/objects/biotree/Makefile.biotree.lib
++++ b/src/objects/biotree/Makefile.biotree.lib
+@@ -1,3 +1,5 @@
+ ASN_DEP = seq seqset
+ LIB = biotree
+ SRC = biotree__ biotree___
++
++DLL_LIB = xncbi xser
+diff --git a/src/objects/blast/Makefile.blast.lib b/src/objects/blast/Makefile.blast.lib
+index 0dd0fa3..d50f29f 100644
+--- a/src/objects/blast/Makefile.blast.lib
++++ b/src/objects/blast/Makefile.blast.lib
+@@ -2,3 +2,5 @@ LIB = xnetblast
+ SRC = blast__ blast___ names
+
+ WATCHERS = camacho
++
++DLL_LIB = xncbi xutil xser seq seqset scoremat
+diff --git a/src/objects/blast/Makefile.xnetblastcli.lib b/src/objects/blast/Makefile.xnetblastcli.lib
+index 96325c4..5a72805 100644
+--- a/src/objects/blast/Makefile.xnetblastcli.lib
++++ b/src/objects/blast/Makefile.xnetblastcli.lib
+@@ -2,3 +2,5 @@ ASN_DEP = xnetblast
+
+ LIB = xnetblastcli
+ SRC = blastclient blastclient_
++
++DLL_LIB = xncbi xutil seqset connect xconnect xnetblast
+diff --git a/src/objects/blastdb/Makefile.blastdb.lib b/src/objects/blastdb/Makefile.blastdb.lib
+index be2c0d1..2884db2 100644
+--- a/src/objects/blastdb/Makefile.blastdb.lib
++++ b/src/objects/blastdb/Makefile.blastdb.lib
+@@ -1,2 +1,4 @@
+ LIB = blastdb
+ SRC = blastdb__ blastdb___
++
++DLL_LIB = xncbi xser seq
+diff --git a/src/objects/blastxml/Makefile.blastxml.lib b/src/objects/blastxml/Makefile.blastxml.lib
+index d18eb78..f90501d 100644
+--- a/src/objects/blastxml/Makefile.blastxml.lib
++++ b/src/objects/blastxml/Makefile.blastxml.lib
+@@ -1,2 +1,4 @@
+ LIB = blastxml
+ SRC = blastxml__ blastxml___
++
++DLL_LIB = xser
+diff --git a/src/objects/cdd/Makefile.cdd.lib b/src/objects/cdd/Makefile.cdd.lib
+index 978cae9..24b726c 100644
+--- a/src/objects/cdd/Makefile.cdd.lib
++++ b/src/objects/cdd/Makefile.cdd.lib
+@@ -1,2 +1,4 @@
+ LIB = cdd
+ SRC = cdd__ cdd___
++
++DLL_LIB = mmdb xser scoremat cn3d
+diff --git a/src/objects/cn3d/Makefile.cn3d.lib b/src/objects/cn3d/Makefile.cn3d.lib
+index 1af5d1d..ecd31b2 100644
+--- a/src/objects/cn3d/Makefile.cn3d.lib
++++ b/src/objects/cn3d/Makefile.cn3d.lib
+@@ -1,3 +1,5 @@
+ ASN_DEP = mmdb
+ LIB = cn3d
+ SRC = cn3d__ cn3d___
++
++DLL_LIB = mmdb xser
+diff --git a/src/objects/docsum/Makefile.docsum.lib b/src/objects/docsum/Makefile.docsum.lib
+index 0e68886..0bc8a1c 100644
+--- a/src/objects/docsum/Makefile.docsum.lib
++++ b/src/objects/docsum/Makefile.docsum.lib
+@@ -1,2 +1,4 @@
+ LIB = docsum
+ SRC = docsum__ docsum___
++
++DLL_LIB = xser
+diff --git a/src/objects/entrez2/Makefile.entrez2.lib b/src/objects/entrez2/Makefile.entrez2.lib
+index 4507f72..4c47ad3 100644
+--- a/src/objects/entrez2/Makefile.entrez2.lib
++++ b/src/objects/entrez2/Makefile.entrez2.lib
+@@ -2,3 +2,5 @@ WATCHERS = lavr
+
+ LIB = entrez2
+ SRC = entrez2__ entrez2___
++
++DLL_LIB = xser
+diff --git a/src/objects/entrez2/Makefile.entrez2cli.lib b/src/objects/entrez2/Makefile.entrez2cli.lib
+index 42a4649..2fdcc6f 100644
+--- a/src/objects/entrez2/Makefile.entrez2cli.lib
++++ b/src/objects/entrez2/Makefile.entrez2cli.lib
+@@ -4,3 +4,5 @@ ASN_DEP = entrez2
+
+ LIB = entrez2cli
+ SRC = entrez2_client entrez2_client_
++
++DLL_LIB = xncbi xconnect entrez2
+diff --git a/src/objects/entrezgene/Makefile.entrezgene.lib b/src/objects/entrezgene/Makefile.entrezgene.lib
+index a1bd4f4..27319c3 100644
+--- a/src/objects/entrezgene/Makefile.entrezgene.lib
++++ b/src/objects/entrezgene/Makefile.entrezgene.lib
+@@ -1,2 +1,4 @@
+ LIB = entrezgene
+ SRC = entrezgene__ entrezgene___
++
++DLL_LIB = xser seq
+diff --git a/src/objects/featdef/Makefile.featdef.lib b/src/objects/featdef/Makefile.featdef.lib
+index 51c7c8d..e603711 100644
+--- a/src/objects/featdef/Makefile.featdef.lib
++++ b/src/objects/featdef/Makefile.featdef.lib
+@@ -1,2 +1,4 @@
+ LIB = featdef
+ SRC = featdef__ featdef___
++
++DLL_LIB = xser
+diff --git a/src/objects/gbseq/Makefile.gbseq.lib b/src/objects/gbseq/Makefile.gbseq.lib
+index 9dabdeb..4b27881 100644
+--- a/src/objects/gbseq/Makefile.gbseq.lib
++++ b/src/objects/gbseq/Makefile.gbseq.lib
+@@ -1,2 +1,4 @@
+ LIB = gbseq
+ SRC = gbseq__ gbseq___
++
++DLL_LIB = xser
+diff --git a/src/objects/general/Makefile.general.lib b/src/objects/general/Makefile.general.lib
+index 951304f..3be083d 100644
+--- a/src/objects/general/Makefile.general.lib
++++ b/src/objects/general/Makefile.general.lib
+@@ -1,2 +1,4 @@
+ LIB = general
+ SRC = general__ general___ uoconv
++
++DLL_LIB = xser xncbi xutil
+diff --git a/src/objects/genomecoll/Makefile.genome_collection.lib b/src/objects/genomecoll/Makefile.genome_collection.lib
+index f039af6..f6b41a7 100644
+--- a/src/objects/genomecoll/Makefile.genome_collection.lib
++++ b/src/objects/genomecoll/Makefile.genome_collection.lib
+@@ -4,3 +4,5 @@ LIB = genome_collection
+ SRC = genome_collection__ genome_collection___
+
+ WATCHERS = dicuccio
++
++DLL_LIB = xser seq
+diff --git a/src/objects/homologene/Makefile.homologene.lib b/src/objects/homologene/Makefile.homologene.lib
+index 15d13ad..d44b2e3 100644
+--- a/src/objects/homologene/Makefile.homologene.lib
++++ b/src/objects/homologene/Makefile.homologene.lib
+@@ -4,3 +4,5 @@
+
+ LIB = homologene
+ SRC = homologene__ homologene___
++
++DLL_LIB = xser seq
+diff --git a/src/objects/id1/Makefile.id1.lib b/src/objects/id1/Makefile.id1.lib
+index d60c728..bf98427 100644
+--- a/src/objects/id1/Makefile.id1.lib
++++ b/src/objects/id1/Makefile.id1.lib
+@@ -4,3 +4,5 @@ LIB = id1
+ SRC = id1__ id1___
+
+ WATCHERS = vasilche
++
++DLL_LIB = xser seqset
+diff --git a/src/objects/id1/Makefile.id1cli.lib b/src/objects/id1/Makefile.id1cli.lib
+index e87ea83..745c5cb 100644
+--- a/src/objects/id1/Makefile.id1cli.lib
++++ b/src/objects/id1/Makefile.id1cli.lib
+@@ -4,3 +4,5 @@ LIB = id1cli
+ SRC = id1_client id1_client_
+
+ WATCHERS = vasilche
++
++DLL_LIB = id1 xconnect
+diff --git a/src/objects/id2/Makefile.id2.lib b/src/objects/id2/Makefile.id2.lib
+index 09d8b36..1e74a58 100644
+--- a/src/objects/id2/Makefile.id2.lib
++++ b/src/objects/id2/Makefile.id2.lib
+@@ -2,3 +2,5 @@ LIB = id2
+ SRC = id2__ id2___
+
+ WATCHERS = vasilche
++
++DLL_LIB = xser seq seqsplit
+diff --git a/src/objects/id2/Makefile.id2cli.lib b/src/objects/id2/Makefile.id2cli.lib
+index 5d41f23..ccec62a 100644
+--- a/src/objects/id2/Makefile.id2cli.lib
++++ b/src/objects/id2/Makefile.id2cli.lib
+@@ -4,3 +4,5 @@ LIB = id2cli
+ SRC = id2_client id2_client_
+
+ WATCHERS = vasilche
++
++DLL_LIB = id2 xconnect
+diff --git a/src/objects/insdseq/Makefile.insdseq.lib b/src/objects/insdseq/Makefile.insdseq.lib
+index fa729b7..5754057 100644
+--- a/src/objects/insdseq/Makefile.insdseq.lib
++++ b/src/objects/insdseq/Makefile.insdseq.lib
+@@ -1,2 +1,4 @@
+ LIB = insdseq
+ SRC = insdseq__ insdseq___
++
++DLL_LIB = xser
+diff --git a/src/objects/macro/Makefile.macro.lib b/src/objects/macro/Makefile.macro.lib
+index 3a0a7c0..25a3b73 100644
+--- a/src/objects/macro/Makefile.macro.lib
++++ b/src/objects/macro/Makefile.macro.lib
+@@ -2,3 +2,5 @@
+
+ LIB = macro
+ SRC = macro__ macro___
++
++DLL_LIB = xser
+diff --git a/src/objects/medlars/Makefile.medlars.lib b/src/objects/medlars/Makefile.medlars.lib
+index 3a6d0cd..5c8e00e 100644
+--- a/src/objects/medlars/Makefile.medlars.lib
++++ b/src/objects/medlars/Makefile.medlars.lib
+@@ -1,2 +1,4 @@
+ LIB = medlars
+ SRC = medlars__ medlars___
++
++DLL_LIB = xser biblio
+diff --git a/src/objects/medline/Makefile.medline.lib b/src/objects/medline/Makefile.medline.lib
+index ea28066..eb42aa4 100644
+--- a/src/objects/medline/Makefile.medline.lib
++++ b/src/objects/medline/Makefile.medline.lib
+@@ -1,2 +1,4 @@
+ LIB = medline
+ SRC = medline__ medline___
++
++DLL_LIB = general biblio
+diff --git a/src/objects/mim/Makefile.mim.lib b/src/objects/mim/Makefile.mim.lib
+index c2cd50e..2fed8f4 100644
+--- a/src/objects/mim/Makefile.mim.lib
++++ b/src/objects/mim/Makefile.mim.lib
+@@ -1,2 +1,4 @@
+ LIB = mim
+ SRC = mim__ mim___
++
++DLL_LIB = xser
+diff --git a/src/objects/mla/Makefile.mla.lib b/src/objects/mla/Makefile.mla.lib
+index a748f68..5b5523a 100644
+--- a/src/objects/mla/Makefile.mla.lib
++++ b/src/objects/mla/Makefile.mla.lib
+@@ -1,2 +1,4 @@
+ LIB = mla
+ SRC = mla__ mla___
++
++DLL_LIB = xser medline pubmed pub medlars
+diff --git a/src/objects/mla/Makefile.mlacli.lib b/src/objects/mla/Makefile.mlacli.lib
+index 48af427..4cee3ac 100644
+--- a/src/objects/mla/Makefile.mlacli.lib
++++ b/src/objects/mla/Makefile.mlacli.lib
+@@ -2,3 +2,5 @@ ASN_DEP = mla
+
+ LIB = mlacli
+ SRC = mla_client mla_client_
++
++DLL_LIB = xncbi xconnect mla
+diff --git a/src/objects/mmdb/Makefile.mmdb.lib b/src/objects/mmdb/Makefile.mmdb.lib
+index 6fc8e25..5c6c100 100644
+--- a/src/objects/mmdb/Makefile.mmdb.lib
++++ b/src/objects/mmdb/Makefile.mmdb.lib
+@@ -8,3 +8,5 @@ CPPFLAGS = -I$(srcdir) -I$(top_srcdir)/src/objects/mmdb $(ORIG_CPPFLAGS)
+
+ LIB = mmdb
+ SRC = $(ASN:%=%__) $(ASN:%=%___)
++
++DLL_LIB = xser pub seq
+diff --git a/src/objects/ncbimime/Makefile.ncbimime.lib b/src/objects/ncbimime/Makefile.ncbimime.lib
+index 93cafdf..1360ade 100644
+--- a/src/objects/ncbimime/Makefile.ncbimime.lib
++++ b/src/objects/ncbimime/Makefile.ncbimime.lib
+@@ -1,2 +1,4 @@
+ LIB = ncbimime
+ SRC = ncbimime__ ncbimime___
++
++DLL_LIB = mmdb cn3d seqset cdd
+diff --git a/src/objects/objprt/Makefile.objprt.lib b/src/objects/objprt/Makefile.objprt.lib
+index 40d6b09..c00e6d2 100644
+--- a/src/objects/objprt/Makefile.objprt.lib
++++ b/src/objects/objprt/Makefile.objprt.lib
+@@ -1,2 +1,4 @@
+ LIB = objprt
+ SRC = objprt__ objprt___
++
++DLL_LIB = xser
+diff --git a/src/objects/omssa/Makefile.omssa.lib b/src/objects/omssa/Makefile.omssa.lib
+index b79617f..e1d4a9e 100644
+--- a/src/objects/omssa/Makefile.omssa.lib
++++ b/src/objects/omssa/Makefile.omssa.lib
+@@ -2,3 +2,5 @@ APP_DEP = seq
+
+ LIB = omssa
+ SRC = omssa__ omssa___
++
++DLL_LIB = seq
+diff --git a/src/objects/pcassay/Makefile.pcassay.lib b/src/objects/pcassay/Makefile.pcassay.lib
+index 1086865..587adb5 100644
+--- a/src/objects/pcassay/Makefile.pcassay.lib
++++ b/src/objects/pcassay/Makefile.pcassay.lib
+@@ -1,2 +1,4 @@
+ LIB = pcassay
+ SRC = pcassay__ pcassay___
++
++DLL_LIB = xser pcsubstance seq
+diff --git a/src/objects/pcsubstance/Makefile.pcsubstance.lib b/src/objects/pcsubstance/Makefile.pcsubstance.lib
+index b36802e..c3f6a39 100644
+--- a/src/objects/pcsubstance/Makefile.pcsubstance.lib
++++ b/src/objects/pcsubstance/Makefile.pcsubstance.lib
+@@ -1,2 +1,4 @@
+ LIB = pcsubstance
+ SRC = pcsubstance__ pcsubstance___
++
++DLL_LIB = xser general pub
+diff --git a/src/objects/proj/Makefile.proj.lib b/src/objects/proj/Makefile.proj.lib
+index c5bb3d3..fbde99a 100644
+--- a/src/objects/proj/Makefile.proj.lib
++++ b/src/objects/proj/Makefile.proj.lib
+@@ -1,2 +1,4 @@
+ LIB = proj
+ SRC = proj__ proj___
++
++DLL_LIB = xser pubmed seqset
+diff --git a/src/objects/pub/Makefile.pub.lib b/src/objects/pub/Makefile.pub.lib
+index 78c12e1..9baa08d 100644
+--- a/src/objects/pub/Makefile.pub.lib
++++ b/src/objects/pub/Makefile.pub.lib
+@@ -1,2 +1,4 @@
+ LIB = pub
+ SRC = pub__ pub___
++
++DLL_LIB = medline biblio
+diff --git a/src/objects/pubmed/Makefile.pubmed.lib b/src/objects/pubmed/Makefile.pubmed.lib
+index 8b8d553..46e3125 100644
+--- a/src/objects/pubmed/Makefile.pubmed.lib
++++ b/src/objects/pubmed/Makefile.pubmed.lib
+@@ -1,2 +1,4 @@
+ LIB = pubmed
+ SRC = pubmed__ pubmed___
++
++DLL_LIB = xser medline
+diff --git a/src/objects/remap/Makefile.remap.lib b/src/objects/remap/Makefile.remap.lib
+index 9a35d90..1256648 100644
+--- a/src/objects/remap/Makefile.remap.lib
++++ b/src/objects/remap/Makefile.remap.lib
+@@ -1,2 +1,4 @@
+ LIB = remap
+ SRC = remap__ remap___
++
++DLL_LIB = xser seq
+diff --git a/src/objects/remap/Makefile.remapcli.lib b/src/objects/remap/Makefile.remapcli.lib
+index e45f34f..2751bf9 100644
+--- a/src/objects/remap/Makefile.remapcli.lib
++++ b/src/objects/remap/Makefile.remapcli.lib
+@@ -4,3 +4,5 @@ ASN_DEP = remap
+
+ LIB = remapcli
+ SRC = remap_client remap_client_
++
++DLL_LIB = xncbi xconnect remap
+diff --git a/src/objects/scoremat/Makefile.scoremat.lib b/src/objects/scoremat/Makefile.scoremat.lib
+index 62e01f5..93bb071 100644
+--- a/src/objects/scoremat/Makefile.scoremat.lib
++++ b/src/objects/scoremat/Makefile.scoremat.lib
+@@ -1,2 +1,4 @@
+ LIB = scoremat
+ SRC = scoremat__ scoremat___
++
++DLL_LIB = seqset seq
+diff --git a/src/objects/seq/Makefile.seq.lib b/src/objects/seq/Makefile.seq.lib
+index 1b5edc5..30ef316 100644
+--- a/src/objects/seq/Makefile.seq.lib
++++ b/src/objects/seq/Makefile.seq.lib
+@@ -13,3 +13,5 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \
+ seq_loc_from_string seq_loc_reverse_complementer
+
+ WATCHERS = vasilche grichenk
++
++DLL_LIB = general seqcode pub sequtil biblio xser xncbi xutil
+diff --git a/src/objects/seqcode/Makefile.seqcode.lib b/src/objects/seqcode/Makefile.seqcode.lib
+index dc9d60e..dabd95b 100644
+--- a/src/objects/seqcode/Makefile.seqcode.lib
++++ b/src/objects/seqcode/Makefile.seqcode.lib
+@@ -1,2 +1,4 @@
+ LIB = seqcode
+ SRC = seqcode__ seqcode___
++
++DLL_LIB = xncbi xser
+diff --git a/src/objects/seqedit/Makefile.seqedit.lib b/src/objects/seqedit/Makefile.seqedit.lib
+index 283a9b7..520b0bb 100644
+--- a/src/objects/seqedit/Makefile.seqedit.lib
++++ b/src/objects/seqedit/Makefile.seqedit.lib
+@@ -1,3 +1,4 @@
+ LIB = seqedit
+ SRC = seqedit__ seqedit___
+
++DLL_LIB = xser seq seqset
+diff --git a/src/objects/seqset/Makefile.seqset.lib b/src/objects/seqset/Makefile.seqset.lib
+index 87f16d0..febce67 100644
+--- a/src/objects/seqset/Makefile.seqset.lib
++++ b/src/objects/seqset/Makefile.seqset.lib
+@@ -1,2 +1,3 @@
+ LIB = seqset
+ SRC = seqset__ seqset___ gb_release_file
++DLL_LIB = xser seq
+diff --git a/src/objects/seqsplit/Makefile.seqsplit.lib b/src/objects/seqsplit/Makefile.seqsplit.lib
+index 87ae869..1743321 100644
+--- a/src/objects/seqsplit/Makefile.seqsplit.lib
++++ b/src/objects/seqsplit/Makefile.seqsplit.lib
+@@ -2,3 +2,5 @@ LIB = seqsplit
+ SRC = seqsplit__ seqsplit___
+
+ WATCHERS = vasilche
++
++DLL_LIB = xser seq seqset
+diff --git a/src/objects/seqtest/Makefile.seqtest.lib b/src/objects/seqtest/Makefile.seqtest.lib
+index 609a12c..e3d1e4b 100644
+--- a/src/objects/seqtest/Makefile.seqtest.lib
++++ b/src/objects/seqtest/Makefile.seqtest.lib
+@@ -4,3 +4,5 @@ ASN = seqtest
+
+ LIB = seqtest
+ SRC = $(ASN:%=%__) $(ASN:%=%___)
++
++DLL_LIB = xser seq
+diff --git a/src/objects/submit/Makefile.submit.lib b/src/objects/submit/Makefile.submit.lib
+index 74798f8..c74707c 100644
+--- a/src/objects/submit/Makefile.submit.lib
++++ b/src/objects/submit/Makefile.submit.lib
+@@ -1,2 +1,3 @@
+ LIB = submit
+ SRC = submit__ submit___
++DLL_LIB = xser xncbi seq biblio seqset
+diff --git a/src/objects/taxon1/Makefile.taxon1.lib b/src/objects/taxon1/Makefile.taxon1.lib
+index 61658ab..f46db75 100644
+--- a/src/objects/taxon1/Makefile.taxon1.lib
++++ b/src/objects/taxon1/Makefile.taxon1.lib
+@@ -3,3 +3,5 @@ LIB = taxon1
+ SRC = taxon1__ taxon1___ taxon1 cache utils ctreecont
+
+ WATCHERS = domrach
++
++DLL_LIB = xser seq xconnect
+diff --git a/src/objects/taxon3/Makefile.taxon3.lib b/src/objects/taxon3/Makefile.taxon3.lib
+index 7e4c93d..00be2c0 100644
+--- a/src/objects/taxon3/Makefile.taxon3.lib
++++ b/src/objects/taxon3/Makefile.taxon3.lib
+@@ -4,3 +4,5 @@ LIB = taxon3
+ SRC = taxon3__ taxon3___ taxon3
+
+ WATCHERS = bollin
++
++DLL_LIB = connect xser xconnect seq
+diff --git a/src/objects/tinyseq/Makefile.tinyseq.lib b/src/objects/tinyseq/Makefile.tinyseq.lib
+index 1c7ccf3..e1954cc 100644
+--- a/src/objects/tinyseq/Makefile.tinyseq.lib
++++ b/src/objects/tinyseq/Makefile.tinyseq.lib
+@@ -1,2 +1,4 @@
+ LIB = tinyseq
+ SRC = tinyseq__ tinyseq___
++
++DLL_LIB = xser
+diff --git a/src/objects/valerr/Makefile.valerr.lib b/src/objects/valerr/Makefile.valerr.lib
+index b202355..9699bb2 100644
+--- a/src/objects/valerr/Makefile.valerr.lib
++++ b/src/objects/valerr/Makefile.valerr.lib
+@@ -2,3 +2,5 @@ LIB = valerr
+ SRC = valerr__ valerr___
+
+ ASN_DEP = seqset
++
++DLL_LIB = xser
+diff --git a/src/objects/valid/Makefile.valid.lib b/src/objects/valid/Makefile.valid.lib
+index 86a00a0..64226d6 100644
+--- a/src/objects/valid/Makefile.valid.lib
++++ b/src/objects/valid/Makefile.valid.lib
+@@ -1,3 +1,5 @@
+ # $Id: Makefile.valid.lib 156738 2009-04-07 16:35:10Z ucko $
+ LIB = valid
+ SRC = valid__ valid___
++
++DLL_LIB = xser xregexp
+diff --git a/src/objects/variation/Makefile.variation.lib b/src/objects/variation/Makefile.variation.lib
+index f21f84a..9ba5e9d 100644
+--- a/src/objects/variation/Makefile.variation.lib
++++ b/src/objects/variation/Makefile.variation.lib
+@@ -1,2 +1,3 @@
+ LIB = variation
+ SRC = variation__ variation___
++DLL_LIB = xser general seq
+diff --git a/src/objmgr/split/Makefile.id2_split.lib b/src/objmgr/split/Makefile.id2_split.lib
+index fafa70a..8a53975 100644
+--- a/src/objmgr/split/Makefile.id2_split.lib
++++ b/src/objmgr/split/Makefile.id2_split.lib
+@@ -17,6 +17,6 @@ LIB = id2_split
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
+
+-DLL_LIB = $(SOBJMGR_LIBS)
++DLL_LIB = $(SOBJMGR_LIBS) seqsplit xcompress
+
+ WATCHERS = vasilche
+diff --git a/src/objmgr/util/Makefile.util.lib b/src/objmgr/util/Makefile.util.lib
+index 90eeee0..138e836 100644
+--- a/src/objmgr/util/Makefile.util.lib
++++ b/src/objmgr/util/Makefile.util.lib
+@@ -10,3 +10,4 @@ LIB = xobjutil
+
+ WATCHERS = ucko vasilche
+
++DLL_LIB = xser xobjmgr
+diff --git a/src/objtools/align/Makefile.xalntool.lib b/src/objtools/align/Makefile.xalntool.lib
+index cb9846d..9c2a8f9 100644
+--- a/src/objtools/align/Makefile.xalntool.lib
++++ b/src/objtools/align/Makefile.xalntool.lib
+@@ -6,3 +6,5 @@ ASN_DEP = seqset
+
+ LIB = xalntool
+ SRC = alngraphic
++
++DLL_LIB = access dbapi_driver general seq xhtml xncbi xobjmgr xobjutil xser # align_format axf blastinput
+diff --git a/src/objtools/align_format/Makefile.align_format.lib b/src/objtools/align_format/Makefile.align_format.lib
+index 4b3e59e..c67c352 100644
+--- a/src/objtools/align_format/Makefile.align_format.lib
++++ b/src/objtools/align_format/Makefile.align_format.lib
+@@ -18,3 +18,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
+ # LIB_OR_DLL = dll
+
+ WATCHERS = zaretska jianye madden camacho
++
++DLL_LIB = seqdb blastdb xser xhtml gene_info xnetblast blast_services ncbi_xloader_genbank xalnmgr xcgi xobjread xobjutil
+diff --git a/src/objtools/alnmgr/Makefile.alnmgr.lib b/src/objtools/alnmgr/Makefile.alnmgr.lib
+index e32c351..41355ff 100644
+--- a/src/objtools/alnmgr/Makefile.alnmgr.lib
++++ b/src/objtools/alnmgr/Makefile.alnmgr.lib
+@@ -12,3 +12,4 @@ SRC = aln_builders aln_converters aln_generators aln_seqid aln_serial \
+
+ WATCHERS = todorov dicuccio grichenk
+
++DLL_LIB = tables dbapi_driver ncbi_xcache_bdb seq seqset sequtil xncbi xobjmgr xobjutil xser # align_format axf
+diff --git a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
+index d8177ed..aa4d8e4 100644
+--- a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
++++ b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
+@@ -18,3 +18,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
+ # CXXFLAGS = $(FAST_CXXFLAGS)
+ #
+ # LIB_OR_DLL = dll
++
++DLL_LIB = xncbi xser xobjutil seq seqdb
+diff --git a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
+index bf5fd1b..c32aca4 100644
+--- a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
++++ b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
+@@ -4,3 +4,5 @@ WATCHERS = camacho
+
+ LIB = gene_info
+ SRC = gene_info gene_info_reader file_utils
++
++DLL_LIB = xncbi
+diff --git a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
+index b0a00dc..37569f8 100644
+--- a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
++++ b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
+@@ -6,3 +6,5 @@ LIB = gene_info_writer
+ SRC = gene_info_writer
+
+ ASN_DEP = blastdb
++
++DLL_LIB = gene_info xncbi seqdb
+diff --git a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
+index 25898aa..0b0e478 100644
+--- a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
++++ b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
+@@ -29,3 +29,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
+ WATCHERS = maning camacho
++
++DLL_LIB = blastdb xobjmgr
+diff --git a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
+index 7b9c8e1..6dbdbaa 100644
+--- a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
++++ b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
+@@ -13,3 +13,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
+ WATCHERS = maning camacho
++
++DLL_LIB = seq blastdb seqdb xobjmgr xobjread xutil
+diff --git a/src/objtools/blast/services/Makefile.blast_services.lib b/src/objtools/blast/services/Makefile.blast_services.lib
+index 10a878c..7a70b22 100644
+--- a/src/objtools/blast/services/Makefile.blast_services.lib
++++ b/src/objtools/blast/services/Makefile.blast_services.lib
+@@ -12,3 +12,4 @@ CFLAGS = $(FAST_CFLAGS)
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++DLL_LIB = xncbi xser xnetblast xnetblastcli
+diff --git a/src/objtools/cddalignview/Makefile.cddalignview.lib b/src/objtools/cddalignview/Makefile.cddalignview.lib
+index 8e39baa..f4d3a35 100644
+--- a/src/objtools/cddalignview/Makefile.cddalignview.lib
++++ b/src/objtools/cddalignview/Makefile.cddalignview.lib
+@@ -11,3 +11,5 @@ SRC = \
+ cav_seqset
+
+ LIB = xcddalignview
++
++DLL_LIB = cdd dbapi_driver general ncbimime seq seqset xncbi xser # align_format axf ncbi_xloader_bam
+diff --git a/src/objtools/cleanup/Makefile.cleanup.lib b/src/objtools/cleanup/Makefile.cleanup.lib
+index 663d755..ad7b3cf 100644
+--- a/src/objtools/cleanup/Makefile.cleanup.lib
++++ b/src/objtools/cleanup/Makefile.cleanup.lib
+@@ -10,7 +10,7 @@ SRC = autogenerated_cleanup cleanup \
+ cleanup_utils \
+ newcleanupp
+
+-DLL_LIB = xregexp $(PCRE_LIB)
++DLL_LIB = xregexp $(PCRE_LIB) access biblio general pub seq seqset sequtil submit xobjmgr xobjutil xser
+ LIB = xcleanup
+
+ LIBS = $(PCRE_LIBS)
+diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
+index 80af69f..704ed7a 100644
+--- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
++++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
+@@ -6,3 +6,6 @@ SRC = bdbloader cached_sequence local_blastdb_adapter
+ ASN_DEP = blastdb seqset
+
+ WATCHERS = camacho
++
++DLL_LIB = seqdb
++
+diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
+index 80abb48..2ddec92 100644
+--- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
++++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
+@@ -6,3 +6,5 @@ SRC = bdbloader_rmt remote_blastdb_adapter
+ ASN_DEP = blastdb xnetblast
+
+ WATCHERS = camacho
++
++DLL_LIB = blast_services ncbi_xloader_blastdb xobjmgr
+diff --git a/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib b/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
+index a51042b..fa92fc9 100644
+--- a/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
++++ b/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
+@@ -9,3 +9,5 @@ LIB = ncbi_xloader_cdd
+ SRC = cdd
+
+ ASN_DEP = seqset
++
++DLL_LIB = dbapi_driver general seq seqset xconnect xncbi xobjmgr xser # align_format axf ncbi_xloader_bam
+diff --git a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
+index f2b2b49..864e4b1 100644
+--- a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
++++ b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
+@@ -12,6 +12,6 @@ LIB = ncbi_xreader
+ LIB_OR_DLL = both
+
+ # Dependencies for shared library
+-DLL_LIB =
++DLL_LIB = xcompress xobjmgr seqsplit xconnect id1 id2
+
+ WATCHERS = vasilche
+diff --git a/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib b/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
+index 0a29cbf..74c30dc 100644
+--- a/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
++++ b/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
+@@ -15,3 +15,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS) $(Z_INCLUDE)
+ # DLL_LIB = xconnect ncbi_xreader$(DLL)
+
+ WATCHERS = vasilche
++
++DLL_LIB = xncbi gene_info id2 ncbi_xreader xconnect xser
+diff --git a/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib b/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
+index 8d09d8c..d6040ed 100644
+--- a/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
++++ b/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
+@@ -7,3 +7,5 @@ ASN_DEP = seq seqset seqedit
+
+
+ WATCHERS = vasilche
++
++DLL_LIB = dbapi_driver seq seqedit seqset xncbi xobjmgr xser # axf
+diff --git a/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib b/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
+index d2debd5..33fed34 100644
+--- a/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
++++ b/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
+@@ -9,3 +9,5 @@ LIB = ncbi_xloader_trace
+ SRC = trace_chgr
+
+ ASN_DEP = id1
++
++DLL_LIB = dbapi_driver general id1 id1cli seq xncbi xobjmgr xser # align_format axf
+diff --git a/src/objtools/edit/Makefile.edit.lib b/src/objtools/edit/Makefile.edit.lib
+index 7ce0d11..f5458c5 100644
+--- a/src/objtools/edit/Makefile.edit.lib
++++ b/src/objtools/edit/Makefile.edit.lib
+@@ -11,3 +11,5 @@ LIB = xobjedit
+ ASN_DEP = seqset
+
+ WATCHERS = bollin
++
++DLL_LIB = xncbi seq xobjutil xobjmgr
+diff --git a/src/objtools/eutils/api/Makefile.eutils.lib b/src/objtools/eutils/api/Makefile.eutils.lib
+index da71ea9..b444e72 100644
+--- a/src/objtools/eutils/api/Makefile.eutils.lib
++++ b/src/objtools/eutils/api/Makefile.eutils.lib
+@@ -10,3 +10,5 @@ ASN_DEP = einfo esearch egquery epost elink esummary espell uilist \
+ ehistory
+
+ WATCHERS = grichenk
++
++DLL_LIB = dbapi_driver xconnect xncbi xser # align_format axf ncbi_xloader_bam
+diff --git a/src/objtools/eutils/egquery/Makefile.egquery.lib b/src/objtools/eutils/egquery/Makefile.egquery.lib
+index 82b4ed0..7030a29 100644
+--- a/src/objtools/eutils/egquery/Makefile.egquery.lib
++++ b/src/objtools/eutils/egquery/Makefile.egquery.lib
+@@ -4,3 +4,5 @@ LIB = egquery
+ SRC = egquery__ egquery___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/ehistory/Makefile.ehistory.lib b/src/objtools/eutils/ehistory/Makefile.ehistory.lib
+index f99ca0f..5683a74 100644
+--- a/src/objtools/eutils/ehistory/Makefile.ehistory.lib
++++ b/src/objtools/eutils/ehistory/Makefile.ehistory.lib
+@@ -4,3 +4,5 @@ LIB = ehistory
+ SRC = ehistory__ ehistory___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/einfo/Makefile.einfo.lib b/src/objtools/eutils/einfo/Makefile.einfo.lib
+index e18413d..7eaee71 100644
+--- a/src/objtools/eutils/einfo/Makefile.einfo.lib
++++ b/src/objtools/eutils/einfo/Makefile.einfo.lib
+@@ -4,3 +4,5 @@ LIB = einfo
+ SRC = einfo__ einfo___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/elink/Makefile.elink.lib b/src/objtools/eutils/elink/Makefile.elink.lib
+index 87f352c..692835c 100644
+--- a/src/objtools/eutils/elink/Makefile.elink.lib
++++ b/src/objtools/eutils/elink/Makefile.elink.lib
+@@ -4,3 +4,5 @@ LIB = elink
+ SRC = elink__ elink___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/epost/Makefile.epost.lib b/src/objtools/eutils/epost/Makefile.epost.lib
+index 4a456ed..d73f41b 100644
+--- a/src/objtools/eutils/epost/Makefile.epost.lib
++++ b/src/objtools/eutils/epost/Makefile.epost.lib
+@@ -4,3 +4,5 @@ LIB = epost
+ SRC = epost__ epost___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/esearch/Makefile.esearch.lib b/src/objtools/eutils/esearch/Makefile.esearch.lib
+index bb5b64b..71912da 100644
+--- a/src/objtools/eutils/esearch/Makefile.esearch.lib
++++ b/src/objtools/eutils/esearch/Makefile.esearch.lib
+@@ -4,3 +4,5 @@ LIB = esearch
+ SRC = esearch__ esearch___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/espell/Makefile.espell.lib b/src/objtools/eutils/espell/Makefile.espell.lib
+index 7cf1a34..25be846 100644
+--- a/src/objtools/eutils/espell/Makefile.espell.lib
++++ b/src/objtools/eutils/espell/Makefile.espell.lib
+@@ -4,3 +4,5 @@ LIB = espell
+ SRC = espell__ espell___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/esummary/Makefile.esummary.lib b/src/objtools/eutils/esummary/Makefile.esummary.lib
+index 4d3e058..1f74c06 100644
+--- a/src/objtools/eutils/esummary/Makefile.esummary.lib
++++ b/src/objtools/eutils/esummary/Makefile.esummary.lib
+@@ -4,3 +4,5 @@ LIB = esummary
+ SRC = esummary__ esummary___
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/linkout/Makefile.linkout.lib b/src/objtools/eutils/linkout/Makefile.linkout.lib
+index 19b2b8a..77dcc3c 100644
+--- a/src/objtools/eutils/linkout/Makefile.linkout.lib
++++ b/src/objtools/eutils/linkout/Makefile.linkout.lib
+@@ -4,3 +4,5 @@ SRC = linkout__ linkout___
+ LIB = linkout
+
+ WATCHERS = grichenk
++
++DLL_LIB = xser
+diff --git a/src/objtools/eutils/uilist/Makefile.uilist.lib b/src/objtools/eutils/uilist/Makefile.uilist.lib
+index b49c3c5..2ee63f0 100644
+--- a/src/objtools/eutils/uilist/Makefile.uilist.lib
++++ b/src/objtools/eutils/uilist/Makefile.uilist.lib
+@@ -4,3 +4,5 @@ SRC = uilist__ uilist___
+ LIB = uilist
+
+ WATCHERS = grichenk
++
++DLL_LIB = access dbapi_driver xncbi xser # align_format axf
+diff --git a/src/objtools/format/Makefile.xformat.lib b/src/objtools/format/Makefile.xformat.lib
+index a4fc469..fa58b3c 100644
+--- a/src/objtools/format/Makefile.xformat.lib
++++ b/src/objtools/format/Makefile.xformat.lib
+@@ -19,3 +19,5 @@ SRC = accession_item basecount_item comment_item contig_item date_item \
+ gather_iter html_anchor_item inst_info_map
+
+ WATCHERS = ludwigf dicuccio kornbluh
++
++DLL_LIB = submit connect xncbi gbseq xobjmgr xobjutil xalnmgr xconnect
+diff --git a/src/objtools/lds/Makefile.lds.lib b/src/objtools/lds/Makefile.lds.lib
+index e371035..689cfb4 100644
+--- a/src/objtools/lds/Makefile.lds.lib
++++ b/src/objtools/lds/Makefile.lds.lib
+@@ -9,6 +9,6 @@ SRC = lds lds_reader lds_query \
+ lds_coreobjreader lds_files lds_object lds_manager
+
+ # Dependencies for shared library
+-DLL_LIB = bdb
++DLL_LIB = bdb seq xobjread xobjmgr xobjutil
+
+ WATCHERS = vasilche
+diff --git a/src/objtools/manip/Makefile.xobjmanip.lib b/src/objtools/manip/Makefile.xobjmanip.lib
+index 300ceb2..4a81ac9 100644
+--- a/src/objtools/manip/Makefile.xobjmanip.lib
++++ b/src/objtools/manip/Makefile.xobjmanip.lib
+@@ -6,3 +6,5 @@ LIB = xobjmanip
+ SRC = sage_manip
+
+ WATCHERS = dicuccio
++
++DLL_LIB = xncbi general
+diff --git a/src/objtools/readers/Makefile.xobjread.lib b/src/objtools/readers/Makefile.xobjread.lib
+index 0fbffd4..4ca9fed 100644
+--- a/src/objtools/readers/Makefile.xobjread.lib
++++ b/src/objtools/readers/Makefile.xobjread.lib
+@@ -19,5 +19,4 @@ SRC = read_util format_guess_ex \
+ best_feat_finder source_mod_parser fasta_exception
+
+
+-DLL_LIB = creaders
+-
++DLL_LIB = creaders xncbi seq biblio seqset
+diff --git a/src/objtools/readers/Makefile.xobjreadex.lib b/src/objtools/readers/Makefile.xobjreadex.lib
+index 85eefe2..9f317ae 100644
+--- a/src/objtools/readers/Makefile.xobjreadex.lib
++++ b/src/objtools/readers/Makefile.xobjreadex.lib
+@@ -8,4 +8,4 @@ LIB = xobjreadex
+ SRC = glimmer_reader idmapper idmapper_builtin idmapper_config \
+ idmapper_database source_mod_parser_wrapper
+
+-DLL_LIB = xobjread
++DLL_LIB = xobjread xncbi xutil seq xobjmgr xobjutil
+diff --git a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
+index 687af1e..f48568c 100644
+--- a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
++++ b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
+@@ -11,6 +11,6 @@ mask_writer_seqloc \
+ mask_writer_blastdb_maskinfo
+
+ ASN_DEP = seqset
+-DLL_LIB = seqdb blastdb
++DLL_LIB = seqdb blastdb xobjread xobjutil
+
+ WATCHERS = morgulis camacho
+diff --git a/src/objtools/simple/Makefile.xobjsimple.lib b/src/objtools/simple/Makefile.xobjsimple.lib
+index dab25d6..f676dc7 100644
+--- a/src/objtools/simple/Makefile.xobjsimple.lib
++++ b/src/objtools/simple/Makefile.xobjsimple.lib
+@@ -10,3 +10,4 @@ ASN_DEP = seqset
+ LIB = xobjsimple
+ SRC = simple_om
+
++DLL_LIB = xobjmgr ncbi_xloader_genbank
+diff --git a/src/objtools/snputil/Makefile.snputil.lib b/src/objtools/snputil/Makefile.snputil.lib
+index 15abef3..5ad1560 100644
+--- a/src/objtools/snputil/Makefile.snputil.lib
++++ b/src/objtools/snputil/Makefile.snputil.lib
+@@ -9,3 +9,5 @@ SRC = snp_utils snp_bitfield \
+ ASN_DEP = seqset
+
+ WATCHERS = rudnev
++
++DLL_LIB = general seq xncbi xobjmgr xser
+diff --git a/src/objtools/validator/Makefile.validator.lib b/src/objtools/validator/Makefile.validator.lib
+index 80a74d8..6eec94b 100644
+--- a/src/objtools/validator/Makefile.validator.lib
++++ b/src/objtools/validator/Makefile.validator.lib
+@@ -19,3 +19,5 @@ NOOPT_CXX = $(CXX_WRAPPER) $(CXX) $(CXXFLAGS_ALL:-xO%=)
+
+ lat_lon_country_map.o: $(srcdir)/lat_lon_country_map.cpp
+ $(NOOPT_CXX) $(srcdir)/lat_lon_country_map.cpp -o $@ $(CXX_FILTER)
++
++DLL_LIB = xncbi xobjutil xalnmgr xformat taxon3 valerr valid
+diff --git a/src/objtools/writers/Makefile.xobjwrite.lib b/src/objtools/writers/Makefile.xobjwrite.lib
+index cd6596b..a7d0c01 100644
+--- a/src/objtools/writers/Makefile.xobjwrite.lib
++++ b/src/objtools/writers/Makefile.xobjwrite.lib
+@@ -15,3 +15,4 @@ SRC = agp_write \
+
+ WATCHERS = ludwigf boukn
+
++DLL_LIB = xobjutil xalnmgr
+diff --git a/src/sample/app/asn/Makefile.sample_asn.lib b/src/sample/app/asn/Makefile.sample_asn.lib
+index 0db9ebd..26e6ad9 100644
+--- a/src/sample/app/asn/Makefile.sample_asn.lib
++++ b/src/sample/app/asn/Makefile.sample_asn.lib
+@@ -10,3 +10,5 @@ LIB = sample_asn
+ ASN_DEP = general
+
+ WATCHERS = gouriano
++
++DLL_LIB = access align_format axf dbapi_driver general xncbi xser
+diff --git a/src/sample/app/soap/Makefile.soap_dataobj.lib b/src/sample/app/soap/Makefile.soap_dataobj.lib
+index 4b87f51..c398ded 100644
+--- a/src/sample/app/soap/Makefile.soap_dataobj.lib
++++ b/src/sample/app/soap/Makefile.soap_dataobj.lib
+@@ -2,3 +2,5 @@ LIB = soap_dataobj
+ SRC = soap_dataobj__ soap_dataobj___
+
+ WATCHERS = gouriano
++
++DLL_LIB = access align_format axf dbapi_driver xncbi xser
+diff --git a/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib b/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
+index f9d6103..4c22831 100644
+--- a/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
++++ b/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
+@@ -2,3 +2,5 @@ LIB = asn_sample_lib
+ SRC = asn_sample_lib__ asn_sample_lib___
+
+ WATCHERS = gouriano
++
++DLL_LIB = access align_format axf dbapi_driver xncbi xser
+diff --git a/src/sample/lib/basic/Makefile.basic_sample_lib.lib b/src/sample/lib/basic/Makefile.basic_sample_lib.lib
+index a6ba11a..364d9fc 100644
+--- a/src/sample/lib/basic/Makefile.basic_sample_lib.lib
++++ b/src/sample/lib/basic/Makefile.basic_sample_lib.lib
+@@ -5,3 +5,5 @@ SRC = basic_sample_lib
+
+
+ WATCHERS = gouriano
++
++DLL_LIB = xncbi
+diff --git a/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib b/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
+index d2a27ef..a63a7e8 100644
+--- a/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
++++ b/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
+@@ -2,3 +2,5 @@ LIB = dtd_sample_lib
+ SRC = dtd_sample_lib__ dtd_sample_lib___
+
+ WATCHERS = gouriano
++
++DLL_LIB = access align_format axf dbapi_driver xncbi xser
+diff --git a/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib b/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
+index 4b7b6e2..838e8ea 100644
+--- a/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
++++ b/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
+@@ -2,3 +2,5 @@ LIB = xsd_sample_lib
+ SRC = xsd_sample_lib__ xsd_sample_lib___
+
+ WATCHERS = gouriano
++
++DLL_LIB = access align_format axf dbapi_driver xncbi xser
+diff --git a/src/serial/Makefile.serial.lib b/src/serial/Makefile.serial.lib
+index 2563b5f..efad054 100644
+--- a/src/serial/Makefile.serial.lib
++++ b/src/serial/Makefile.serial.lib
+@@ -19,3 +19,5 @@ SRC = \
+ LIB = xser
+
+ WATCHERS = gouriano
++
++DLL_LIB = xncbi xutil
+diff --git a/src/serial/soap/Makefile.soap.lib b/src/serial/soap/Makefile.soap.lib
+index e77d4ee..3b28bc4 100644
+--- a/src/serial/soap/Makefile.soap.lib
++++ b/src/serial/soap/Makefile.soap.lib
+@@ -8,3 +8,5 @@ SRC = soap_message soap_readhook soap_writehook soap_client \
+ LIB = xsoap
+
+ WATCHERS = gouriano
++
++DLL_LIB = xncbi xutil xser xconnect
+diff --git a/src/serial/soap/Makefile.soap_server.lib b/src/serial/soap/Makefile.soap_server.lib
+index c961496..0ccb2f0 100644
+--- a/src/serial/soap/Makefile.soap_server.lib
++++ b/src/serial/soap/Makefile.soap_server.lib
+@@ -9,3 +9,5 @@ LIB = xsoap_server
+ REQUIRES = cgi
+
+ WATCHERS = gouriano
++
++DLL_LIB = xncbi xutil xcgi xsoap xser
+diff --git a/src/serial/test/Makefile.we_cpp.lib b/src/serial/test/Makefile.we_cpp.lib
+index 9877691..599ef5d 100644
+--- a/src/serial/test/Makefile.we_cpp.lib
++++ b/src/serial/test/Makefile.we_cpp.lib
+@@ -3,3 +3,4 @@ SRC = we_cpp__ we_cpp___
+
+ WATCHERS = gouriano
+
++DLL_LIB = xncbi xutil xser
+diff --git a/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib b/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
+index 4896661..8e2ad56 100644
+--- a/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
++++ b/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
+@@ -12,7 +12,7 @@ ASN_DEP = seqset seq
+
+ LIB_OR_DLL = both
+
+-DLL_LIB = $(SOBJMGR_LIBS) bamread$(STATIC) $(BAM_LIBS) $(CMPRS_LIB)
++DLL_LIB = $(SOBJMGR_LIBS) bamread$(STATIC) $(BAM_LIBS) $(CMPRS_LIB) xobjreadex
+ LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
+
+ CPPFLAGS = $(SRA_INCLUDE) -DNCBI_XLOADER_BAM_EXPORTS $(ORIG_CPPFLAGS)
+diff --git a/src/sra/sdk/libs/align/Makefile.align-writer.lib b/src/sra/sdk/libs/align/Makefile.align-writer.lib
+index f2a2f58..f61b25a 100644
+--- a/src/sra/sdk/libs/align/Makefile.align-writer.lib
++++ b/src/sra/sdk/libs/align/Makefile.align-writer.lib
+@@ -6,7 +6,7 @@ LIB = align-writer
+ SRC = dna-reverse-cmpl reader-cmn reader-refseq refseq-mgr writer-cmn \
+ writer-refseq writer-alignment writer-sequence writer-ref writer-reference
+
+-DLL_LIB = wvdb wkdb load kfg kfs klib $(Z_LIB)
++DLL_LIB = wvdb wkdb load kfg kfs klib kapp $(Z_LIB)
+ LIBS = $(Z_LIBS) $(ORIG_LIBS)
+
+ CPPFLAGS = $(SRA_INCLUDE) $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY $(ORIG_CPPFLAGS)
+diff --git a/src/util/Makefile.util.lib b/src/util/Makefile.util.lib
+index f103ff1..829a71c 100644
+--- a/src/util/Makefile.util.lib
++++ b/src/util/Makefile.util.lib
+@@ -14,3 +14,5 @@ PROJ_TAG = core
+ LIBS = $(ORIG_LIBS)
+
+ WATCHERS = vakatov
++
++DLL_LIB = xncbi
+diff --git a/src/util/compress/api/Makefile.compress.lib b/src/util/compress/api/Makefile.compress.lib
+index ae22234..2ce803a 100644
+--- a/src/util/compress/api/Makefile.compress.lib
++++ b/src/util/compress/api/Makefile.compress.lib
+@@ -6,7 +6,7 @@ LIB = xcompress
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
+
+-DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB)
++DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB) xutil xncbi
+ LIBS = $(BZ2_LIBS) $(Z_LIBS) $(LZO_LIBS)
+
+ WATCHERS = ivanov
+diff --git a/src/util/qparse/Makefile.xqueryparse.lib b/src/util/qparse/Makefile.xqueryparse.lib
+index a003930..0505da7 100644
+--- a/src/util/qparse/Makefile.xqueryparse.lib
++++ b/src/util/qparse/Makefile.xqueryparse.lib
+@@ -7,3 +7,5 @@ query_parser_bison.tab.c : query_parser_bison.y
+ bison -v -p ncbi_q_ -o query_parser_bison.tab.c query_parser_bison.y
+
+ WATCHERS = kuznets
++
++DLL_LIB = xncbi xutil
+diff --git a/src/util/regexp/Makefile.regexp.lib b/src/util/regexp/Makefile.regexp.lib
+index 0f8d5e8..83a82af 100644
+--- a/src/util/regexp/Makefile.regexp.lib
++++ b/src/util/regexp/Makefile.regexp.lib
+@@ -10,3 +10,5 @@ LIB = regexp
+ CPPFLAGS = -I$(includedir)/util/regexp -DHAVE_CONFIG_H $(ORIG_CPPFLAGS)
+
+ WATCHERS = ivanov
++
++DLL_LIB = xncbi xutil
+diff --git a/src/util/sequtil/Makefile.sequtil.lib b/src/util/sequtil/Makefile.sequtil.lib
+index c068a32..453c911 100644
+--- a/src/util/sequtil/Makefile.sequtil.lib
++++ b/src/util/sequtil/Makefile.sequtil.lib
+@@ -4,3 +4,5 @@ LIB = sequtil
+ SRC = sequtil sequtil_convert sequtil_convert_imp sequtil_manip sequtil_tables sequtil_shared
+
+ WATCHERS = shomrat
++
++DLL_LIB = xncbi xutil
+diff --git a/src/util/xregexp/Makefile.xregexp.lib b/src/util/xregexp/Makefile.xregexp.lib
+index 965fac4..3accea3 100644
+--- a/src/util/xregexp/Makefile.xregexp.lib
++++ b/src/util/xregexp/Makefile.xregexp.lib
+@@ -6,7 +6,7 @@ LIB = xregexp
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
+
+-DLL_LIB = $(PCRE_LIB)
++DLL_LIB = $(PCRE_LIB) xutil xncbi
+ LIBS = $(PCRE_LIBS)
+
+ WATCHERS = ivanov
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch
new file mode 100644
index 0000000..8209603
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch
@@ -0,0 +1,213 @@
+ src/build-system/configure | 34 +++++++++++++++++++++++-----------
+ src/build-system/configure.ac | 33 ++++++++++++++++++++++-----------
+ 2 files changed, 45 insertions(+), 22 deletions(-)
+
+diff --git a/src/build-system/configure b/src/build-system/configure
+index 82fc9ef..d31a4f2 100755
+--- a/src/build-system/configure
++++ b/src/build-system/configure
+@@ -924,7 +924,7 @@ Optional Packages:
+ --without-distcc do not automatically use distcc if available
+ --without-ncbi-c do not use NCBI C Toolkit
+ --without-sss do not use NCBI SSS libraries
+- --without-utils do not use NCBI SSS UTIL library
++ --without-sssutils do not use NCBI SSS UTIL library
+ --without-sssdb do not use NCBI SSS DB library
+ --with-included-sss use the in-tree copy of SSS
+ --with-z=DIR use zlib installation in DIR
+@@ -2835,12 +2835,12 @@ check ncbi-public strip pch caution ccache distcc \
+ ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+ geo included-geo \
+ z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
+-ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
++ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
+ bdb python jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
+ gif jpeg tiff png xpm magic curl 3psw \
+ local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench"
++serial objects dbapi app ctools gui algo internal gbench x"
+
+ x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+
+@@ -2864,6 +2864,7 @@ for x_arg in "$@" ; do
+ case "$x_arg" in
+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
++ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
+ { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
+ echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
+@@ -2876,6 +2877,7 @@ echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
+ | --with-universal=* | --with-tcheck=* \
+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
++ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
+ | [A-Z]*=* \
+ | --with-z=* | --with-bz2=* | --with-lzo=* \
+ | --with-pcre=* \
+@@ -3023,7 +3025,8 @@ echo "$as_me: error: --without-extra-action is not allowed" >&2;}
+ fi
+
+ case "$with_projects" in
+- "") if test -r projects; then
++ ""|yes)
++ if test -r projects; then
+ { echo "$as_me:$LINENO: using default projects file \"projects\"." >&5
+ echo "$as_me: using default projects file \"projects\"." >&6;}
+ with_projects=projects
+@@ -3049,6 +3052,16 @@ echo "$as_me: WARNING: default projects file \"projects\" is a dangling link." >
+ ;;
+ esac
+
++if test -n "$with_projects"; then
++ case "$with_projects" in
++ /* ) abs_projects=$with_projects ;;
++ yes) abs_projects=$srcdir/projects ;;
++ * ) abs_projects=$srcdir/$with_projects ;;
++ esac
++ test -r "$abs_projects" || \
++ as_fn_error $? "unable to read requested projects file \"$abs_projects\"." "$LINENO" 5
++fi
++
+
+ #### Always define this
+
+@@ -32712,7 +32725,7 @@ else
+ sep=", "
+ fi
+ if test -n "$reason" -a "$with_internal" = "yes"; then
+- if test -z "$with_projects" -o "$with_projects" = "no"; then
++ if test -z "$with_projects"; then
+ { { echo "$as_me:$LINENO: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&5
+ echo "$as_me: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&2;}
+ { (exit 1); exit 1; }; }
+@@ -34949,11 +34962,9 @@ if test "$with_flat_makefile" != "no"; then
+ else
+ cfm_flags='-remoteptb'
+ fi
+- case "$with_projects" in
+- yes ) cfm_flags="$cfm_flags -p projects" ;;
+- no | '' ) ;;
+- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
+- esac
++ if test -n "$with_projects"; then
++ cfm_flags="$cfm_flags -p $with_projects"
++ fi
+ if test "$with_configure_dialog" = yes; then
+ cfm_flags="$cfm_flags -cfg"
+ fi
+@@ -34997,7 +35008,8 @@ lib)
+ esac
+
+ if test -n "$with_projects"; then
+- build_proj="To build selected projects: cd $builddir && make all_p"
++ build_proj="To build selected projects (as listed in \"$with_projects\"):
++ cd $builddir && make all_p"
+ fi
+
+ cat << EOCONF
+diff --git a/src/build-system/configure.ac b/src/build-system/configure.ac
+index 7b733af..3b55bf5 100644
+--- a/src/build-system/configure.ac
++++ b/src/build-system/configure.ac
+@@ -222,7 +222,7 @@ AC_ARG_WITH(ncbi-c,
+ AC_ARG_WITH(sss,
+ [ --without-sss do not use NCBI SSS libraries])
+ AC_ARG_WITH(sssutils,
+- [ --without-utils do not use NCBI SSS UTIL library])
++ [ --without-sssutils do not use NCBI SSS UTIL library])
+ AC_ARG_WITH(sssdb,
+ [ --without-sssdb do not use NCBI SSS DB library])
+ AC_ARG_WITH(included-sss,
+@@ -462,12 +462,12 @@ check ncbi-public strip pch caution ccache distcc \
+ ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+ geo included-geo \
+ z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
+-ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
++ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
+ bdb python jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
+ gif jpeg tiff png xpm magic curl 3psw \
+ local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench"
++serial objects dbapi app ctools gui algo internal gbench x"
+
+ changequote(, )dnl
+ x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+@@ -493,6 +493,7 @@ for x_arg in "$@" ; do
+ case "$x_arg" in
+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
++ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
+ AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
+ ;;
+@@ -503,6 +504,7 @@ for x_arg in "$@" ; do
+ | --with-universal=* | --with-tcheck=* \
+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
++ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
+ | [[A-Z]*=*] \
+ | --with-z=* | --with-bz2=* | --with-lzo=* \
+ | --with-pcre=* \
+@@ -581,7 +583,8 @@ if test "$with_extra_action" = "no" ; then
+ fi
+
+ case "$with_projects" in
+- "") if test -r projects; then
++ ""|yes)
++ if test -r projects; then
+ AC_MSG_NOTICE([using default projects file "projects".])
+ with_projects=projects
+ AC_SUBST(PROJECTS, "\$(top_srcdir)/projects")
+@@ -599,6 +602,15 @@ case "$with_projects" in
+ * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
+ esac
+
++if test -n "$with_projects"; then
++ case "$with_projects" in
++ /* ) abs_projects=$with_projects ;;
++ yes) abs_projects=$srcdir/projects ;;
++ * ) abs_projects=$srcdir/$with_projects ;;
++ esac
++ test -r "$abs_projects" || \
++ AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
++fi
+
+ #### Always define this
+ AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
+@@ -6198,7 +6210,7 @@ else
+ sep=", "
+ fi
+ if test -n "$reason" -a "$with_internal" = "yes"; then
+- if test -z "$with_projects" -o "$with_projects" = "no"; then
++ if test -z "$with_projects"; then
+ AC_MSG_ERROR([--with-internal: Cannot build INTERNAL projects: missing $reason])
+ else
+ AC_MSG_WARN([--with-internal: Cannot build all INTERNAL projects: missing $reason])
+@@ -6807,11 +6819,9 @@ if test "$with_flat_makefile" != "no"; then
+ else
+ cfm_flags='-remoteptb'
+ fi
+- case "$with_projects" in
+- yes ) cfm_flags="$cfm_flags -p projects" ;;
+- no | '' ) ;;
+- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
+- esac
++ if test -n "$with_projects"; then
++ cfm_flags="$cfm_flags -p $with_projects"
++ fi
+ if test "$with_configure_dialog" = yes; then
+ cfm_flags="$cfm_flags -cfg"
+ fi
+@@ -6854,7 +6864,8 @@ lib)
+ esac
+
+ if test -n "$with_projects"; then
+- build_proj="To build selected projects: cd $builddir && make all_p"
++ build_proj="To build selected projects (as listed in \"$with_projects\"):
++ cd $builddir && make all_p"
+ fi
+
+ cat << EOCONF
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
new file mode 100644
index 0000000..8121a79
--- /dev/null
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -0,0 +1,306 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild,v 1.3 2012/11/05 11:22:49 jlec Exp $
+
+EAPI=5
+
+inherit eutils flag-o-matic multilib toolchain-funcs
+
+MY_TAG="Jun_15_2010"
+MY_Y="${MY_TAG/*_/}"
+MY_PV="9_0_0"
+MY_P="ncbi_cxx--${MY_PV}"
+#ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz
+
+DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
+SRC_URI="
+ ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
+# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
+
+LICENSE="public-domain"
+SLOT="0"
+IUSE="
+ debug static-libs static threads pch
+ test wxwidgets odbc
+ berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif
+ glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
+ sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X"
+#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS=""
+
+# sys-libs/db should be compiled with USE=cxx
+DEPEND="
+ berkdb? ( sys-libs/db:4.3[cxx] )
+ ftds? ( dev-db/freetds )
+ boost? ( dev-libs/boost )
+ curl? ( net-misc/curl )
+ sqlite? ( dev-db/sqlite )
+ sqlite3? ( dev-db/sqlite:3 )
+ mysql? ( virtual/mysql )
+ gnutls? ( net-libs/gnutls[lzo] )
+ ssl? ( dev-libs/openssl )
+ fltk? ( x11-libs/fltk )
+ opengl? ( virtual/opengl )
+ mesa? ( media-libs/mesa
+ media-libs/glew
+ )
+ glut? ( media-libs/freeglut )
+ freetype? ( media-libs/freetype )
+ fastcgi? ( www-apache/mod_fastcgi )
+ python? ( dev-lang/python )
+ cppunit? ( dev-util/cppunit )
+ icu? ( dev-libs/icu )
+ expat? ( dev-libs/expat )
+ sablotron? ( app-text/sablotron )
+ xml? ( dev-libs/libxml2 )
+ xslt? ( dev-libs/libxslt )
+ xerces? ( dev-libs/xerces-c )
+ xalan? ( dev-libs/xalan-c )
+ muparser? ( dev-cpp/muParser )
+ hdf5? ( sci-libs/hdf5 )
+ gif? ( media-libs/giflib )
+ jpeg? ( virtual/jpeg )
+ png? ( media-libs/libpng )
+ tiff? ( media-libs/tiff )
+ xpm? ( x11-libs/libXpm )
+ dev-libs/lzo
+ app-arch/bzip2
+ dev-libs/libpcre"
+# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
+
+
+# seems muParser is required, also glew is required. configure exitss otherwise
+
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+# filter-ldflags -Wl,--as-needed
+# append-ldflags -Wl,--no-undefined
+# sed -i -e 's/-print-file-name=libstdc++.a//' \
+# -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
+# src/build-system/configure || die
+# epatch \
+# "${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
+# "${FILESDIR}"/curl-types.patch \
+# "${FILESDIR}"/malloc_initialize_upstream_fix.patch \
+# "${FILESDIR}"/respect_CXXFLAGS_configure.ac.patch \
+# "${FILESDIR}"/respect_CXXFLAGS_configure.patch \
+# "${FILESDIR}"/report_project_settings_configure.ac.patch \
+# "${FILESDIR}"/report_project_settings_configure.patch \
+# "${FILESDIR}"/make_install.patch
+
+# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
+
+# "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \
+# "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \
+# "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \
+# "${FILESDIR}"/${PN}-${PV#0.}-libpng15.patch \
+# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
+
+# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
+
+ local PATCHES=(
+ "${FILESDIR}"/${P}-conf-opts.patch
+ "${FILESDIR}"/${P}-as-needed.patch
+ )
+ epatch ${PATCHES[@]}
+
+ tc-export CXX CC
+
+# cd src/build-system || die
+# eaclocal -I.
+# eautoconf
+}
+
+src_configure() {
+ local myconf=()
+ #--without-optimization turn off optimization flags in non-debug mode
+ #--with-profiling build profiled versions of libs and apps
+ #--with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
+ #--with-plugin-auto-load always enable the plugin manager by default
+ #--with-bundles build bundles in addition to dylibs on Mac OS X
+ #--with-bin-release build executables suitable for public release
+ # no dll and such
+ #--with-64 compile to 64-bit code
+ #--with-universal build universal binaries on Mac OS X
+ #--with-universal=CPUs build universal binaries targeting the given CPUs
+ #--without-exe do not build executables
+ #--with-relative-runpath=P specify an executable-relative DLL search path
+ #--with-hard-runpath hard-code runtime path, ignoring LD_LIBRARY_PATH
+ #--with-limited-linker don't attempt to build especially large projects
+ #--with-extra-action= script to call after the configuration is complete
+ #--with-autodep automatic generation of dependencies (GNU make)
+ #--with-fake-root=DIR appear to have been built under DIR
+ #--with-build-root-sfx=X add a user-specified suffix to the build dir name
+ #--without-execopy do not copy built executables to the BIN area
+ #--with-lib-rebuilds ensure that apps use up-to-date libraries
+ #--with-lib-rebuilds=ask ask whether to update each app's libraries
+ #--without-deactivation keep old copies of libraries that no longer build
+ #--without-makefile-auto-update do not auto-update generated makefiles
+ #--with-projects=FILE build projects listed in FILE by default
+ #--without-flat-makefile do not generate an all-encompassing flat makefile
+ #--with-configure-dialog allow interactive flat makefile project selection
+ #--with-saved-settings=F load configuration settings from the file F
+ #--with-check-tools=... use the specified tools for testing
+ #--with-ncbi-public ensure compatibility for all in-house platforms
+ #--with-sybase-local=DIR use local SYBASE install (DIR is optional)
+ #--with-sybase-new use newer SYBASE install (12.5 rather than 12.0)
+ #--without-ftds-renamed do not rename Sybase DBLIB symbols in built-in FTDS
+ #--without-sp do not use SP libraries
+ #--without-orbacus do not use ORBacus CORBA libraries
+ #--with-orbacus=DIR use ORBacus installation in DIR
+ #--with-jni(=JDK-DIR) build Java bindings (against the JDK in JDK-DIR)
+ #--with-sablot=DIR use Sablotron installation in DIR
+ #--without-sablot, do not use Sablotron
+ #--with-oechem=DIR use OpenEye OEChem installation in DIR
+ #--without-oechem do not use OEChem
+ #--with-sge=DIR use Sun Grid Engine installation in DIR
+ #--without-sge do not use Sun Grid Engine
+ #--with-magic=DIR use libmagic installation in DIR
+ #--without-magic do not use libmagic
+ #--without-local-lbsm turn off support for IPC with locally running LBSMD
+ #--without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
+ #--without-connext do not build non-public CONNECT library extensions
+ #--without-serial do not build the serialization library and tools
+ #--without-objects do not generate/build serializeable objects from ASNs
+ #--without-dbapi do not build database connectivity libraries
+ #--without-app do not build standalone applications like ID1_FETCH
+ #--without-gui do not build most graphical projects
+ #--without-algo do not build CPU-intensive algorithms
+ #--without-internal do not build internal projects
+ #--with-gbench ensure that Genome Workbench can be built
+ #--without-gbench do not build Genome Workbench
+ myconf+=(
+ --with-dll
+ --with-lfs
+ --with-build-root="${S}"_build
+ --without-suffix
+ --without-hostspec
+ --without-version
+ --with-bincopy
+ --without-strip
+ --without-ccache
+ --without-distcc
+# --with-ncbi-c
+ --without-ctools
+# --with-sss
+# --with-sssutils
+# --with-sssdb
+# --with-included-sss
+ --with-z="${EPREFIX}/usr"
+ --with-bz2="${EPREFIX}/usr"
+ --with-muparser="${EPREFIX}/usr"
+ --without-sybase
+ --with-autodep
+# --with-3psw=std:netopt favor standard (system) builds of the above pkgs
+ $(use_with debug)
+ $(use_with debug max-debug)
+ $(use_with debug symbols)
+ $(use_with static-libs static)
+ $(use_with static static-exe)
+ $(use_with threads mt)
+ $(use_with prefix runpath "${EPREFIX}/usr/$(get_libdir)/ncbi_cxx")
+ $(use_with test check)
+ $(use_with pch)
+ $(use_with lzo lzo "${EPREFIX}/usr")
+ $(use_with pcre pcre "${EPREFIX}/usr")
+ $(use_with gnutls gnutls "${EPREFIX}/usr")
+ $(use_with ssl openssl "${EPREFIX}/usr")
+ $(use_with ftds ftds "${EPREFIX}/usr")
+ $(use_with mysql mysql "${EPREFIX}/usr")
+ $(use_with fltk fltk "${EPREFIX}/usr")
+ $(use_with opengl opengl "${EPREFIX}/usr")
+ $(use_with mesa mesa "${EPREFIX}/usr")
+ $(use_with opengl glut "${EPREFIX}/usr")
+ $(use_with opengl glew "${EPREFIX}/usr")
+ $(use_with opengl glew-mx)
+ $(use_with wxwidgets wxwidgets "${EPREFIX}/usr")
+ $(use_with wxwidgets wxwidgets-ucs)
+ $(use_with freetype freetype "${EPREFIX}/usr")
+ $(use_with fastcgi fastcgi "${EPREFIX}/usr")
+ $(use_with berkdb bdb "${EPREFIX}/usr")
+ $(use_with odbc odbc "${EPREFIX}/usr")
+ $(use_with python python "${EPREFIX}/usr")
+ $(use_with boost boost "${EPREFIX}/usr")
+ $(use_with sqlite sqlite3 "${EPREFIX}/usr")
+ $(use_with icu icu "${EPREFIX}/usr")
+ $(use_with expat expat "${EPREFIX}/usr")
+ $(use_with xml libxml "${EPREFIX}/usr")
+ $(use_with xml libxslt "${EPREFIX}/usr")
+ $(use_with xerces xerces "${EPREFIX}/usr")
+ $(use_with hdf5 hdf5 "${EPREFIX}/usr")
+ $(use_with xalan xalan "${EPREFIX}/usr")
+# $(use_with gif gif "${EPREFIX}/usr")
+ $(use_with jpeg jpeg "${EPREFIX}/usr")
+ $(use_with tiff tiff "${EPREFIX}/usr")
+ $(use_with png png "${EPREFIX}/usr")
+ $(use_with xpm xpm "${EPREFIX}/usr")
+ $(use_with curl curl "${EPREFIX}/usr")
+# $(use_with X x "${EPREFIX}/usr")
+ $(use_with X x)
+ )
+
+ # http://www.ncbi.nlm.nih.gov/books/NBK7167/
+ use test || myconf+=( --with-projects="${FILESDIR}"/disable-testsuite-compilation.txt )
+
+ # TODO
+ # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
+ # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9
+
+ einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
+
+# bash \
+# ./src/build-system/configure \
+# cd src/build-system || die
+ econf \
+ --srcdir="${S}" \
+ --prefix="${EPREFIX}/usr" \
+ --libdir=/usr/lib64 \
+ ${myconf[@]} || die
+#--without-debug \
+# --with-bin-release \
+# --with-bincopy \
+# --without-static \
+# --with-dll \
+# --with-mt \
+# --with-lfs \
+# --prefix="${ED}"/usr \
+# --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
+# ${myconf} LDFLAGS="-Wl,--no-as-needed" \
+# || die
+# econf ${myconf[@]}
+}
+
+src_compile() {
+ # all_r would ignore the --with-projects contents and build more
+ # emake all_r -C GCC*-Release*/build || die
+ # all_p with compile only selected/required components
+# cd "${S}"_build &&\
+ emake all_p -C "${S}"_build/build
+# emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
+}
+
+src_install() {
+ rm -rvf "${S}"_build/lib/ncbi || die
+ emake install prefix="${ED}/usr" libdir="${ED}/usr/$(get_libdir)/${PN}"
+
+# dobin "${S}"_build/bin/*
+# dolib.so "${S}"_build/lib/*so*
+# dolib.a "${S}"_build/lib/*.a
+# doheader "${S}"_build/inc/*
+
+ # File collisions with sci-biology/ncbi-tools
+ rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
+ mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop2
+
+ echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
+ doenvd "${S}/99${PN}"
+}
+
+pkg_postinst() {
+ einfo 'Please run "source /etc/profile" before using this package in the current shell.'
+ einfo 'Documentation is at http://www.ncbi.nlm.nih.gov/books/NBK7167/'
+}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-09-13 16:51 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-09-13 16:51 UTC (permalink / raw
To: gentoo-commits
commit: 58b3cd84dbafc6fb04a305a29889b3332d9890e5
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 13 16:53:33 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 13 16:53:33 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=58b3cd84
No, the fix-creaders-linking is needed for 12.0.0 as well.
---
sci-biology/ncbi-tools++/ChangeLog | 14 ++++++++++++++
.../files/ncbi-tools++-12.0.0-fix-creaders-linking.patch | 10 ++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 1 +
3 files changed, 25 insertions(+)
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index 711ef6c..2e245b3 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -3,6 +3,20 @@
# $Header: $
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ ncbi-tools++-12.0.0.ebuild,
+ +files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
+ No, the fix-creaders-linking is needed for 12.0.0 as well.
+
+*ncbi-tools++-12.0.0 (13 Sep 2013)
+
+ 13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +ncbi-tools++-12.0.0.ebuild, +files/ncbi-tools++-12.0.0-as-needed.patch,
+ +files/ncbi-tools++-12.0.0-conf-opts.patch:
+ Latest release which needs so far only the two Gentoo patches. Would
+ be better to drop ${PV} from their filename to avoid their duplication
+ I think.
+
+ 13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild,
+files/ncbi-tools++-9.0.0-fix-creaders-linking.patch:
add glew to dependencies inferrred via mesa
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch
new file mode 100644
index 0000000..1380764
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch
@@ -0,0 +1,10 @@
+--- ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (revision 413271)
++++ ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (working copy)
+@@ -4,7 +4,7 @@
+ APP = alnmrg
+ SRC = alnmrg
+ LIB = xalnmgr xobjread ncbi_xloader_blastdb seqdb xobjutil submit blastdb \
+- tables $(OBJMGR_LIBS)
++ tables creaders $(OBJMGR_LIBS)
+
+ LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 8121a79..33ee6fb 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -105,6 +105,7 @@ src_prepare() {
local PATCHES=(
"${FILESDIR}"/${P}-conf-opts.patch
"${FILESDIR}"/${P}-as-needed.patch
+ "${FILESDIR}"/${P}-fix-creaders-linking.patch
)
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-09-13 21:27 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-09-13 21:27 UTC (permalink / raw
To: gentoo-commits
commit: a42ec1c56c4d2691ac3adbff76c5d9ec4f686aa6
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 13 21:28:39 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 13 21:28:39 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a42ec1c5
add ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch; get around a bug in the C++ Toolkit's handling of --without-runpath with certain linker versions by running configure with -Wl,-rpath-link,_build/lib in LDFLAGS (assuming _build is an absolute path; otherwise, prepend /home/mmokrejs/proj/sci/sci-biology/ncbi-tools++/) [from Aaron Ucko].
---
...ndef-reference-to-GenBankReaders_Register_Id1.patch | 10 ++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 18 +++++++++++++++++-
2 files changed, 27 insertions(+), 1 deletion(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
new file mode 100644
index 0000000..be49625
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
@@ -0,0 +1,10 @@
+--- src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib 2013-09-13 21:58:59.420013862 +0200
++++ src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib 2013-09-13 21:59:56.060014010 +0200
+@@ -10,6 +10,6 @@
+ LIB_OR_DLL = both
+
+ # Dependencies for shared library
+-DLL_LIB = ncbi_xreader$(DLL)
++DLL_LIB = ncbi_xreader$(DLL) $(GENBANK_LDEP)
+
+ WATCHERS = vasilche
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
index 33ee6fb..a43dfef 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
@@ -106,6 +106,7 @@ src_prepare() {
"${FILESDIR}"/${P}-conf-opts.patch
"${FILESDIR}"/${P}-as-needed.patch
"${FILESDIR}"/${P}-fix-creaders-linking.patch
+ "${FILESDIR}"/${P}-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
)
epatch ${PATCHES[@]}
@@ -196,6 +197,13 @@ src_configure() {
--with-muparser="${EPREFIX}/usr"
--without-sybase
--with-autodep
+
+# due to \*-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
+# ./configure ... --with-flat-makefile
+# cd .../build
+# make -f Makefile.flat
+#
+ --with-flat-makefile
# --with-3psw=std:netopt favor standard (system) builds of the above pkgs
$(use_with debug)
$(use_with debug max-debug)
@@ -260,6 +268,7 @@ src_configure() {
--srcdir="${S}" \
--prefix="${EPREFIX}/usr" \
--libdir=/usr/lib64 \
+ ${myconf} LDFLAGS="-Wl,-rpath-link,${S}_build/lib -Wl,--no-as-needed" \
${myconf[@]} || die
#--without-debug \
# --with-bin-release \
@@ -280,7 +289,14 @@ src_compile() {
# emake all_r -C GCC*-Release*/build || die
# all_p with compile only selected/required components
# cd "${S}"_build &&\
- emake all_p -C "${S}"_build/build
+
+ # disabling this because we need to take the flat Makefile route
+ # emake all_p -C "${S}"_build/build
+
+ # take the flat Makefile route
+ emake -f Makefile.flat -C "${S}"_build/build
+
+
# emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-09-13 22:05 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-09-13 22:05 UTC (permalink / raw
To: gentoo-commits
commit: db3890c80a85542d3c14254c20a03bf72a2caae0
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 13 22:06:41 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 13 22:06:41 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=db3890c8
more 12.0.0 cleanup, still not working
---
sci-biology/ncbi-tools++/ChangeLog | 20 ++++++++++++++++++++
.../ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch | 19 +++++++++++++++++++
.../ncbi-tools++-12.0.0-fix-creaders-linking.patch | 11 ++++++-----
.../ncbi-tools++-9.0.0-fix-creaders-linking.patch | 4 ++--
sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 3 +++
5 files changed, 50 insertions(+), 7 deletions(-)
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index b737081..b4a234b 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -3,6 +3,26 @@
# $Header: $
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ ncbi-tools++-12.0.0.ebuild,
+ files/ncbi-tools++-9.0.0-fix-creaders-linking.patch,
+ +files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch,
+ files/ncbi-tools++-12.0.0-fix-creaders-linking.patch:
+ Added an upstream patch from:
+
+ Date: Wed, 28 Aug 2013 10:50:29 -0400
+ List cpp <cpp@ncbi.nlm.nih.gov>
+ Subject: Re: [C++] error building ncbi toolkit v.12.0.0
+
+ Fixed line offsets in the ncbi-tools++-12.0.0-fix-creaders-linking.patch
+ file.
+
+ Fixed file path in ncbi-tools++-9.0.0-fix-creaders-linking.patch header.
+
+ The patches copied blindly from ncbi-tools++-9.0.0-r1 under 12.0.0 need to be
+ adjusted still to have correct line numbers. They do NOT apply cleanly at the
+ moment.
+
+ 13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
files/ncbi-tools++-9.0.0-as-needed.patch,
+files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch
new file mode 100644
index 0000000..fede70e
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch
@@ -0,0 +1,19 @@
+--- src/app/agpconvert/Makefile.agpconvert.app.ori 2013-09-13 23:56:22.660032261 +0200
++++ src/app/agpconvert/Makefile.agpconvert.app 2013-09-13 23:57:31.340032441 +0200
+@@ -6,13 +6,12 @@
+ APP = agpconvert
+ SRC = agpconvert
+
+-LIB = xalgoseq xobjedit $(OBJREAD_LIBS) taxon1 xalnmgr xobjutil submit \
+- ncbi_xdbapi_ftds $(FTDS_LIB) tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+-LIBS = $(FTDS_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIB = $(OBJREAD_LIBS) taxon1 xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
++LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
+-REQUIRES = objects algo
++REQUIRES = objects
+
+ WATCHERS = xiangcha
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch
index 1380764..46c2e83 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch
@@ -1,10 +1,11 @@
---- ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (revision 413271)
-+++ ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (working copy)
-@@ -4,7 +4,7 @@
- APP = alnmrg
+--- src/objtools/alnmgr/demo/Makefile.alnmrg.app.ori 2013-09-13 23:51:34.340031508 +0200
++++ src/objtools/alnmgr/demo/Makefile.alnmrg.app 2013-09-13 23:51:36.660031514 +0200
+@@ -5,7 +5,7 @@
SRC = alnmrg
- LIB = xalnmgr xobjread ncbi_xloader_blastdb seqdb xobjutil submit blastdb \
+
+ LIB = xalnmgr $(OBJREAD_LIBS) ncbi_xloader_blastdb seqdb xobjutil submit blastdb \
- tables $(OBJMGR_LIBS)
+ tables creaders $(OBJMGR_LIBS)
LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch
index 1380764..b3b5797 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch
@@ -1,5 +1,5 @@
---- ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (revision 413271)
-+++ ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (working copy)
+--- src/objtools/alnmgr/demo/Makefile.alnmrg.app (revision 413271)
++++ src/objtools/alnmgr/demo/Makefile.alnmrg.app (working copy)
@@ -4,7 +4,7 @@
APP = alnmrg
SRC = alnmrg
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 0549445..7415d8f 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -102,10 +102,13 @@ src_prepare() {
# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
+
+# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
local PATCHES=(
"${FILESDIR}"/${P}-conf-opts.patch
"${FILESDIR}"/${P}-as-needed.patch
"${FILESDIR}"/${P}-fix-creaders-linking.patch
+ "${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
)
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-09-13 22:17 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-09-13 22:17 UTC (permalink / raw
To: gentoo-commits
commit: 51dbd486d1fb08026b4f366e33c2a1395f49b16e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 13 22:18:50 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 13 22:18:50 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=51dbd486
Fix URL to point to a public SVN repository
---
sci-biology/ncbi-tools++/ChangeLog | 11 +++++++++++
.../files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch | 10 ++++++++++
.../files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch | 10 ++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 5 +++--
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 1 +
5 files changed, 35 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index b4a234b..6b670ef 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -3,6 +3,17 @@
# $Header: $
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
+ +files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch,
+ +files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch:
+ Fix URL to point to a public SVN repository (an upstream patch from email
+ list):
+
+ Date: Sun, 28 Jul 2013 22:05:34 -0400
+ CC: <cpp@ncbi.nlm.nih.gov>
+ Subject: Re: [C++] new project startup example needed
+
+ 13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-12.0.0.ebuild,
files/ncbi-tools++-9.0.0-fix-creaders-linking.patch,
+files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch,
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch
new file mode 100644
index 0000000..8bba91f
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch
@@ -0,0 +1,10 @@
+--- scripts/common/new_project.sh (revision 408264)
++++ scripts/common/new_project.sh (working copy)
+@@ -6,7 +6,7 @@
+ svn_revision=`echo '$Revision$' | sed "s%\\$[R]evision: *\\([^$][^$]*\\) \\$.*%\\1%"`
+ def_builddir="$NCBI/c++/Debug/build"
+
+-repository_url='https://svn.ncbi.nlm.nih.gov/repos/toolkit'
++repository_url='http://anonsvn.ncbi.nlm.nih.gov/repos/v1'
+ tmp_app_checkout_dir='tmp_app_sample'
+ stem='sample/app'
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch
new file mode 100644
index 0000000..8bba91f
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch
@@ -0,0 +1,10 @@
+--- scripts/common/new_project.sh (revision 408264)
++++ scripts/common/new_project.sh (working copy)
+@@ -6,7 +6,7 @@
+ svn_revision=`echo '$Revision$' | sed "s%\\$[R]evision: *\\([^$][^$]*\\) \\$.*%\\1%"`
+ def_builddir="$NCBI/c++/Debug/build"
+
+-repository_url='https://svn.ncbi.nlm.nih.gov/repos/toolkit'
++repository_url='http://anonsvn.ncbi.nlm.nih.gov/repos/v1'
+ tmp_app_checkout_dir='tmp_app_sample'
+ stem='sample/app'
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 7415d8f..f217ab3 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -105,9 +105,10 @@ src_prepare() {
# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
local PATCHES=(
- "${FILESDIR}"/${P}-conf-opts.patch
- "${FILESDIR}"/${P}-as-needed.patch
+ #"${FILESDIR}"/${P}-conf-opts.patch
+ #"${FILESDIR}"/${P}-as-needed.patch
"${FILESDIR}"/${P}-fix-creaders-linking.patch
+ "${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
"${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
)
epatch ${PATCHES[@]}
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
index a43dfef..24f92be 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
@@ -106,6 +106,7 @@ src_prepare() {
"${FILESDIR}"/${P}-conf-opts.patch
"${FILESDIR}"/${P}-as-needed.patch
"${FILESDIR}"/${P}-fix-creaders-linking.patch
+ "${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
"${FILESDIR}"/${P}-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
)
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2013-09-14 8:17 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2013-09-14 8:17 UTC (permalink / raw
To: gentoo-commits
commit: 2159e8e3583f47d97226803cd59fa3e715979c01
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Sep 14 08:18:58 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Sep 14 08:18:58 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2159e8e3
Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with line offset changes.
---
sci-biology/ncbi-tools++/ChangeLog | 7 +++++++
.../ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch | 10 ++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 7 +++----
3 files changed, 20 insertions(+), 4 deletions(-)
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index 6b670ef..7f94502 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -2,6 +2,13 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 14 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ ncbi-tools++-9.0.0-r1.ebuild,
+ +files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch:
+ Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with
+ line
+ offset changes.
+
13 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
ncbi-tools++-9.0.0-r1.ebuild, ncbi-tools++-12.0.0.ebuild,
+files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch,
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch
new file mode 100644
index 0000000..95d3f74
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch
@@ -0,0 +1,10 @@
+--- src/connect/ncbi_gnutls.c 2013-09-14 09:49:41.260005353 +0200
++++ src/connect/ncbi_gnutls.c 2013-09-14 09:49:46.950005368 +0200
+@@ -112,7 +112,6 @@
+ 0
+ };
+ static const int kGnuTlsCompPrio[] = {
+- GNUTLS_COMP_LZO,
+ GNUTLS_COMP_ZLIB,
+ GNUTLS_COMP_NULL,
+ 0
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
index 24f92be..1a34f35 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
@@ -24,7 +24,7 @@ IUSE="
debug static-libs static threads pch
test wxwidgets odbc
berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif
- glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
+ glut gnutls hdf5 icu jpeg mesa mysql muparser opengl pcre png python
sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X"
#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
KEYWORDS=""
@@ -38,7 +38,7 @@ DEPEND="
sqlite? ( dev-db/sqlite )
sqlite3? ( dev-db/sqlite:3 )
mysql? ( virtual/mysql )
- gnutls? ( net-libs/gnutls[lzo] )
+ gnutls? ( net-libs/gnutls )
ssl? ( dev-libs/openssl )
fltk? ( x11-libs/fltk )
opengl? ( virtual/opengl )
@@ -64,7 +64,6 @@ DEPEND="
png? ( media-libs/libpng )
tiff? ( media-libs/tiff )
xpm? ( x11-libs/libXpm )
- dev-libs/lzo
app-arch/bzip2
dev-libs/libpcre"
# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
@@ -108,6 +107,7 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-creaders-linking.patch
"${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
"${FILESDIR}"/${P}-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
+ "${FILESDIR}"/${P}-remove-LZO-definition-upstream.patch
)
epatch ${PATCHES[@]}
@@ -215,7 +215,6 @@ src_configure() {
$(use_with prefix runpath "${EPREFIX}/usr/$(get_libdir)/ncbi_cxx")
$(use_with test check)
$(use_with pch)
- $(use_with lzo lzo "${EPREFIX}/usr")
$(use_with pcre pcre "${EPREFIX}/usr")
$(use_with gnutls gnutls "${EPREFIX}/usr")
$(use_with ssl openssl "${EPREFIX}/usr")
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-01-25 16:25 Justin Lecher
0 siblings, 0 replies; 30+ messages in thread
From: Justin Lecher @ 2014-01-25 16:25 UTC (permalink / raw
To: gentoo-commits
commit: 77dbaf65a12dfd3b782f4c6e18c31acb308a16ee
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 25 13:39:33 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 25 16:25:36 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=77dbaf65
Start to work on it again
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
---
.../files/ncbi-tools++-12.0.0-as-needed.patch | 555 +++++++++++----------
.../files/ncbi-tools++-12.0.0-conf-opts.patch | 183 +------
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 14 +-
3 files changed, 303 insertions(+), 449 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
index 8213800..e97c77f 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
@@ -1,171 +1,170 @@
- src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib | 2 ++
- src/algo/align/ngalign/Makefile.xngalign.lib | 2 ++
- src/algo/align/nw/Makefile.xalgoalignnw.lib | 2 ++
- src/algo/align/prosplign/Makefile.prosplign.lib | 2 ++
- src/algo/align/splign/Makefile.xalgoalignsplign.lib | 2 ++
- src/algo/blast/api/Makefile.xblast.lib | 2 +-
- src/algo/blast/blastinput/Makefile.blastinput.lib | 2 +-
- src/algo/blast/core/Makefile.blast.lib | 2 ++
- src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib | 2 ++
- src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib | 2 ++
- src/algo/blast/format/Makefile.xblastformat.lib | 2 +-
- src/algo/blast/gumbel_params/Makefile.gumbelparams.lib | 1 +
- src/algo/cobalt/Makefile.cobalt.lib | 2 ++
- src/algo/dustmask/Makefile.xalgodustmask.lib | 1 +
- src/algo/gnomon/Makefile.gnomon.lib | 2 +-
- src/algo/ms/formats/pepxml/Makefile.pepXML.lib | 2 ++
- src/algo/ms/omssa/Makefile.xomssa.lib | 2 ++
- src/algo/phy_tree/Makefile.xalgophytree.lib | 2 +-
- src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib | 2 ++
- src/algo/segmask/Makefile.xalgosegmask.lib | 1 +
- src/algo/seqqa/Makefile.xalgoseqqa.lib | 2 ++
- src/algo/sequence/Makefile.xalgoseq.lib | 2 ++
- src/algo/structure/bma_refine/Makefile.xbma_refiner.lib | 3 +++
- src/algo/structure/cd_utils/Makefile.xcd_utils.lib | 2 +-
- src/algo/structure/struct_dp/Makefile.xstruct_dp.lib | 2 ++
- src/algo/structure/struct_util/Makefile.xstruct_util.lib | 2 ++
- src/algo/structure/threader/Makefile.xstruct_thread.lib | 2 ++
- src/algo/text/Makefile.xalgotext.lib | 2 ++
- src/algo/volume_merge/Makefile.xalgovmerge.lib | 2 ++
- src/algo/winmask/Makefile.xalgowinmask.lib | 2 ++
- src/cgi/Makefile.cgi.lib | 2 ++
- src/cgi/Makefile.fcgi.lib | 2 ++
- src/connect/Makefile.connssl.lib | 2 ++
- src/connect/Makefile.xconnect.lib | 4 ++++
- src/connect/Makefile.xthrserv.lib | 2 +-
- src/connect/Makefile.xxconnect.lib | 2 ++
- src/connect/services/Makefile.ncbi_xcache_netcache.lib | 2 +-
- src/connect/services/Makefile.xconnserv.lib | 2 +-
- src/connect/test/Makefile.conntest.lib | 2 ++
- src/corelib/Makefile.test_boost.lib | 2 ++
- src/corelib/Makefile.test_mt.lib | 2 ++
- src/corelib/test/Makefile.pbacktest.lib | 2 ++
- src/db/bdb/Makefile.bdb.lib | 4 ++++
- src/db/bdb/Makefile.ncbi_xcache_bdb.lib | 2 +-
- src/db/sqlite/Makefile.sqlitewrapp.lib | 3 +++
- src/dbapi/Makefile.dbapi.lib | 5 +++++
- src/dbapi/driver/Makefile.dbapi_driver.lib | 2 ++
- src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib | 2 ++
- src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib | 2 +-
- src/dbapi/simple/Makefile.sdbapi.lib | 1 +
- src/html/Makefile.html.lib | 2 ++
- src/misc/cgi_redirect/Makefile.cgi_redirect.lib | 2 ++
- src/misc/grid_cgi/Makefile.xgridcgi.lib | 2 ++
- src/objects/access/Makefile.access.lib | 1 +
- src/objects/biblio/Makefile.biblio.lib | 2 ++
- src/objects/biotree/Makefile.biotree.lib | 2 ++
- src/objects/blast/Makefile.blast.lib | 2 ++
- src/objects/blast/Makefile.xnetblastcli.lib | 2 ++
- src/objects/blastdb/Makefile.blastdb.lib | 2 ++
- src/objects/blastxml/Makefile.blastxml.lib | 2 ++
- src/objects/cdd/Makefile.cdd.lib | 2 ++
- src/objects/cn3d/Makefile.cn3d.lib | 2 ++
- src/objects/docsum/Makefile.docsum.lib | 2 ++
- src/objects/entrez2/Makefile.entrez2.lib | 2 ++
- src/objects/entrez2/Makefile.entrez2cli.lib | 2 ++
- src/objects/entrezgene/Makefile.entrezgene.lib | 2 ++
- src/objects/featdef/Makefile.featdef.lib | 2 ++
- src/objects/gbseq/Makefile.gbseq.lib | 2 ++
- src/objects/general/Makefile.general.lib | 2 ++
- src/objects/genomecoll/Makefile.genome_collection.lib | 2 ++
- src/objects/homologene/Makefile.homologene.lib | 2 ++
- src/objects/id1/Makefile.id1.lib | 2 ++
- src/objects/id1/Makefile.id1cli.lib | 2 ++
- src/objects/id2/Makefile.id2.lib | 2 ++
- src/objects/id2/Makefile.id2cli.lib | 2 ++
- src/objects/insdseq/Makefile.insdseq.lib | 2 ++
- src/objects/macro/Makefile.macro.lib | 2 ++
- src/objects/medlars/Makefile.medlars.lib | 2 ++
- src/objects/medline/Makefile.medline.lib | 2 ++
- src/objects/mim/Makefile.mim.lib | 2 ++
- src/objects/mla/Makefile.mla.lib | 2 ++
- src/objects/mla/Makefile.mlacli.lib | 2 ++
- src/objects/mmdb/Makefile.mmdb.lib | 2 ++
- src/objects/ncbimime/Makefile.ncbimime.lib | 2 ++
- src/objects/objprt/Makefile.objprt.lib | 2 ++
- src/objects/omssa/Makefile.omssa.lib | 2 ++
- src/objects/pcassay/Makefile.pcassay.lib | 2 ++
- src/objects/pcsubstance/Makefile.pcsubstance.lib | 2 ++
- src/objects/proj/Makefile.proj.lib | 2 ++
- src/objects/pub/Makefile.pub.lib | 2 ++
- src/objects/pubmed/Makefile.pubmed.lib | 2 ++
- src/objects/remap/Makefile.remap.lib | 2 ++
- src/objects/remap/Makefile.remapcli.lib | 2 ++
- src/objects/scoremat/Makefile.scoremat.lib | 2 ++
- src/objects/seq/Makefile.seq.lib | 2 ++
- src/objects/seqcode/Makefile.seqcode.lib | 2 ++
- src/objects/seqedit/Makefile.seqedit.lib | 1 +
- src/objects/seqset/Makefile.seqset.lib | 1 +
- src/objects/seqsplit/Makefile.seqsplit.lib | 2 ++
- src/objects/seqtest/Makefile.seqtest.lib | 2 ++
- src/objects/submit/Makefile.submit.lib | 1 +
- src/objects/taxon1/Makefile.taxon1.lib | 2 ++
- src/objects/taxon3/Makefile.taxon3.lib | 2 ++
- src/objects/tinyseq/Makefile.tinyseq.lib | 2 ++
- src/objects/valerr/Makefile.valerr.lib | 2 ++
- src/objects/valid/Makefile.valid.lib | 2 ++
- src/objects/variation/Makefile.variation.lib | 1 +
- src/objmgr/split/Makefile.id2_split.lib | 2 +-
- src/objmgr/util/Makefile.util.lib | 1 +
- src/objtools/align/Makefile.xalntool.lib | 2 ++
- src/objtools/align_format/Makefile.align_format.lib | 2 ++
- src/objtools/alnmgr/Makefile.alnmgr.lib | 1 +
- src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib | 2 ++
- src/objtools/blast/gene_info_reader/Makefile.gene_info.lib | 2 ++
- src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib | 2 ++
- src/objtools/blast/seqdb_reader/Makefile.seqdb.lib | 2 ++
- src/objtools/blast/seqdb_writer/Makefile.writedb.lib | 2 ++
- src/objtools/blast/services/Makefile.blast_services.lib | 1 +
- src/objtools/cddalignview/Makefile.cddalignview.lib | 2 ++
- src/objtools/cleanup/Makefile.cleanup.lib | 2 +-
- src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib | 3 +++
- .../data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib | 2 ++
- src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib | 2 ++
- src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib | 2 +-
- src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib | 2 ++
- src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib | 2 ++
- src/objtools/data_loaders/trace/Makefile.xloader_trace.lib | 2 ++
- src/objtools/edit/Makefile.edit.lib | 2 ++
- src/objtools/eutils/api/Makefile.eutils.lib | 2 ++
- src/objtools/eutils/egquery/Makefile.egquery.lib | 2 ++
- src/objtools/eutils/ehistory/Makefile.ehistory.lib | 2 ++
- src/objtools/eutils/einfo/Makefile.einfo.lib | 2 ++
- src/objtools/eutils/elink/Makefile.elink.lib | 2 ++
- src/objtools/eutils/epost/Makefile.epost.lib | 2 ++
- src/objtools/eutils/esearch/Makefile.esearch.lib | 2 ++
- src/objtools/eutils/espell/Makefile.espell.lib | 2 ++
- src/objtools/eutils/esummary/Makefile.esummary.lib | 2 ++
- src/objtools/eutils/linkout/Makefile.linkout.lib | 2 ++
- src/objtools/eutils/uilist/Makefile.uilist.lib | 2 ++
- src/objtools/format/Makefile.xformat.lib | 2 ++
- src/objtools/lds/Makefile.lds.lib | 2 +-
- src/objtools/manip/Makefile.xobjmanip.lib | 2 ++
- src/objtools/readers/Makefile.xobjread.lib | 3 +--
- src/objtools/readers/Makefile.xobjreadex.lib | 2 +-
- src/objtools/seqmasks_io/Makefile.seqmasks_io.lib | 2 +-
- src/objtools/simple/Makefile.xobjsimple.lib | 1 +
- src/objtools/snputil/Makefile.snputil.lib | 2 ++
- src/objtools/validator/Makefile.validator.lib | 2 ++
- src/objtools/writers/Makefile.xobjwrite.lib | 1 +
- src/sample/app/asn/Makefile.sample_asn.lib | 2 ++
- src/sample/app/soap/Makefile.soap_dataobj.lib | 2 ++
- src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib | 2 ++
- src/sample/lib/basic/Makefile.basic_sample_lib.lib | 2 ++
- src/sample/lib/dtd/Makefile.dtd_sample_lib.lib | 2 ++
- src/sample/lib/xsd/Makefile.xsd_sample_lib.lib | 2 ++
- src/serial/Makefile.serial.lib | 2 ++
- src/serial/soap/Makefile.soap.lib | 2 ++
- src/serial/soap/Makefile.soap_server.lib | 2 ++
- src/serial/test/Makefile.we_cpp.lib | 1 +
- src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib | 2 +-
- src/sra/sdk/libs/align/Makefile.align-writer.lib | 2 +-
- src/util/Makefile.util.lib | 2 ++
- src/util/compress/api/Makefile.compress.lib | 2 +-
- src/util/qparse/Makefile.xqueryparse.lib | 2 ++
- src/util/regexp/Makefile.regexp.lib | 2 ++
- src/util/sequtil/Makefile.sequtil.lib | 2 ++
- src/util/xregexp/Makefile.xregexp.lib | 2 +-
- 167 files changed, 307 insertions(+), 23 deletions(-)
+ .../align/contig_assembly/Makefile.xalgocontig_assembly.lib | 2 ++
+ src/algo/align/ngalign/Makefile.xngalign.lib | 2 ++
+ src/algo/align/nw/Makefile.xalgoalignnw.lib | 2 ++
+ src/algo/align/prosplign/Makefile.prosplign.lib | 2 ++
+ src/algo/align/splign/Makefile.xalgoalignsplign.lib | 2 ++
+ src/algo/blast/api/Makefile.xblast.lib | 2 +-
+ src/algo/blast/blastinput/Makefile.blastinput.lib | 2 +-
+ src/algo/blast/core/Makefile.blast.lib | 2 ++
+ src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib | 2 ++
+ .../dbindex_search/Makefile.xalgoblastdbindex_search.lib | 2 ++
+ src/algo/blast/format/Makefile.xblastformat.lib | 2 +-
+ src/algo/blast/gumbel_params/Makefile.gumbelparams.lib | 1 +
+ src/algo/cobalt/Makefile.cobalt.lib | 2 ++
+ src/algo/dustmask/Makefile.xalgodustmask.lib | 1 +
+ src/algo/gnomon/Makefile.gnomon.lib | 2 +-
+ src/algo/ms/formats/pepxml/Makefile.pepXML.lib | 2 ++
+ src/algo/ms/omssa/Makefile.xomssa.lib | 2 ++
+ src/algo/phy_tree/Makefile.xalgophytree.lib | 2 +-
+ src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib | 2 ++
+ src/algo/segmask/Makefile.xalgosegmask.lib | 1 +
+ src/algo/seqqa/Makefile.xalgoseqqa.lib | 2 ++
+ src/algo/sequence/Makefile.xalgoseq.lib | 2 ++
+ src/algo/structure/bma_refine/Makefile.xbma_refiner.lib | 3 +++
+ src/algo/structure/cd_utils/Makefile.xcd_utils.lib | 2 +-
+ src/algo/structure/struct_dp/Makefile.xstruct_dp.lib | 2 ++
+ src/algo/structure/struct_util/Makefile.xstruct_util.lib | 2 ++
+ src/algo/structure/threader/Makefile.xstruct_thread.lib | 2 ++
+ src/algo/text/Makefile.xalgotext.lib | 2 ++
+ src/algo/volume_merge/Makefile.xalgovmerge.lib | 2 ++
+ src/algo/winmask/Makefile.xalgowinmask.lib | 2 ++
+ src/cgi/Makefile.cgi.lib | 2 ++
+ src/cgi/Makefile.fcgi.lib | 2 ++
+ src/connect/Makefile.connssl.lib | 2 ++
+ src/connect/Makefile.xconnect.lib | 4 ++++
+ src/connect/Makefile.xthrserv.lib | 2 +-
+ src/connect/Makefile.xxconnect.lib | 2 ++
+ src/connect/services/Makefile.ncbi_xcache_netcache.lib | 2 +-
+ src/connect/services/Makefile.xconnserv.lib | 2 +-
+ src/corelib/Makefile.test_boost.lib | 2 ++
+ src/corelib/Makefile.test_mt.lib | 2 ++
+ src/corelib/test/Makefile.pbacktest.lib | 2 ++
+ src/db/bdb/Makefile.bdb.lib | 4 ++++
+ src/db/bdb/Makefile.ncbi_xcache_bdb.lib | 2 +-
+ src/db/sqlite/Makefile.sqlitewrapp.lib | 3 +++
+ src/dbapi/Makefile.dbapi.lib | 5 +++++
+ src/dbapi/driver/Makefile.dbapi_driver.lib | 2 ++
+ src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib | 2 ++
+ src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib | 2 +-
+ src/dbapi/simple/Makefile.sdbapi.lib | 11 +++++++++++
+ src/html/Makefile.html.lib | 2 ++
+ src/misc/cgi_redirect/Makefile.cgi_redirect.lib | 2 ++
+ src/misc/grid_cgi/Makefile.xgridcgi.lib | 2 ++
+ src/objects/access/Makefile.access.lib | 1 +
+ src/objects/biblio/Makefile.biblio.lib | 2 ++
+ src/objects/biotree/Makefile.biotree.lib | 2 ++
+ src/objects/blast/Makefile.blast.lib | 2 ++
+ src/objects/blast/Makefile.xnetblastcli.lib | 2 ++
+ src/objects/blastdb/Makefile.blastdb.lib | 2 ++
+ src/objects/blastxml/Makefile.blastxml.lib | 2 ++
+ src/objects/cdd/Makefile.cdd.lib | 2 ++
+ src/objects/cn3d/Makefile.cn3d.lib | 2 ++
+ src/objects/docsum/Makefile.docsum.lib | 2 ++
+ src/objects/entrez2/Makefile.entrez2.lib | 2 ++
+ src/objects/entrez2/Makefile.entrez2cli.lib | 2 ++
+ src/objects/entrezgene/Makefile.entrezgene.lib | 2 ++
+ src/objects/featdef/Makefile.featdef.lib | 2 ++
+ src/objects/gbseq/Makefile.gbseq.lib | 2 ++
+ src/objects/general/Makefile.general.lib | 2 ++
+ src/objects/genomecoll/Makefile.genome_collection.lib | 2 ++
+ src/objects/homologene/Makefile.homologene.lib | 2 ++
+ src/objects/id1/Makefile.id1.lib | 2 ++
+ src/objects/id1/Makefile.id1cli.lib | 2 ++
+ src/objects/id2/Makefile.id2.lib | 2 ++
+ src/objects/id2/Makefile.id2cli.lib | 2 ++
+ src/objects/insdseq/Makefile.insdseq.lib | 2 ++
+ src/objects/macro/Makefile.macro.lib | 2 ++
+ src/objects/medlars/Makefile.medlars.lib | 2 ++
+ src/objects/medline/Makefile.medline.lib | 2 ++
+ src/objects/mim/Makefile.mim.lib | 2 ++
+ src/objects/mla/Makefile.mla.lib | 2 ++
+ src/objects/mla/Makefile.mlacli.lib | 2 ++
+ src/objects/mmdb/Makefile.mmdb.lib | 2 ++
+ src/objects/ncbimime/Makefile.ncbimime.lib | 2 ++
+ src/objects/objprt/Makefile.objprt.lib | 2 ++
+ src/objects/omssa/Makefile.omssa.lib | 2 ++
+ src/objects/pcassay/Makefile.pcassay.lib | 2 ++
+ src/objects/pcsubstance/Makefile.pcsubstance.lib | 2 ++
+ src/objects/proj/Makefile.proj.lib | 2 ++
+ src/objects/pub/Makefile.pub.lib | 2 ++
+ src/objects/pubmed/Makefile.pubmed.lib | 2 ++
+ src/objects/remap/Makefile.remap.lib | 2 ++
+ src/objects/remap/Makefile.remapcli.lib | 2 ++
+ src/objects/scoremat/Makefile.scoremat.lib | 2 ++
+ src/objects/seq/Makefile.seq.lib | 2 ++
+ src/objects/seqcode/Makefile.seqcode.lib | 2 ++
+ src/objects/seqedit/Makefile.seqedit.lib | 1 +
+ src/objects/seqset/Makefile.seqset.lib | 1 +
+ src/objects/seqsplit/Makefile.seqsplit.lib | 2 ++
+ src/objects/seqtest/Makefile.seqtest.lib | 2 ++
+ src/objects/submit/Makefile.submit.lib | 1 +
+ src/objects/taxon1/Makefile.taxon1.lib | 2 ++
+ src/objects/taxon3/Makefile.taxon3.lib | 2 ++
+ src/objects/tinyseq/Makefile.tinyseq.lib | 2 ++
+ src/objects/valerr/Makefile.valerr.lib | 2 ++
+ src/objects/valid/Makefile.valid.lib | 2 ++
+ src/objects/variation/Makefile.variation.lib | 1 +
+ src/objmgr/split/Makefile.id2_split.lib | 2 +-
+ src/objmgr/util/Makefile.util.lib | 1 +
+ src/objtools/align/Makefile.xalntool.lib | 2 ++
+ src/objtools/align_format/Makefile.align_format.lib | 2 ++
+ src/objtools/alnmgr/Makefile.alnmgr.lib | 1 +
+ src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib | 2 ++
+ src/objtools/blast/gene_info_reader/Makefile.gene_info.lib | 2 ++
+ .../blast/gene_info_writer/Makefile.gene_info_writer.lib | 2 ++
+ src/objtools/blast/seqdb_reader/Makefile.seqdb.lib | 2 ++
+ src/objtools/blast/seqdb_writer/Makefile.writedb.lib | 2 ++
+ src/objtools/blast/services/Makefile.blast_services.lib | 1 +
+ src/objtools/cddalignview/Makefile.cddalignview.lib | 2 ++
+ src/objtools/cleanup/Makefile.cleanup.lib | 2 +-
+ .../data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib | 3 +++
+ .../blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib | 2 ++
+ src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib | 2 ++
+ src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib | 2 +-
+ .../data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib | 2 ++
+ .../data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib | 2 ++
+ src/objtools/data_loaders/trace/Makefile.xloader_trace.lib | 2 ++
+ src/objtools/edit/Makefile.edit.lib | 2 ++
+ src/objtools/eutils/api/Makefile.eutils.lib | 2 ++
+ src/objtools/eutils/egquery/Makefile.egquery.lib | 2 ++
+ src/objtools/eutils/ehistory/Makefile.ehistory.lib | 2 ++
+ src/objtools/eutils/einfo/Makefile.einfo.lib | 2 ++
+ src/objtools/eutils/elink/Makefile.elink.lib | 2 ++
+ src/objtools/eutils/epost/Makefile.epost.lib | 2 ++
+ src/objtools/eutils/esearch/Makefile.esearch.lib | 2 ++
+ src/objtools/eutils/espell/Makefile.espell.lib | 2 ++
+ src/objtools/eutils/esummary/Makefile.esummary.lib | 2 ++
+ src/objtools/eutils/linkout/Makefile.linkout.lib | 2 ++
+ src/objtools/eutils/uilist/Makefile.uilist.lib | 2 ++
+ src/objtools/format/Makefile.xformat.lib | 2 ++
+ src/objtools/lds/Makefile.lds.lib | 2 +-
+ src/objtools/manip/Makefile.xobjmanip.lib | 2 ++
+ src/objtools/readers/Makefile.xobjread.lib | 3 +--
+ src/objtools/readers/Makefile.xobjreadex.lib | 2 +-
+ src/objtools/seqmasks_io/Makefile.seqmasks_io.lib | 2 +-
+ src/objtools/simple/Makefile.xobjsimple.lib | 1 +
+ src/objtools/snputil/Makefile.snputil.lib | 2 ++
+ src/objtools/validator/Makefile.validator.lib | 2 ++
+ src/objtools/writers/Makefile.xobjwrite.lib | 1 +
+ src/sample/app/asn/Makefile.sample_asn.lib | 2 ++
+ src/sample/app/soap/Makefile.soap_dataobj.lib | 2 ++
+ src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib | 2 ++
+ src/sample/lib/basic/Makefile.basic_sample_lib.lib | 2 ++
+ src/sample/lib/dtd/Makefile.dtd_sample_lib.lib | 2 ++
+ src/sample/lib/xsd/Makefile.xsd_sample_lib.lib | 2 ++
+ src/serial/Makefile.serial.lib | 2 ++
+ src/serial/soap/Makefile.soap.lib | 2 ++
+ src/serial/soap/Makefile.soap_server.lib | 2 ++
+ src/serial/test/Makefile.we_cpp.lib | 1 +
+ src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib | 2 +-
+ src/sra/sdk/libs/align/Makefile.align-writer.lib | 2 +-
+ src/util/Makefile.util.lib | 2 ++
+ src/util/compress/api/Makefile.compress.lib | 2 +-
+ src/util/qparse/Makefile.xqueryparse.lib | 2 ++
+ src/util/regexp/Makefile.regexp.lib | 2 ++
+ src/util/sequtil/Makefile.sequtil.lib | 2 ++
+ src/util/xregexp/Makefile.xregexp.lib | 2 +-
+ 166 files changed, 315 insertions(+), 23 deletions(-)
diff --git a/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib b/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
index c8851d8..35ae629 100644
@@ -208,7 +207,7 @@ index 248ee37..73143ad 100644
+
+DLL_LIB = align_format blastinput dbapi_driver general igblast seq xalgoalignutil xalnmgr xncbi xobjmgr xobjutil xser # axf
diff --git a/src/algo/align/splign/Makefile.xalgoalignsplign.lib b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
-index d67680b..3d56789 100644
+index 077f111..dff1877 100644
--- a/src/algo/align/splign/Makefile.xalgoalignsplign.lib
+++ b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
@@ -10,3 +10,5 @@ LIB = xalgoalignsplign
@@ -218,28 +217,28 @@ index d67680b..3d56789 100644
+
+DLL_LIB = access align_format blastinput dbapi_driver gene_info general seq seqdb xalgoalignnw xalgoalignutil xalgoseq xblast xncbi xobjmgr xobjutil xser xutil # axf prosplign
diff --git a/src/algo/blast/api/Makefile.xblast.lib b/src/algo/blast/api/Makefile.xblast.lib
-index 073973b..c6a4c2c 100644
+index 4e424b3..8708bf0 100644
--- a/src/algo/blast/api/Makefile.xblast.lib
+++ b/src/algo/blast/api/Makefile.xblast.lib
-@@ -78,7 +78,7 @@ SRC = $(SRC_C:%=.core_%) $(SRC_CXX)
-
- LIB = xblast
-
--DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS)
-+DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS) seqdb xnetblast xnetblastcli xalgoblastdbindex xalgowinmask tables composition_adjustment xobjread
+@@ -81,7 +81,7 @@ LIB = xblast
+ DLL_LIB = xalgoblastdbindex composition_adjustment xalgowinmask \
+ xalgodustmask seqmasks_io seqdb $(OBJREAD_LIBS) xobjutil \
+ blastdb xnetblastcli xnetblast scoremat xconnect tables \
+- $(SOBJMGR_LIBS)
++ $(SOBJMGR_LIBS) seqdb xnetblast xnetblastcli xalgoblastdbindex xalgowinmask tables composition_adjustment xobjread
CFLAGS = $(FAST_CFLAGS)
- # Strict gcc flags
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
diff --git a/src/algo/blast/blastinput/Makefile.blastinput.lib b/src/algo/blast/blastinput/Makefile.blastinput.lib
-index bfb315c..2cd809a 100644
+index 372dba1..d5986c7 100644
--- a/src/algo/blast/blastinput/Makefile.blastinput.lib
+++ b/src/algo/blast/blastinput/Makefile.blastinput.lib
@@ -24,7 +24,7 @@ SRC = $(SRC_CXX)
LIB = blastinput
--DLL_LIB = xblast $(OBJMGR_LIBS)
-+DLL_LIB = seqdb ncbi_xloader_blastdb ncbi_xloader_blastdb_rmt align_format xalnmgr xblast xcgi xobjread xobjutil ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2 xalnmgr xcgi
+-DLL_LIB = xblast align_format ncbi_xloader_blastdb_rmt ncbi_xloader_blastdb seqdb $(OBJREAD_LIBS) $(OBJMGR_LIBS) xutil
++DLL_LIB = seqdb ncbi_xloader_blastdb ncbi_xloader_blastdb_rmt align_format xalnmgr xblast align_format ncbi_xloader_blastdb_rmt ncbi_xloader_blastdb seqdb $(OBJREAD_LIBS) xcgi xobjread xobjutil ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2 xalnmgr xcgi xutil
# should be redundant, given the above :-/
ASN_DEP = seqset xnetblast
@@ -274,15 +273,15 @@ index e64f111..475f4a1 100644
+
+DLL_LIB = dbapi_driver xncbi xobjmgr # axf
diff --git a/src/algo/blast/format/Makefile.xblastformat.lib b/src/algo/blast/format/Makefile.xblastformat.lib
-index f7da067..9920332 100644
+index 3058881..7a6d07d 100644
--- a/src/algo/blast/format/Makefile.xblastformat.lib
+++ b/src/algo/blast/format/Makefile.xblastformat.lib
@@ -7,6 +7,6 @@ SRC = blastfmtutil blastxml_format blast_format data4xmlformat build_archive vec
- CPPFLAGS = $(ORIG_CPPFLAGS)
+ CPPFLAGS = -DNCBI_MODULE=BLASTFORMAT $(ORIG_CPPFLAGS)
--DLL_LIB = blastxml xhtml xcgi
-+DLL_LIB = blastxml xhtml xcgi align_format general scoremat seq seqdb xalnmgr xblast xnetblast xobjmgr xobjutil blast_services ncbi_xloader_genbank xcgi # cobalt
+-DLL_LIB = align_format blastxml xhtml xcgi
++DLL_LIB = align_format blastxml xhtml xcgi align_format general scoremat seq seqdb xalnmgr xblast xnetblast xobjmgr xobjutil blast_services ncbi_xloader_genbank xcgi # cobalt
WATCHERS = jianye zaretska madden camacho fongah2
diff --git a/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib b/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
@@ -314,12 +313,12 @@ index 84e2568..3632356 100644
+DLL_LIB = dbapi_driver seq xncbi xobjmgr # axf
diff --git a/src/algo/gnomon/Makefile.gnomon.lib b/src/algo/gnomon/Makefile.gnomon.lib
-index af363c0..3235647 100644
+index 2a06ee8..d73cd8f 100644
--- a/src/algo/gnomon/Makefile.gnomon.lib
+++ b/src/algo/gnomon/Makefile.gnomon.lib
@@ -6,7 +6,7 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) \
gnomon_engine gnomon_objmgr score gnomon_model parse hmm gnomon_seq asn1 chainer id_handler \
- annot select_alignments_alt
+ annot select_alignments_alt aligncollapser
LIB = xalgognomon
-DLL_LIB = xobjutil $(SOBJMGR_LIBS)
+DLL_LIB = xobjutil $(SOBJMGR_LIBS) xalgoseq
@@ -347,10 +346,10 @@ index 872b92e..78261eb 100644
+
+DLL_LIB = xutil omssa pepXML xcompress xconnect seqdb xblast xregexp
diff --git a/src/algo/phy_tree/Makefile.xalgophytree.lib b/src/algo/phy_tree/Makefile.xalgophytree.lib
-index 5964ef4..8163366 100644
+index c7e2778..51ebe9d 100644
--- a/src/algo/phy_tree/Makefile.xalgophytree.lib
+++ b/src/algo/phy_tree/Makefile.xalgophytree.lib
-@@ -6,7 +6,7 @@ ASN_DEP = biotree
+@@ -6,7 +6,7 @@ ASN_DEP = biotree seqset
SRC = bio_tree phy_node dist_methods lex.newick newick.tab tree_to_dist_mat phytree_calc
LIB = xalgophytree
@@ -389,7 +388,7 @@ index b1bea47..a0e5b1b 100644
+
+DLL_LIB = access align_format dbapi_driver entrez2cli gene_info general seq seqtest xalgognomon xalgoseq xalnmgr xncbi xobjmgr xobjutil xser # axf
diff --git a/src/algo/sequence/Makefile.xalgoseq.lib b/src/algo/sequence/Makefile.xalgoseq.lib
-index 51f4cd7..724e939 100644
+index 70d42a1..ab7b80f 100644
--- a/src/algo/sequence/Makefile.xalgoseq.lib
+++ b/src/algo/sequence/Makefile.xalgoseq.lib
@@ -13,3 +13,5 @@ LDFLAGS = $(FAST_LDFLAGS)
@@ -452,13 +451,13 @@ index c06a2c0..9f1ff25 100644
+
+DLL_LIB = xutil
diff --git a/src/algo/text/Makefile.xalgotext.lib b/src/algo/text/Makefile.xalgotext.lib
-index 81ba0e6..f25073e 100644
+index 7c0b48a..ba055ad 100644
--- a/src/algo/text/Makefile.xalgotext.lib
+++ b/src/algo/text/Makefile.xalgotext.lib
-@@ -10,3 +10,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
+@@ -8,3 +8,5 @@ SRC = text_util vector_serial
- ASN_DEP = general
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
+DLL_LIB = align_format blastinput ncbi_xcache_bdb xcompress xncbi xutil # axf
diff --git a/src/algo/volume_merge/Makefile.xalgovmerge.lib b/src/algo/volume_merge/Makefile.xalgovmerge.lib
@@ -482,17 +481,17 @@ index afaf676..ad2c1fe 100644
+DLL_LIB = seqmasks_io xobjread xobjutil
+
diff --git a/src/cgi/Makefile.cgi.lib b/src/cgi/Makefile.cgi.lib
-index a990390..edf40aa 100644
+index fb543d7..10762e4 100644
--- a/src/cgi/Makefile.cgi.lib
+++ b/src/cgi/Makefile.cgi.lib
-@@ -11,3 +11,5 @@ LIB = xcgi
+@@ -12,3 +12,5 @@ LIB = xcgi
CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
WATCHERS = vakatov
+
+DLL_LIB = xncbi xutil
diff --git a/src/cgi/Makefile.fcgi.lib b/src/cgi/Makefile.fcgi.lib
-index 2569b41..6b85780 100644
+index f68060b..c87d8e9 100644
--- a/src/cgi/Makefile.fcgi.lib
+++ b/src/cgi/Makefile.fcgi.lib
@@ -12,3 +12,5 @@ LIB = xfcgi
@@ -530,7 +529,7 @@ index 473bb0b..88dae10 100644
+
+DLL_LIB = xncbi xutil
diff --git a/src/connect/Makefile.xthrserv.lib b/src/connect/Makefile.xthrserv.lib
-index 1e5b857..0833a78 100644
+index c7060d2..0dd00a0 100644
--- a/src/connect/Makefile.xthrserv.lib
+++ b/src/connect/Makefile.xthrserv.lib
@@ -4,6 +4,6 @@ SRC = threaded_server server server_monitor connection_pool
@@ -540,7 +539,7 @@ index 1e5b857..0833a78 100644
-DLL_LIB = xutil xconnect
+DLL_LIB = xncbi xutil xconnect
- WATCHERS = ivanovp
+ WATCHERS = vakatov
diff --git a/src/connect/Makefile.xxconnect.lib b/src/connect/Makefile.xxconnect.lib
index d7ba751..8e27819 100644
--- a/src/connect/Makefile.xxconnect.lib
@@ -565,7 +564,7 @@ index 606f4f1..e6cfdac 100644
CPPFLAGS = $(ORIG_CPPFLAGS)
LIBS = $(ORIG_LIBS)
diff --git a/src/connect/services/Makefile.xconnserv.lib b/src/connect/services/Makefile.xconnserv.lib
-index 4b8f21f..04fcbf8 100644
+index 77382f2..5d124f2 100644
--- a/src/connect/services/Makefile.xconnserv.lib
+++ b/src/connect/services/Makefile.xconnserv.lib
@@ -15,6 +15,6 @@ LIB = xconnserv
@@ -576,23 +575,13 @@ index 4b8f21f..04fcbf8 100644
+DLL_LIB = xthrserv xconnect xutil xncbi
WATCHERS = kazimird
-diff --git a/src/connect/test/Makefile.conntest.lib b/src/connect/test/Makefile.conntest.lib
-index 58a2fa5..3d9876c 100644
---- a/src/connect/test/Makefile.conntest.lib
-+++ b/src/connect/test/Makefile.conntest.lib
-@@ -4,3 +4,5 @@ SRC = ncbi_conntest
- LIB = xconntest
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi xutil connect
diff --git a/src/corelib/Makefile.test_boost.lib b/src/corelib/Makefile.test_boost.lib
-index e8fa174..f90441d 100644
+index 9d34c45..5678a38 100644
--- a/src/corelib/Makefile.test_boost.lib
+++ b/src/corelib/Makefile.test_boost.lib
@@ -9,3 +9,5 @@ REQUIRES = Boost.Test.Included
- WATCHERS = ivanovp
+ WATCHERS = vakatov
PROJ_TAG = test
+
+DLL_LIB = xncbi
@@ -642,71 +631,84 @@ index 7e97a26..8f54efc 100644
CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
LIBS = $(BERKELEYDB_LIBS) $(ORIG_LIBS)
diff --git a/src/db/sqlite/Makefile.sqlitewrapp.lib b/src/db/sqlite/Makefile.sqlitewrapp.lib
-index cecfd16..c01668b 100644
+index 77c9bf5..2c136d1 100644
--- a/src/db/sqlite/Makefile.sqlitewrapp.lib
+++ b/src/db/sqlite/Makefile.sqlitewrapp.lib
@@ -8,3 +8,6 @@ CPPFLAGS= $(ORIG_CPPFLAGS) $(SQLITE3_INCLUDE)
REQUIRES = SQLITE3
- WATCHERS = ivanovp
+ WATCHERS = vakatov
+
+DLL_LIB = xncbi xutil
+LIBS = $(SQLITE3_LIBS)
diff --git a/src/dbapi/Makefile.dbapi.lib b/src/dbapi/Makefile.dbapi.lib
-index 6e3ad4c..e3d6a49 100644
+index 9e45b7a..b3fbb74 100644
--- a/src/dbapi/Makefile.dbapi.lib
+++ b/src/dbapi/Makefile.dbapi.lib
@@ -10,3 +10,8 @@ LIB = dbapi
CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
- WATCHERS = ivanovp
+ WATCHERS = ucko
+
+#ASN_DEP = driver dbapi_driver
+
+DLL_LIB = xncbi xutil # dbapi_driver$(DLL)
+LIBS = $(PYTHON_LIBS)
diff --git a/src/dbapi/driver/Makefile.dbapi_driver.lib b/src/dbapi/driver/Makefile.dbapi_driver.lib
-index dfeac5a..bc113ed 100644
+index 779ea8f..fd6306b 100644
--- a/src/dbapi/driver/Makefile.dbapi_driver.lib
+++ b/src/dbapi/driver/Makefile.dbapi_driver.lib
@@ -22,3 +22,5 @@ CXXFLAGS_darwin = -fno-inline
CXXFLAGS = $(ORIG_CXXFLAGS) $(CXXFLAGS_$(OSTYPE))
- WATCHERS = ivanovp
+ WATCHERS = ucko
+
+DLL_LIB = xncbi xutil
diff --git a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-index 941ccd6..f1f872c 100644
+index 672570d..817f07a 100644
--- a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
+++ b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
@@ -6,3 +6,5 @@ LIB = dbapi_sample_base
CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
- WATCHERS = ivanovp
+ WATCHERS = ucko
+
+DLL_LIB = xncbi xutil dbapi_driver
diff --git a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-index ebe08c4..86ecda6 100644
+index 2cfe73f..6ce8c66 100644
--- a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
+++ b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-@@ -11,7 +11,7 @@ LIB_OR_DLL = dll
+@@ -11,6 +11,6 @@ LIB_OR_DLL = dll
# Dependencies for shared library
DLL_LIB = dbapi dbapi_driver$(DLL) $(XCONNEXT) xconnect xutil xncbi
-LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS)
+LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS) $(PYTHON_LIBS)
- # Drop other flags to build with full dependencies under ICC.
- DLL_LDFLAGS = $(DLL_UNDEF_FLAGS)
+ WATCHERS = ucko
diff --git a/src/dbapi/simple/Makefile.sdbapi.lib b/src/dbapi/simple/Makefile.sdbapi.lib
-index 603fd1e..0d06323 100644
+index 75be96d..bc87bc1 100644
--- a/src/dbapi/simple/Makefile.sdbapi.lib
+++ b/src/dbapi/simple/Makefile.sdbapi.lib
-@@ -5,3 +5,4 @@ LIB = sdbapi
+@@ -1,3 +1,4 @@
++<<<<<<<
+ # $Id: Makefile.sdbapi.lib 370257 2012-07-27 14:56:37Z ivanovp $
+
+ SRC = sdbapi
+@@ -5,3 +6,13 @@ LIB = sdbapi
- WATCHERS = ivanovp
+ WATCHERS = ucko
++|||||||
++
++WATCHERS = ivanovp
++
++=======
++
++WATCHERS = ivanovp
++
+DLL_LIB = xncbi xutil dbapi_driver ncbi_xdbapi_ftds xconnect xser bdb xconnserv
++>>>>>>>
diff --git a/src/html/Makefile.html.lib b/src/html/Makefile.html.lib
index a57c1e3..0005299 100644
--- a/src/html/Makefile.html.lib
@@ -755,11 +757,11 @@ index 2c7d491..cb54ba6 100644
+
+DLL_LIB = general xser xncbi xutil
diff --git a/src/objects/biotree/Makefile.biotree.lib b/src/objects/biotree/Makefile.biotree.lib
-index 8019285..2c689ae 100644
+index 94b7e3d..e8f047a 100644
--- a/src/objects/biotree/Makefile.biotree.lib
+++ b/src/objects/biotree/Makefile.biotree.lib
-@@ -1,3 +1,5 @@
- ASN_DEP = seq seqset
+@@ -2,3 +2,5 @@
+
LIB = biotree
SRC = biotree__ biotree___
+
@@ -775,7 +777,7 @@ index 0dd0fa3..d50f29f 100644
+
+DLL_LIB = xncbi xutil xser seq seqset scoremat
diff --git a/src/objects/blast/Makefile.xnetblastcli.lib b/src/objects/blast/Makefile.xnetblastcli.lib
-index 96325c4..5a72805 100644
+index 96325c4..d30f8ee 100644
--- a/src/objects/blast/Makefile.xnetblastcli.lib
+++ b/src/objects/blast/Makefile.xnetblastcli.lib
@@ -2,3 +2,5 @@ ASN_DEP = xnetblast
@@ -1187,10 +1189,10 @@ index 74798f8..c74707c 100644
SRC = submit__ submit___
+DLL_LIB = xser xncbi seq biblio seqset
diff --git a/src/objects/taxon1/Makefile.taxon1.lib b/src/objects/taxon1/Makefile.taxon1.lib
-index 61658ab..f46db75 100644
+index f0f9c66..35d6a61 100644
--- a/src/objects/taxon1/Makefile.taxon1.lib
+++ b/src/objects/taxon1/Makefile.taxon1.lib
-@@ -3,3 +3,5 @@ LIB = taxon1
+@@ -4,3 +4,5 @@ LIB = taxon1
SRC = taxon1__ taxon1___ taxon1 cache utils ctreecont
WATCHERS = domrach
@@ -1275,13 +1277,13 @@ index cb9846d..9c2a8f9 100644
+
+DLL_LIB = access dbapi_driver general seq xhtml xncbi xobjmgr xobjutil xser # align_format axf blastinput
diff --git a/src/objtools/align_format/Makefile.align_format.lib b/src/objtools/align_format/Makefile.align_format.lib
-index 4b3e59e..c67c352 100644
+index 1ec5bf0..6da8514 100644
--- a/src/objtools/align_format/Makefile.align_format.lib
+++ b/src/objtools/align_format/Makefile.align_format.lib
-@@ -18,3 +18,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
+@@ -20,3 +20,5 @@ CPPFLAGS = -DNCBI_MODULE=BLASTFORMAT $(ORIG_CPPFLAGS)
# LIB_OR_DLL = dll
- WATCHERS = zaretska jianye madden camacho
+ WATCHERS = zaretska jianye madden camacho fongah2
+
+DLL_LIB = seqdb blastdb xser xhtml gene_info xnetblast blast_services ncbi_xloader_genbank xalnmgr xcgi xobjread xobjutil
diff --git a/src/objtools/alnmgr/Makefile.alnmgr.lib b/src/objtools/alnmgr/Makefile.alnmgr.lib
@@ -1294,60 +1296,60 @@ index e32c351..41355ff 100644
+DLL_LIB = tables dbapi_driver ncbi_xcache_bdb seq seqset sequtil xncbi xobjmgr xobjutil xser # align_format axf
diff --git a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-index d8177ed..aa4d8e4 100644
+index 62f01fd..f7768e0 100644
--- a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
+++ b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-@@ -18,3 +18,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
+@@ -17,3 +17,5 @@ CPPFLAGS = -DNCBI_MODULE=BLASTDB $(ORIG_CPPFLAGS)
# CXXFLAGS = $(FAST_CXXFLAGS)
#
# LIB_OR_DLL = dll
+
+DLL_LIB = xncbi xser xobjutil seq seqdb
diff --git a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-index bf5fd1b..c32aca4 100644
+index 3a92e3e..79a75b9 100644
--- a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
+++ b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-@@ -4,3 +4,5 @@ WATCHERS = camacho
-
+@@ -5,3 +5,5 @@ WATCHERS = camacho
+ CPPFLAGS = -DNCBI_MODULE=GENEINFO $(ORIG_CPPFLAGS)
LIB = gene_info
SRC = gene_info gene_info_reader file_utils
+
+DLL_LIB = xncbi
diff --git a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-index b0a00dc..37569f8 100644
+index a067ae2..e1a6d3e 100644
--- a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
+++ b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-@@ -6,3 +6,5 @@ LIB = gene_info_writer
+@@ -7,3 +7,5 @@ LIB = gene_info_writer
SRC = gene_info_writer
ASN_DEP = blastdb
+
+DLL_LIB = gene_info xncbi seqdb
diff --git a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-index 25898aa..0b0e478 100644
+index 9c13307..65822c6 100644
--- a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
+++ b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-@@ -29,3 +29,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
+@@ -30,3 +30,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
LDFLAGS = $(FAST_LDFLAGS)
WATCHERS = maning camacho
+
+DLL_LIB = blastdb xobjmgr
diff --git a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-index 7b9c8e1..6dbdbaa 100644
+index 3b15ed6..77f5202 100644
--- a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
+++ b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-@@ -13,3 +13,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
+@@ -14,3 +14,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
LDFLAGS = $(FAST_LDFLAGS)
- WATCHERS = maning camacho
+ WATCHERS = maning camacho fongah2
+
+DLL_LIB = seq blastdb seqdb xobjmgr xobjread xutil
diff --git a/src/objtools/blast/services/Makefile.blast_services.lib b/src/objtools/blast/services/Makefile.blast_services.lib
-index 10a878c..7a70b22 100644
+index ceba356..d2bd900 100644
--- a/src/objtools/blast/services/Makefile.blast_services.lib
+++ b/src/objtools/blast/services/Makefile.blast_services.lib
-@@ -12,3 +12,4 @@ CFLAGS = $(FAST_CFLAGS)
+@@ -13,3 +13,4 @@ CPPFLAGS = -DNCBI_MODULE=NETBLAST $(ORIG_CPPFLAGS)
CXXFLAGS = $(FAST_CXXFLAGS)
LDFLAGS = $(FAST_LDFLAGS)
@@ -1363,10 +1365,10 @@ index 8e39baa..f4d3a35 100644
+
+DLL_LIB = cdd dbapi_driver general ncbimime seq seqset xncbi xser # align_format axf ncbi_xloader_bam
diff --git a/src/objtools/cleanup/Makefile.cleanup.lib b/src/objtools/cleanup/Makefile.cleanup.lib
-index 663d755..ad7b3cf 100644
+index 291948f..adecac0 100644
--- a/src/objtools/cleanup/Makefile.cleanup.lib
+++ b/src/objtools/cleanup/Makefile.cleanup.lib
-@@ -10,7 +10,7 @@ SRC = autogenerated_cleanup cleanup \
+@@ -10,7 +10,7 @@ SRC = autogenerated_cleanup autogenerated_extended_cleanup cleanup \
cleanup_utils \
newcleanupp
@@ -1376,10 +1378,10 @@ index 663d755..ad7b3cf 100644
LIBS = $(PCRE_LIBS)
diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-index 80af69f..704ed7a 100644
+index 4fb6117..934a3b6 100644
--- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-@@ -6,3 +6,6 @@ SRC = bdbloader cached_sequence local_blastdb_adapter
+@@ -8,3 +8,6 @@ CPPFLAGS = -DNCBI_MODULE=BLASTDB $(ORIG_CPPFLAGS)
ASN_DEP = blastdb seqset
WATCHERS = camacho
@@ -1387,10 +1389,10 @@ index 80af69f..704ed7a 100644
+DLL_LIB = seqdb
+
diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-index 80abb48..2ddec92 100644
+index 243467f..3a2115c 100644
--- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-@@ -6,3 +6,5 @@ SRC = bdbloader_rmt remote_blastdb_adapter
+@@ -8,3 +8,5 @@ CPPFLAGS = -DNCBI_MODULE=BLASTDB $(ORIG_CPPFLAGS)
ASN_DEP = blastdb xnetblast
WATCHERS = camacho
@@ -1407,15 +1409,16 @@ index a51042b..fa92fc9 100644
+
+DLL_LIB = dbapi_driver general seq seqset xconnect xncbi xobjmgr xser # align_format axf ncbi_xloader_bam
diff --git a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-index f2b2b49..864e4b1 100644
+index f3bb947..90d3af9 100644
--- a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
+++ b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-@@ -12,6 +12,6 @@ LIB = ncbi_xreader
+@@ -12,7 +12,7 @@ LIB = ncbi_xreader
LIB_OR_DLL = both
# Dependencies for shared library
-DLL_LIB =
+DLL_LIB = xcompress xobjmgr seqsplit xconnect id1 id2
+ DLL_DLIB = $(GENBANK_READER_LDEP)
WATCHERS = vasilche
diff --git a/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib b/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
@@ -1569,11 +1572,11 @@ index b49c3c5..2ee63f0 100644
+
+DLL_LIB = access dbapi_driver xncbi xser # align_format axf
diff --git a/src/objtools/format/Makefile.xformat.lib b/src/objtools/format/Makefile.xformat.lib
-index a4fc469..fa58b3c 100644
+index 041a43a..bda6c63 100644
--- a/src/objtools/format/Makefile.xformat.lib
+++ b/src/objtools/format/Makefile.xformat.lib
@@ -19,3 +19,5 @@ SRC = accession_item basecount_item comment_item contig_item date_item \
- gather_iter html_anchor_item inst_info_map
+ gather_iter html_anchor_item inst_info_map gene_finder flat_qual_slots
WATCHERS = ludwigf dicuccio kornbluh
+
@@ -1601,7 +1604,7 @@ index 300ceb2..4a81ac9 100644
+
+DLL_LIB = xncbi general
diff --git a/src/objtools/readers/Makefile.xobjread.lib b/src/objtools/readers/Makefile.xobjread.lib
-index 0fbffd4..4ca9fed 100644
+index 8c9d2bf..28bbb88 100644
--- a/src/objtools/readers/Makefile.xobjread.lib
+++ b/src/objtools/readers/Makefile.xobjread.lib
@@ -19,5 +19,4 @@ SRC = read_util format_guess_ex \
@@ -1622,10 +1625,10 @@ index 85eefe2..9f317ae 100644
-DLL_LIB = xobjread
+DLL_LIB = xobjread xncbi xutil seq xobjmgr xobjutil
diff --git a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-index 687af1e..f48568c 100644
+index 8115a7f..f46b506 100644
--- a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
+++ b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-@@ -11,6 +11,6 @@ mask_writer_seqloc \
+@@ -12,6 +12,6 @@ mask_writer_seqloc \
mask_writer_blastdb_maskinfo
ASN_DEP = seqset
@@ -1643,27 +1646,27 @@ index dab25d6..f676dc7 100644
+DLL_LIB = xobjmgr ncbi_xloader_genbank
diff --git a/src/objtools/snputil/Makefile.snputil.lib b/src/objtools/snputil/Makefile.snputil.lib
-index 15abef3..5ad1560 100644
+index a259eca..dbcc9cd 100644
--- a/src/objtools/snputil/Makefile.snputil.lib
+++ b/src/objtools/snputil/Makefile.snputil.lib
@@ -9,3 +9,5 @@ SRC = snp_utils snp_bitfield \
- ASN_DEP = seqset
+ ASN_DEP = seqset variation
WATCHERS = rudnev
+
+DLL_LIB = general seq xncbi xobjmgr xser
diff --git a/src/objtools/validator/Makefile.validator.lib b/src/objtools/validator/Makefile.validator.lib
-index 80a74d8..6eec94b 100644
+index 4b78f86..63c2386 100644
--- a/src/objtools/validator/Makefile.validator.lib
+++ b/src/objtools/validator/Makefile.validator.lib
-@@ -19,3 +19,5 @@ NOOPT_CXX = $(CXX_WRAPPER) $(CXX) $(CXXFLAGS_ALL:-xO%=)
+@@ -12,3 +12,5 @@ LIB = xvalidate
+ ASN_DEP = general biblio pub seq seqset submit taxon3 valerr valid
- lat_lon_country_map.o: $(srcdir)/lat_lon_country_map.cpp
- $(NOOPT_CXX) $(srcdir)/lat_lon_country_map.cpp -o $@ $(CXX_FILTER)
+ WATCHERS = bollin
+
+DLL_LIB = xncbi xobjutil xalnmgr xformat taxon3 valerr valid
diff --git a/src/objtools/writers/Makefile.xobjwrite.lib b/src/objtools/writers/Makefile.xobjwrite.lib
-index cd6596b..a7d0c01 100644
+index d27e197..5dde419 100644
--- a/src/objtools/writers/Makefile.xobjwrite.lib
+++ b/src/objtools/writers/Makefile.xobjwrite.lib
@@ -15,3 +15,4 @@ SRC = agp_write \
@@ -1784,20 +1787,20 @@ index 4896661..8e2ad56 100644
CPPFLAGS = $(SRA_INCLUDE) -DNCBI_XLOADER_BAM_EXPORTS $(ORIG_CPPFLAGS)
diff --git a/src/sra/sdk/libs/align/Makefile.align-writer.lib b/src/sra/sdk/libs/align/Makefile.align-writer.lib
-index f2a2f58..f61b25a 100644
+index a7c4e77..0f39423 100644
--- a/src/sra/sdk/libs/align/Makefile.align-writer.lib
+++ b/src/sra/sdk/libs/align/Makefile.align-writer.lib
-@@ -6,7 +6,7 @@ LIB = align-writer
- SRC = dna-reverse-cmpl reader-cmn reader-refseq refseq-mgr writer-cmn \
- writer-refseq writer-alignment writer-sequence writer-ref writer-reference
+@@ -7,7 +7,7 @@ SRC = dna-reverse-cmpl reader-cmn reference-cmn reader-refseq refseq-mgr \
+ writer-cmn writer-refseq writer-alignment writer-sequence writer-ref \
+ writer-reference
--DLL_LIB = wvdb wkdb load kfg kfs klib $(Z_LIB)
-+DLL_LIB = wvdb wkdb load kfg kfs klib kapp $(Z_LIB)
+-DLL_LIB = wvdb wkdb kfg kfs klib $(Z_LIB)
++DLL_LIB = wvdb wkdb kfg kfs klib kapp $(Z_LIB)
LIBS = $(Z_LIBS) $(ORIG_LIBS)
CPPFLAGS = $(SRA_INCLUDE) $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY $(ORIG_CPPFLAGS)
diff --git a/src/util/Makefile.util.lib b/src/util/Makefile.util.lib
-index f103ff1..829a71c 100644
+index bb93ec9..d1b2737 100644
--- a/src/util/Makefile.util.lib
+++ b/src/util/Makefile.util.lib
@@ -14,3 +14,5 @@ PROJ_TAG = core
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch
index 8209603..3ed3e7d 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch
@@ -1,117 +1,11 @@
- src/build-system/configure | 34 +++++++++++++++++++++++-----------
- src/build-system/configure.ac | 33 ++++++++++++++++++++++-----------
- 2 files changed, 45 insertions(+), 22 deletions(-)
+ src/build-system/configure.ac | 17 ++++++++++++++---
+ 1 file changed, 14 insertions(+), 3 deletions(-)
-diff --git a/src/build-system/configure b/src/build-system/configure
-index 82fc9ef..d31a4f2 100755
---- a/src/build-system/configure
-+++ b/src/build-system/configure
-@@ -924,7 +924,7 @@ Optional Packages:
- --without-distcc do not automatically use distcc if available
- --without-ncbi-c do not use NCBI C Toolkit
- --without-sss do not use NCBI SSS libraries
-- --without-utils do not use NCBI SSS UTIL library
-+ --without-sssutils do not use NCBI SSS UTIL library
- --without-sssdb do not use NCBI SSS DB library
- --with-included-sss use the in-tree copy of SSS
- --with-z=DIR use zlib installation in DIR
-@@ -2835,12 +2835,12 @@ check ncbi-public strip pch caution ccache distcc \
- ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
- geo included-geo \
- z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
--ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
-+ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
- bdb python jni sqlite3 icu boost boost-tag \
- sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
- gif jpeg tiff png xpm magic curl 3psw \
- local-lbsm ncbi-crypt connext \
--serial objects dbapi app ctools gui algo internal gbench"
-+serial objects dbapi app ctools gui algo internal gbench x"
-
- x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-
-@@ -2864,6 +2864,7 @@ for x_arg in "$@" ; do
- case "$x_arg" in
- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-+ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
- | --with-relative-runpath= | --x-includes= | --x-libraries= )
- { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
- echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
-@@ -2876,6 +2877,7 @@ echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
- | --with-universal=* | --with-tcheck=* \
- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-+ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
- | [A-Z]*=* \
- | --with-z=* | --with-bz2=* | --with-lzo=* \
- | --with-pcre=* \
-@@ -3023,7 +3025,8 @@ echo "$as_me: error: --without-extra-action is not allowed" >&2;}
- fi
-
- case "$with_projects" in
-- "") if test -r projects; then
-+ ""|yes)
-+ if test -r projects; then
- { echo "$as_me:$LINENO: using default projects file \"projects\"." >&5
- echo "$as_me: using default projects file \"projects\"." >&6;}
- with_projects=projects
-@@ -3049,6 +3052,16 @@ echo "$as_me: WARNING: default projects file \"projects\" is a dangling link." >
- ;;
- esac
-
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ as_fn_error $? "unable to read requested projects file \"$abs_projects\"." "$LINENO" 5
-+fi
-+
-
- #### Always define this
-
-@@ -32712,7 +32725,7 @@ else
- sep=", "
- fi
- if test -n "$reason" -a "$with_internal" = "yes"; then
-- if test -z "$with_projects" -o "$with_projects" = "no"; then
-+ if test -z "$with_projects"; then
- { { echo "$as_me:$LINENO: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&5
- echo "$as_me: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&2;}
- { (exit 1); exit 1; }; }
-@@ -34949,11 +34962,9 @@ if test "$with_flat_makefile" != "no"; then
- else
- cfm_flags='-remoteptb'
- fi
-- case "$with_projects" in
-- yes ) cfm_flags="$cfm_flags -p projects" ;;
-- no | '' ) ;;
-- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
-- esac
-+ if test -n "$with_projects"; then
-+ cfm_flags="$cfm_flags -p $with_projects"
-+ fi
- if test "$with_configure_dialog" = yes; then
- cfm_flags="$cfm_flags -cfg"
- fi
-@@ -34997,7 +35008,8 @@ lib)
- esac
-
- if test -n "$with_projects"; then
-- build_proj="To build selected projects: cd $builddir && make all_p"
-+ build_proj="To build selected projects (as listed in \"$with_projects\"):
-+ cd $builddir && make all_p"
- fi
-
- cat << EOCONF
diff --git a/src/build-system/configure.ac b/src/build-system/configure.ac
-index 7b733af..3b55bf5 100644
+index 03e34b4..336453d 100644
--- a/src/build-system/configure.ac
+++ b/src/build-system/configure.ac
-@@ -222,7 +222,7 @@ AC_ARG_WITH(ncbi-c,
+@@ -224,7 +224,7 @@ AC_ARG_WITH(ncbi-c,
AC_ARG_WITH(sss,
[ --without-sss do not use NCBI SSS libraries])
AC_ARG_WITH(sssutils,
@@ -120,22 +14,23 @@ index 7b733af..3b55bf5 100644
AC_ARG_WITH(sssdb,
[ --without-sssdb do not use NCBI SSS DB library])
AC_ARG_WITH(included-sss,
-@@ -462,12 +462,12 @@ check ncbi-public strip pch caution ccache distcc \
+@@ -490,13 +490,13 @@ check ncbi-public strip pch caution ccache distcc \
ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
geo included-geo \
- z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
--ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
-+ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
- bdb python jni sqlite3 icu boost boost-tag \
- sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
- gif jpeg tiff png xpm magic curl 3psw \
+ z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
+-ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
++ftds mysql orbacus odbc freetype ftgl opengl mesa glut glew glew-mx \
+ bdb python perl jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt libexslt xerces xalan zorba \
+ oechem sge muparser hdf5 \
+ gif jpeg tiff png xpm magic curl mimetic 3psw \
local-lbsm ncbi-crypt connext \
-serial objects dbapi app ctools gui algo internal gbench"
+serial objects dbapi app ctools gui algo internal gbench x"
changequote(, )dnl
x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-@@ -493,6 +493,7 @@ for x_arg in "$@" ; do
+@@ -522,6 +522,7 @@ for x_arg in "$@" ; do
case "$x_arg" in
--with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
| --cache-file= | --build= | --host= | --target= | --with-runpath= \
@@ -143,7 +38,7 @@ index 7b733af..3b55bf5 100644
| --with-relative-runpath= | --x-includes= | --x-libraries= )
AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
;;
-@@ -503,6 +504,7 @@ for x_arg in "$@" ; do
+@@ -532,6 +533,7 @@ for x_arg in "$@" ; do
| --with-universal=* | --with-tcheck=* \
| --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
| --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
@@ -151,20 +46,10 @@ index 7b733af..3b55bf5 100644
| [[A-Z]*=*] \
| --with-z=* | --with-bz2=* | --with-lzo=* \
| --with-pcre=* \
-@@ -581,7 +583,8 @@ if test "$with_extra_action" = "no" ; then
+@@ -647,6 +649,15 @@ if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
+ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
+ esac
fi
-
- case "$with_projects" in
-- "") if test -r projects; then
-+ ""|yes)
-+ if test -r projects; then
- AC_MSG_NOTICE([using default projects file "projects".])
- with_projects=projects
- AC_SUBST(PROJECTS, "\$(top_srcdir)/projects")
-@@ -599,6 +602,15 @@ case "$with_projects" in
- * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
- esac
-
+if test -n "$with_projects"; then
+ case "$with_projects" in
+ /* ) abs_projects=$with_projects ;;
@@ -177,37 +62,3 @@ index 7b733af..3b55bf5 100644
#### Always define this
AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
-@@ -6198,7 +6210,7 @@ else
- sep=", "
- fi
- if test -n "$reason" -a "$with_internal" = "yes"; then
-- if test -z "$with_projects" -o "$with_projects" = "no"; then
-+ if test -z "$with_projects"; then
- AC_MSG_ERROR([--with-internal: Cannot build INTERNAL projects: missing $reason])
- else
- AC_MSG_WARN([--with-internal: Cannot build all INTERNAL projects: missing $reason])
-@@ -6807,11 +6819,9 @@ if test "$with_flat_makefile" != "no"; then
- else
- cfm_flags='-remoteptb'
- fi
-- case "$with_projects" in
-- yes ) cfm_flags="$cfm_flags -p projects" ;;
-- no | '' ) ;;
-- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
-- esac
-+ if test -n "$with_projects"; then
-+ cfm_flags="$cfm_flags -p $with_projects"
-+ fi
- if test "$with_configure_dialog" = yes; then
- cfm_flags="$cfm_flags -cfg"
- fi
-@@ -6854,7 +6864,8 @@ lib)
- esac
-
- if test -n "$with_projects"; then
-- build_proj="To build selected projects: cd $builddir && make all_p"
-+ build_proj="To build selected projects (as listed in \"$with_projects\"):
-+ cd $builddir && make all_p"
- fi
-
- cat << EOCONF
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index f217ab3..a839d6b 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -4,7 +4,7 @@
EAPI=5
-inherit eutils flag-o-matic multilib toolchain-funcs
+inherit autotools eutils flag-o-matic multilib toolchain-funcs
MY_TAG="Jun_15_2010"
MY_Y="${MY_TAG/*_/}"
@@ -105,8 +105,8 @@ src_prepare() {
# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
local PATCHES=(
- #"${FILESDIR}"/${P}-conf-opts.patch
- #"${FILESDIR}"/${P}-as-needed.patch
+ "${FILESDIR}"/${P}-conf-opts.patch
+ "${FILESDIR}"/${P}-as-needed.patch
"${FILESDIR}"/${P}-fix-creaders-linking.patch
"${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
"${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
@@ -115,7 +115,8 @@ src_prepare() {
tc-export CXX CC
-# cd src/build-system || die
+ cd src/build-system || die
+ eautoreconf
# eaclocal -I.
# eautoconf
}
@@ -216,7 +217,7 @@ src_configure() {
$(use_with ssl openssl "${EPREFIX}/usr")
$(use_with ftds ftds "${EPREFIX}/usr")
$(use_with mysql mysql "${EPREFIX}/usr")
- $(use_with fltk fltk "${EPREFIX}/usr")
+ $(usex fltk --with-fltk="${EPREFIX}/usr" "")
$(use_with opengl opengl "${EPREFIX}/usr")
$(use_with mesa mesa "${EPREFIX}/usr")
$(use_with opengl glut "${EPREFIX}/usr")
@@ -227,7 +228,7 @@ src_configure() {
$(use_with freetype freetype "${EPREFIX}/usr")
$(use_with fastcgi fastcgi "${EPREFIX}/usr")
$(use_with berkdb bdb "${EPREFIX}/usr")
- $(use_with odbc odbc "${EPREFIX}/usr")
+ $(usex odbc --with-odbc="${EPREFIX}/usr" "")
$(use_with python python "${EPREFIX}/usr")
$(use_with boost boost "${EPREFIX}/usr")
$(use_with sqlite sqlite3 "${EPREFIX}/usr")
@@ -259,7 +260,6 @@ src_configure() {
# bash \
# ./src/build-system/configure \
-# cd src/build-system || die
econf \
--srcdir="${S}" \
--prefix="${EPREFIX}/usr" \
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-06-23 16:10 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2014-06-23 16:10 UTC (permalink / raw
To: gentoo-commits
commit: 8d30af0e3afd031e00f5d69fce3683233a23b487
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jun 23 16:10:25 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jun 23 16:10:25 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8d30af0e
add patches for 12.0.0 to support autoconf-2.60 (so far 2.59 was needed)
---
...ncbi-tools++-12.0.0-support-autoconf-2.60.patch | 1660 ++++++++++++++++++++
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 10 +-
2 files changed, 1667 insertions(+), 3 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
new file mode 100644
index 0000000..80b23e9
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
@@ -0,0 +1,1660 @@
+--- ncbi_cxx--12_0_0/src/build-system/configure.ac.ori 2014-06-23 17:35:47.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/configure.ac 2014-06-23 17:36:41.000000000 +0200
+@@ -1,5 +1,5 @@
+ #############################################################################
+-# $Id: configure.ac 398256 2013-05-03 19:14:07Z rafanovi $
++# $Id$
+ # Derived from configure.in version 1.173.
+ # ==========================================================================
+ #
+@@ -38,7 +38,7 @@
+ #
+ #############################################################################
+
+-AC_PREREQ(2.59)
++AC_PREREQ(2.60)
+
+ dnl Early setup, most crucially for locking. The diversion magic lets
+ dnl this occur before AC_INIT, which already interferes with other
+@@ -71,7 +71,7 @@
+ python, perl, jni, sqlite3, mimetic, sge, icu, sp, expat,
+ sablot, libxml, libxslt, libexslt, xerces, xalan, zorba,
+ oechem, muparser, hdf5, gif, jpeg, png, tiff, xpm,
+- magic, curl],
++ magic, curl, gsoap, mongodb],
+ [if test "${[with_]X-no}" != "no"; then
+ AC_MSG_ERROR([incompatible options: --with-]X[ but --without-3psw])
+ else
+@@ -143,6 +143,8 @@
+ [ --with-bin-release build executables suitable for public release])
+ AC_ARG_WITH(mt,
+ [ --with-mt compile in a MultiThread-safe manner])
++AC_ARG_WITH(openmp,
++ [ --with-openmp enable OpenMP extensions for all projects])
+ AC_ARG_WITH(64,
+ [ --with-64 compile to 64-bit code])
+ AC_ARG_WITH(universal,
+@@ -220,11 +222,15 @@
+
+ ## NCBI packages
+ AC_ARG_WITH(ncbi-c,
++ [ --with-ncbi-c=DIR use NCBI C Toolkit installation in DIR])
++AC_ARG_WITH(ncbi-c2,
+ [ --without-ncbi-c do not use NCBI C Toolkit])
+ AC_ARG_WITH(sss,
++ [ --with-sss=DIR use NCBI SSS installation in DIR])
++AC_ARG_WITH(sss2,
+ [ --without-sss do not use NCBI SSS libraries])
+ AC_ARG_WITH(sssutils,
+- [ --without-sssutils do not use NCBI SSS UTIL library])
++ [ --without-utils do not use NCBI SSS UTIL library])
+ AC_ARG_WITH(sssdb,
+ [ --without-sssdb do not use NCBI SSS DB library])
+ AC_ARG_WITH(included-sss,
+@@ -439,6 +445,14 @@
+ [ --with-mimetic=DIR use libmimetic installation in DIR])
+ AC_ARG_WITH(mimetic2,
+ [ --without-mimetic do not use libmimetic])
++AC_ARG_WITH(gsoap,
++ [ --with-gsoap=DIR use gSOAP++ installation in DIR])
++AC_ARG_WITH(gsoap2,
++ [ --without-gsoap do not use gSOAP++])
++AC_ARG_WITH(mongodb,
++ [ --with-mongodb=DIR use MongoDB installation in DIR])
++AC_ARG_WITH(mongodb2,
++ [ --without-mongodb do not use MongoDB])
+ AC_ARG_WITH(3psw,
+ [ --with-3psw=std:netopt favor standard (system) builds of the above pkgs.])
+ AC_ARG_WITH(3psw2,
+@@ -479,24 +493,28 @@
+ [***** See also HTML documentation in ./doc/index.html *****])
+
+
++AC_DIVERT_PUSH(PARSE_ARGS)
++dnl As of Autoconf 2.60, this needs to run too early for config.log,
++dnl to which AC_MSG_ERROR normally copies its output, to be available.
++m4_rename([AS_MESSAGE_LOG_FD], [NCBI_ORIG_ASMLFD])
+ #### Check the passed arguments against the list of available ones
+ x_with_list="\
+ debug max-debug symbols optimization profiling tcheck dll static static-exe \
+ plugin-auto-load bundles bin-release mt 64 universal exe runpath hard-runpath \
+-lfs limited-linker \
++lfs limited-linker openmp \
+ autodep suffix hostspec version execopy bincopy lib-rebuilds lib-rebuilds=ask \
+ deactivation makefile-auto-update projects flat-makefile configure-dialog \
+ check ncbi-public strip pch caution ccache distcc \
+ ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+ geo included-geo \
+ z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
+-ftds mysql orbacus odbc freetype ftgl opengl mesa glut glew glew-mx \
++ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
+ bdb python perl jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt libexslt xerces xalan zorba \
+ oechem sge muparser hdf5 \
+-gif jpeg tiff png xpm magic curl mimetic 3psw \
++gif jpeg tiff png xpm magic curl mimetic gsoap mongodb 3psw \
+ local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench x"
++serial objects dbapi app ctools gui algo internal gbench"
+
+ changequote(, )dnl
+ x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+@@ -522,7 +540,6 @@
+ case "$x_arg" in
+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
+- | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
+ AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
+ ;;
+@@ -533,12 +550,11 @@
+ | --with-universal=* | --with-tcheck=* \
+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
+- | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
+ | [[A-Z]*=*] \
+ | --with-z=* | --with-bz2=* | --with-lzo=* \
+- | --with-pcre=* \
++ | --with-pcre=* | --with-ncbi-c=* | --with-sss=* \
+ | --with-gcrypt=* | --with-gnutls=* | --with-openssl=* \
+- | --with-krb5=* | --with-curl=* \
++ | --with-krb5=* | --with-curl=* | --with-gsoap=* | --with-mongodb=* \
+ | --with-sybase-local=* | --with-wxwidgets=* | --with-mimetic=* \
+ | --with-ftds=* | --with-mysql=* | --with-fastcgi=* \
+ | --with-sqlite3=* | --with-expat=* | --with-sablot=* \
+@@ -552,7 +568,7 @@
+ | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
+ | --x-includes=* | --x-libraries=* | --with-3psw=* \
+ | --target=* | --with-runpath=* | --with-relative-runpath=* \
+- | --no-create | --no-recursion)
++ | --help | --no-create | --no-recursion)
+ ;;
+
+ * )
+@@ -560,6 +576,8 @@
+ ;;
+ esac
+ done
++m4_rename([NCBI_ORIG_ASMLFD], [AS_MESSAGE_LOG_FD])
++AC_DIVERT_POP
+
+
+ if test "$with_gbench" = "yes" ; then
+@@ -604,6 +622,13 @@
+ : ${with_optimization=no}
+ fi
+
++if test "$with_openmp" = yes; then
++ if test "$with_mt" = no; then
++ AC_MSG_ERROR([incompatible options: --without-mt but --with-openmp])
++ fi
++ : ${with_mt=yes}
++fi
++
+ #### Check for special options
+ if test "$with_extra_action" = "yes" ; then
+ AC_MSG_ERROR([--with-extra-action must have a value after =])
+@@ -649,15 +674,10 @@
+ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
+ esac
+ fi
+-if test -n "$with_projects"; then
+- case "$with_projects" in
+- /* ) abs_projects=$with_projects ;;
+- yes) abs_projects=$srcdir/projects ;;
+- * ) abs_projects=$srcdir/$with_projects ;;
+- esac
+- test -r "$abs_projects" || \
+- AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
+-fi
++# Generally save any originally specified flags.
++USER_CFLAGS=$CFLAGS
++USER_CXXFLAGS=$CXXFLAGS
++USER_LDFLAGS=$LDFLAGS
+
+ #### Always define this
+ AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
+@@ -675,6 +695,23 @@
+ #### Make some provisions for traditional operation
+ AC_PROG_INSTALL
+
++#### Point ICC at a suitable GCC version ASAP.
++case "/$CXX" in
++ */icpc )
++ if test -d /usr/local/gcc; then
++ case "`$CXX -dumpversion`:$host_cpu" in
++ *:i?86) v=4.4.5 ;;
++ ?.* | 1[[01]].* ) v=4.0.1 ;;
++ *) v=4.4.2 ;;
++ esac
++ gcc=/usr/local/gcc/$v/bin/gcc
++ if test -x $gcc; then
++ CC="$CC -gcc-name=$gcc"
++ CXX="$CXX -gcc-name=$gcc"
++ fi
++ fi
++ ;;
++esac
+
+ #### C and C++ compilers
+ AC_LANG(C++)
+@@ -987,6 +1024,30 @@
+ ;;
+ * ) NCBIATOMIC_LIB=xncbi ;;
+ esac
++ case "$compiler" in
++ GCC )
++ if $CC -v | grep clang >/dev/null; then
++ :
++ # Will allegedly support -openmp at some point, but as of 3.4,
++ # just parses it as specifying an output filename: -o penmp.
++ else
++ case "$compiler_version" in
++ [[123]]?? | 4[[01]]? ) ;;
++ * ) : ${OPENMP_FLAGS=-fopenmp} ;;
++ esac
++ fi
++ ;;
++ ICC )
++ : ${OPENMP_FLAGS=-openmp}
++ ;;
++ WorkShop* )
++ : ${OPENMP_FLAGS=-xopenmp=parallel}
++ ;;
++ esac
++ if test "$with_openmp" = yes; then
++ MT_FLAG="$MT_FLAG $OPENMP_FLAGS"
++ OPENMP_FLAGS=
++ fi
+ mt_sfx="MT"
+ NCBI_FEATURE(MT)
+ else
+@@ -994,6 +1055,7 @@
+ MT_FLAG=
+ THREAD_LIBS=
+ NCBIATOMIC_LIB=
++ OPENMP_FLAGS=
+ mt_sfx=""
+ fi
+ MT_SFX="${mt_sfx}"
+@@ -1006,6 +1068,9 @@
+ APP_LDFLAGS=
+ DLL_LDFLAGS=
+
++### Should go before any test compiler runs
++AC_GNU_SOURCE
++
+ case "$host_os:$compiler" in
+ darwin*:GCC )
+ AC_CACHE_CHECK([whether $CC supports -Wl,-rpath],
+@@ -1047,6 +1112,47 @@
+ ;;
+ esac
+
++case "$compiler:$compiler_version" in
++ GCC:4[[0-6]]? | ICC:1[[01]]?? )
++ ncbi_cv_prog_cxx_11=no
++ ncbi_cv_prog_c_99=no
++ ;;
++ ICC:* )
++ ncbi_cv_prog_c_99='-std=gnu99 -fgnu89-inline'
++ ;;
++esac
++
++AC_CACHE_CHECK([how to enable C++ '11 features in $CXX],
++ ncbi_cv_prog_cxx_11,
++ [orig_CXX=$CXX
++ ncbi_cv_prog_cxx_11=no
++ for x in -std=gnu++11 -std=gnu++0x; do
++ CXX="$orig_CXX $x"
++ AC_LINK_IFELSE([AC_LANG_PROGRAM([], [])],
++ [ncbi_cv_prog_cxx_11=$x])
++ test "x$ncbi_cv_prog_cxx_11" = "xno" || break
++ done
++ CXX=$orig_CXX])
++test "$ncbi_cv_prog_cxx_11" = no || CXX="$CXX $ncbi_cv_prog_cxx_11"
++
++AC_LANG_PUSH(C)
++AC_CACHE_CHECK([how to enable C '11 or at least '99 features in $CC],
++ ncbi_cv_prog_c_99,
++ [orig_CC=$CC
++ ncbi_cv_prog_c_99=no
++ for x in -xc99=all "-std=gnu11 -fgnu89-inline" \
++ "-std=gnu1x -fgnu89-inline" \
++ "-std=gnu99 -fgnu89-inline" \
++ "-std=gnu9x -fgnu89-inline"; do
++ CC="$orig_CC $x"
++ AC_LINK_IFELSE([AC_LANG_PROGRAM([], [])],
++ [ncbi_cv_prog_c_99=$x])
++ test "x$ncbi_cv_prog_c_99" = "xno" || break
++ done
++ CC=$orig_CC])
++AC_LANG_POP(C)
++test "$ncbi_cv_prog_c_99" = no || CC="$CC $ncbi_cv_prog_c_99"
++
+ #### Provide default environment setup for known platforms/compilers
+ DEPFLAGS="-M"
+ DEPFLAGS_POST="" # Needed for VisualAge
+@@ -1059,7 +1165,15 @@
+ ;;
+
+ solaris*:GCC )
+- CPPFLAGS="-D_XOPEN_SOURCE=500 $CPPFLAGS"
++ # On Solaris, GCC defaults to setting _XOPEN_SOURCE (to 500) only
++ # in C++ mode. Set it for C code as well to ensure consistent
++ # header behavior, taking care to match the C standard version
++ # (as enforced by <sys/feature_tests.h>).
++ case "$ncbi_cv_prog_c_99" in
++ no) CC="$CC -D_XOPEN_SOURCE=500" ;;
++ *) CC="$CC -D_XOPEN_SOURCE=600" ;;
++ esac
++
+ STRIP="@:"
+ ;;
+
+@@ -1202,11 +1316,19 @@
+ LDFLAGS="-flat_namespace $LDFLAGS"
+
+ if test "$with_ncbi_public" = yes; then
++ sdks='/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk'
++ case "$host_os" in
++ darwin?.* | darwin10.* ) # Mac OS X 10.6.x or older
+ TARGET='-mmacosx-version-min=10.5'
+- sdks='/Developer/SDKs/MacOSX10.6.sdk /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.6.sdk'
++ sdks="/Developer/SDKs/MacOSX10.6.sdk"
+ if test "$with_64:${with_universal-no}" != "yes:no"; then
+ sdks="/Developer/SDKs/MacOSX10.5.sdk $sdks"
+ fi
++ ;;
++ * )
++ TARGET='-mmacosx-version-min=10.7'
++ ;;
++ esac
+ for sdk in $sdks; do
+ if test -d "$sdk"; then
+ TARGET="-isysroot $sdk $TARGET"
+@@ -1487,8 +1609,8 @@
+ ;;
+ GCC:* )
+ DEF_FAST_FLAGS="-O3 -finline-functions -fstrict-aliasing"
+- case "$host_os" in
+- freebsd* ) ;;
++ case "$host_os:$host_cpu:$compiler_version" in
++ freebsd* | solaris*:*86*:* | *:4[[5-9]]? | *:[[5-9]]?? ) ;;
+ * ) DEF_FAST_FLAGS="$DEF_FAST_FLAGS -ffast-math" ;;
+ esac
+ if test "$with_profiling" != "yes"; then
+@@ -1587,13 +1709,9 @@
+ solaris* )
+ CONF_f_runpath="-R"
+ ;;
+- linux*:GCC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
++ linux*:[[GI]]CC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
+ CONF_f_runpath="-Wl,-rpath,"
+ ;;
+- linux*:ICC )
+- # trying to use "-Wl,-rpath," here sends "ld" to endless 100% CPU loop
+- CONF_f_runpath="-Xlinker -rpath -Xlinker "
+- ;;
+ irix*:* | linux*:KCC | *:Compaq )
+ CONF_f_runpath="-rpath "
+ ;;
+@@ -1697,8 +1815,11 @@
+ LINK="$LINK -Kc++"
+ ;;
+ ICC:1???:* )
+- APP_LDFLAGS="-static-intel $APP_LDFLAGS"
+- DLL_LDFLAGS="-static-intel -nodefaultlibs $DLL_LDFLAGS"
++ # Suppress "warning #10237: -lcilkrts linked in dynamically, static
++ # library not available" which is not a problem in practice due to
++ # as-needed linkage.
++ APP_LDFLAGS="-static-intel -diag-disable 10237 $APP_LDFLAGS"
++ DLL_LDFLAGS="-static-intel -diag-disable 10237 -nodefaultlibs $DLL_LDFLAGS"
+ # Redundant for apps, but necessary for plugins to be adequately
+ # self-contained, at least on 32-bit Linux.
+ LIBS="$LIBS -lstdc++"
+@@ -1817,18 +1938,6 @@
+
+ #### Intel compiler:: common flags and definitions
+ if test "$compiler" = "ICC" ; then
+- if test -d /usr/local/gcc; then
+- case "$compiler_version:$HOST_CPU" in
+- *:i?86) v=4.4.5 ;;
+- ???:* | 1[[01]]??:* ) v=4.0.1 ;;
+- *) v=4.4.2 ;;
+- esac
+- gcc=/usr/local/gcc/$v/bin/gcc
+- if test -x $gcc; then
+- CC="$CC -gcc-name=$gcc"
+- CXX="$CXX -gcc-name=$gcc"
+- fi
+- fi
+ if test -n "$icc_license" ; then
+ icc_CC="$CC"
+ icc_CXX="$CXX"
+@@ -2073,6 +2182,7 @@
+ fi
+
+ AC_PATH_PROG(TOUCH, touch, [], /bin:/usr/bin:$PATH)
++dnl AC_PATH_PROG(GREP, grep)
+ AC_PROG_EGREP
+ AC_MSG_CHECKING([how to run $EGREP quietly])
+ if test -z "`echo foo | $EGREP -q fo+ 2>>config.log || echo $?`"; then
+@@ -2086,6 +2196,16 @@
+
+ AC_CHECK_PROG(VALGRIND_PATH, valgrind, valgrind)
+
++AC_PATH_PROG(LDD, ldd)
++if test -n "$LDD"; then
++ AC_MSG_CHECKING([whether $LDD accepts -r])
++ if $LDD -r /bin/ls >/dev/null 2>&1; then
++ AC_MSG_RESULT(yes)
++ LDD_R="$LDD -r"
++ else
++ AC_MSG_RESULT(no)
++ fi
++fi
+
+ #### Check if "${build_root}" is defined; provide a default one
+ if test -n "${with_build_root}" ; then
+@@ -2170,9 +2290,6 @@
+ fi
+
+
+-### Should go before any test compiler runs
+-AC_GNU_SOURCE
+-
+ #### Determine whether this is implicitly a 64-bit platform
+ AC_TYPE_SIZE_T
+ if test "${with_universal-no}" = "no"; then
+@@ -2342,7 +2459,7 @@
+ fi
+ ;;
+ *:ICC )
+- runpath="$runpath -Xlinker -rpath-link -Xlinker \$(libdir)"
++ runpath="$runpath -Wl,-rpath-link,\$(libdir)"
+ ;;
+ esac
+ elif test "$with_runpath" = "yes" -o "$with_dll" != "no" ; then
+@@ -2658,15 +2775,30 @@
+ dbgrx1="$wsrx-g[^cx$wschars]*$wsrx"
+ dbgrx2="$wsrx-gx*coff[0-9+]*$wsrx"
+ optrx="$wsrx-x*O[0-9s]*$wsrx"
++ NDEB_CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ NDEB_CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ NDEB_LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+ if test "$with_symbols" = "no" ; then
+- CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+- CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+- LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ CFLAGS=$NDEB_CFLAGS
++ CXXFLAGS=$NDEB_CXXFLAGS
++ LDFLAGS=$NDEB_LDFLAGS
+ else
+ echo " $CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || CFLAGS="$CFLAGS -g"
+ echo " $CXXFLAGS "| $EGREP_Q "$dbgrx1|$dbgrx2" || CXXFLAGS="$CXXFLAGS -g"
+ echo " $LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || LDFLAGS="$LDFLAGS -g"
+ STRIP="@:"
++ case "$compiler:$compiler_version" in
++ GCC:4[89]? | GCC:[5-9]? | GCC:???? )
++ # GCC 4.8 defaults to DWARF 4, which Totalview for one
++ # can't handle; roll back to version 3 by default.
++ echo " $USER_CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ CFLAGS="$NDEB_CFLAGS -gdwarf-3"
++ echo " $USER_CXXFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ CXXFLAGS="$NDEB_CXXFLAGS -gdwarf-3"
++ echo " $USER_LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ LDFLAGS="$NDEB_LDFLAGS -gdwarf-3"
++ ;;
++ esac
+ fi
+
+ NOPT_CFLAGS=` echo " $CFLAGS " | sed "s/$optrx/ /g"`
+@@ -3024,9 +3156,9 @@
+ ### Check for other standard library functions
+
+ AC_FUNC_VPRINTF
+-AC_CHECK_FUNCS(euidaccess atoll basename lchown fseeko getpagesize \
+- getpass getpassphrase getpwuid getrusage gettimeofday \
+- getuid memrchr readpassphrase readv usleep \
++AC_CHECK_FUNCS(euidaccess atoll basename lchown fseeko getgrouplist \
++ getpagesize getpass getpassphrase getpwuid getrusage \
++ gettimeofday getuid memrchr readpassphrase readv usleep \
+ asprintf vasprintf vsnprintf select statfs statvfs \
+ strcasecmp strlcat strlcpy strdup strndup strtok_r \
+ sysmp timegm utimes lutimes writev)
+@@ -3253,17 +3385,6 @@
+ fi
+
+
+-AC_CACHE_CHECK([for std::is_sorted<> in <algorithm>], ncbi_cv_func_is_sorted,
+- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM(
+- [[#include <algorithm>]],
+- [[int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;]])],
+- [ncbi_cv_func_is_sorted=yes], [ncbi_cv_func_is_sorted=no])])
+-if test "$ncbi_cv_func_is_sorted" = yes; then
+- AC_DEFINE(HAVE_IS_SORTED, 1,
+- [Define to 1 if <algorithm> supplies `std::is_sorted<>'.])
+-fi
+-
+-
+
+ AC_CACHE_CHECK([for SysV semaphores], ncbi_cv_sys_semaphores,
+ AC_LINK_IFELSE([AC_LANG_PROGRAM([#include <sys/types.h>
+@@ -3400,7 +3521,7 @@
+ AC_CACHE_CHECK([whether the C compiler supports C99 restrict],
+ ncbi_cv_c_restrict,
+ [ncbi_cv_c_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_c_restrict" = "no" || break
+ AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
+ [ncbi_cv_c_restrict=$restrict], [])
+@@ -3420,7 +3541,7 @@
+ AC_CACHE_CHECK([whether the C++ compiler supports C99 restrict],
+ ncbi_cv_cxx_restrict,
+ [ncbi_cv_cxx_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_cxx_restrict" = "no" || break
+ AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
+ [ncbi_cv_cxx_restrict=$restrict], [])
+@@ -3525,14 +3646,6 @@
+ unaligned addresses.])
+ fi
+
+-AC_CACHE_CHECK([whether $CXX supports C++0x nullptr], ncbi_cv_cxx_nullptr,
+- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([], [[void * p = nullptr;]])],
+- [ncbi_cv_cxx_nullptr=yes], [ncbi_cv_cxx_nullptr=no])])
+-if test "$ncbi_cv_cxx_nullptr" = yes; then
+- AC_DEFINE(HAVE_NULLPTR, 1,
+- [Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword.])
+-fi
+-
+ ### Check for the availability of other packages
+ ### --------------------------------------------
+
+@@ -3630,7 +3743,16 @@
+ dnl NCBI_CHECK_LIBS(FUSE, fuse, fuse_loop)
+ AC_SEARCH_LIBS(fuse_loop, fuse, [NCBI_PACKAGE(FUSE)])
+ LIBS=$orig_LIBS
++# Temporarily drop OpenMP flags for this test, as some toolchains count
++# its support library's indirect use of librt when building applications
++# but not when building shared libraries with --no-undefined.
++orig_CXXFLAGS=$CXXFLAGS
++orig_LDFLAGS=$LDFLAGS
++CXXFLAGS=`echo $CXXFLAGS | sed -e 's/[[^ ]]*openmp[[^ ]]*//g'`
++LDFLAGS=`echo $LDFLAGS | sed -e 's/[[^ ]]*openmp[[^ ]]*//g'`
+ NCBI_CHECK_LIBS(RT, rt posix4, clock_gettime)
++CXXFLAGS=$orig_CXXFLAGS
++LDFLAGS=$orig_LDFLAGS
+ NCBI_CHECK_LIBS(DEMANGLE, demangle, cplus_demangle)
+ # Add to (orig_)LIBS if present for the sake of corelib and the
+ # following call to AC_CHECK_FUNCS.
+@@ -3734,7 +3856,6 @@
+ NCBI_PACKAGE(LocalBZ2)
+ fi
+
+-: ${LZO_PATH=$NCBI/lzo2}
+ if test -d "$LZO_PATH"; then
+ NCBI_FIX_DIR(LZO_PATH)
+ fi
+@@ -3767,7 +3888,7 @@
+ ## SSL/TLS libraries
+ case "$with_gcrypt" in
+ no ) ac_cv_path_LIBGCRYPT_CONFIG=no ;;
+- yes | '' ) : ${GCRYPT_PATH=$NCBI/gcrypt} ;;
++ yes | '' ) ;;
+ * ) GCRYPT_PATH=$with_gcrypt ;;
+ esac
+ if test -d "$GCRYPT_PATH"; then
+@@ -3802,13 +3923,16 @@
+
+ case "$with_gnutls" in
+ no ) ac_cv_path_LIBGNUTLS_CONFIG=no ;;
+- yes | '' ) : ${GNUTLS_PATH=$NCBI/gnutls} ;;
++ yes | '' ) ;;
+ * ) GNUTLS_PATH=$with_gnutls ;;
+ esac
+ if test -d "$GNUTLS_PATH"; then
+ NCBI_FIX_DIR(GNUTLS_PATH)
++ gnutls_config_path=${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin
++else
++ gnutls_config_path=$PATH
+ fi
+-AC_PATH_PROG(LIBGNUTLS_CONFIG, libgnutls-config, [], [${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin:$PATH])
++AC_PATH_PROG(LIBGNUTLS_CONFIG, libgnutls-config, [], [$gnutls_config_path])
+
+ if test "x$with_gnutls" != xno; then
+ if test -x "$LIBGNUTLS_CONFIG"; then
+@@ -3817,7 +3941,7 @@
+ test "x$p" = "x/usr" || GNUTLS_PATH=$p
+ fi
+ else
+- LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls"
++ LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls --static"
+ $LIBGNUTLS_CONFIG --exists >/dev/null 2>&1 || LIBGNUTLS_CONFIG=no
+ fi
+ case "$LIBGNUTLS_CONFIG" in
+@@ -3846,6 +3970,10 @@
+ $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS)
+ if test "x$with_gnutls" != xno -a -n "$GNUTLS_CONFIG_LIBS"; then
+ NCBI_RPATHIFY_OUTPUT(GNUTLS_LIBS, [echo $GNUTLS_CONFIG_LIBS], [$no_usr_lib])
++ # Conservatively build against gcrypt if available even when gnutls
++ # uses nettle instead, because gcrypt needs explicit initialization
++ # to be thread-safe, but gnutls's headers don't indicate which
++ # underlying crypto library it's actually using.
+ case "$GNUTLS_INCLUDE" in
+ *$GCRYPT_INCLUDE* ) ;;
+ * ) GNUTLS_INCLUDE="$GNUTLS_INCLUDE $GCRYPT_INCLUDE" ;;
+@@ -4108,7 +4236,8 @@
+ SYBASE_DBLIBS="$SYBASE_LPATH $SYBASE_DBLIBS"
+ SYBASE_DLLS="$SYBASE_DLLLIST"
+
+- AC_CACHE_CHECK([for Sybase in $SYBASE_PATH], ncbi_cv_lib_sybase,
++ AC_CACHE_CHECK([for Sybase${SYBASE_PATH:+ in $SYBASE_PATH}],
++ ncbi_cv_lib_sybase,
+ [CPPFLAGS="$SYBASE_INCLUDE $orig_CPPFLAGS"
+ LIBS="$SYBASE_LIBS $SYBASE_DLLS $SYBASE_NETWORK_LIBS $DL_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -4216,7 +4345,8 @@
+ AC_MSG_NOTICE([Using bundled FreeTDS (version $ftds_ver) from $FTDS_PATH])
+ else
+ FTDS_LIBS="$FTDS_CTLIBS"
+- AC_CACHE_CHECK([for FreeTDS in $FTDS_PATH], ncbi_cv_lib_freetds,
++ AC_CACHE_CHECK([for FreeTDS${FTDS_PATH:+ in $FTDS_PATH}],
++ ncbi_cv_lib_freetds,
+ [CPPFLAGS="$FTDS_INCLUDE $orig_CPPFLAGS"
+ LIBS="$FTDS_LIBS $NETWORK_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -4281,7 +4411,7 @@
+ # Kill off single quotes, due to later requoting
+ : ${MYSQL_INCLUDE=`$mysql_config --include | tr -d \'`}
+ NCBI_RPATHIFY_OUTPUT_COND(MYSQL_LIBS, $mysql_config --libs${mt_sfx:+_r},
+- [s/'//g; ])
++ [s/'//g; $no_usr_lib])
+ AC_CACHE_CHECK([whether MySQL works], ncbi_cv_lib_mysql,
+ [CPPFLAGS="$MYSQL_INCLUDE $orig_CPPFLAGS"
+ LIBS="$MYSQL_LIBS $orig_LIBS"
+@@ -4310,7 +4440,6 @@
+ if test "$with_bdb" != "no" ; then
+ case "$with_bdb" in
+ yes | "" )
+- : ${BERKELEYDB_PATH:="$NCBI/BerkeleyDB"}
+ ;;
+ */*)
+ BERKELEYDB_PATH=$with_bdb
+@@ -4351,7 +4480,8 @@
+ else
+ BERKELEYDB_STATIC_LIBS=${BERKELEYDB_LIBS}
+ fi
+- AC_CACHE_CHECK([for Berkeley DB libraries in $BERKELEYDB_PATH],
++ AC_CACHE_CHECK(
++ [for Berkeley DB libraries${BERKELEYDB_PATH:+ in $BERKELEYDB_PATH}],
+ ncbi_cv_lib_berkeley_db,
+ [CPPFLAGS="$BERKELEYDB_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BERKELEYDB_LIBS $orig_LIBS"
+@@ -4450,7 +4580,8 @@
+ NCBI_RPATHIFY(ODBC_LIBS, ${ODBC_LIBPATH}, [ -lodbc -lodbcinst])
+ CPPFLAGS="$ODBC_INCLUDE $orig_CPPFLAGS"
+ LIBS="$ODBC_LIBS $orig_LIBS"
+- AC_CACHE_CHECK([for ODBC libraries in $ODBC_PATH], ncbi_cv_lib_odbc,
++ AC_CACHE_CHECK([for ODBC libraries${ODBC_PATH:+ in $ODBC_PATH}],
++ ncbi_cv_lib_odbc,
+ [AC_LINK_IFELSE([AC_LANG_PROGRAM(
+ [[#include <sql.h>]],
+ [[SQLHDBC hdbc; SQLCHAR* cp = (SQLCHAR*) "x";
+@@ -4542,7 +4673,7 @@
+ AC_PATH_PROG(PERL, perl, [], [$PERL_PATH/bin:$PATH])
+ if test -x "$PERL"; then
+ PERL_ARCHLIB=`$PERL -MConfig -e 'print \$Config{archlibexp};'`
+- PERL_FLAGS=`$PERL -MConfig -e 'print \$Config{cppflags};'`
++ PERL_FLAGS=`$PERL -MConfig -e 'print join " ", grep /^-[[DI]]/, split /\\s+/, \$Config{cppflags};'`
+ PERL_INCLUDE="-I$PERL_ARCHLIB/CORE $PERL_FLAGS"
+ PERL_DEPS=`$PERL -MConfig -e 'print \$Config{libs};'`
+ NCBI_RPATHIFY(PERL_LIBS, $PERL_ARCHLIB/CORE, [ -lperl $PERL_DEPS])
+@@ -4603,9 +4734,7 @@
+
+ ## Boost
+ if test "$with_boost" != "no"; then
+- if test "${with_boost-yes}" = yes; then
+- : ${BOOST_PATH=$NCBI/boost}
+- else
++ if test "${with_boost-yes}" != yes; then
+ BOOST_PATH=$with_boost
+ fi
+ if test -d "$BOOST_PATH"; then
+@@ -4644,17 +4773,22 @@
+ if test -d `echo $BOOST_INCLUDE | sed -e 's/^-I//'`/boost-${ncbi_cv_lib_boost_version}/boost; then
+ BOOST_INCLUDE=$BOOST_INCLUDE/boost-${ncbi_cv_lib_boost_version}
+ fi
+- case "$ncbi_compiler" in
+- MIPSPRO)
++ case "$compiler:$ncbi_compiler_ver" in
++ MIPSpro*)
+ BOOST_INCLUDE="$BOOST_INCLUDE $BOOST_INCLUDE/boost/compatibility/cpp_c_headers"
+ ;;
+- WORKSHOP)
++ WorkShop*)
+ # Boost.Test's macros yield a *lot* of spurious "should not initialize
+ # a non-const reference with a temporary" warnings, to the point of
+ # overwhelming the compiler in some cases; turn them off altogether
+ # when using Boost at all.
+ BOOST_INCLUDE="$BOOST_INCLUDE -erroff=reftotemp"
+ ;;
++ GCC*:4[[7-9]]* | GCC*:5*)
++ # Some portions of Boost also have a lot of "unused" typedefs
++ # from concept checking.
++ BOOST_INCLUDE="$BOOST_INCLUDE -Wno-unused-local-typedefs"
++ ;;
+ esac
+ case "$ncbi_cv_lib_boost_version" in
+ 0_* | 1_[[0-9]] | 1_[[0-9]]_* | 1_[[0-2]][[0-9]] | 1_[[0-2]][[0-9]]_* ) ;;
+@@ -4666,7 +4800,7 @@
+ fi
+ with_boost=no
+ ;;
+- 1_3[[5-9]] | 1_3[[5-9]]_* | 1_4* | 1_5[[0-2]] | 1_5[[0-2]]_* ) ;;
++ 1_3[[5-9]] | 1_3[[5-9]]_* | 1_4* | 1_5[[0-3]] | 1_5[[0-3]]_* ) ;;
+ '' ) with_boost=no ;;
+ * )
+ AC_MSG_WARN(
+@@ -4751,7 +4885,9 @@
+ BOOST_REGEX_STATIC_LIBS=$BOOST_REGEX_LIBS
+ fi
+
+- AC_CACHE_CHECK([for Boost.Regex in $BOOST_PATH], ncbi_cv_lib_boost_regex,
++ in_path=${BOOST_PATH:+ in $BOOST_PATH}
++
++ AC_CACHE_CHECK([for Boost.Regex$in_path], ncbi_cv_lib_boost_regex,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BOOST_LIBPATH $BOOST_REGEX_LIBS $RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4759,7 +4895,7 @@
+ [[throw boost::regex_error(boost::regex_constants::error_stack);]])],
+ [ncbi_cv_lib_boost_regex=yes], [ncbi_cv_lib_boost_regex=no])])
+
+- AC_CACHE_CHECK([for Boost.Spirit in $BOOST_PATH], ncbi_cv_lib_boost_spirit,
++ AC_CACHE_CHECK([for Boost.Spirit$in_path], ncbi_cv_lib_boost_spirit,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4774,7 +4910,7 @@
+ BOOST_SYSTEM_STATIC_LIBS=$BOOST_SYSTEM_LIBS
+ fi
+
+- AC_CACHE_CHECK([for Boost.System in $BOOST_PATH], ncbi_cv_lib_boost_system,
++ AC_CACHE_CHECK([for Boost.System$in_path], ncbi_cv_lib_boost_system,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BOOST_LIBPATH $BOOST_SYSTEM_LIBS $RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4785,6 +4921,24 @@
+ BOOST_SYSTEM_LIBS=
+ BOOST_SYSTEM_STATIC_LIBS=])])
+
++ boost_fs_lib=-lboost_filesystem${BOOST_TAG}
++ if test -f "$BOOST_LIBPATH_/libboost_filesystem${BOOST_TAG}-static.a"; then
++ boost_fs_static_lib=-lboost_filesystem${BOOST_TAG}-static
++ else
++ boost_fs_static_lib=$boost_fs_lib
++ fi
++ BOOST_FILESYSTEM_LIBS="$boost_fs_lib $BOOST_SYSTEM_LIBS"
++ BOOST_FILESYSTEM_STATIC_LIBS="$boost_fs_static_lib $BOOST_SYSTEM_STATIC_LIBS"
++
++ AC_CACHE_CHECK([for Boost.Filesystem$in_path], ncbi_cv_lib_boost_filesystem,
++ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
++ LIBS="$BOOST_LIBPATH $BOOST_FILESYSTEM_LIBS $RT_LIBS $orig_LIBS"
++ [AC_LINK_IFELSE(
++ [AC_LANG_PROGRAM([[#include <boost/filesystem.hpp>]],
++ [[return boost::filesystem::portable_name("foo");]])],
++ [ncbi_cv_lib_boost_filesystem=yes],
++ [ncbi_cv_lib_boost_filesystem=no])])
++
+ BOOST_TEST_PEM_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}
+ if test -f "$BOOST_LIBPATH_/libboost_prg_exec_monitor${BOOST_TAG}-static.a"; then
+ BOOST_TEST_PEM_STATIC_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}-static
+@@ -4813,7 +4967,7 @@
+ BOOST_TEST_TEM_LIBS=$BOOST_TEST_TEM_STATIC_LIBS
+ BOOST_TEST_UTF_LIBS=$BOOST_TEST_UTF_STATIC_LIBS
+
+- AC_CACHE_CHECK([for Boost.Test in $BOOST_PATH], ncbi_cv_lib_boost_test,
++ AC_CACHE_CHECK([for Boost.Test$in_path], ncbi_cv_lib_boost_test,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$RT_LIBS $orig_LIBS"
+ found=
+@@ -4853,7 +5007,7 @@
+ BOOST_THREAD_STATIC_LIBS=$BOOST_THREAD_LIBS
+ fi
+
+- AC_CACHE_CHECK([for Boost.Threads in $BOOST_PATH], ncbi_cv_lib_boost_thread,
++ AC_CACHE_CHECK([for Boost.Threads$in_path], ncbi_cv_lib_boost_thread,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BOOST_LIBPATH $BOOST_THREAD_LIBS $RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4864,12 +5018,25 @@
+ BOOST_INCLUDE=
+ BOOST_LIBPATH=
+ BOOST_TAG=
++ ncbi_cv_lib_boost_filesystem=no
+ ncbi_cv_lib_boost_regex=no
+ ncbi_cv_lib_boost_spirit=no
++ ncbi_cv_lib_boost_system=no
+ ncbi_cv_lib_boost_test=no
+ ncbi_cv_lib_boost_thread=no
+ fi
+
++if test "$ncbi_cv_lib_boost_filesystem" != "no"; then
++ dnl AC_DEFINE(HAVE_BOOST_FILESYSTEM, 1,
++ dnl [Define to 1 if the `Boost.Filesystem' library is available.])
++ NCBI_PACKAGE(Boost.Filesystem)
++else
++ boost_fs_lib=
++ boost_fs_static_lib=
++ BOOST_FILESYSTEM_LIBS=
++ BOOST_FILESYSTEM_STATIC_LIBS=
++fi
++
+ if test "$ncbi_cv_lib_boost_regex" != "no"; then
+ AC_DEFINE(HAVE_BOOST_REGEX, 1,
+ [Define to 1 if the `Boost.Regex' library is available.])
+@@ -4927,7 +5094,10 @@
+
+ ## NCBI C Toolkit
+ if test "$with_ncbi_c" != "no" ; then
+- NCBI_C_PATH=${NCBI_C_PATH:="$NCBI"}
++ if test "${with_ncbi_c-yes}" != yes; then
++ NCBI_C_PATH=$with_ncbi_c
++ fi
++ : ${NCBI_C_PATH="$NCBI"}
+ if test "$ncbi_compiler" = ICC -a -d "$NCBI_C_PATH/ncbi_icc"; then
+ NCBI_C_PATH=$NCBI_C_PATH/ncbi_icc
+ fi
+@@ -4949,7 +5119,8 @@
+ NCBI_C_ncbi="-lncbi"
+ fi
+ NCBI_C_LIBPATH="-L$NCBI_C_LIBPATH"
+- AC_CACHE_CHECK([for the NCBI C toolkit in $NCBI_C_PATH], ncbi_cv_lib_ctools,
++ AC_CACHE_CHECK([for the NCBI C toolkit${NCBI_C_PATH:+ in $NCBI_C_PATH}],
++ ncbi_cv_lib_ctools,
+ [CPPFLAGS="$NCBI_C_INCLUDE $orig_CPPFLAGS"
+ LIBS="$NCBI_C_LIBPATH $NCBI_C_ncbi $NETWORK_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -5000,11 +5171,7 @@
+
+ ## OpenGL
+ if test "$with_opengl" != "no"; then
+- if test "${with_opengl-yes}" = yes; then
+- if test -d $NCBI/MesaGL; then
+- : ${OPENGL_PATH=$NCBI/MesaGL}
+- fi
+- else
++ if test "${with_opengl-yes}" != yes; then
+ OPENGL_PATH=$with_opengl
+ fi
+ if test -d "$OPENGL_PATH"; then
+@@ -5101,7 +5268,6 @@
+ else
+ OSMESA_STATIC_LIBS=$OSMESA_LIBS
+ fi
+- : ${GLUT_PATH=$NCBI/glut}
+ if test "$with_glut" != "no"; then
+ if test "${with_glut-yes}" != "yes"; then
+ GLUT_PATH=$with_glut
+@@ -5121,7 +5287,6 @@
+ NCBI_MISSING_PACKAGE(glut)
+ fi
+ fi
+- : ${GLEW_PATH=$NCBI/glew}
+ if test "$with_glew" != "no"; then
+ if test "${with_glew-yes}" != "yes"; then
+ GLEW_PATH=$with_glew
+@@ -5214,7 +5379,7 @@
+ : ${with_wxwidgets_ucs=no}
+ if test "$with_wxwidgets" != "no" ; then
+ case "$with_wxwidgets" in
+- yes | "" ) : ${WXWIDGETS_PATH=$NCBI/wxwidgets} ;;
++ yes | "" ) ;;
+ * ) WXWIDGETS_PATH=$with_wxwidgets ;;
+ esac
+ if test -d "$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
+@@ -5283,12 +5448,13 @@
+ libsed=$basesed
+ ;;
+ esac
+- AC_CACHE_CHECK([for wxWidgets in $WXWIDGETS_ARCH_PATH],
++ AC_CACHE_CHECK(
++ [for wxWidgets${WXWIDGETS_ARCH_PATH:+ in $WXWIDGETS_ARCH_PATH}],
+ ncbi_cv_lib_wxwidgets,
+ [if test -x "$wxconf" ; then
+ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
+ NCBI_RPATHIFY_OUTPUT(WXWIDGETS_LIBS, ["$wxconf" $wxcfflags --libs],
+- [$libsed; ])
++ [$libsed; s/ -lm / /g;])
+
+ CPPFLAGS="$WXWIDGETS_INCLUDE $orig_CPPFLAGS"
+ LIBS="$WXWIDGETS_LIBS $orig_LIBS"
+@@ -5315,12 +5481,12 @@
+ else
+ NCBI_PACKAGE(wxWidgets)
+ case "`"$wxconf" $wxcfflags --version`" in
+- 2.[[89]].* | 2.[[0-9]][[0-9]]* )
+- NCBI_PACKAGE(wx2.8)
+- wxlibs=std,richtext,aui
++ 1.* | 2.[[0-7]].*)
++ wxlibs=std
+ ;;
+ *)
+- wxlibs=std
++ NCBI_PACKAGE(wx2.8)
++ wxlibs=std,richtext,aui,propgrid
+ ;;
+ esac
+ # The "yes" may have been cached; get the actual settings again if needed
+@@ -5328,9 +5494,9 @@
+ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
+ fi
+ NCBI_RPATHIFY_OUTPUT(WXWIDGETS_LIBS, [$wxconf $wxcfflags --libs $wxlibs],
+- [$libsed; ])
++ [$libsed; s/ -lm / /g;])
+ WXWIDGETS_STATIC_LIBS=`"$wxconf" $wxcfflags --libs --static $wxlibs \
+- 2>/dev/null | sed -e "$basesed"`
++ 2>/dev/null | sed -e "$basesed; s/ -lm / /g;"`
+ if test -n "$WXWIDGETS_STATIC_LIBS"; then
+ # Allow direct use of underlying libraries with strict linkers
+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS `echo $WXWIDGETS_STATIC_LIBS | sed -e 's/.*\.a *//'`"
+@@ -5350,7 +5516,7 @@
+ ## In-house Fast-CGI library
+ if test "$with_fastcgi" != "no" ; then
+ case "$with_fastcgi" in
+- yes | "" ) : ${FASTCGI_PATH:="$NCBI/fcgi-current"} ;;
++ yes | "" ) ;;
+ */* ) FASTCGI_PATH=$with_fastcgi ;;
+ * ) FASTCGI_PATH=$NCBI/fcgi-${with_fastcgi} ;;
+ esac
+@@ -5366,7 +5532,8 @@
+ NCBI_RPATHIFY(FASTCGI_LIBS, $FASTCGI_LIBDIR, [ -lfcgi $NETWORK_LIBS])
+ FASTCGI_OBJS="fcgibuf"
+ LIBS="$FASTCGI_LIBS $orig_LIBS"
+- AC_CACHE_CHECK([for FastCGI libraries in $FASTCGI_PATH], ncbi_cv_lib_fcgi,
++ AC_CACHE_CHECK([for FastCGI libraries${FASTCGI_PATH:+ in $FASTCGI_PATH}],
++ ncbi_cv_lib_fcgi,
+ [CPPFLAGS="$FASTCGI_INCLUDE $orig_CPPFLAGS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+ [[#include <fcgiapp.h>]],
+@@ -5416,7 +5583,11 @@
+ else
+ with_included_sss=no
+ fi
++ if test "${with_sss-yes}" = yes; then
+ NCBI_SSS_PATH=${NCBI_SSS_PATH:="$NCBI/sss/BUILD"}
++ else
++ NCBI_SSS_PATH=$with_sss
++ fi
+ NCBI_SSS_INCLUDE=${NCBI_SSS_INCLUDE:="$NCBI_SSS_PATH/include"}
+ if test -z "$NCBI_SSS_LIBPATH" ; then
+ NCBI_SSS_LIBPATH="${NCBI_SSS_PATH}/lib/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"
+@@ -5424,7 +5595,8 @@
+ NCBI_SSS_LIBPATH="${NCBI_SSS_LIBPATH}mt"
+ fi
+ fi
+- AC_MSG_CHECKING([for NCBI SSS directories in $NCBI_SSS_PATH])
++ AC_MSG_CHECKING(
++ [for NCBI SSS directories${NCBI_SSS_PATH:+ in $NCBI_SSS_PATH}])
+ if test "$with_included_sss" = "yes"; then
+ AC_MSG_RESULT([yes]) # duh
+ elif test ! -d "${NCBI_SSS_LIBPATH}" -o ! -d "${NCBI_SSS_INCLUDE}" ; then
+@@ -5510,7 +5682,6 @@
+
+ # SP
+ if test "$with_sp" != "no" ; then
+- SP_PATH=${SP_PATH:="$NCBI/SP"}
+ if test -n "$SP_INCLUDE"; then
+ SP_GENERIC="$SP_INCLUDE/../generic"
+ else
+@@ -5520,7 +5691,7 @@
+ if test -z "$SP_LIBPATH" ; then
+ SP_LIBPATH="${SP_PATH}/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
+ fi
+- AC_MSG_CHECKING([for SP directories in $SP_PATH])
++ AC_MSG_CHECKING([for SP directories${SP_PATH:+ in $SP_PATH}])
+ if test ! -d "${SP_LIBPATH}" -o ! -d "${SP_INCLUDE}" ; then
+ AC_MSG_RESULT([no])
+ NCBI_MISSING_PACKAGE(sp)
+@@ -5558,19 +5729,13 @@
+
+
+ ## ORBacus CORBA
+-if test "${with_orbacus:-yes}" = yes; then
+- if test -d $NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT; then
+- : ${ORBACUS_PATH=$NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT}
+- else
+- : ${ORBACUS_PATH=$NCBI/corba/OB-4.0.1}
+- fi
+-elif test "$with_orbacus" != no; then
++if test "$with_orbacus" != no; then
++ if test "$with_orbacus" != yes; then
+ ORBACUS_PATH=$with_orbacus
+ fi
+ if test -d "$ORBACUS_PATH"; then
+ NCBI_FIX_DIR(ORBACUS_PATH)
+ fi
+-if test "$with_orbacus" != no; then
+ fullpath=${ORBACUS_PATH}/${DEBUG_SFX}${mt_sfx}${bit64_sfx}
+ if test -f ${fullpath}/inc/OB/Config.h ; then
+ : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include -I$fullpath/inc"}
+@@ -5594,7 +5759,8 @@
+ LIBIMR=
+ ;;
+ esac
+- AC_CACHE_CHECK([for ORBacus in $ORBACUS_PATH], ncbi_cv_lib_orbacus,
++ AC_CACHE_CHECK([for ORBacus${ORBACUS_PATH:+ in $ORBACUS_PATH}],
++ ncbi_cv_lib_orbacus,
+ [CPPFLAGS="$ORBACUS_INCLUDE $orig_CPPFLAGS"
+ LIBS="$ORBACUS_LIBPATH $LIBOB $NETWORK_LIBS $DL_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -5633,7 +5799,7 @@
+
+ if test "$with_icu" != "no" ; then
+ case "$with_icu" in
+- yes | "" ) : ${ICU_PATH=$NCBI/icu} ;;
++ yes | "" ) ;;
+ * ) ICU_PATH=$with_icu ;;
+ esac
+ if test -d "$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
+@@ -5648,7 +5814,8 @@
+ ICU_BINPATH=${ICU_BINPATH:="$ICU_ARCH_PATH/bin"}
+ ICU_LIBPATH=${ICU_LIBPATH:="$ICU_ARCH_PATH/lib"}
+ ICU_INCLUDE=
+- AC_CACHE_CHECK([for ICU in $ICU_ARCH_PATH], ncbi_cv_lib_icu,
++ AC_CACHE_CHECK([for ICU${ICU_ARCH_PATH:+ in $ICU_ARCH_PATH}],
++ ncbi_cv_lib_icu,
+ [ICU_CONFIG=`$ICU_BINPATH/icu-config --bindir 2>/dev/null`/icu-config
+ if test -x "$ICU_CONFIG" ; then
+ ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
+@@ -5690,9 +5857,6 @@
+
+
+ ### XML/XSL libraries
+-if test -d "$NCBI/expat/include"; then
+- : ${EXPAT_PATH=$NCBI/expat}
+-fi
+ NCBI_CHECK_THIRD_PARTY_LIB(expat,
+ AC_LANG_PROGRAM([#include <expat.h>],
+ [XML_Parser parser = XML_ParserCreate("utf-8");]))
+@@ -5701,7 +5865,6 @@
+ else
+ EXPAT_STATIC_LIBS=${EXPAT_LIBS}
+ fi
+-: ${SABLOT_PATH=$NCBI/Sablot}
+ vpath="$SABLOT_PATH/${compiler_vpfx}build"
+ test -d "$vpath" && SABLOT_PATH=$vpath
+ if test -d "$SABLOT_PATH"; then
+@@ -5718,7 +5881,6 @@
+ SABLOT_STATIC_LIBS=${SABLOT_LIBS}
+ fi
+
+-: ${LIBXML_PATH=$NCBI/libxml}
+ # test -d "$LIBXML_PATH" || LIBXML_PATH=`xml2-config --prefix 2>/dev/null`
+ if test "$with_libxml" != "no"; then
+ case "$with_libxml" in
+@@ -5813,7 +5975,6 @@
+ LIBEXSLT_STATIC_LIBS=${LIBEXSLT_LIBS}
+ fi
+
+-: ${XERCES_PATH=$NCBI/xerces}
+ if test "$with_xerces" != no; then
+ if test "${with_xerces-yes}" != yes; then
+ XERCES_PATH=$with_xerces
+@@ -5838,7 +5999,7 @@
+ NCBI_FIX_DIR(XERCES_LIBPATH)
+ fi
+ fi
+- if test -d $XERCES_PATH; then
++ if test -d "$XERCES_PATH"; then
+ in_path=" in $XERCES_PATH"
+ : ${XERCES_INCLUDE=-I$XERCES_PATH/include}
+ : ${XERCES_LIBPATH=$XERCES_PATH/lib}
+@@ -5875,7 +6036,6 @@
+ XERCES_STATIC_LIBS=
+ fi
+
+-: ${XALAN_PATH=$NCBI/xalan}
+ if test "$with_xalan" != no; then
+ if test "${with_xalan-yes}" != yes; then
+ XALAN_PATH=$with_xalan
+@@ -5900,7 +6060,7 @@
+ NCBI_FIX_DIR(XALAN_LIBPATH)
+ fi
+ fi
+- if test -d $XALAN_PATH; then
++ if test -d "$XALAN_PATH"; then
+ in_path=" in $XALAN_PATH"
+ : ${XALAN_INCLUDE=-I$XALAN_PATH/include}
+ : ${XALAN_LIBPATH=$XALAN_PATH/lib}
+@@ -5937,7 +6097,6 @@
+
+ test -d SunWS_cache && rm -r SunWS_cache
+
+-: ${ZORBA_PATH=$NCBI/zorba}
+ if test "$with_zorba" != no; then
+ if test "${with_zorba-yes}" != yes; then
+ ZORBA_PATH=$with_zorba
+@@ -5967,7 +6126,7 @@
+ ZORBA_PATH=`$ZORBA_CONFIG --prefix`
+ : ${ZORBA_INCLUDE=`$ZORBA_CONFIG --cppflags`}
+ fi
+- if test -d $ZORBA_PATH; then
++ if test -d "$ZORBA_PATH"; then
+ in_path=" in $ZORBA_PATH"
+ : ${ZORBA_INCLUDE=-I$ZORBA_PATH/include}
+ : ${ZORBA_LIBPATH=$ZORBA_PATH/lib}
+@@ -6010,7 +6169,7 @@
+
+ ### SQLite
+ case "$with_sqlite3" in
+- yes | '' ) : ${SQLITE3_PATH=$NCBI/sqlite3} ;;
++ yes | '' ) ;;
+ * ) SQLITE3_PATH=$with_sqlite3 ;;
+ esac
+
+@@ -6048,7 +6207,6 @@
+ ### OEChem
+ # somewhat kludgish, as we now wanto to add in oeiupac and oedepict,
+ # which depend on oechem....
+-: ${OECHEM_PATH=$NCBI/oechem}
+ NCBI_CHECK_THIRD_PARTY_LIB(oechem,
+ AC_LANG_PROGRAM([#include <oechem.h>],
+ [OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive();]),
+@@ -6091,7 +6249,7 @@
+
+ ### muParser
+ case "$with_muparser" in
+- yes | '' ) : ${MUPARSER_PATH=$NCBI/muParser} ;;
++ yes | '' ) ;;
+ * ) MUPARSER_PATH=$with_muparser ;;
+ esac
+
+@@ -6111,7 +6269,7 @@
+
+ ### hdf5
+ case "$with_hdf5" in
+- yes | '' ) : ${HDF5_PATH=$NCBI/hdf5} ;;
++ yes | '' ) ;;
+ * ) HDF5_PATH=$with_hdf5 ;;
+ esac
+
+@@ -6176,7 +6334,7 @@
+ GIF_LIBS=$UNGIF_LIBS
+ fi
+
+-test -n "$x_libraries" && : ${XPM_PATH=`dirname "$x_libraries"`}
++case "$x_libraries" in */*) : ${XPM_PATH=`dirname "$x_libraries"`} ;; esac
+ NCBI_CHECK_THIRD_PARTY_LIB(Xpm,
+ AC_LANG_PROGRAM([#include <X11/xpm.h>],
+ [XpmImage image; XpmInfo info;
+@@ -6241,7 +6399,7 @@
+ fi
+
+ case "$with_ftgl" in
+- yes | '' ) : ${FTGL_PATH=$NCBI/ftgl} ;;
++ yes | '' ) ;;
+ * ) FTGL_PATH=$with_ftgl ;;
+ esac
+
+@@ -6268,7 +6426,7 @@
+
+ # Mimetic
+ case "$with_mimetic" in
+- yes | '' ) : ${MIMETIC_PATH=$NCBI/mimetic} ;;
++ yes | '' ) ;;
+ * ) MIMETIC_PATH=$with_mimetic ;;
+ esac
+ if test -d "$MIMETIC_PATH"; then
+@@ -6293,6 +6451,88 @@
+ [mimetic::MimeEntity me;])])
+
+
++# gSOAP++
++case "$with_gsoap" in
++ yes | '' ) ;;
++ * ) GSOAP_PATH=$with_gsoap ;;
++esac
++if test -d "$GSOAP_PATH"; then
++ NCBI_FIX_DIR(GSOAP_PATH)
++fi
++for d in "$GSOAP_LIBDIR" \
++ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ "$GSOAP_PATH/lib${bit64_sfx}" \
++ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}/lib" \
++ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}/lib" \
++ "$GSOAP_PATH/lib"; do
++ if test -d "$d"; then
++ GSOAP_LIBDIR=$d
++ NCBI_FIX_DIR(GSOAP_LIBDIR)
++ break
++ fi
++done
++NCBI_RPATHIFY(GSOAP_LIBPATH, $GSOAP_LIBDIR)
++
++: ${GSOAP_BINDIR=`dirname "$GSOAP_LIBDIR"`/bin}
++AC_PATH_PROG(GSOAP_SOAPCPP2, soapcpp2, [], $GSOAP_BINDIR:$PATH)
++AC_PATH_PROG(GSOAP_WSDL2H, wsdl2h, [], $GSOAP_BINDIR:$PATH)
++
++NCBI_CHECK_THIRD_PARTY_LIB_EX(gsoap, GSOAP, gsoapssl++,
++ [AC_LANG_PROGRAM([#include <stdsoap2.h>
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultsubcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultstring(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultdetail(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultsubcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultdetail(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 void SOAP_FMAC4 soap_serializeheader(struct soap*) { }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_putheader(struct soap*) { return 0; }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_getheader(struct soap*) { return 0; }
++ SOAP_FMAC3 void SOAP_FMAC4 soap_serializefault(struct soap*) { }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_putfault(struct soap*) { return 0; }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_getfault(struct soap*) { return 0; }],
++ [soap s;])],
++ $OPENSSL_LIBS $Z_LIBS)
++
++case "$with_sqlite3" in
++ yes | '' ) ;;
++ * ) SQLITE3_PATH=$with_sqlite3 ;;
++esac
++
++
++# MongoDB
++if test -d "$MONGODB_PATH"; then
++ NCBI_FIX_DIR(MONGODB_PATH)
++fi
++if test -d $MONGODB_PATH/lib${bit64_sfx}; then
++ MONGODB_LIBDIR=$MONGODB_PATH/lib${bit64_sfx}
++else
++ MONGODB_LIBDIR=$MONGODB_PATH/lib
++fi
++# need Boost rpath
++NCBI_RPATHIFY(MONGODB_LIBPATH, $MONGODB_LIBDIR)
++NCBI_CHECK_THIRD_PARTY_LIB_EX(mongodb, MONGODB, mongoclient,
++ [AC_LANG_PROGRAM([#include <mongo/client/dbclient.h>],
++ [std::vector<mongo::HostAndPort> v;
++ mongo::DBClientReplicaSet client("foo", v);
++ client.connect();])],
++ [$BOOST_LIBPATH $boost_fs_lib $BOOST_THREAD_LIBS], [],
++ [$BOOST_INCLUDE])
++# MongoDB's own library is normally static, but its supporting Boost
++# libraries might not be by default.
++if test -n "$MONGODB_LIBS"; then
++ MONGODB_STATIC_LIBS="$MONGODB_LIBPATH -lmongodb $BOOST_LIBPATH $boost_fs_static_lib $BOOST_THREAD_STATIC_LIBS"
++else
++ MONGODB_STATIC_LIBS=
++fi
++
+ ### Restore original compiler/linker flags
+ LIBS="$orig_LIBS"
+ CPPFLAGS="$orig_CPPFLAGS"
+@@ -6499,16 +6739,6 @@
+ fi
+
+
+-## Sequence Read Archive SDK, which may be attached on either the
+-## public or the internal side
+-
+-if test -f "${real_srcdir}/src/sra/sdk/Makefile.sra_macros.mk"; then
+- sra=sra
+-else
+- sra=
+-fi
+-
+-
+ ## `internal' project cluster
+
+ if test "$with_internal" = "no" \
+@@ -6781,6 +7011,7 @@
+ AC_SUBST(C_LINK)
+ AC_SUBST(TAIL_N)
+ AC_SUBST(EGREP_Q)
++AC_SUBST(LDD_R)
+
+ AC_SUBST(CFLAGS)
+ AC_SUBST(FAST_CFLAGS)
+@@ -6829,7 +7060,6 @@
+ AC_SUBST(algo)
+ AC_SUBST(app)
+ AC_SUBST(internal)
+-AC_SUBST(sra)
+
+ AC_SUBST(check)
+ AC_SUBST(CHECK_ARG)
+@@ -6865,6 +7095,7 @@
+
+ AC_SUBST(THREAD_LIBS)
+ AC_SUBST(NCBIATOMIC_LIB)
++AC_SUBST(OPENMP_FLAGS)
+ AC_SUBST(NETWORK_LIBS)
+ AC_SUBST(NETWORK_PURE_LIBS)
+ AC_SUBST(RESOLVER_LIBS)
+@@ -6902,6 +7133,8 @@
+ AC_SUBST(BOOST_INCLUDE)
+ AC_SUBST(BOOST_LIBPATH)
+ AC_SUBST(BOOST_TAG)
++AC_SUBST(BOOST_FILESYSTEM_LIBS)
++AC_SUBST(BOOST_FILESYSTEM_STATIC_LIBS)
+ AC_SUBST(BOOST_REGEX_LIBS)
+ AC_SUBST(BOOST_REGEX_STATIC_LIBS)
+ AC_SUBST(BOOST_SYSTEM_LIBS)
+@@ -6968,6 +7201,8 @@
+ AC_SUBST(SQLITE3_STATIC_LIBS)
+ AC_SUBST(FREETYPE_INCLUDE)
+ AC_SUBST(FREETYPE_LIBS)
++AC_SUBST(GSOAP_PATH)
++AC_SUBST(MONGODB_STATIC_LIBS)
+ AC_SUBST(ncbi_xreader_pubseqos)
+ AC_SUBST(ncbi_xreader_pubseqos2)
+ AC_SUBST(UNLESS_PUBSEQOS)
+@@ -7194,7 +7429,9 @@
+
+ cat << EOCONF
+ ===============================================================================
+-NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running
++NCBI C++ Toolkit documentation:
++ Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
++ Local: ./doc/public/index.html
+ For the available configuration flags run: ./configure --help
+
+ CFLAGS = $CFLAGS
+--- ncbi_cxx--12_0_0/src/build-system/aclocal.m4.ori 2014-06-23 17:36:18.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/aclocal.m4 2014-06-23 17:36:59.000000000 +0200
+@@ -1,126 +1,45 @@
+-# Hacked up in various ways, since Autoconf's version doesn't quite
+-# suit our (unusual) conventions. (Originally from status.m4)
+-m4_define([_AC_SRCPATHS],
+-[#ac_builddir=. # Useless!
+-ac_builddir=$builddir
+-dnl Base source directories on path to *input* file.
+-if test -n "$ac_file_in"; then
+- ac_dir_in=`AS_DIRNAME(["$ac_file_in"])`
++# Autoconf's _AC_SRCDIRS (from status.m4; historically _AC_SRCPATHS)
++# doesn't quite suit the C++ Toolkit's conventions; tweak it accordingly.
++m4_copy([_AC_SRCDIRS], [NCBI_ORIG__AC_SRCDIRS])
++m4_define([_AC_SRCDIRS],
++[# Base source directories on path to *input* file.
++if test -n "$ac_f"; then
++ ac_dir_in=`AS_DIRNAME(["$ac_f"])`
+ else
+ ac_dir_in=$1
+ fi
+
+-if test $ac_dir_in != .; then
+- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[[\\/]],,'`
+- # A "../" for each directory in $ac_dir_suffix.
+- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[[^\\/]]*,../,g'`
+-else
+- ac_dir_suffix= ac_top_builddir=
+-fi
++NCBI_ORIG__AC_SRCDIRS(["$ac_dir_in"])
+
+-case $srcdir in
+- .) # No --srcdir option. We are building in place.
+- ac_srcdir=.
+- if test -z "$ac_top_builddir"; then
+- ac_top_srcdir=.
+- else
+- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
+- fi ;;
+- [[\\/]]* | ?:[[\\/]]* ) # Absolute path.
+- ac_srcdir=$srcdir/$ac_dir_suffix;
+- ac_top_srcdir=$srcdir ;;
+- *) # Relative path.
+- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
+- ac_top_srcdir=$ac_top_builddir$srcdir ;;
+-esac
+-# Do not use `cd foo && pwd` to compute absolute paths, because
+-# the directories may not exist.
+-AS_SET_CATFILE([ac_abs_builddir], [$builddir], [$1])
+-AS_SET_CATFILE([ac_abs_top_builddir],
+- [$ac_abs_builddir], [${ac_top_builddir}.])
+ AS_SET_CATFILE([ac_abs_top_srcdir], [$ac_dir_in], [$real_srcdir])
+-AS_SET_CATFILE([ac_abs_srcdir], [$ac_abs_top_srcdir], [$ac_dir_suffix])
+-])# _AC_SRCPATHS
+-
++ac_builddir=$builddir
++])
+
+-# Copied from autoconf 2.59 (m4sh.m4), but rearranged to make bash a
+-# last resort due to issues with sourcing .bashrc.
+-m4_define([_AS_LINENO_PREPARE],
+-[_AS_LINENO_WORKS || {
+- # Find who we are. Look in the path if we contain no path at all
+- # relative or not.
+- case $[0] in
+- *[[\\/]]* ) as_myself=$[0] ;;
+- *) _AS_PATH_WALK([],
+- [test -r "$as_dir/$[0]" && as_myself=$as_dir/$[0] && break])
+- ;;
+- esac
+- # We did not find ourselves, most probably we were run as `sh COMMAND'
+- # in which case we are not to be found in the path.
+- if test "x$as_myself" = x; then
+- as_myself=$[0]
+- fi
+- if test ! -f "$as_myself"; then
+- AS_ERROR([cannot find myself; rerun with an absolute path])
+- fi
+- case $CONFIG_SHELL in
+- '')
+- AS_UNSET(ZSH_VERSION)
+- for as_base in sh ksh sh5 bash; do
+- _AS_PATH_WALK([/bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH],
+- [case $as_dir in
+- /*)
+- if ("$as_dir/$as_base" -c \
+- 'test -z "$ZSH_VERSION" && { _AS_LINENO_WORKS; }') 2>/dev/null
+- then
+- AS_UNSET(BASH_ENV)
+- AS_UNSET(ENV)
+- CONFIG_SHELL=$as_dir/$as_base
+- export CONFIG_SHELL
+- exec "$CONFIG_SHELL" "$[0]" ${1+"$[@]"}
+- fi;;
+- esac
+- done]);;
+- esac
+
+- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
+- # uniformly replaced by the line number. The first 'sed' inserts a
+- # line-number line before each line; the second 'sed' does the real
+- # work. The second script uses 'N' to pair each line-number line
+- # with the numbered line, and appends trailing '-' during
+- # substitution so that $LINENO is not a special case at line end.
+- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
+- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
+- sed '=' <$as_myself |
+- sed '
+- N
+- s,$,-,
+- : loop
+- s,^\([['$as_cr_digits']]*\)\(.*\)[[$]]LINENO\([[^'$as_cr_alnum'_]]\),\1\2\1\3,
+- t loop
+- s,-$,,
+- s,^[['$as_cr_digits']]*\n,,
+- ' >$as_me.lineno &&
+- chmod +x $as_me.lineno ||
+- AS_ERROR([cannot create $as_me.lineno; rerun with a POSIX shell])
+-
+- # Don't try to exec as it changes $[0], causing all sort of problems
+- # (the dirname of $[0] is not the place where we might find the
+- # original and so on. Autoconf is especially sensible to this).
+- . ./$as_me.lineno
+- # Exit status is that of the last command.
+- exit
+-}
+-])# _AS_LINENO_PREPARE
++# _AS_DETECT_BETTER_SHELL and its helper _AS_RUN (from m4sh.m4; both
++# historically part of _AS_LINENO_PREPARE) also need tweaking, to make
++# bash a last resort due to issues with sourcing .bashrc while entirely
++# avoiding zsh, which passes itself off as ksh on some systems but runs
++# parent shells' exit handlers from subshells, resulting in premature
++# cleanup of temporary files (notably confdefs.h).
++m4_copy([_AS_DETECT_BETTER_SHELL], [NCBI_ORIG__AS_DETECT_BETTER_SHELL])
++m4_copy([_AS_RUN], [NCBI_ORIG___AS_RUN])
++
++m4_define([_AS_DETECT_BETTER_SHELL],
++ [patsubst(m4_defn([NCBI_ORIG__AS_DETECT_BETTER_SHELL]),
++ [sh bash ksh sh5], [sh ksh sh5 bash])])
++m4_define([_AS_RUN],
++[m4_divert_once([M4SH-SANITIZE], [AS_UNSET(ZSH_VERSION)])dnl
++NCBI_ORIG___AS_RUN([test -z "${ZSH_VERSION+set}" || exit $?; $1], [$2])])
+
+
+ # One more hack: suppress PACKAGE_*, as we don't use them and some
+ # third-party libraries expose their corresponding settings, leading
+ # to preprocessor warnings.
+-m4_define([NCBI_ORIG_ACDU], m4_defn([AC_DEFINE_UNQUOTED]))
++m4_copy([AC_DEFINE_UNQUOTED], [NCBI_ORIG_AC_DEFINE_UNQUOTED])
+ m4_define([AC_DEFINE_UNQUOTED],
+ [ifelse(m4_substr([$1], 0, 8), [PACKAGE_], [],
+- [NCBI_ORIG_ACDU($@)])])
++ [NCBI_ORIG_AC_DEFINE_UNQUOTED($@)])])
+
+
+ AC_DEFUN(NCBI_FIX_DIR,
+@@ -158,7 +77,7 @@
+ AC_MSG_WARN([Proceeding without questions per --without-caution]) ;;
+ * )
+ echo "$1 [[y/N]]"
+- read answer
++ read answer <& AS_ORIGINAL_STDIN_FD
+ case "$answer" in
+ [[Yy]]* ) AC_MSG_WARN([Proceeding at your own risk...]) ;;
+ * ) AC_MSG_ERROR([Configuration has been canceled by user.]) ;;
+--- ncbi_cxx--12_0_0/src/build-system/config.h.in.ori 2014-06-23 17:38:56.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/config.h.in 2014-06-23 17:39:04.000000000 +0200
+@@ -98,6 +98,9 @@
+ /* Define to 1 if you have the `getaddrinfo' function. */
+ #undef HAVE_GETADDRINFO
+
++/* Define to 1 if you have the `getgrouplist' function. */
++#undef HAVE_GETGROUPLIST
++
+ /* If you have the `gethostbyaddr_r' function, define to the number of
+ arguments it takes (normally 7 or 8). */
+ #undef HAVE_GETHOSTBYADDR_R
+@@ -176,9 +179,6 @@
+ /* Define to 1 if you have `ios(_base)::register_callback'. */
+ #undef HAVE_IOS_REGISTER_CALLBACK
+
+-/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
+-#undef HAVE_IS_SORTED
+-
+ /* Define to 1 if you have the `lchown' function. */
+ #undef HAVE_LCHOWN
+
+@@ -234,6 +234,9 @@
+ /* Define to 1 if libgnutls is available. */
+ #undef HAVE_LIBGNUTLS
+
++/* Define to 1 if libgsoapssl++ is available. */
++#undef HAVE_LIBGSOAP
++
+ /* Define to 1 if libhdf5_cpp is available. */
+ #undef HAVE_LIBHDF5
+
+@@ -260,6 +263,9 @@
+ /* Define to 1 if libmimetic is available. */
+ #undef HAVE_LIBMIMETIC
+
++/* Define to 1 if libmongoclient is available. */
++#undef HAVE_LIBMONGODB
++
+ /* Define to 1 if libmuparser is available. */
+ #undef HAVE_LIBMUPARSER
+
+@@ -382,9 +388,6 @@
+ /* Define to 1 if `min'/`max' templates are not implemented. */
+ #undef HAVE_NO_MINMAX_TEMPLATE
+
+-/* Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword. */
+-#undef HAVE_NULLPTR
+-
+ /* Define to 1 if ODBC libraries are available. */
+ #undef HAVE_ODBC
+
+@@ -799,37 +802,37 @@
+ by a signal. */
+ #undef SELECT_UPDATES_TIMEOUT
+
+-/* The size of a `char', as computed by sizeof. */
++/* The size of `char', as computed by sizeof. */
+ #undef SIZEOF_CHAR
+
+-/* The size of a `double', as computed by sizeof. */
++/* The size of `double', as computed by sizeof. */
+ #undef SIZEOF_DOUBLE
+
+-/* The size of a `float', as computed by sizeof. */
++/* The size of `float', as computed by sizeof. */
+ #undef SIZEOF_FLOAT
+
+-/* The size of a `int', as computed by sizeof. */
++/* The size of `int', as computed by sizeof. */
+ #undef SIZEOF_INT
+
+-/* The size of a `long', as computed by sizeof. */
++/* The size of `long', as computed by sizeof. */
+ #undef SIZEOF_LONG
+
+-/* The size of a `long double', as computed by sizeof. */
++/* The size of `long double', as computed by sizeof. */
+ #undef SIZEOF_LONG_DOUBLE
+
+-/* The size of a `long long', as computed by sizeof. */
++/* The size of `long long', as computed by sizeof. */
+ #undef SIZEOF_LONG_LONG
+
+-/* The size of a `short', as computed by sizeof. */
++/* The size of `short', as computed by sizeof. */
+ #undef SIZEOF_SHORT
+
+-/* The size of a `size_t', as computed by sizeof. */
++/* The size of `size_t', as computed by sizeof. */
+ #undef SIZEOF_SIZE_T
+
+-/* The size of a `void*', as computed by sizeof. */
++/* The size of `void*', as computed by sizeof. */
+ #undef SIZEOF_VOIDP
+
+-/* The size of a `__int64', as computed by sizeof. */
++/* The size of `__int64', as computed by sizeof. */
+ #undef SIZEOF___INT64
+
+ /* Define to 1 if the stack grows down. */
+@@ -870,5 +873,5 @@
+ /* Define to empty if `const' does not conform to ANSI C. */
+ #undef const
+
+-/* Define to `unsigned' if <sys/types.h> does not define. */
++/* Define to `unsigned int' if <sys/types.h> does not define. */
+ #undef size_t
+--- ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h.ori 2014-06-23 17:40:40.000000000 +0200
++++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h 2014-06-23 17:40:57.000000000 +0200
+@@ -1,4 +1,4 @@
+-/* $Id: ncbiconf_xcode.h 361821 2012-05-04 14:28:13Z ucko $
++/* $Id$
+ * By Vlad Lebedev, NCBI (lebedev@ncbi.nlm.nih.gov)
+ *
+ * Mac OS X - xCode Build
+@@ -258,9 +258,6 @@
+ /* Define to 1 if you have `ios(_base)::register_callback'. */
+ #define HAVE_IOS_REGISTER_CALLBACK 1
+
+-/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
+-/* #undef HAVE_IS_SORTED */
+-
+ /* Define to 1 if you have the `lchown' function. */
+ /* #undef HAVE_LCHOWN */
+
+@@ -358,6 +355,9 @@
+ /* Define to 1 if you have the `lutimes' function. */
+ /* #undef HAVE_LUTIMES */
+
++/* Define to 1 if you have the `madvise' function. */
++#define HAVE_MADVISE 1
++
+ /* Define to 1 if you have the <malloc.h> header file. */
+ /* #undef HAVE_MALLOC_H */
+
+@@ -589,15 +589,15 @@
+ /* Define to 1 if you have the <windows.h> header file. */
+ /* #undef HAVE_WINDOWS_H */
+
++/* Define to 1 if you have the `writev' function. */
++#define HAVE_WRITEV 1
++
+ /* Define to 1 if the system has the type `wstring'. */
+ #define HAVE_WSTRING 1
+
+ /* Define to 1 if wxWidgets is available. */
+ /* #undef HAVE_WXWIDGETS */
+
+-/* Define to 1 if nullptr keyword is available. */
+-/* #undef HAVE_NULLPTR */
+-
+ /* Define as const if the declaration of iconv() needs const. */
+ #if MAC_OS_X_VERSION_MIN_REQUIRED >= 1050 /* MAC_OS_X_VERSION_10_5 */
+ # define ICONV_CONST
+@@ -694,7 +694,7 @@
+ /* Define to empty if `const' does not conform to ANSI C. */
+ /* #undef const */
+
+-/* Define to `unsigned' if <sys/types.h> does not define. */
++/* Define to `unsigned int' if <sys/types.h> does not define. */
+ /* #undef size_t */
+
+ /*
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 3b19a93..64e8c23 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -26,12 +26,14 @@ IUSE="
debug static-libs static threads pch
test wxwidgets odbc
berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif
- glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
+ glut hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X"
+# removed IUSE=gnutls due to Gentoo bug #421777
#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
KEYWORDS=""
# sys-libs/db should be compiled with USE=cxx
+# dropped 'gnutls? ( net-libs/gnutls[lzo] )' from DEPEND due to Gentoo bug #421777
DEPEND="
berkdb? ( sys-libs/db:4.3[cxx] )
ftds? ( dev-db/freetds )
@@ -40,7 +42,6 @@ DEPEND="
sqlite? ( dev-db/sqlite )
sqlite3? ( dev-db/sqlite:3 )
mysql? ( virtual/mysql )
- gnutls? ( net-libs/gnutls[lzo] )
ssl? ( dev-libs/openssl )
fltk? ( x11-libs/fltk )
opengl? ( virtual/opengl )
@@ -112,6 +113,7 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-creaders-linking.patch
"${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
"${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
+ "${FILESDIR}"/${P}-support-autoconf-2.60.patch
)
epatch ${PATCHES[@]}
@@ -120,8 +122,10 @@ src_prepare() {
cd src/build-system || die
# eautoreconf
eautoconf
+ # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
}
+# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
src_configure() {
local myconf=()
#--without-optimization turn off optimization flags in non-debug mode
@@ -214,7 +218,7 @@ src_configure() {
$(use_with pch)
$(use_with lzo lzo "${EPREFIX}/usr")
$(use_with pcre pcre "${EPREFIX}/usr")
- $(use_with gnutls gnutls "${EPREFIX}/usr")
+# $(use_with gnutls gnutls "${EPREFIX}/usr")
$(use_with ssl openssl "${EPREFIX}/usr")
$(use_with ftds ftds "${EPREFIX}/usr")
$(use_with mysql mysql "${EPREFIX}/usr")
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-06-23 20:34 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2014-06-23 20:34 UTC (permalink / raw
To: gentoo-commits
commit: 8e4a566fecc849dd4e007fc85b6ebfd423d637ae
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jun 23 20:34:11 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jun 23 20:34:11 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8e4a566f
add an extra patch for configure until we find a way to ensure user has autoconf-2.59 or for ncbi-tools++-12.0.0 may have autoconf-2.60
---
.../files/ncbi-tools++-12.0.0-configure.patch | 46073 +++++++++++++++++++
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 16 +-
2 files changed, 46083 insertions(+), 6 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch
new file mode 100644
index 0000000..0d4bd39
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch
@@ -0,0 +1,46073 @@
+--- ncbi_cxx--12_0_0/src/build-system/configure.ac.ori 2014-06-23 17:35:47.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/configure.ac 2014-06-23 17:36:41.000000000 +0200
+@@ -1,5 +1,5 @@
+ #############################################################################
+-# $Id: configure.ac 398256 2013-05-03 19:14:07Z rafanovi $
++# $Id$
+ # Derived from configure.in version 1.173.
+ # ==========================================================================
+ #
+@@ -38,7 +38,7 @@
+ #
+ #############################################################################
+
+-AC_PREREQ(2.59)
++AC_PREREQ(2.60)
+
+ dnl Early setup, most crucially for locking. The diversion magic lets
+ dnl this occur before AC_INIT, which already interferes with other
+@@ -71,7 +71,7 @@
+ python, perl, jni, sqlite3, mimetic, sge, icu, sp, expat,
+ sablot, libxml, libxslt, libexslt, xerces, xalan, zorba,
+ oechem, muparser, hdf5, gif, jpeg, png, tiff, xpm,
+- magic, curl],
++ magic, curl, gsoap, mongodb],
+ [if test "${[with_]X-no}" != "no"; then
+ AC_MSG_ERROR([incompatible options: --with-]X[ but --without-3psw])
+ else
+@@ -143,6 +143,8 @@
+ [ --with-bin-release build executables suitable for public release])
+ AC_ARG_WITH(mt,
+ [ --with-mt compile in a MultiThread-safe manner])
++AC_ARG_WITH(openmp,
++ [ --with-openmp enable OpenMP extensions for all projects])
+ AC_ARG_WITH(64,
+ [ --with-64 compile to 64-bit code])
+ AC_ARG_WITH(universal,
+@@ -220,11 +222,15 @@
+
+ ## NCBI packages
+ AC_ARG_WITH(ncbi-c,
++ [ --with-ncbi-c=DIR use NCBI C Toolkit installation in DIR])
++AC_ARG_WITH(ncbi-c2,
+ [ --without-ncbi-c do not use NCBI C Toolkit])
+ AC_ARG_WITH(sss,
++ [ --with-sss=DIR use NCBI SSS installation in DIR])
++AC_ARG_WITH(sss2,
+ [ --without-sss do not use NCBI SSS libraries])
+ AC_ARG_WITH(sssutils,
+- [ --without-sssutils do not use NCBI SSS UTIL library])
++ [ --without-utils do not use NCBI SSS UTIL library])
+ AC_ARG_WITH(sssdb,
+ [ --without-sssdb do not use NCBI SSS DB library])
+ AC_ARG_WITH(included-sss,
+@@ -439,6 +445,14 @@
+ [ --with-mimetic=DIR use libmimetic installation in DIR])
+ AC_ARG_WITH(mimetic2,
+ [ --without-mimetic do not use libmimetic])
++AC_ARG_WITH(gsoap,
++ [ --with-gsoap=DIR use gSOAP++ installation in DIR])
++AC_ARG_WITH(gsoap2,
++ [ --without-gsoap do not use gSOAP++])
++AC_ARG_WITH(mongodb,
++ [ --with-mongodb=DIR use MongoDB installation in DIR])
++AC_ARG_WITH(mongodb2,
++ [ --without-mongodb do not use MongoDB])
+ AC_ARG_WITH(3psw,
+ [ --with-3psw=std:netopt favor standard (system) builds of the above pkgs.])
+ AC_ARG_WITH(3psw2,
+@@ -479,24 +493,28 @@
+ [***** See also HTML documentation in ./doc/index.html *****])
+
+
++AC_DIVERT_PUSH(PARSE_ARGS)
++dnl As of Autoconf 2.60, this needs to run too early for config.log,
++dnl to which AC_MSG_ERROR normally copies its output, to be available.
++m4_rename([AS_MESSAGE_LOG_FD], [NCBI_ORIG_ASMLFD])
+ #### Check the passed arguments against the list of available ones
+ x_with_list="\
+ debug max-debug symbols optimization profiling tcheck dll static static-exe \
+ plugin-auto-load bundles bin-release mt 64 universal exe runpath hard-runpath \
+-lfs limited-linker \
++lfs limited-linker openmp \
+ autodep suffix hostspec version execopy bincopy lib-rebuilds lib-rebuilds=ask \
+ deactivation makefile-auto-update projects flat-makefile configure-dialog \
+ check ncbi-public strip pch caution ccache distcc \
+ ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+ geo included-geo \
+ z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
+-ftds mysql orbacus odbc freetype ftgl opengl mesa glut glew glew-mx \
++ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
+ bdb python perl jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt libexslt xerces xalan zorba \
+ oechem sge muparser hdf5 \
+-gif jpeg tiff png xpm magic curl mimetic 3psw \
++gif jpeg tiff png xpm magic curl mimetic gsoap mongodb 3psw \
+ local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench x"
++serial objects dbapi app ctools gui algo internal gbench"
+
+ changequote(, )dnl
+ x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+@@ -522,7 +540,6 @@
+ case "$x_arg" in
+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
+- | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
+ AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
+ ;;
+@@ -533,12 +550,11 @@
+ | --with-universal=* | --with-tcheck=* \
+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
+- | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
+ | [[A-Z]*=*] \
+ | --with-z=* | --with-bz2=* | --with-lzo=* \
+- | --with-pcre=* \
++ | --with-pcre=* | --with-ncbi-c=* | --with-sss=* \
+ | --with-gcrypt=* | --with-gnutls=* | --with-openssl=* \
+- | --with-krb5=* | --with-curl=* \
++ | --with-krb5=* | --with-curl=* | --with-gsoap=* | --with-mongodb=* \
+ | --with-sybase-local=* | --with-wxwidgets=* | --with-mimetic=* \
+ | --with-ftds=* | --with-mysql=* | --with-fastcgi=* \
+ | --with-sqlite3=* | --with-expat=* | --with-sablot=* \
+@@ -552,7 +568,7 @@
+ | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
+ | --x-includes=* | --x-libraries=* | --with-3psw=* \
+ | --target=* | --with-runpath=* | --with-relative-runpath=* \
+- | --no-create | --no-recursion)
++ | --help | --no-create | --no-recursion)
+ ;;
+
+ * )
+@@ -560,6 +576,8 @@
+ ;;
+ esac
+ done
++m4_rename([NCBI_ORIG_ASMLFD], [AS_MESSAGE_LOG_FD])
++AC_DIVERT_POP
+
+
+ if test "$with_gbench" = "yes" ; then
+@@ -604,6 +622,13 @@
+ : ${with_optimization=no}
+ fi
+
++if test "$with_openmp" = yes; then
++ if test "$with_mt" = no; then
++ AC_MSG_ERROR([incompatible options: --without-mt but --with-openmp])
++ fi
++ : ${with_mt=yes}
++fi
++
+ #### Check for special options
+ if test "$with_extra_action" = "yes" ; then
+ AC_MSG_ERROR([--with-extra-action must have a value after =])
+@@ -649,15 +674,10 @@
+ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
+ esac
+ fi
+-if test -n "$with_projects"; then
+- case "$with_projects" in
+- /* ) abs_projects=$with_projects ;;
+- yes) abs_projects=$srcdir/projects ;;
+- * ) abs_projects=$srcdir/$with_projects ;;
+- esac
+- test -r "$abs_projects" || \
+- AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
+-fi
++# Generally save any originally specified flags.
++USER_CFLAGS=$CFLAGS
++USER_CXXFLAGS=$CXXFLAGS
++USER_LDFLAGS=$LDFLAGS
+
+ #### Always define this
+ AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
+@@ -675,6 +695,23 @@
+ #### Make some provisions for traditional operation
+ AC_PROG_INSTALL
+
++#### Point ICC at a suitable GCC version ASAP.
++case "/$CXX" in
++ */icpc )
++ if test -d /usr/local/gcc; then
++ case "`$CXX -dumpversion`:$host_cpu" in
++ *:i?86) v=4.4.5 ;;
++ ?.* | 1[[01]].* ) v=4.0.1 ;;
++ *) v=4.4.2 ;;
++ esac
++ gcc=/usr/local/gcc/$v/bin/gcc
++ if test -x $gcc; then
++ CC="$CC -gcc-name=$gcc"
++ CXX="$CXX -gcc-name=$gcc"
++ fi
++ fi
++ ;;
++esac
+
+ #### C and C++ compilers
+ AC_LANG(C++)
+@@ -987,6 +1024,30 @@
+ ;;
+ * ) NCBIATOMIC_LIB=xncbi ;;
+ esac
++ case "$compiler" in
++ GCC )
++ if $CC -v | grep clang >/dev/null; then
++ :
++ # Will allegedly support -openmp at some point, but as of 3.4,
++ # just parses it as specifying an output filename: -o penmp.
++ else
++ case "$compiler_version" in
++ [[123]]?? | 4[[01]]? ) ;;
++ * ) : ${OPENMP_FLAGS=-fopenmp} ;;
++ esac
++ fi
++ ;;
++ ICC )
++ : ${OPENMP_FLAGS=-openmp}
++ ;;
++ WorkShop* )
++ : ${OPENMP_FLAGS=-xopenmp=parallel}
++ ;;
++ esac
++ if test "$with_openmp" = yes; then
++ MT_FLAG="$MT_FLAG $OPENMP_FLAGS"
++ OPENMP_FLAGS=
++ fi
+ mt_sfx="MT"
+ NCBI_FEATURE(MT)
+ else
+@@ -994,6 +1055,7 @@
+ MT_FLAG=
+ THREAD_LIBS=
+ NCBIATOMIC_LIB=
++ OPENMP_FLAGS=
+ mt_sfx=""
+ fi
+ MT_SFX="${mt_sfx}"
+@@ -1006,6 +1068,9 @@
+ APP_LDFLAGS=
+ DLL_LDFLAGS=
+
++### Should go before any test compiler runs
++AC_GNU_SOURCE
++
+ case "$host_os:$compiler" in
+ darwin*:GCC )
+ AC_CACHE_CHECK([whether $CC supports -Wl,-rpath],
+@@ -1047,6 +1112,47 @@
+ ;;
+ esac
+
++case "$compiler:$compiler_version" in
++ GCC:4[[0-6]]? | ICC:1[[01]]?? )
++ ncbi_cv_prog_cxx_11=no
++ ncbi_cv_prog_c_99=no
++ ;;
++ ICC:* )
++ ncbi_cv_prog_c_99='-std=gnu99 -fgnu89-inline'
++ ;;
++esac
++
++AC_CACHE_CHECK([how to enable C++ '11 features in $CXX],
++ ncbi_cv_prog_cxx_11,
++ [orig_CXX=$CXX
++ ncbi_cv_prog_cxx_11=no
++ for x in -std=gnu++11 -std=gnu++0x; do
++ CXX="$orig_CXX $x"
++ AC_LINK_IFELSE([AC_LANG_PROGRAM([], [])],
++ [ncbi_cv_prog_cxx_11=$x])
++ test "x$ncbi_cv_prog_cxx_11" = "xno" || break
++ done
++ CXX=$orig_CXX])
++test "$ncbi_cv_prog_cxx_11" = no || CXX="$CXX $ncbi_cv_prog_cxx_11"
++
++AC_LANG_PUSH(C)
++AC_CACHE_CHECK([how to enable C '11 or at least '99 features in $CC],
++ ncbi_cv_prog_c_99,
++ [orig_CC=$CC
++ ncbi_cv_prog_c_99=no
++ for x in -xc99=all "-std=gnu11 -fgnu89-inline" \
++ "-std=gnu1x -fgnu89-inline" \
++ "-std=gnu99 -fgnu89-inline" \
++ "-std=gnu9x -fgnu89-inline"; do
++ CC="$orig_CC $x"
++ AC_LINK_IFELSE([AC_LANG_PROGRAM([], [])],
++ [ncbi_cv_prog_c_99=$x])
++ test "x$ncbi_cv_prog_c_99" = "xno" || break
++ done
++ CC=$orig_CC])
++AC_LANG_POP(C)
++test "$ncbi_cv_prog_c_99" = no || CC="$CC $ncbi_cv_prog_c_99"
++
+ #### Provide default environment setup for known platforms/compilers
+ DEPFLAGS="-M"
+ DEPFLAGS_POST="" # Needed for VisualAge
+@@ -1059,7 +1165,15 @@
+ ;;
+
+ solaris*:GCC )
+- CPPFLAGS="-D_XOPEN_SOURCE=500 $CPPFLAGS"
++ # On Solaris, GCC defaults to setting _XOPEN_SOURCE (to 500) only
++ # in C++ mode. Set it for C code as well to ensure consistent
++ # header behavior, taking care to match the C standard version
++ # (as enforced by <sys/feature_tests.h>).
++ case "$ncbi_cv_prog_c_99" in
++ no) CC="$CC -D_XOPEN_SOURCE=500" ;;
++ *) CC="$CC -D_XOPEN_SOURCE=600" ;;
++ esac
++
+ STRIP="@:"
+ ;;
+
+@@ -1202,11 +1316,19 @@
+ LDFLAGS="-flat_namespace $LDFLAGS"
+
+ if test "$with_ncbi_public" = yes; then
++ sdks='/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk'
++ case "$host_os" in
++ darwin?.* | darwin10.* ) # Mac OS X 10.6.x or older
+ TARGET='-mmacosx-version-min=10.5'
+- sdks='/Developer/SDKs/MacOSX10.6.sdk /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.6.sdk'
++ sdks="/Developer/SDKs/MacOSX10.6.sdk"
+ if test "$with_64:${with_universal-no}" != "yes:no"; then
+ sdks="/Developer/SDKs/MacOSX10.5.sdk $sdks"
+ fi
++ ;;
++ * )
++ TARGET='-mmacosx-version-min=10.7'
++ ;;
++ esac
+ for sdk in $sdks; do
+ if test -d "$sdk"; then
+ TARGET="-isysroot $sdk $TARGET"
+@@ -1487,8 +1609,8 @@
+ ;;
+ GCC:* )
+ DEF_FAST_FLAGS="-O3 -finline-functions -fstrict-aliasing"
+- case "$host_os" in
+- freebsd* ) ;;
++ case "$host_os:$host_cpu:$compiler_version" in
++ freebsd* | solaris*:*86*:* | *:4[[5-9]]? | *:[[5-9]]?? ) ;;
+ * ) DEF_FAST_FLAGS="$DEF_FAST_FLAGS -ffast-math" ;;
+ esac
+ if test "$with_profiling" != "yes"; then
+@@ -1587,13 +1709,9 @@
+ solaris* )
+ CONF_f_runpath="-R"
+ ;;
+- linux*:GCC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
++ linux*:[[GI]]CC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
+ CONF_f_runpath="-Wl,-rpath,"
+ ;;
+- linux*:ICC )
+- # trying to use "-Wl,-rpath," here sends "ld" to endless 100% CPU loop
+- CONF_f_runpath="-Xlinker -rpath -Xlinker "
+- ;;
+ irix*:* | linux*:KCC | *:Compaq )
+ CONF_f_runpath="-rpath "
+ ;;
+@@ -1697,8 +1815,11 @@
+ LINK="$LINK -Kc++"
+ ;;
+ ICC:1???:* )
+- APP_LDFLAGS="-static-intel $APP_LDFLAGS"
+- DLL_LDFLAGS="-static-intel -nodefaultlibs $DLL_LDFLAGS"
++ # Suppress "warning #10237: -lcilkrts linked in dynamically, static
++ # library not available" which is not a problem in practice due to
++ # as-needed linkage.
++ APP_LDFLAGS="-static-intel -diag-disable 10237 $APP_LDFLAGS"
++ DLL_LDFLAGS="-static-intel -diag-disable 10237 -nodefaultlibs $DLL_LDFLAGS"
+ # Redundant for apps, but necessary for plugins to be adequately
+ # self-contained, at least on 32-bit Linux.
+ LIBS="$LIBS -lstdc++"
+@@ -1817,18 +1938,6 @@
+
+ #### Intel compiler:: common flags and definitions
+ if test "$compiler" = "ICC" ; then
+- if test -d /usr/local/gcc; then
+- case "$compiler_version:$HOST_CPU" in
+- *:i?86) v=4.4.5 ;;
+- ???:* | 1[[01]]??:* ) v=4.0.1 ;;
+- *) v=4.4.2 ;;
+- esac
+- gcc=/usr/local/gcc/$v/bin/gcc
+- if test -x $gcc; then
+- CC="$CC -gcc-name=$gcc"
+- CXX="$CXX -gcc-name=$gcc"
+- fi
+- fi
+ if test -n "$icc_license" ; then
+ icc_CC="$CC"
+ icc_CXX="$CXX"
+@@ -2073,6 +2182,7 @@
+ fi
+
+ AC_PATH_PROG(TOUCH, touch, [], /bin:/usr/bin:$PATH)
++dnl AC_PATH_PROG(GREP, grep)
+ AC_PROG_EGREP
+ AC_MSG_CHECKING([how to run $EGREP quietly])
+ if test -z "`echo foo | $EGREP -q fo+ 2>>config.log || echo $?`"; then
+@@ -2086,6 +2196,16 @@
+
+ AC_CHECK_PROG(VALGRIND_PATH, valgrind, valgrind)
+
++AC_PATH_PROG(LDD, ldd)
++if test -n "$LDD"; then
++ AC_MSG_CHECKING([whether $LDD accepts -r])
++ if $LDD -r /bin/ls >/dev/null 2>&1; then
++ AC_MSG_RESULT(yes)
++ LDD_R="$LDD -r"
++ else
++ AC_MSG_RESULT(no)
++ fi
++fi
+
+ #### Check if "${build_root}" is defined; provide a default one
+ if test -n "${with_build_root}" ; then
+@@ -2170,9 +2290,6 @@
+ fi
+
+
+-### Should go before any test compiler runs
+-AC_GNU_SOURCE
+-
+ #### Determine whether this is implicitly a 64-bit platform
+ AC_TYPE_SIZE_T
+ if test "${with_universal-no}" = "no"; then
+@@ -2342,7 +2459,7 @@
+ fi
+ ;;
+ *:ICC )
+- runpath="$runpath -Xlinker -rpath-link -Xlinker \$(libdir)"
++ runpath="$runpath -Wl,-rpath-link,\$(libdir)"
+ ;;
+ esac
+ elif test "$with_runpath" = "yes" -o "$with_dll" != "no" ; then
+@@ -2658,15 +2775,30 @@
+ dbgrx1="$wsrx-g[^cx$wschars]*$wsrx"
+ dbgrx2="$wsrx-gx*coff[0-9+]*$wsrx"
+ optrx="$wsrx-x*O[0-9s]*$wsrx"
++ NDEB_CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ NDEB_CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ NDEB_LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+ if test "$with_symbols" = "no" ; then
+- CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+- CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+- LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ CFLAGS=$NDEB_CFLAGS
++ CXXFLAGS=$NDEB_CXXFLAGS
++ LDFLAGS=$NDEB_LDFLAGS
+ else
+ echo " $CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || CFLAGS="$CFLAGS -g"
+ echo " $CXXFLAGS "| $EGREP_Q "$dbgrx1|$dbgrx2" || CXXFLAGS="$CXXFLAGS -g"
+ echo " $LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || LDFLAGS="$LDFLAGS -g"
+ STRIP="@:"
++ case "$compiler:$compiler_version" in
++ GCC:4[89]? | GCC:[5-9]? | GCC:???? )
++ # GCC 4.8 defaults to DWARF 4, which Totalview for one
++ # can't handle; roll back to version 3 by default.
++ echo " $USER_CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ CFLAGS="$NDEB_CFLAGS -gdwarf-3"
++ echo " $USER_CXXFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ CXXFLAGS="$NDEB_CXXFLAGS -gdwarf-3"
++ echo " $USER_LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ LDFLAGS="$NDEB_LDFLAGS -gdwarf-3"
++ ;;
++ esac
+ fi
+
+ NOPT_CFLAGS=` echo " $CFLAGS " | sed "s/$optrx/ /g"`
+@@ -3024,9 +3156,9 @@
+ ### Check for other standard library functions
+
+ AC_FUNC_VPRINTF
+-AC_CHECK_FUNCS(euidaccess atoll basename lchown fseeko getpagesize \
+- getpass getpassphrase getpwuid getrusage gettimeofday \
+- getuid memrchr readpassphrase readv usleep \
++AC_CHECK_FUNCS(euidaccess atoll basename lchown fseeko getgrouplist \
++ getpagesize getpass getpassphrase getpwuid getrusage \
++ gettimeofday getuid memrchr readpassphrase readv usleep \
+ asprintf vasprintf vsnprintf select statfs statvfs \
+ strcasecmp strlcat strlcpy strdup strndup strtok_r \
+ sysmp timegm utimes lutimes writev)
+@@ -3253,17 +3385,6 @@
+ fi
+
+
+-AC_CACHE_CHECK([for std::is_sorted<> in <algorithm>], ncbi_cv_func_is_sorted,
+- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM(
+- [[#include <algorithm>]],
+- [[int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;]])],
+- [ncbi_cv_func_is_sorted=yes], [ncbi_cv_func_is_sorted=no])])
+-if test "$ncbi_cv_func_is_sorted" = yes; then
+- AC_DEFINE(HAVE_IS_SORTED, 1,
+- [Define to 1 if <algorithm> supplies `std::is_sorted<>'.])
+-fi
+-
+-
+
+ AC_CACHE_CHECK([for SysV semaphores], ncbi_cv_sys_semaphores,
+ AC_LINK_IFELSE([AC_LANG_PROGRAM([#include <sys/types.h>
+@@ -3400,7 +3521,7 @@
+ AC_CACHE_CHECK([whether the C compiler supports C99 restrict],
+ ncbi_cv_c_restrict,
+ [ncbi_cv_c_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_c_restrict" = "no" || break
+ AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
+ [ncbi_cv_c_restrict=$restrict], [])
+@@ -3420,7 +3541,7 @@
+ AC_CACHE_CHECK([whether the C++ compiler supports C99 restrict],
+ ncbi_cv_cxx_restrict,
+ [ncbi_cv_cxx_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_cxx_restrict" = "no" || break
+ AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
+ [ncbi_cv_cxx_restrict=$restrict], [])
+@@ -3525,14 +3646,6 @@
+ unaligned addresses.])
+ fi
+
+-AC_CACHE_CHECK([whether $CXX supports C++0x nullptr], ncbi_cv_cxx_nullptr,
+- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([], [[void * p = nullptr;]])],
+- [ncbi_cv_cxx_nullptr=yes], [ncbi_cv_cxx_nullptr=no])])
+-if test "$ncbi_cv_cxx_nullptr" = yes; then
+- AC_DEFINE(HAVE_NULLPTR, 1,
+- [Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword.])
+-fi
+-
+ ### Check for the availability of other packages
+ ### --------------------------------------------
+
+@@ -3630,7 +3743,16 @@
+ dnl NCBI_CHECK_LIBS(FUSE, fuse, fuse_loop)
+ AC_SEARCH_LIBS(fuse_loop, fuse, [NCBI_PACKAGE(FUSE)])
+ LIBS=$orig_LIBS
++# Temporarily drop OpenMP flags for this test, as some toolchains count
++# its support library's indirect use of librt when building applications
++# but not when building shared libraries with --no-undefined.
++orig_CXXFLAGS=$CXXFLAGS
++orig_LDFLAGS=$LDFLAGS
++CXXFLAGS=`echo $CXXFLAGS | sed -e 's/[[^ ]]*openmp[[^ ]]*//g'`
++LDFLAGS=`echo $LDFLAGS | sed -e 's/[[^ ]]*openmp[[^ ]]*//g'`
+ NCBI_CHECK_LIBS(RT, rt posix4, clock_gettime)
++CXXFLAGS=$orig_CXXFLAGS
++LDFLAGS=$orig_LDFLAGS
+ NCBI_CHECK_LIBS(DEMANGLE, demangle, cplus_demangle)
+ # Add to (orig_)LIBS if present for the sake of corelib and the
+ # following call to AC_CHECK_FUNCS.
+@@ -3734,7 +3856,6 @@
+ NCBI_PACKAGE(LocalBZ2)
+ fi
+
+-: ${LZO_PATH=$NCBI/lzo2}
+ if test -d "$LZO_PATH"; then
+ NCBI_FIX_DIR(LZO_PATH)
+ fi
+@@ -3767,7 +3888,7 @@
+ ## SSL/TLS libraries
+ case "$with_gcrypt" in
+ no ) ac_cv_path_LIBGCRYPT_CONFIG=no ;;
+- yes | '' ) : ${GCRYPT_PATH=$NCBI/gcrypt} ;;
++ yes | '' ) ;;
+ * ) GCRYPT_PATH=$with_gcrypt ;;
+ esac
+ if test -d "$GCRYPT_PATH"; then
+@@ -3802,13 +3923,16 @@
+
+ case "$with_gnutls" in
+ no ) ac_cv_path_LIBGNUTLS_CONFIG=no ;;
+- yes | '' ) : ${GNUTLS_PATH=$NCBI/gnutls} ;;
++ yes | '' ) ;;
+ * ) GNUTLS_PATH=$with_gnutls ;;
+ esac
+ if test -d "$GNUTLS_PATH"; then
+ NCBI_FIX_DIR(GNUTLS_PATH)
++ gnutls_config_path=${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin
++else
++ gnutls_config_path=$PATH
+ fi
+-AC_PATH_PROG(LIBGNUTLS_CONFIG, libgnutls-config, [], [${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin:$PATH])
++AC_PATH_PROG(LIBGNUTLS_CONFIG, libgnutls-config, [], [$gnutls_config_path])
+
+ if test "x$with_gnutls" != xno; then
+ if test -x "$LIBGNUTLS_CONFIG"; then
+@@ -3817,7 +3941,7 @@
+ test "x$p" = "x/usr" || GNUTLS_PATH=$p
+ fi
+ else
+- LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls"
++ LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls --static"
+ $LIBGNUTLS_CONFIG --exists >/dev/null 2>&1 || LIBGNUTLS_CONFIG=no
+ fi
+ case "$LIBGNUTLS_CONFIG" in
+@@ -3846,6 +3970,10 @@
+ $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS)
+ if test "x$with_gnutls" != xno -a -n "$GNUTLS_CONFIG_LIBS"; then
+ NCBI_RPATHIFY_OUTPUT(GNUTLS_LIBS, [echo $GNUTLS_CONFIG_LIBS], [$no_usr_lib])
++ # Conservatively build against gcrypt if available even when gnutls
++ # uses nettle instead, because gcrypt needs explicit initialization
++ # to be thread-safe, but gnutls's headers don't indicate which
++ # underlying crypto library it's actually using.
+ case "$GNUTLS_INCLUDE" in
+ *$GCRYPT_INCLUDE* ) ;;
+ * ) GNUTLS_INCLUDE="$GNUTLS_INCLUDE $GCRYPT_INCLUDE" ;;
+@@ -4108,7 +4236,8 @@
+ SYBASE_DBLIBS="$SYBASE_LPATH $SYBASE_DBLIBS"
+ SYBASE_DLLS="$SYBASE_DLLLIST"
+
+- AC_CACHE_CHECK([for Sybase in $SYBASE_PATH], ncbi_cv_lib_sybase,
++ AC_CACHE_CHECK([for Sybase${SYBASE_PATH:+ in $SYBASE_PATH}],
++ ncbi_cv_lib_sybase,
+ [CPPFLAGS="$SYBASE_INCLUDE $orig_CPPFLAGS"
+ LIBS="$SYBASE_LIBS $SYBASE_DLLS $SYBASE_NETWORK_LIBS $DL_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -4216,7 +4345,8 @@
+ AC_MSG_NOTICE([Using bundled FreeTDS (version $ftds_ver) from $FTDS_PATH])
+ else
+ FTDS_LIBS="$FTDS_CTLIBS"
+- AC_CACHE_CHECK([for FreeTDS in $FTDS_PATH], ncbi_cv_lib_freetds,
++ AC_CACHE_CHECK([for FreeTDS${FTDS_PATH:+ in $FTDS_PATH}],
++ ncbi_cv_lib_freetds,
+ [CPPFLAGS="$FTDS_INCLUDE $orig_CPPFLAGS"
+ LIBS="$FTDS_LIBS $NETWORK_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -4281,7 +4411,7 @@
+ # Kill off single quotes, due to later requoting
+ : ${MYSQL_INCLUDE=`$mysql_config --include | tr -d \'`}
+ NCBI_RPATHIFY_OUTPUT_COND(MYSQL_LIBS, $mysql_config --libs${mt_sfx:+_r},
+- [s/'//g; ])
++ [s/'//g; $no_usr_lib])
+ AC_CACHE_CHECK([whether MySQL works], ncbi_cv_lib_mysql,
+ [CPPFLAGS="$MYSQL_INCLUDE $orig_CPPFLAGS"
+ LIBS="$MYSQL_LIBS $orig_LIBS"
+@@ -4310,7 +4440,6 @@
+ if test "$with_bdb" != "no" ; then
+ case "$with_bdb" in
+ yes | "" )
+- : ${BERKELEYDB_PATH:="$NCBI/BerkeleyDB"}
+ ;;
+ */*)
+ BERKELEYDB_PATH=$with_bdb
+@@ -4351,7 +4480,8 @@
+ else
+ BERKELEYDB_STATIC_LIBS=${BERKELEYDB_LIBS}
+ fi
+- AC_CACHE_CHECK([for Berkeley DB libraries in $BERKELEYDB_PATH],
++ AC_CACHE_CHECK(
++ [for Berkeley DB libraries${BERKELEYDB_PATH:+ in $BERKELEYDB_PATH}],
+ ncbi_cv_lib_berkeley_db,
+ [CPPFLAGS="$BERKELEYDB_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BERKELEYDB_LIBS $orig_LIBS"
+@@ -4450,7 +4580,8 @@
+ NCBI_RPATHIFY(ODBC_LIBS, ${ODBC_LIBPATH}, [ -lodbc -lodbcinst])
+ CPPFLAGS="$ODBC_INCLUDE $orig_CPPFLAGS"
+ LIBS="$ODBC_LIBS $orig_LIBS"
+- AC_CACHE_CHECK([for ODBC libraries in $ODBC_PATH], ncbi_cv_lib_odbc,
++ AC_CACHE_CHECK([for ODBC libraries${ODBC_PATH:+ in $ODBC_PATH}],
++ ncbi_cv_lib_odbc,
+ [AC_LINK_IFELSE([AC_LANG_PROGRAM(
+ [[#include <sql.h>]],
+ [[SQLHDBC hdbc; SQLCHAR* cp = (SQLCHAR*) "x";
+@@ -4542,7 +4673,7 @@
+ AC_PATH_PROG(PERL, perl, [], [$PERL_PATH/bin:$PATH])
+ if test -x "$PERL"; then
+ PERL_ARCHLIB=`$PERL -MConfig -e 'print \$Config{archlibexp};'`
+- PERL_FLAGS=`$PERL -MConfig -e 'print \$Config{cppflags};'`
++ PERL_FLAGS=`$PERL -MConfig -e 'print join " ", grep /^-[[DI]]/, split /\\s+/, \$Config{cppflags};'`
+ PERL_INCLUDE="-I$PERL_ARCHLIB/CORE $PERL_FLAGS"
+ PERL_DEPS=`$PERL -MConfig -e 'print \$Config{libs};'`
+ NCBI_RPATHIFY(PERL_LIBS, $PERL_ARCHLIB/CORE, [ -lperl $PERL_DEPS])
+@@ -4603,9 +4734,7 @@
+
+ ## Boost
+ if test "$with_boost" != "no"; then
+- if test "${with_boost-yes}" = yes; then
+- : ${BOOST_PATH=$NCBI/boost}
+- else
++ if test "${with_boost-yes}" != yes; then
+ BOOST_PATH=$with_boost
+ fi
+ if test -d "$BOOST_PATH"; then
+@@ -4644,17 +4773,22 @@
+ if test -d `echo $BOOST_INCLUDE | sed -e 's/^-I//'`/boost-${ncbi_cv_lib_boost_version}/boost; then
+ BOOST_INCLUDE=$BOOST_INCLUDE/boost-${ncbi_cv_lib_boost_version}
+ fi
+- case "$ncbi_compiler" in
+- MIPSPRO)
++ case "$compiler:$ncbi_compiler_ver" in
++ MIPSpro*)
+ BOOST_INCLUDE="$BOOST_INCLUDE $BOOST_INCLUDE/boost/compatibility/cpp_c_headers"
+ ;;
+- WORKSHOP)
++ WorkShop*)
+ # Boost.Test's macros yield a *lot* of spurious "should not initialize
+ # a non-const reference with a temporary" warnings, to the point of
+ # overwhelming the compiler in some cases; turn them off altogether
+ # when using Boost at all.
+ BOOST_INCLUDE="$BOOST_INCLUDE -erroff=reftotemp"
+ ;;
++ GCC*:4[[7-9]]* | GCC*:5*)
++ # Some portions of Boost also have a lot of "unused" typedefs
++ # from concept checking.
++ BOOST_INCLUDE="$BOOST_INCLUDE -Wno-unused-local-typedefs"
++ ;;
+ esac
+ case "$ncbi_cv_lib_boost_version" in
+ 0_* | 1_[[0-9]] | 1_[[0-9]]_* | 1_[[0-2]][[0-9]] | 1_[[0-2]][[0-9]]_* ) ;;
+@@ -4666,7 +4800,7 @@
+ fi
+ with_boost=no
+ ;;
+- 1_3[[5-9]] | 1_3[[5-9]]_* | 1_4* | 1_5[[0-2]] | 1_5[[0-2]]_* ) ;;
++ 1_3[[5-9]] | 1_3[[5-9]]_* | 1_4* | 1_5[[0-3]] | 1_5[[0-3]]_* ) ;;
+ '' ) with_boost=no ;;
+ * )
+ AC_MSG_WARN(
+@@ -4751,7 +4885,9 @@
+ BOOST_REGEX_STATIC_LIBS=$BOOST_REGEX_LIBS
+ fi
+
+- AC_CACHE_CHECK([for Boost.Regex in $BOOST_PATH], ncbi_cv_lib_boost_regex,
++ in_path=${BOOST_PATH:+ in $BOOST_PATH}
++
++ AC_CACHE_CHECK([for Boost.Regex$in_path], ncbi_cv_lib_boost_regex,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BOOST_LIBPATH $BOOST_REGEX_LIBS $RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4759,7 +4895,7 @@
+ [[throw boost::regex_error(boost::regex_constants::error_stack);]])],
+ [ncbi_cv_lib_boost_regex=yes], [ncbi_cv_lib_boost_regex=no])])
+
+- AC_CACHE_CHECK([for Boost.Spirit in $BOOST_PATH], ncbi_cv_lib_boost_spirit,
++ AC_CACHE_CHECK([for Boost.Spirit$in_path], ncbi_cv_lib_boost_spirit,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4774,7 +4910,7 @@
+ BOOST_SYSTEM_STATIC_LIBS=$BOOST_SYSTEM_LIBS
+ fi
+
+- AC_CACHE_CHECK([for Boost.System in $BOOST_PATH], ncbi_cv_lib_boost_system,
++ AC_CACHE_CHECK([for Boost.System$in_path], ncbi_cv_lib_boost_system,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BOOST_LIBPATH $BOOST_SYSTEM_LIBS $RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4785,6 +4921,24 @@
+ BOOST_SYSTEM_LIBS=
+ BOOST_SYSTEM_STATIC_LIBS=])])
+
++ boost_fs_lib=-lboost_filesystem${BOOST_TAG}
++ if test -f "$BOOST_LIBPATH_/libboost_filesystem${BOOST_TAG}-static.a"; then
++ boost_fs_static_lib=-lboost_filesystem${BOOST_TAG}-static
++ else
++ boost_fs_static_lib=$boost_fs_lib
++ fi
++ BOOST_FILESYSTEM_LIBS="$boost_fs_lib $BOOST_SYSTEM_LIBS"
++ BOOST_FILESYSTEM_STATIC_LIBS="$boost_fs_static_lib $BOOST_SYSTEM_STATIC_LIBS"
++
++ AC_CACHE_CHECK([for Boost.Filesystem$in_path], ncbi_cv_lib_boost_filesystem,
++ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
++ LIBS="$BOOST_LIBPATH $BOOST_FILESYSTEM_LIBS $RT_LIBS $orig_LIBS"
++ [AC_LINK_IFELSE(
++ [AC_LANG_PROGRAM([[#include <boost/filesystem.hpp>]],
++ [[return boost::filesystem::portable_name("foo");]])],
++ [ncbi_cv_lib_boost_filesystem=yes],
++ [ncbi_cv_lib_boost_filesystem=no])])
++
+ BOOST_TEST_PEM_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}
+ if test -f "$BOOST_LIBPATH_/libboost_prg_exec_monitor${BOOST_TAG}-static.a"; then
+ BOOST_TEST_PEM_STATIC_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}-static
+@@ -4813,7 +4967,7 @@
+ BOOST_TEST_TEM_LIBS=$BOOST_TEST_TEM_STATIC_LIBS
+ BOOST_TEST_UTF_LIBS=$BOOST_TEST_UTF_STATIC_LIBS
+
+- AC_CACHE_CHECK([for Boost.Test in $BOOST_PATH], ncbi_cv_lib_boost_test,
++ AC_CACHE_CHECK([for Boost.Test$in_path], ncbi_cv_lib_boost_test,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$RT_LIBS $orig_LIBS"
+ found=
+@@ -4853,7 +5007,7 @@
+ BOOST_THREAD_STATIC_LIBS=$BOOST_THREAD_LIBS
+ fi
+
+- AC_CACHE_CHECK([for Boost.Threads in $BOOST_PATH], ncbi_cv_lib_boost_thread,
++ AC_CACHE_CHECK([for Boost.Threads$in_path], ncbi_cv_lib_boost_thread,
+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
+ LIBS="$BOOST_LIBPATH $BOOST_THREAD_LIBS $RT_LIBS $orig_LIBS"
+ [AC_LINK_IFELSE(
+@@ -4864,12 +5018,25 @@
+ BOOST_INCLUDE=
+ BOOST_LIBPATH=
+ BOOST_TAG=
++ ncbi_cv_lib_boost_filesystem=no
+ ncbi_cv_lib_boost_regex=no
+ ncbi_cv_lib_boost_spirit=no
++ ncbi_cv_lib_boost_system=no
+ ncbi_cv_lib_boost_test=no
+ ncbi_cv_lib_boost_thread=no
+ fi
+
++if test "$ncbi_cv_lib_boost_filesystem" != "no"; then
++ dnl AC_DEFINE(HAVE_BOOST_FILESYSTEM, 1,
++ dnl [Define to 1 if the `Boost.Filesystem' library is available.])
++ NCBI_PACKAGE(Boost.Filesystem)
++else
++ boost_fs_lib=
++ boost_fs_static_lib=
++ BOOST_FILESYSTEM_LIBS=
++ BOOST_FILESYSTEM_STATIC_LIBS=
++fi
++
+ if test "$ncbi_cv_lib_boost_regex" != "no"; then
+ AC_DEFINE(HAVE_BOOST_REGEX, 1,
+ [Define to 1 if the `Boost.Regex' library is available.])
+@@ -4927,7 +5094,10 @@
+
+ ## NCBI C Toolkit
+ if test "$with_ncbi_c" != "no" ; then
+- NCBI_C_PATH=${NCBI_C_PATH:="$NCBI"}
++ if test "${with_ncbi_c-yes}" != yes; then
++ NCBI_C_PATH=$with_ncbi_c
++ fi
++ : ${NCBI_C_PATH="$NCBI"}
+ if test "$ncbi_compiler" = ICC -a -d "$NCBI_C_PATH/ncbi_icc"; then
+ NCBI_C_PATH=$NCBI_C_PATH/ncbi_icc
+ fi
+@@ -4949,7 +5119,8 @@
+ NCBI_C_ncbi="-lncbi"
+ fi
+ NCBI_C_LIBPATH="-L$NCBI_C_LIBPATH"
+- AC_CACHE_CHECK([for the NCBI C toolkit in $NCBI_C_PATH], ncbi_cv_lib_ctools,
++ AC_CACHE_CHECK([for the NCBI C toolkit${NCBI_C_PATH:+ in $NCBI_C_PATH}],
++ ncbi_cv_lib_ctools,
+ [CPPFLAGS="$NCBI_C_INCLUDE $orig_CPPFLAGS"
+ LIBS="$NCBI_C_LIBPATH $NCBI_C_ncbi $NETWORK_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -5000,11 +5171,7 @@
+
+ ## OpenGL
+ if test "$with_opengl" != "no"; then
+- if test "${with_opengl-yes}" = yes; then
+- if test -d $NCBI/MesaGL; then
+- : ${OPENGL_PATH=$NCBI/MesaGL}
+- fi
+- else
++ if test "${with_opengl-yes}" != yes; then
+ OPENGL_PATH=$with_opengl
+ fi
+ if test -d "$OPENGL_PATH"; then
+@@ -5101,7 +5268,6 @@
+ else
+ OSMESA_STATIC_LIBS=$OSMESA_LIBS
+ fi
+- : ${GLUT_PATH=$NCBI/glut}
+ if test "$with_glut" != "no"; then
+ if test "${with_glut-yes}" != "yes"; then
+ GLUT_PATH=$with_glut
+@@ -5121,7 +5287,6 @@
+ NCBI_MISSING_PACKAGE(glut)
+ fi
+ fi
+- : ${GLEW_PATH=$NCBI/glew}
+ if test "$with_glew" != "no"; then
+ if test "${with_glew-yes}" != "yes"; then
+ GLEW_PATH=$with_glew
+@@ -5214,7 +5379,7 @@
+ : ${with_wxwidgets_ucs=no}
+ if test "$with_wxwidgets" != "no" ; then
+ case "$with_wxwidgets" in
+- yes | "" ) : ${WXWIDGETS_PATH=$NCBI/wxwidgets} ;;
++ yes | "" ) ;;
+ * ) WXWIDGETS_PATH=$with_wxwidgets ;;
+ esac
+ if test -d "$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
+@@ -5283,12 +5448,13 @@
+ libsed=$basesed
+ ;;
+ esac
+- AC_CACHE_CHECK([for wxWidgets in $WXWIDGETS_ARCH_PATH],
++ AC_CACHE_CHECK(
++ [for wxWidgets${WXWIDGETS_ARCH_PATH:+ in $WXWIDGETS_ARCH_PATH}],
+ ncbi_cv_lib_wxwidgets,
+ [if test -x "$wxconf" ; then
+ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
+ NCBI_RPATHIFY_OUTPUT(WXWIDGETS_LIBS, ["$wxconf" $wxcfflags --libs],
+- [$libsed; ])
++ [$libsed; s/ -lm / /g;])
+
+ CPPFLAGS="$WXWIDGETS_INCLUDE $orig_CPPFLAGS"
+ LIBS="$WXWIDGETS_LIBS $orig_LIBS"
+@@ -5315,12 +5481,12 @@
+ else
+ NCBI_PACKAGE(wxWidgets)
+ case "`"$wxconf" $wxcfflags --version`" in
+- 2.[[89]].* | 2.[[0-9]][[0-9]]* )
+- NCBI_PACKAGE(wx2.8)
+- wxlibs=std,richtext,aui
++ 1.* | 2.[[0-7]].*)
++ wxlibs=std
+ ;;
+ *)
+- wxlibs=std
++ NCBI_PACKAGE(wx2.8)
++ wxlibs=std,richtext,aui,propgrid
+ ;;
+ esac
+ # The "yes" may have been cached; get the actual settings again if needed
+@@ -5328,9 +5494,9 @@
+ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
+ fi
+ NCBI_RPATHIFY_OUTPUT(WXWIDGETS_LIBS, [$wxconf $wxcfflags --libs $wxlibs],
+- [$libsed; ])
++ [$libsed; s/ -lm / /g;])
+ WXWIDGETS_STATIC_LIBS=`"$wxconf" $wxcfflags --libs --static $wxlibs \
+- 2>/dev/null | sed -e "$basesed"`
++ 2>/dev/null | sed -e "$basesed; s/ -lm / /g;"`
+ if test -n "$WXWIDGETS_STATIC_LIBS"; then
+ # Allow direct use of underlying libraries with strict linkers
+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS `echo $WXWIDGETS_STATIC_LIBS | sed -e 's/.*\.a *//'`"
+@@ -5350,7 +5516,7 @@
+ ## In-house Fast-CGI library
+ if test "$with_fastcgi" != "no" ; then
+ case "$with_fastcgi" in
+- yes | "" ) : ${FASTCGI_PATH:="$NCBI/fcgi-current"} ;;
++ yes | "" ) ;;
+ */* ) FASTCGI_PATH=$with_fastcgi ;;
+ * ) FASTCGI_PATH=$NCBI/fcgi-${with_fastcgi} ;;
+ esac
+@@ -5366,7 +5532,8 @@
+ NCBI_RPATHIFY(FASTCGI_LIBS, $FASTCGI_LIBDIR, [ -lfcgi $NETWORK_LIBS])
+ FASTCGI_OBJS="fcgibuf"
+ LIBS="$FASTCGI_LIBS $orig_LIBS"
+- AC_CACHE_CHECK([for FastCGI libraries in $FASTCGI_PATH], ncbi_cv_lib_fcgi,
++ AC_CACHE_CHECK([for FastCGI libraries${FASTCGI_PATH:+ in $FASTCGI_PATH}],
++ ncbi_cv_lib_fcgi,
+ [CPPFLAGS="$FASTCGI_INCLUDE $orig_CPPFLAGS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+ [[#include <fcgiapp.h>]],
+@@ -5416,7 +5583,11 @@
+ else
+ with_included_sss=no
+ fi
++ if test "${with_sss-yes}" = yes; then
+ NCBI_SSS_PATH=${NCBI_SSS_PATH:="$NCBI/sss/BUILD"}
++ else
++ NCBI_SSS_PATH=$with_sss
++ fi
+ NCBI_SSS_INCLUDE=${NCBI_SSS_INCLUDE:="$NCBI_SSS_PATH/include"}
+ if test -z "$NCBI_SSS_LIBPATH" ; then
+ NCBI_SSS_LIBPATH="${NCBI_SSS_PATH}/lib/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"
+@@ -5424,7 +5595,8 @@
+ NCBI_SSS_LIBPATH="${NCBI_SSS_LIBPATH}mt"
+ fi
+ fi
+- AC_MSG_CHECKING([for NCBI SSS directories in $NCBI_SSS_PATH])
++ AC_MSG_CHECKING(
++ [for NCBI SSS directories${NCBI_SSS_PATH:+ in $NCBI_SSS_PATH}])
+ if test "$with_included_sss" = "yes"; then
+ AC_MSG_RESULT([yes]) # duh
+ elif test ! -d "${NCBI_SSS_LIBPATH}" -o ! -d "${NCBI_SSS_INCLUDE}" ; then
+@@ -5510,7 +5682,6 @@
+
+ # SP
+ if test "$with_sp" != "no" ; then
+- SP_PATH=${SP_PATH:="$NCBI/SP"}
+ if test -n "$SP_INCLUDE"; then
+ SP_GENERIC="$SP_INCLUDE/../generic"
+ else
+@@ -5520,7 +5691,7 @@
+ if test -z "$SP_LIBPATH" ; then
+ SP_LIBPATH="${SP_PATH}/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
+ fi
+- AC_MSG_CHECKING([for SP directories in $SP_PATH])
++ AC_MSG_CHECKING([for SP directories${SP_PATH:+ in $SP_PATH}])
+ if test ! -d "${SP_LIBPATH}" -o ! -d "${SP_INCLUDE}" ; then
+ AC_MSG_RESULT([no])
+ NCBI_MISSING_PACKAGE(sp)
+@@ -5558,19 +5729,13 @@
+
+
+ ## ORBacus CORBA
+-if test "${with_orbacus:-yes}" = yes; then
+- if test -d $NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT; then
+- : ${ORBACUS_PATH=$NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT}
+- else
+- : ${ORBACUS_PATH=$NCBI/corba/OB-4.0.1}
+- fi
+-elif test "$with_orbacus" != no; then
++if test "$with_orbacus" != no; then
++ if test "$with_orbacus" != yes; then
+ ORBACUS_PATH=$with_orbacus
+ fi
+ if test -d "$ORBACUS_PATH"; then
+ NCBI_FIX_DIR(ORBACUS_PATH)
+ fi
+-if test "$with_orbacus" != no; then
+ fullpath=${ORBACUS_PATH}/${DEBUG_SFX}${mt_sfx}${bit64_sfx}
+ if test -f ${fullpath}/inc/OB/Config.h ; then
+ : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include -I$fullpath/inc"}
+@@ -5594,7 +5759,8 @@
+ LIBIMR=
+ ;;
+ esac
+- AC_CACHE_CHECK([for ORBacus in $ORBACUS_PATH], ncbi_cv_lib_orbacus,
++ AC_CACHE_CHECK([for ORBacus${ORBACUS_PATH:+ in $ORBACUS_PATH}],
++ ncbi_cv_lib_orbacus,
+ [CPPFLAGS="$ORBACUS_INCLUDE $orig_CPPFLAGS"
+ LIBS="$ORBACUS_LIBPATH $LIBOB $NETWORK_LIBS $DL_LIBS $orig_LIBS"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM(
+@@ -5633,7 +5799,7 @@
+
+ if test "$with_icu" != "no" ; then
+ case "$with_icu" in
+- yes | "" ) : ${ICU_PATH=$NCBI/icu} ;;
++ yes | "" ) ;;
+ * ) ICU_PATH=$with_icu ;;
+ esac
+ if test -d "$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
+@@ -5648,7 +5814,8 @@
+ ICU_BINPATH=${ICU_BINPATH:="$ICU_ARCH_PATH/bin"}
+ ICU_LIBPATH=${ICU_LIBPATH:="$ICU_ARCH_PATH/lib"}
+ ICU_INCLUDE=
+- AC_CACHE_CHECK([for ICU in $ICU_ARCH_PATH], ncbi_cv_lib_icu,
++ AC_CACHE_CHECK([for ICU${ICU_ARCH_PATH:+ in $ICU_ARCH_PATH}],
++ ncbi_cv_lib_icu,
+ [ICU_CONFIG=`$ICU_BINPATH/icu-config --bindir 2>/dev/null`/icu-config
+ if test -x "$ICU_CONFIG" ; then
+ ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
+@@ -5690,9 +5857,6 @@
+
+
+ ### XML/XSL libraries
+-if test -d "$NCBI/expat/include"; then
+- : ${EXPAT_PATH=$NCBI/expat}
+-fi
+ NCBI_CHECK_THIRD_PARTY_LIB(expat,
+ AC_LANG_PROGRAM([#include <expat.h>],
+ [XML_Parser parser = XML_ParserCreate("utf-8");]))
+@@ -5701,7 +5865,6 @@
+ else
+ EXPAT_STATIC_LIBS=${EXPAT_LIBS}
+ fi
+-: ${SABLOT_PATH=$NCBI/Sablot}
+ vpath="$SABLOT_PATH/${compiler_vpfx}build"
+ test -d "$vpath" && SABLOT_PATH=$vpath
+ if test -d "$SABLOT_PATH"; then
+@@ -5718,7 +5881,6 @@
+ SABLOT_STATIC_LIBS=${SABLOT_LIBS}
+ fi
+
+-: ${LIBXML_PATH=$NCBI/libxml}
+ # test -d "$LIBXML_PATH" || LIBXML_PATH=`xml2-config --prefix 2>/dev/null`
+ if test "$with_libxml" != "no"; then
+ case "$with_libxml" in
+@@ -5813,7 +5975,6 @@
+ LIBEXSLT_STATIC_LIBS=${LIBEXSLT_LIBS}
+ fi
+
+-: ${XERCES_PATH=$NCBI/xerces}
+ if test "$with_xerces" != no; then
+ if test "${with_xerces-yes}" != yes; then
+ XERCES_PATH=$with_xerces
+@@ -5838,7 +5999,7 @@
+ NCBI_FIX_DIR(XERCES_LIBPATH)
+ fi
+ fi
+- if test -d $XERCES_PATH; then
++ if test -d "$XERCES_PATH"; then
+ in_path=" in $XERCES_PATH"
+ : ${XERCES_INCLUDE=-I$XERCES_PATH/include}
+ : ${XERCES_LIBPATH=$XERCES_PATH/lib}
+@@ -5875,7 +6036,6 @@
+ XERCES_STATIC_LIBS=
+ fi
+
+-: ${XALAN_PATH=$NCBI/xalan}
+ if test "$with_xalan" != no; then
+ if test "${with_xalan-yes}" != yes; then
+ XALAN_PATH=$with_xalan
+@@ -5900,7 +6060,7 @@
+ NCBI_FIX_DIR(XALAN_LIBPATH)
+ fi
+ fi
+- if test -d $XALAN_PATH; then
++ if test -d "$XALAN_PATH"; then
+ in_path=" in $XALAN_PATH"
+ : ${XALAN_INCLUDE=-I$XALAN_PATH/include}
+ : ${XALAN_LIBPATH=$XALAN_PATH/lib}
+@@ -5937,7 +6097,6 @@
+
+ test -d SunWS_cache && rm -r SunWS_cache
+
+-: ${ZORBA_PATH=$NCBI/zorba}
+ if test "$with_zorba" != no; then
+ if test "${with_zorba-yes}" != yes; then
+ ZORBA_PATH=$with_zorba
+@@ -5967,7 +6126,7 @@
+ ZORBA_PATH=`$ZORBA_CONFIG --prefix`
+ : ${ZORBA_INCLUDE=`$ZORBA_CONFIG --cppflags`}
+ fi
+- if test -d $ZORBA_PATH; then
++ if test -d "$ZORBA_PATH"; then
+ in_path=" in $ZORBA_PATH"
+ : ${ZORBA_INCLUDE=-I$ZORBA_PATH/include}
+ : ${ZORBA_LIBPATH=$ZORBA_PATH/lib}
+@@ -6010,7 +6169,7 @@
+
+ ### SQLite
+ case "$with_sqlite3" in
+- yes | '' ) : ${SQLITE3_PATH=$NCBI/sqlite3} ;;
++ yes | '' ) ;;
+ * ) SQLITE3_PATH=$with_sqlite3 ;;
+ esac
+
+@@ -6048,7 +6207,6 @@
+ ### OEChem
+ # somewhat kludgish, as we now wanto to add in oeiupac and oedepict,
+ # which depend on oechem....
+-: ${OECHEM_PATH=$NCBI/oechem}
+ NCBI_CHECK_THIRD_PARTY_LIB(oechem,
+ AC_LANG_PROGRAM([#include <oechem.h>],
+ [OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive();]),
+@@ -6091,7 +6249,7 @@
+
+ ### muParser
+ case "$with_muparser" in
+- yes | '' ) : ${MUPARSER_PATH=$NCBI/muParser} ;;
++ yes | '' ) ;;
+ * ) MUPARSER_PATH=$with_muparser ;;
+ esac
+
+@@ -6111,7 +6269,7 @@
+
+ ### hdf5
+ case "$with_hdf5" in
+- yes | '' ) : ${HDF5_PATH=$NCBI/hdf5} ;;
++ yes | '' ) ;;
+ * ) HDF5_PATH=$with_hdf5 ;;
+ esac
+
+@@ -6176,7 +6334,7 @@
+ GIF_LIBS=$UNGIF_LIBS
+ fi
+
+-test -n "$x_libraries" && : ${XPM_PATH=`dirname "$x_libraries"`}
++case "$x_libraries" in */*) : ${XPM_PATH=`dirname "$x_libraries"`} ;; esac
+ NCBI_CHECK_THIRD_PARTY_LIB(Xpm,
+ AC_LANG_PROGRAM([#include <X11/xpm.h>],
+ [XpmImage image; XpmInfo info;
+@@ -6241,7 +6399,7 @@
+ fi
+
+ case "$with_ftgl" in
+- yes | '' ) : ${FTGL_PATH=$NCBI/ftgl} ;;
++ yes | '' ) ;;
+ * ) FTGL_PATH=$with_ftgl ;;
+ esac
+
+@@ -6268,7 +6426,7 @@
+
+ # Mimetic
+ case "$with_mimetic" in
+- yes | '' ) : ${MIMETIC_PATH=$NCBI/mimetic} ;;
++ yes | '' ) ;;
+ * ) MIMETIC_PATH=$with_mimetic ;;
+ esac
+ if test -d "$MIMETIC_PATH"; then
+@@ -6293,6 +6451,88 @@
+ [mimetic::MimeEntity me;])])
+
+
++# gSOAP++
++case "$with_gsoap" in
++ yes | '' ) ;;
++ * ) GSOAP_PATH=$with_gsoap ;;
++esac
++if test -d "$GSOAP_PATH"; then
++ NCBI_FIX_DIR(GSOAP_PATH)
++fi
++for d in "$GSOAP_LIBDIR" \
++ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ "$GSOAP_PATH/lib${bit64_sfx}" \
++ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}/lib" \
++ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}/lib" \
++ "$GSOAP_PATH/lib"; do
++ if test -d "$d"; then
++ GSOAP_LIBDIR=$d
++ NCBI_FIX_DIR(GSOAP_LIBDIR)
++ break
++ fi
++done
++NCBI_RPATHIFY(GSOAP_LIBPATH, $GSOAP_LIBDIR)
++
++: ${GSOAP_BINDIR=`dirname "$GSOAP_LIBDIR"`/bin}
++AC_PATH_PROG(GSOAP_SOAPCPP2, soapcpp2, [], $GSOAP_BINDIR:$PATH)
++AC_PATH_PROG(GSOAP_WSDL2H, wsdl2h, [], $GSOAP_BINDIR:$PATH)
++
++NCBI_CHECK_THIRD_PARTY_LIB_EX(gsoap, GSOAP, gsoapssl++,
++ [AC_LANG_PROGRAM([#include <stdsoap2.h>
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultsubcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultstring(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultdetail(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultsubcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultdetail(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 void SOAP_FMAC4 soap_serializeheader(struct soap*) { }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_putheader(struct soap*) { return 0; }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_getheader(struct soap*) { return 0; }
++ SOAP_FMAC3 void SOAP_FMAC4 soap_serializefault(struct soap*) { }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_putfault(struct soap*) { return 0; }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_getfault(struct soap*) { return 0; }],
++ [soap s;])],
++ $OPENSSL_LIBS $Z_LIBS)
++
++case "$with_sqlite3" in
++ yes | '' ) ;;
++ * ) SQLITE3_PATH=$with_sqlite3 ;;
++esac
++
++
++# MongoDB
++if test -d "$MONGODB_PATH"; then
++ NCBI_FIX_DIR(MONGODB_PATH)
++fi
++if test -d $MONGODB_PATH/lib${bit64_sfx}; then
++ MONGODB_LIBDIR=$MONGODB_PATH/lib${bit64_sfx}
++else
++ MONGODB_LIBDIR=$MONGODB_PATH/lib
++fi
++# need Boost rpath
++NCBI_RPATHIFY(MONGODB_LIBPATH, $MONGODB_LIBDIR)
++NCBI_CHECK_THIRD_PARTY_LIB_EX(mongodb, MONGODB, mongoclient,
++ [AC_LANG_PROGRAM([#include <mongo/client/dbclient.h>],
++ [std::vector<mongo::HostAndPort> v;
++ mongo::DBClientReplicaSet client("foo", v);
++ client.connect();])],
++ [$BOOST_LIBPATH $boost_fs_lib $BOOST_THREAD_LIBS], [],
++ [$BOOST_INCLUDE])
++# MongoDB's own library is normally static, but its supporting Boost
++# libraries might not be by default.
++if test -n "$MONGODB_LIBS"; then
++ MONGODB_STATIC_LIBS="$MONGODB_LIBPATH -lmongodb $BOOST_LIBPATH $boost_fs_static_lib $BOOST_THREAD_STATIC_LIBS"
++else
++ MONGODB_STATIC_LIBS=
++fi
++
+ ### Restore original compiler/linker flags
+ LIBS="$orig_LIBS"
+ CPPFLAGS="$orig_CPPFLAGS"
+@@ -6499,16 +6739,6 @@
+ fi
+
+
+-## Sequence Read Archive SDK, which may be attached on either the
+-## public or the internal side
+-
+-if test -f "${real_srcdir}/src/sra/sdk/Makefile.sra_macros.mk"; then
+- sra=sra
+-else
+- sra=
+-fi
+-
+-
+ ## `internal' project cluster
+
+ if test "$with_internal" = "no" \
+@@ -6781,6 +7011,7 @@
+ AC_SUBST(C_LINK)
+ AC_SUBST(TAIL_N)
+ AC_SUBST(EGREP_Q)
++AC_SUBST(LDD_R)
+
+ AC_SUBST(CFLAGS)
+ AC_SUBST(FAST_CFLAGS)
+@@ -6829,7 +7060,6 @@
+ AC_SUBST(algo)
+ AC_SUBST(app)
+ AC_SUBST(internal)
+-AC_SUBST(sra)
+
+ AC_SUBST(check)
+ AC_SUBST(CHECK_ARG)
+@@ -6865,6 +7095,7 @@
+
+ AC_SUBST(THREAD_LIBS)
+ AC_SUBST(NCBIATOMIC_LIB)
++AC_SUBST(OPENMP_FLAGS)
+ AC_SUBST(NETWORK_LIBS)
+ AC_SUBST(NETWORK_PURE_LIBS)
+ AC_SUBST(RESOLVER_LIBS)
+@@ -6902,6 +7133,8 @@
+ AC_SUBST(BOOST_INCLUDE)
+ AC_SUBST(BOOST_LIBPATH)
+ AC_SUBST(BOOST_TAG)
++AC_SUBST(BOOST_FILESYSTEM_LIBS)
++AC_SUBST(BOOST_FILESYSTEM_STATIC_LIBS)
+ AC_SUBST(BOOST_REGEX_LIBS)
+ AC_SUBST(BOOST_REGEX_STATIC_LIBS)
+ AC_SUBST(BOOST_SYSTEM_LIBS)
+@@ -6968,6 +7201,8 @@
+ AC_SUBST(SQLITE3_STATIC_LIBS)
+ AC_SUBST(FREETYPE_INCLUDE)
+ AC_SUBST(FREETYPE_LIBS)
++AC_SUBST(GSOAP_PATH)
++AC_SUBST(MONGODB_STATIC_LIBS)
+ AC_SUBST(ncbi_xreader_pubseqos)
+ AC_SUBST(ncbi_xreader_pubseqos2)
+ AC_SUBST(UNLESS_PUBSEQOS)
+@@ -7194,7 +7429,9 @@
+
+ cat << EOCONF
+ ===============================================================================
+-NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running
++NCBI C++ Toolkit documentation:
++ Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
++ Local: ./doc/public/index.html
+ For the available configuration flags run: ./configure --help
+
+ CFLAGS = $CFLAGS
+--- ncbi_cxx--12_0_0/src/build-system/aclocal.m4.ori 2014-06-23 17:36:18.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/aclocal.m4 2014-06-23 17:36:59.000000000 +0200
+@@ -1,126 +1,45 @@
+-# Hacked up in various ways, since Autoconf's version doesn't quite
+-# suit our (unusual) conventions. (Originally from status.m4)
+-m4_define([_AC_SRCPATHS],
+-[#ac_builddir=. # Useless!
+-ac_builddir=$builddir
+-dnl Base source directories on path to *input* file.
+-if test -n "$ac_file_in"; then
+- ac_dir_in=`AS_DIRNAME(["$ac_file_in"])`
++# Autoconf's _AC_SRCDIRS (from status.m4; historically _AC_SRCPATHS)
++# doesn't quite suit the C++ Toolkit's conventions; tweak it accordingly.
++m4_copy([_AC_SRCDIRS], [NCBI_ORIG__AC_SRCDIRS])
++m4_define([_AC_SRCDIRS],
++[# Base source directories on path to *input* file.
++if test -n "$ac_f"; then
++ ac_dir_in=`AS_DIRNAME(["$ac_f"])`
+ else
+ ac_dir_in=$1
+ fi
+
+-if test $ac_dir_in != .; then
+- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[[\\/]],,'`
+- # A "../" for each directory in $ac_dir_suffix.
+- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[[^\\/]]*,../,g'`
+-else
+- ac_dir_suffix= ac_top_builddir=
+-fi
++NCBI_ORIG__AC_SRCDIRS(["$ac_dir_in"])
+
+-case $srcdir in
+- .) # No --srcdir option. We are building in place.
+- ac_srcdir=.
+- if test -z "$ac_top_builddir"; then
+- ac_top_srcdir=.
+- else
+- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
+- fi ;;
+- [[\\/]]* | ?:[[\\/]]* ) # Absolute path.
+- ac_srcdir=$srcdir/$ac_dir_suffix;
+- ac_top_srcdir=$srcdir ;;
+- *) # Relative path.
+- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
+- ac_top_srcdir=$ac_top_builddir$srcdir ;;
+-esac
+-# Do not use `cd foo && pwd` to compute absolute paths, because
+-# the directories may not exist.
+-AS_SET_CATFILE([ac_abs_builddir], [$builddir], [$1])
+-AS_SET_CATFILE([ac_abs_top_builddir],
+- [$ac_abs_builddir], [${ac_top_builddir}.])
+ AS_SET_CATFILE([ac_abs_top_srcdir], [$ac_dir_in], [$real_srcdir])
+-AS_SET_CATFILE([ac_abs_srcdir], [$ac_abs_top_srcdir], [$ac_dir_suffix])
+-])# _AC_SRCPATHS
+-
++ac_builddir=$builddir
++])
+
+-# Copied from autoconf 2.59 (m4sh.m4), but rearranged to make bash a
+-# last resort due to issues with sourcing .bashrc.
+-m4_define([_AS_LINENO_PREPARE],
+-[_AS_LINENO_WORKS || {
+- # Find who we are. Look in the path if we contain no path at all
+- # relative or not.
+- case $[0] in
+- *[[\\/]]* ) as_myself=$[0] ;;
+- *) _AS_PATH_WALK([],
+- [test -r "$as_dir/$[0]" && as_myself=$as_dir/$[0] && break])
+- ;;
+- esac
+- # We did not find ourselves, most probably we were run as `sh COMMAND'
+- # in which case we are not to be found in the path.
+- if test "x$as_myself" = x; then
+- as_myself=$[0]
+- fi
+- if test ! -f "$as_myself"; then
+- AS_ERROR([cannot find myself; rerun with an absolute path])
+- fi
+- case $CONFIG_SHELL in
+- '')
+- AS_UNSET(ZSH_VERSION)
+- for as_base in sh ksh sh5 bash; do
+- _AS_PATH_WALK([/bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH],
+- [case $as_dir in
+- /*)
+- if ("$as_dir/$as_base" -c \
+- 'test -z "$ZSH_VERSION" && { _AS_LINENO_WORKS; }') 2>/dev/null
+- then
+- AS_UNSET(BASH_ENV)
+- AS_UNSET(ENV)
+- CONFIG_SHELL=$as_dir/$as_base
+- export CONFIG_SHELL
+- exec "$CONFIG_SHELL" "$[0]" ${1+"$[@]"}
+- fi;;
+- esac
+- done]);;
+- esac
+
+- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
+- # uniformly replaced by the line number. The first 'sed' inserts a
+- # line-number line before each line; the second 'sed' does the real
+- # work. The second script uses 'N' to pair each line-number line
+- # with the numbered line, and appends trailing '-' during
+- # substitution so that $LINENO is not a special case at line end.
+- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
+- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
+- sed '=' <$as_myself |
+- sed '
+- N
+- s,$,-,
+- : loop
+- s,^\([['$as_cr_digits']]*\)\(.*\)[[$]]LINENO\([[^'$as_cr_alnum'_]]\),\1\2\1\3,
+- t loop
+- s,-$,,
+- s,^[['$as_cr_digits']]*\n,,
+- ' >$as_me.lineno &&
+- chmod +x $as_me.lineno ||
+- AS_ERROR([cannot create $as_me.lineno; rerun with a POSIX shell])
+-
+- # Don't try to exec as it changes $[0], causing all sort of problems
+- # (the dirname of $[0] is not the place where we might find the
+- # original and so on. Autoconf is especially sensible to this).
+- . ./$as_me.lineno
+- # Exit status is that of the last command.
+- exit
+-}
+-])# _AS_LINENO_PREPARE
++# _AS_DETECT_BETTER_SHELL and its helper _AS_RUN (from m4sh.m4; both
++# historically part of _AS_LINENO_PREPARE) also need tweaking, to make
++# bash a last resort due to issues with sourcing .bashrc while entirely
++# avoiding zsh, which passes itself off as ksh on some systems but runs
++# parent shells' exit handlers from subshells, resulting in premature
++# cleanup of temporary files (notably confdefs.h).
++m4_copy([_AS_DETECT_BETTER_SHELL], [NCBI_ORIG__AS_DETECT_BETTER_SHELL])
++m4_copy([_AS_RUN], [NCBI_ORIG___AS_RUN])
++
++m4_define([_AS_DETECT_BETTER_SHELL],
++ [patsubst(m4_defn([NCBI_ORIG__AS_DETECT_BETTER_SHELL]),
++ [sh bash ksh sh5], [sh ksh sh5 bash])])
++m4_define([_AS_RUN],
++[m4_divert_once([M4SH-SANITIZE], [AS_UNSET(ZSH_VERSION)])dnl
++NCBI_ORIG___AS_RUN([test -z "${ZSH_VERSION+set}" || exit $?; $1], [$2])])
+
+
+ # One more hack: suppress PACKAGE_*, as we don't use them and some
+ # third-party libraries expose their corresponding settings, leading
+ # to preprocessor warnings.
+-m4_define([NCBI_ORIG_ACDU], m4_defn([AC_DEFINE_UNQUOTED]))
++m4_copy([AC_DEFINE_UNQUOTED], [NCBI_ORIG_AC_DEFINE_UNQUOTED])
+ m4_define([AC_DEFINE_UNQUOTED],
+ [ifelse(m4_substr([$1], 0, 8), [PACKAGE_], [],
+- [NCBI_ORIG_ACDU($@)])])
++ [NCBI_ORIG_AC_DEFINE_UNQUOTED($@)])])
+
+
+ AC_DEFUN(NCBI_FIX_DIR,
+@@ -158,7 +77,7 @@
+ AC_MSG_WARN([Proceeding without questions per --without-caution]) ;;
+ * )
+ echo "$1 [[y/N]]"
+- read answer
++ read answer <& AS_ORIGINAL_STDIN_FD
+ case "$answer" in
+ [[Yy]]* ) AC_MSG_WARN([Proceeding at your own risk...]) ;;
+ * ) AC_MSG_ERROR([Configuration has been canceled by user.]) ;;
+--- ncbi_cxx--12_0_0/src/build-system/config.h.in.ori 2014-06-23 17:38:56.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/config.h.in 2014-06-23 17:39:04.000000000 +0200
+@@ -98,6 +98,9 @@
+ /* Define to 1 if you have the `getaddrinfo' function. */
+ #undef HAVE_GETADDRINFO
+
++/* Define to 1 if you have the `getgrouplist' function. */
++#undef HAVE_GETGROUPLIST
++
+ /* If you have the `gethostbyaddr_r' function, define to the number of
+ arguments it takes (normally 7 or 8). */
+ #undef HAVE_GETHOSTBYADDR_R
+@@ -176,9 +179,6 @@
+ /* Define to 1 if you have `ios(_base)::register_callback'. */
+ #undef HAVE_IOS_REGISTER_CALLBACK
+
+-/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
+-#undef HAVE_IS_SORTED
+-
+ /* Define to 1 if you have the `lchown' function. */
+ #undef HAVE_LCHOWN
+
+@@ -234,6 +234,9 @@
+ /* Define to 1 if libgnutls is available. */
+ #undef HAVE_LIBGNUTLS
+
++/* Define to 1 if libgsoapssl++ is available. */
++#undef HAVE_LIBGSOAP
++
+ /* Define to 1 if libhdf5_cpp is available. */
+ #undef HAVE_LIBHDF5
+
+@@ -260,6 +263,9 @@
+ /* Define to 1 if libmimetic is available. */
+ #undef HAVE_LIBMIMETIC
+
++/* Define to 1 if libmongoclient is available. */
++#undef HAVE_LIBMONGODB
++
+ /* Define to 1 if libmuparser is available. */
+ #undef HAVE_LIBMUPARSER
+
+@@ -382,9 +388,6 @@
+ /* Define to 1 if `min'/`max' templates are not implemented. */
+ #undef HAVE_NO_MINMAX_TEMPLATE
+
+-/* Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword. */
+-#undef HAVE_NULLPTR
+-
+ /* Define to 1 if ODBC libraries are available. */
+ #undef HAVE_ODBC
+
+@@ -799,37 +802,37 @@
+ by a signal. */
+ #undef SELECT_UPDATES_TIMEOUT
+
+-/* The size of a `char', as computed by sizeof. */
++/* The size of `char', as computed by sizeof. */
+ #undef SIZEOF_CHAR
+
+-/* The size of a `double', as computed by sizeof. */
++/* The size of `double', as computed by sizeof. */
+ #undef SIZEOF_DOUBLE
+
+-/* The size of a `float', as computed by sizeof. */
++/* The size of `float', as computed by sizeof. */
+ #undef SIZEOF_FLOAT
+
+-/* The size of a `int', as computed by sizeof. */
++/* The size of `int', as computed by sizeof. */
+ #undef SIZEOF_INT
+
+-/* The size of a `long', as computed by sizeof. */
++/* The size of `long', as computed by sizeof. */
+ #undef SIZEOF_LONG
+
+-/* The size of a `long double', as computed by sizeof. */
++/* The size of `long double', as computed by sizeof. */
+ #undef SIZEOF_LONG_DOUBLE
+
+-/* The size of a `long long', as computed by sizeof. */
++/* The size of `long long', as computed by sizeof. */
+ #undef SIZEOF_LONG_LONG
+
+-/* The size of a `short', as computed by sizeof. */
++/* The size of `short', as computed by sizeof. */
+ #undef SIZEOF_SHORT
+
+-/* The size of a `size_t', as computed by sizeof. */
++/* The size of `size_t', as computed by sizeof. */
+ #undef SIZEOF_SIZE_T
+
+-/* The size of a `void*', as computed by sizeof. */
++/* The size of `void*', as computed by sizeof. */
+ #undef SIZEOF_VOIDP
+
+-/* The size of a `__int64', as computed by sizeof. */
++/* The size of `__int64', as computed by sizeof. */
+ #undef SIZEOF___INT64
+
+ /* Define to 1 if the stack grows down. */
+@@ -870,5 +873,5 @@
+ /* Define to empty if `const' does not conform to ANSI C. */
+ #undef const
+
+-/* Define to `unsigned' if <sys/types.h> does not define. */
++/* Define to `unsigned int' if <sys/types.h> does not define. */
+ #undef size_t
+--- ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h.ori 2014-06-23 17:40:40.000000000 +0200
++++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h 2014-06-23 17:40:57.000000000 +0200
+@@ -1,4 +1,4 @@
+-/* $Id: ncbiconf_xcode.h 361821 2012-05-04 14:28:13Z ucko $
++/* $Id$
+ * By Vlad Lebedev, NCBI (lebedev@ncbi.nlm.nih.gov)
+ *
+ * Mac OS X - xCode Build
+@@ -258,9 +258,6 @@
+ /* Define to 1 if you have `ios(_base)::register_callback'. */
+ #define HAVE_IOS_REGISTER_CALLBACK 1
+
+-/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
+-/* #undef HAVE_IS_SORTED */
+-
+ /* Define to 1 if you have the `lchown' function. */
+ /* #undef HAVE_LCHOWN */
+
+@@ -358,6 +355,9 @@
+ /* Define to 1 if you have the `lutimes' function. */
+ /* #undef HAVE_LUTIMES */
+
++/* Define to 1 if you have the `madvise' function. */
++#define HAVE_MADVISE 1
++
+ /* Define to 1 if you have the <malloc.h> header file. */
+ /* #undef HAVE_MALLOC_H */
+
+@@ -589,15 +589,15 @@
+ /* Define to 1 if you have the <windows.h> header file. */
+ /* #undef HAVE_WINDOWS_H */
+
++/* Define to 1 if you have the `writev' function. */
++#define HAVE_WRITEV 1
++
+ /* Define to 1 if the system has the type `wstring'. */
+ #define HAVE_WSTRING 1
+
+ /* Define to 1 if wxWidgets is available. */
+ /* #undef HAVE_WXWIDGETS */
+
+-/* Define to 1 if nullptr keyword is available. */
+-/* #undef HAVE_NULLPTR */
+-
+ /* Define as const if the declaration of iconv() needs const. */
+ #if MAC_OS_X_VERSION_MIN_REQUIRED >= 1050 /* MAC_OS_X_VERSION_10_5 */
+ # define ICONV_CONST
+@@ -694,7 +694,7 @@
+ /* Define to empty if `const' does not conform to ANSI C. */
+ /* #undef const */
+
+-/* Define to `unsigned' if <sys/types.h> does not define. */
++/* Define to `unsigned int' if <sys/types.h> does not define. */
+ /* #undef size_t */
+
+ /*
+--- ncbi_cxx--12_0_0/src/build-system/configure.ori 2013-05-20 23:03:20.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/configure 2014-06-23 22:22:50.000000000 +0200
+@@ -1,19 +1,13 @@
+ #! /bin/sh
+ # Guess values for system-dependent variables and create Makefiles.
+-# Generated by GNU Autoconf 2.59 for ncbi-tools++ 0.0.
++# Generated by GNU Autoconf 2.60 for ncbi-tools++ 0.0.
+ #
+ # Report bugs to <cpp-core@ncbi.nlm.nih.gov>.
+ #
+-# Copyright (C) 2003 Free Software Foundation, Inc.
++# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
++# 2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
+ # This configure script is free software; the Free Software Foundation
+ # gives unlimited permission to copy, distribute and modify it.
+-# Support unset when possible.
+-if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+- as_unset=unset
+-else
+- as_unset=false
+-fi
+-
+ ## --------------------- ##
+ ## M4sh Initialization. ##
+ ## --------------------- ##
+@@ -25,11 +19,35 @@
+ # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+-elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
+- set -o posix
++ setopt NO_GLOB_SUBST
++else
++ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
+ fi
++BIN_SH=xpg4; export BIN_SH # for Tru64
+ DUALCASE=1; export DUALCASE # for MKS sh
+
++
++# PATH needs CR
++# Avoid depending upon Character Ranges.
++as_cr_letters='abcdefghijklmnopqrstuvwxyz'
++as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
++as_cr_Letters=$as_cr_letters$as_cr_LETTERS
++as_cr_digits='0123456789'
++as_cr_alnum=$as_cr_Letters$as_cr_digits
++
++# The user is always right.
++if test "${PATH_SEPARATOR+set}" != set; then
++ echo "#! /bin/sh" >conf$$.sh
++ echo "exit 0" >>conf$$.sh
++ chmod +x conf$$.sh
++ if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
++ PATH_SEPARATOR=';'
++ else
++ PATH_SEPARATOR=:
++ fi
++ rm -f conf$$.sh
++fi
++
+ # Support unset when possible.
+ if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+ as_unset=unset
+@@ -38,8 +56,43 @@
+ fi
+
+
++# IFS
++# We need space, tab and new line, in precisely that order. Quoting is
++# there to prevent editors from complaining about space-tab.
++# (If _AS_PATH_WALK were called with IFS unset, it would disable word
++# splitting by setting IFS to empty value.)
++as_nl='
++'
++IFS=" "" $as_nl"
++
++# Find who we are. Look in the path if we contain no directory separator.
++case $0 in
++ *[\\/]* ) as_myself=$0 ;;
++ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
++done
++IFS=$as_save_IFS
++
++ ;;
++esac
++# We did not find ourselves, most probably we were run as `sh COMMAND'
++# in which case we are not to be found in the path.
++if test "x$as_myself" = x; then
++ as_myself=$0
++fi
++if test ! -f "$as_myself"; then
++ echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
++ { (exit 1); exit 1; }
++fi
++
+ # Work around bugs in pre-3.0 UWIN ksh.
+-$as_unset ENV MAIL MAILPATH
++for as_var in ENV MAIL MAILPATH
++do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
++done
+ PS1='$ '
+ PS2='> '
+ PS4='+ '
+@@ -53,18 +106,19 @@
+ if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
+ eval $as_var=C; export $as_var
+ else
+- $as_unset $as_var
++ ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+ fi
+ done
+
+ # Required to use basename.
+-if expr a : '\(a\)' >/dev/null 2>&1; then
++if expr a : '\(a\)' >/dev/null 2>&1 &&
++ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
+ else
+ as_expr=false
+ fi
+
+-if (basename /) >/dev/null 2>&1 && test "X`basename / 2>&1`" = "X/"; then
++if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
+ as_basename=basename
+ else
+ as_basename=false
+@@ -72,160 +126,394 @@
+
+
+ # Name of the executable.
+-as_me=`$as_basename "$0" ||
++as_me=`$as_basename -- "$0" ||
+ $as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
+ X"$0" : 'X\(//\)$' \| \
+- X"$0" : 'X\(/\)$' \| \
+- . : '\(.\)' 2>/dev/null ||
++ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+ echo X/"$0" |
+- sed '/^.*\/\([^/][^/]*\)\/*$/{ s//\1/; q; }
+- /^X\/\(\/\/\)$/{ s//\1/; q; }
+- /^X\/\(\/\).*/{ s//\1/; q; }
++ sed '/^.*\/\([^/][^/]*\)\/*$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\).*/{
++ s//\1/
++ q
++ }
+ s/.*/./; q'`
+
++# CDPATH.
++$as_unset CDPATH
+
+-# PATH needs CR, and LINENO needs CR and PATH.
+-# Avoid depending upon Character Ranges.
+-as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+-as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+-as_cr_digits='0123456789'
+-as_cr_alnum=$as_cr_Letters$as_cr_digits
++$as_unset ZSH_VERSION || test "${ZSH_VERSION+set}" != set || { ZSH_VERSION=; export ZSH_VERSION; }
+
+-# The user is always right.
+-if test "${PATH_SEPARATOR+set}" != set; then
+- echo "#! /bin/sh" >conf$$.sh
+- echo "exit 0" >>conf$$.sh
+- chmod +x conf$$.sh
+- if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
+- PATH_SEPARATOR=';'
++if test "x$CONFIG_SHELL" = x; then
++ if (eval "test -z \"\${ZSH_VERSION+set}\" || exit \$?; :") 2>/dev/null; then
++ as_have_required=yes
+ else
+- PATH_SEPARATOR=:
++ as_have_required=no
+ fi
+- rm -f conf$$.sh
++
++ if test $as_have_required = yes && (eval "test -z \"\${ZSH_VERSION+set}\" || exit \$?; :
++(as_func_return () {
++ (exit \$1)
++}
++as_func_success () {
++ as_func_return 0
++}
++as_func_failure () {
++ as_func_return 1
++}
++as_func_ret_success () {
++ return 0
++}
++as_func_ret_failure () {
++ return 1
++}
++
++exitcode=0
++if as_func_success; then
++ :
++else
++ exitcode=1
++ echo as_func_success failed.
+ fi
+
++if as_func_failure; then
++ exitcode=1
++ echo as_func_failure succeeded.
++fi
+
+- as_lineno_1=$LINENO
+- as_lineno_2=$LINENO
+- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
+- test "x$as_lineno_1" != "x$as_lineno_2" &&
+- test "x$as_lineno_3" = "x$as_lineno_2" || {
+- # Find who we are. Look in the path if we contain no path at all
+- # relative or not.
+- case $0 in
+- *[\\/]* ) as_myself=$0 ;;
+- *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-for as_dir in $PATH
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+-done
++if as_func_ret_success; then
++ :
++else
++ exitcode=1
++ echo as_func_ret_success failed.
++fi
+
+- ;;
+- esac
+- # We did not find ourselves, most probably we were run as `sh COMMAND'
+- # in which case we are not to be found in the path.
+- if test "x$as_myself" = x; then
+- as_myself=$0
++if as_func_ret_failure; then
++ exitcode=1
++ echo as_func_ret_failure succeeded.
+ fi
+- if test ! -f "$as_myself"; then
+- { echo "$as_me: error: cannot find myself; rerun with an absolute path" >&2
+- { (exit 1); exit 1; }; }
++
++if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
++ :
++else
++ exitcode=1
++ echo positional parameters were not saved.
+ fi
+- case $CONFIG_SHELL in
+- '')
+- $as_unset ZSH_VERSION || test "${ZSH_VERSION+set}" != set || { ZSH_VERSION=; export ZSH_VERSION; }
+- for as_base in sh ksh sh5 bash; do
++
++test \$exitcode = 0) || { (exit 1); exit 1; }
++
++(
++ as_lineno_1=\$LINENO
++ as_lineno_2=\$LINENO
++ test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
++ test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
++") 2> /dev/null; then
++ :
++else
++ as_candidate_shells=
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
++for as_dir in /usr/bin/posix$PATH_SEPARATOR/bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
+ do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ case $as_dir in
+ /*)
+- if ("$as_dir/$as_base" -c \
+- 'test -z "$ZSH_VERSION" && {
++ for as_base in sh ksh sh5 bash; do
++ as_candidate_shells="$as_candidate_shells $as_dir/$as_base"
++ done;;
++ esac
++done
++IFS=$as_save_IFS
++
++
++ for as_shell in $as_candidate_shells $SHELL; do
++ # Try only shells that exist, to save several forks.
++ if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
++ { ("$as_shell") 2> /dev/null <<\_ASEOF
++# Be Bourne compatible
++if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
++ emulate sh
++ NULLCMD=:
++ # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
++ # is contrary to our usage. Disable this feature.
++ alias -g '${1+"$@"}'='"$@"'
++ setopt NO_GLOB_SUBST
++else
++ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
++fi
++BIN_SH=xpg4; export BIN_SH # for Tru64
++DUALCASE=1; export DUALCASE # for MKS sh
++
++test -z "${ZSH_VERSION+set}" || exit $?; :
++_ASEOF
++}; then
++ CONFIG_SHELL=$as_shell
++ as_have_required=yes
++ if { "$as_shell" 2> /dev/null <<\_ASEOF
++# Be Bourne compatible
++if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
++ emulate sh
++ NULLCMD=:
++ # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
++ # is contrary to our usage. Disable this feature.
++ alias -g '${1+"$@"}'='"$@"'
++ setopt NO_GLOB_SUBST
++else
++ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
++fi
++BIN_SH=xpg4; export BIN_SH # for Tru64
++DUALCASE=1; export DUALCASE # for MKS sh
++
++test -z "${ZSH_VERSION+set}" || exit $?; :
++(as_func_return () {
++ (exit $1)
++}
++as_func_success () {
++ as_func_return 0
++}
++as_func_failure () {
++ as_func_return 1
++}
++as_func_ret_success () {
++ return 0
++}
++as_func_ret_failure () {
++ return 1
++}
++
++exitcode=0
++if as_func_success; then
++ :
++else
++ exitcode=1
++ echo as_func_success failed.
++fi
++
++if as_func_failure; then
++ exitcode=1
++ echo as_func_failure succeeded.
++fi
++
++if as_func_ret_success; then
++ :
++else
++ exitcode=1
++ echo as_func_ret_success failed.
++fi
++
++if as_func_ret_failure; then
++ exitcode=1
++ echo as_func_ret_failure succeeded.
++fi
++
++if ( set x; as_func_ret_success y && test x = "$1" ); then
++ :
++else
++ exitcode=1
++ echo positional parameters were not saved.
++fi
++
++test $exitcode = 0) || { (exit 1); exit 1; }
++
++(
+ as_lineno_1=$LINENO
+ as_lineno_2=$LINENO
+- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
+ test "x$as_lineno_1" != "x$as_lineno_2" &&
+- test "x$as_lineno_3" = "x$as_lineno_2" ; }') 2>/dev/null
+- then
+- $as_unset BASH_ENV || test "${BASH_ENV+set}" != set || { BASH_ENV=; export BASH_ENV; }
+- $as_unset ENV || test "${ENV+set}" != set || { ENV=; export ENV; }
+- CONFIG_SHELL=$as_dir/$as_base
+- export CONFIG_SHELL
+- exec "$CONFIG_SHELL" "$0" ${1+"$@"}
+- fi;;
+- esac
++ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
++
++_ASEOF
++}; then
++ break
++fi
++
++fi
++
+ done
++
++ if test "x$CONFIG_SHELL" != x; then
++ for as_var in BASH_ENV ENV
++ do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+ done
+-;;
+- esac
++ export CONFIG_SHELL
++ exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
++fi
++
++
++ if test $as_have_required = no; then
++ echo This script requires a shell more modern than all the
++ echo shells that I found on your system. Please install a
++ echo modern shell, or manually run the script under such a
++ echo shell if you do have one.
++ { (exit 1); exit 1; }
++fi
++
++
++fi
++
++fi
++
++# Support unset when possible.
++if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
++ as_unset=unset
++else
++ as_unset=false
++fi
++
++
++
++(eval "test -z \"\${ZSH_VERSION+set}\" || exit \$?; as_func_return () {
++ (exit \$1)
++}
++as_func_success () {
++ as_func_return 0
++}
++as_func_failure () {
++ as_func_return 1
++}
++as_func_ret_success () {
++ return 0
++}
++as_func_ret_failure () {
++ return 1
++}
++
++exitcode=0
++if as_func_success; then
++ :
++else
++ exitcode=1
++ echo as_func_success failed.
++fi
++
++if as_func_failure; then
++ exitcode=1
++ echo as_func_failure succeeded.
++fi
++
++if as_func_ret_success; then
++ :
++else
++ exitcode=1
++ echo as_func_ret_success failed.
++fi
++
++if as_func_ret_failure; then
++ exitcode=1
++ echo as_func_ret_failure succeeded.
++fi
++
++if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
++ :
++else
++ exitcode=1
++ echo positional parameters were not saved.
++fi
++
++test \$exitcode = 0") || {
++ echo No shell found that supports shell functions.
++ echo Please tell autoconf@gnu.org about your system,
++ echo including any error possibly output before this
++ echo message
++}
++
++
++
++ as_lineno_1=$LINENO
++ as_lineno_2=$LINENO
++ test "x$as_lineno_1" != "x$as_lineno_2" &&
++ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
+
+ # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
+ # uniformly replaced by the line number. The first 'sed' inserts a
+- # line-number line before each line; the second 'sed' does the real
+- # work. The second script uses 'N' to pair each line-number line
+- # with the numbered line, and appends trailing '-' during
+- # substitution so that $LINENO is not a special case at line end.
++ # line-number line after each line using $LINENO; the second 'sed'
++ # does the real work. The second script uses 'N' to pair each
++ # line-number line with the line containing $LINENO, and appends
++ # trailing '-' during substitution so that $LINENO is not a special
++ # case at line end.
+ # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
+- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
+- sed '=' <$as_myself |
++ # scripts with optimization help from Paolo Bonzini. Blame Lee
++ # E. McMahon (1931-1989) for sed's syntax. :-)
++ sed -n '
++ p
++ /[$]LINENO/=
++ ' <$as_myself |
+ sed '
++ s/[$]LINENO.*/&-/
++ t lineno
++ b
++ :lineno
+ N
+- s,$,-,
+ : loop
+- s,^\(['$as_cr_digits']*\)\(.*\)[$]LINENO\([^'$as_cr_alnum'_]\),\1\2\1\3,
++ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
+ t loop
+- s,-$,,
+- s,^['$as_cr_digits']*\n,,
++ s/-\n.*//
+ ' >$as_me.lineno &&
+- chmod +x $as_me.lineno ||
++ chmod +x "$as_me.lineno" ||
+ { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
+ { (exit 1); exit 1; }; }
+
+ # Don't try to exec as it changes $[0], causing all sort of problems
+ # (the dirname of $[0] is not the place where we might find the
+- # original and so on. Autoconf is especially sensible to this).
+- . ./$as_me.lineno
++ # original and so on. Autoconf is especially sensitive to this).
++ . "./$as_me.lineno"
+ # Exit status is that of the last command.
+ exit
+ }
+
+
+-case `echo "testing\c"; echo 1,2,3`,`echo -n testing; echo 1,2,3` in
+- *c*,-n*) ECHO_N= ECHO_C='
+-' ECHO_T=' ' ;;
+- *c*,* ) ECHO_N=-n ECHO_C= ECHO_T= ;;
+- *) ECHO_N= ECHO_C='\c' ECHO_T= ;;
++if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
++ as_dirname=dirname
++else
++ as_dirname=false
++fi
++
++ECHO_C= ECHO_N= ECHO_T=
++case `echo -n x` in
++-n*)
++ case `echo 'x\c'` in
++ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
++ *) ECHO_C='\c';;
++ esac;;
++*)
++ ECHO_N='-n';;
+ esac
+
+-if expr a : '\(a\)' >/dev/null 2>&1; then
++if expr a : '\(a\)' >/dev/null 2>&1 &&
++ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
+ else
+ as_expr=false
+ fi
+
+ rm -f conf$$ conf$$.exe conf$$.file
++if test -d conf$$.dir; then
++ rm -f conf$$.dir/conf$$.file
++else
++ rm -f conf$$.dir
++ mkdir conf$$.dir
++fi
+ echo >conf$$.file
+ if ln -s conf$$.file conf$$ 2>/dev/null; then
+- # We could just check for DJGPP; but this test a) works b) is more generic
+- # and c) will remain valid once DJGPP supports symlinks (DJGPP 2.04).
+- if test -f conf$$.exe; then
+- # Don't use ln at all; we don't have any links
+- as_ln_s='cp -p'
+- else
+ as_ln_s='ln -s'
+- fi
++ # ... but there are two gotchas:
++ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
++ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
++ # In both cases, we have to default to `cp -p'.
++ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
++ as_ln_s='cp -p'
+ elif ln conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s=ln
+ else
+ as_ln_s='cp -p'
+ fi
+-rm -f conf$$ conf$$.exe conf$$.file
++rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
++rmdir conf$$.dir 2>/dev/null
+
+ if mkdir -p . 2>/dev/null; then
+ as_mkdir_p=:
+@@ -234,7 +522,19 @@
+ as_mkdir_p=false
+ fi
+
+-as_executable_p="test -f"
++# Find out whether ``test -x'' works. Don't use a zero-byte file, as
++# systems may use methods other than mode bits to determine executability.
++cat >conf$$.file <<_ASEOF
++#! /bin/sh
++exit 0
++_ASEOF
++chmod +x conf$$.file
++if test -x conf$$.file >/dev/null 2>&1; then
++ as_executable_p="test -x"
++else
++ as_executable_p=:
++fi
++rm -f conf$$.file
+
+ # Sed expression to map a string onto a valid CPP name.
+ as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+@@ -243,39 +543,27 @@
+ as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+
+
+-# IFS
+-# We need space, tab and new line, in precisely that order.
+-as_nl='
+-'
+-IFS=" $as_nl"
+-
+-# CDPATH.
+-$as_unset CDPATH
+
++exec 7<&0 </dev/null 6>&1
+
+ # Name of the host.
+ # hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
+ # so uname gets run too.
+ ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
+
+-exec 6>&1
+-
+ #
+ # Initializations.
+ #
+ ac_default_prefix=/usr/local
++ac_clean_files=
+ ac_config_libobj_dir=.
++LIBOBJS=
+ cross_compiling=no
+ subdirs=
+ MFLAGS=
+ MAKEFLAGS=
+ SHELL=${CONFIG_SHELL-/bin/sh}
+
+-# Maximum number of lines to put in a shell here document.
+-# This variable seems obsolete. It should probably be removed, and
+-# only ac_max_sed_lines should be used.
+-: ${ac_max_here_lines=38}
+-
+ # Identity of this package.
+ PACKAGE_NAME='ncbi-tools++'
+ PACKAGE_TARNAME='ncbi-tools--'
+@@ -312,17 +600,441 @@
+ #endif
+ #if HAVE_INTTYPES_H
+ # include <inttypes.h>
+-#else
++#endif
+ # if HAVE_STDINT_H
+ # include <stdint.h>
+ # endif
+-#endif
+ #if HAVE_UNISTD_H
+ # include <unistd.h>
+ #endif"
+
+-ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROJECTS build build_cpu build_vendor build_os host host_cpu host_vendor host_os INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX MT_SFX DLL DLL_LIB_SETTING IF_WITH_DLL UNLESS_WITH_DLL STATIC USUAL_AND_DLL USUAL_AND_LIB LN_S RANLIB ac_ct_RANLIB AR STRIP DISTCC CCACHE TAIL TOUCH EGREP VALGRIND_PATH CXXCPP TCHECK_CL AMQ CPP Z_INCLUDE Z_LIBS BZ2_INCLUDE BZ2_LIBS LZO_INCLUDE LZO_LIBS PCRE_INCLUDE PCRE_LIBS LIBGCRYPT_CONFIG GCRYPT_INCLUDE GCRYPT_LIBS LIBGNUTLS_CONFIG GNUTLS_INCLUDE GNUTLS_LIBS OPENSSL_INCLUDE OPENSSL_LIBS KRB5_CONFIG KRB5_INCLUDE KRB5_LIBS CURL_INCLUDE CURL_LIBS FTD
S64_INCLUDE FTDS64_LIBS FTDS64_LIB FTDS64_CTLIB_INCLUDE FTDS64_CTLIB_LIBS FTDS64_CTLIB_LIB FTDS_INCLUDE FTDS_LIBS FTDS_LIB freetds ftds64 mysql_config PYTHON PYTHON_INCLUDE PYTHON_LIBS PYTHON23 PYTHON23_INCLUDE PYTHON23_LIBS PYTHON24 PYTHON24_INCLUDE PYTHON24_LIBS PYTHON25 PYTHON25_INCLUDE PYTHON25_LIBS PERL _ACJNI_JAVAC X_CFLAGS X_PRE_LIBS X_LIBS X_EXTRA_LIBS wxconf EXPAT_INCLUDE EXPAT_LIBS SABLOT_INCLUDE SABLOT_LIBS LIBXML_INCLUDE LIBXML_LIBS LIBXSLT_INCLUDE LIBXSLT_LIBS XSLTPROC LIBEXSLT_INCLUDE LIBEXSLT_LIBS SQLITE3_INCLUDE SQLITE3_LIBS OECHEM_INCLUDE OECHEM_LIBS SGE_INCLUDE SGE_LIBS MUPARSER_INCLUDE MUPARSER_LIBS HDF5_INCLUDE HDF5_LIBS JPEG_INCLUDE JPEG_LIBS PNG_INCLUDE PNG_LIBS TIFF_INCLUDE TIFF_LIBS UNGIF_INCLUDE UNGIF_LIBS GIF_INCLUDE GIF_LIBS XPM_INCLUDE XPM_LIBS freetype_config FTGL_INCLUDE FTGL_LIBS MAGIC_INCLUDE MAGIC_LIBS MIMETIC_INCLUDE MIMETIC_LIBS signature build_root top_srcdir srcdir status_dir builddir runpath ncbi_runpath c_ncbi_runpath LINK C_LINK TAIL_N EGREP_Q
FAST_CFLAGS FAST_CXXFLAGS OBJCXX_CXXFLAGS DEPFLAGS DEPFLAGS_POST FAST_LDFLAGS APP_LDFLAGS DLL_LDFLAGS C_LIBS OBJCXX_LIBS GCCPCH RUNPATH_ORIGIN NO_STRICT_ALIASING D_SFX DEBUG_SFX LIB_OR_DLL FORCE_STATIC_LIB APP_LIB_SETTING APP_LIBS_SETTING LINK_DLL has_dll_loadable LINK_LOADABLE CFLAGS_DLL CXXFLAGS_DLL ALLOW_UNDEF FORBID_UNDEF OPT_GROUPS local_lbsm ncbi_crypt CONNEXT XCONNEXT serial bdb dbapi objects gui algo app internal sra check CHECK_ARG CHECK_TOOLS CHECK_TIMEOUT_MULT CHECK_OS_NAME FEATURES script_shell make_shell obj_ext lib_pre lib_l_pre lib_ext dll_ext loadable_ext lib_l_ext exe_ext f_compile f_outobj f_outlib f_libpath f_runpath f_outexe BDB_LIB BDB_CACHE_LIB DBAPI_DRIVER DBAPI_CTLIB DBAPI_DBLIB DBAPI_MYSQL DBAPI_ODBC THREAD_LIBS NCBIATOMIC_LIB NETWORK_LIBS NETWORK_PURE_LIBS RESOLVER_LIBS MATH_LIBS KSTAT_LIBS RPCSVC_LIBS CRYPT_LIBS DL_LIBS RT_LIBS UUID_LIBS DEMANGLE_LIBS ICONV_LIBS Z_LIB BZ2_LIB PCREPOSIX_LIBS PCRE_LIB OPENSSL_STATIC_LIBS TLS_INCLUDE TLS_LIBS SYBASE_PATH SYB
ASE_LCL_PATH SYBASE_INCLUDE SYBASE_LIBS SYBASE_DLLS SYBASE_DBLIBS MYSQL_INCLUDE MYSQL_LIBS BERKELEYDB_INCLUDE BERKELEYDB_LIBS BERKELEYDB_STATIC_LIBS BERKELEYDB_CXX_LIBS BERKELEYDB_CXX_STATIC_LIBS ODBC_INCLUDE ODBC_LIBS BOOST_INCLUDE BOOST_LIBPATH BOOST_TAG BOOST_REGEX_LIBS BOOST_REGEX_STATIC_LIBS BOOST_SYSTEM_LIBS BOOST_SYSTEM_STATIC_LIBS BOOST_TEST_PEM_LIBS BOOST_TEST_PEM_STATIC_LIBS BOOST_TEST_TEM_LIBS BOOST_TEST_TEM_STATIC_LIBS BOOST_TEST_UTF_LIBS BOOST_TEST_UTF_STATIC_LIBS BOOST_THREAD_LIBS BOOST_THREAD_STATIC_LIBS NCBI_C_INCLUDE NCBI_C_LIBPATH OPENGL_INCLUDE OPENGL_LIBS OPENGL_STATIC_LIBS OSMESA_INCLUDE OSMESA_LIBS OSMESA_STATIC_LIBS GLUT_INCLUDE GLUT_LIBS GLEW_INCLUDE GLEW_LIBS GLEW_STATIC_LIBS WXWIDGETS_INCLUDE WXWIDGETS_LIBS WXWIDGETS_STATIC_LIBS WXWIDGETS_GL_LIBS WXWIDGETS_GL_STATIC_LIBS WXWIDGETS_POST_LINK FASTCGI_INCLUDE FASTCGI_LIBS FASTCGI_OBJS NCBI_SSS_INCLUDE NCBI_SSS_LIBPATH LIBSSSUTILS LIBSSSDB sssutils SP_INCLUDE SP_LIBS ORBACUS_INCLUDE ORBACUS_LIBPATH LIBOB LIBIMR
ICU_CONFIG ICU_INCLUDE ICU_LIBS ICU_STATIC_LIBS EXPAT_STATIC_LIBS SABLOT_STATIC_LIBS LIBXML_STATIC_LIBS LIBXSLT_STATIC_LIBS LIBEXSLT_STATIC_LIBS XERCES_INCLUDE XERCES_LIBS XERCES_STATIC_LIBS XALAN_INCLUDE XALAN_LIBS XALAN_STATIC_LIBS ZORBA_INCLUDE ZORBA_LIBS ZORBA_STATIC_LIBS SQLITE3_STATIC_LIBS FREETYPE_INCLUDE FREETYPE_LIBS ncbi_xreader_pubseqos ncbi_xreader_pubseqos2 UNLESS_PUBSEQOS PERL_INCLUDE PERL_LIBS JDK_PATH JDK_INCLUDE ncbi_java NCBI_C_ncbi BINCOPY APP_NOCOPY APP_OR_NULL IF_REBUILDING_LIBS IF_REBUILDING_CONDITIONALLY IF_DEACTIVATING configurables_mfname CC_FILTER CXX_FILTER AR_FILTER LINK_FILTER CC_WRAPPER CXX_WRAPPER AR_WRAPPER LINK_WRAPPER KeepStateTarget Rules serial_ws50_rtti_kludge ncbicntr UNIX_SRC UNIX_USR_PROJ compiler compiler_root compiler_version COMPILER OSTYPE NCBI_PLATFORM_BITS LIBOBJS LTLIBOBJS'
++ac_subst_vars='SHELL
++PATH_SEPARATOR
++PACKAGE_NAME
++PACKAGE_TARNAME
++PACKAGE_VERSION
++PACKAGE_STRING
++PACKAGE_BUGREPORT
++exec_prefix
++prefix
++program_transform_name
++bindir
++sbindir
++libexecdir
++datarootdir
++datadir
++sysconfdir
++sharedstatedir
++localstatedir
++includedir
++oldincludedir
++docdir
++infodir
++htmldir
++dvidir
++pdfdir
++psdir
++libdir
++localedir
++mandir
++DEFS
++ECHO_C
++ECHO_N
++ECHO_T
++LIBS
++build_alias
++host_alias
++target_alias
++PROJECTS
++build
++build_cpu
++build_vendor
++build_os
++host
++host_cpu
++host_vendor
++host_os
++INSTALL_PROGRAM
++INSTALL_SCRIPT
++INSTALL_DATA
++CC
++CFLAGS
++LDFLAGS
++CPPFLAGS
++ac_ct_CC
++EXEEXT
++OBJEXT
++CXX
++CXXFLAGS
++ac_ct_CXX
++MT_SFX
++DLL
++DLL_LIB_SETTING
++IF_WITH_DLL
++UNLESS_WITH_DLL
++STATIC
++USUAL_AND_DLL
++USUAL_AND_LIB
++LN_S
++RANLIB
++AR
++STRIP
++DISTCC
++CCACHE
++TAIL
++TOUCH
++GREP
++EGREP
++VALGRIND_PATH
++LDD
++CXXCPP
++TCHECK_CL
++AMQ
++CPP
++Z_INCLUDE
++Z_LIBS
++BZ2_INCLUDE
++BZ2_LIBS
++LZO_INCLUDE
++LZO_LIBS
++PCRE_INCLUDE
++PCRE_LIBS
++LIBGCRYPT_CONFIG
++GCRYPT_INCLUDE
++GCRYPT_LIBS
++LIBGNUTLS_CONFIG
++GNUTLS_INCLUDE
++GNUTLS_LIBS
++OPENSSL_INCLUDE
++OPENSSL_LIBS
++KRB5_CONFIG
++KRB5_INCLUDE
++KRB5_LIBS
++CURL_INCLUDE
++CURL_LIBS
++FTDS64_INCLUDE
++FTDS64_LIBS
++FTDS64_LIB
++FTDS64_CTLIB_INCLUDE
++FTDS64_CTLIB_LIBS
++FTDS64_CTLIB_LIB
++FTDS_INCLUDE
++FTDS_LIBS
++FTDS_LIB
++freetds
++ftds64
++mysql_config
++PYTHON
++PYTHON_INCLUDE
++PYTHON_LIBS
++PYTHON23
++PYTHON23_INCLUDE
++PYTHON23_LIBS
++PYTHON24
++PYTHON24_INCLUDE
++PYTHON24_LIBS
++PYTHON25
++PYTHON25_INCLUDE
++PYTHON25_LIBS
++PERL
++_ACJNI_JAVAC
++XMKMF
++X_CFLAGS
++X_PRE_LIBS
++X_LIBS
++X_EXTRA_LIBS
++wxconf
++EXPAT_INCLUDE
++EXPAT_LIBS
++SABLOT_INCLUDE
++SABLOT_LIBS
++LIBXML_INCLUDE
++LIBXML_LIBS
++LIBXSLT_INCLUDE
++LIBXSLT_LIBS
++XSLTPROC
++LIBEXSLT_INCLUDE
++LIBEXSLT_LIBS
++SQLITE3_INCLUDE
++SQLITE3_LIBS
++OECHEM_INCLUDE
++OECHEM_LIBS
++SGE_INCLUDE
++SGE_LIBS
++MUPARSER_INCLUDE
++MUPARSER_LIBS
++HDF5_INCLUDE
++HDF5_LIBS
++JPEG_INCLUDE
++JPEG_LIBS
++PNG_INCLUDE
++PNG_LIBS
++TIFF_INCLUDE
++TIFF_LIBS
++UNGIF_INCLUDE
++UNGIF_LIBS
++GIF_INCLUDE
++GIF_LIBS
++XPM_INCLUDE
++XPM_LIBS
++freetype_config
++FTGL_INCLUDE
++FTGL_LIBS
++MAGIC_INCLUDE
++MAGIC_LIBS
++MIMETIC_INCLUDE
++MIMETIC_LIBS
++GSOAP_SOAPCPP2
++GSOAP_WSDL2H
++GSOAP_INCLUDE
++GSOAP_LIBS
++MONGODB_INCLUDE
++MONGODB_LIBS
++signature
++build_root
++top_srcdir
++srcdir
++status_dir
++builddir
++runpath
++ncbi_runpath
++c_ncbi_runpath
++LINK
++C_LINK
++TAIL_N
++EGREP_Q
++LDD_R
++FAST_CFLAGS
++FAST_CXXFLAGS
++OBJCXX_CXXFLAGS
++DEPFLAGS
++DEPFLAGS_POST
++FAST_LDFLAGS
++APP_LDFLAGS
++DLL_LDFLAGS
++C_LIBS
++OBJCXX_LIBS
++GCCPCH
++RUNPATH_ORIGIN
++NO_STRICT_ALIASING
++D_SFX
++DEBUG_SFX
++LIB_OR_DLL
++FORCE_STATIC_LIB
++APP_LIB_SETTING
++APP_LIBS_SETTING
++LINK_DLL
++has_dll_loadable
++LINK_LOADABLE
++CFLAGS_DLL
++CXXFLAGS_DLL
++ALLOW_UNDEF
++FORBID_UNDEF
++OPT_GROUPS
++local_lbsm
++ncbi_crypt
++CONNEXT
++XCONNEXT
++serial
++bdb
++dbapi
++objects
++gui
++algo
++app
++internal
++check
++CHECK_ARG
++CHECK_TOOLS
++CHECK_TIMEOUT_MULT
++CHECK_OS_NAME
++FEATURES
++script_shell
++make_shell
++obj_ext
++lib_pre
++lib_l_pre
++lib_ext
++dll_ext
++loadable_ext
++lib_l_ext
++exe_ext
++f_compile
++f_outobj
++f_outlib
++f_libpath
++f_runpath
++f_outexe
++BDB_LIB
++BDB_CACHE_LIB
++DBAPI_DRIVER
++DBAPI_CTLIB
++DBAPI_DBLIB
++DBAPI_MYSQL
++DBAPI_ODBC
++THREAD_LIBS
++NCBIATOMIC_LIB
++OPENMP_FLAGS
++NETWORK_LIBS
++NETWORK_PURE_LIBS
++RESOLVER_LIBS
++MATH_LIBS
++KSTAT_LIBS
++RPCSVC_LIBS
++CRYPT_LIBS
++DL_LIBS
++RT_LIBS
++UUID_LIBS
++DEMANGLE_LIBS
++ICONV_LIBS
++Z_LIB
++BZ2_LIB
++PCREPOSIX_LIBS
++PCRE_LIB
++OPENSSL_STATIC_LIBS
++TLS_INCLUDE
++TLS_LIBS
++SYBASE_PATH
++SYBASE_LCL_PATH
++SYBASE_INCLUDE
++SYBASE_LIBS
++SYBASE_DLLS
++SYBASE_DBLIBS
++MYSQL_INCLUDE
++MYSQL_LIBS
++BERKELEYDB_INCLUDE
++BERKELEYDB_LIBS
++BERKELEYDB_STATIC_LIBS
++BERKELEYDB_CXX_LIBS
++BERKELEYDB_CXX_STATIC_LIBS
++ODBC_INCLUDE
++ODBC_LIBS
++BOOST_INCLUDE
++BOOST_LIBPATH
++BOOST_TAG
++BOOST_FILESYSTEM_LIBS
++BOOST_FILESYSTEM_STATIC_LIBS
++BOOST_REGEX_LIBS
++BOOST_REGEX_STATIC_LIBS
++BOOST_SYSTEM_LIBS
++BOOST_SYSTEM_STATIC_LIBS
++BOOST_TEST_PEM_LIBS
++BOOST_TEST_PEM_STATIC_LIBS
++BOOST_TEST_TEM_LIBS
++BOOST_TEST_TEM_STATIC_LIBS
++BOOST_TEST_UTF_LIBS
++BOOST_TEST_UTF_STATIC_LIBS
++BOOST_THREAD_LIBS
++BOOST_THREAD_STATIC_LIBS
++NCBI_C_INCLUDE
++NCBI_C_LIBPATH
++OPENGL_INCLUDE
++OPENGL_LIBS
++OPENGL_STATIC_LIBS
++OSMESA_INCLUDE
++OSMESA_LIBS
++OSMESA_STATIC_LIBS
++GLUT_INCLUDE
++GLUT_LIBS
++GLEW_INCLUDE
++GLEW_LIBS
++GLEW_STATIC_LIBS
++WXWIDGETS_INCLUDE
++WXWIDGETS_LIBS
++WXWIDGETS_STATIC_LIBS
++WXWIDGETS_GL_LIBS
++WXWIDGETS_GL_STATIC_LIBS
++WXWIDGETS_POST_LINK
++FASTCGI_INCLUDE
++FASTCGI_LIBS
++FASTCGI_OBJS
++NCBI_SSS_INCLUDE
++NCBI_SSS_LIBPATH
++LIBSSSUTILS
++LIBSSSDB
++sssutils
++SP_INCLUDE
++SP_LIBS
++ORBACUS_INCLUDE
++ORBACUS_LIBPATH
++LIBOB
++LIBIMR
++ICU_CONFIG
++ICU_INCLUDE
++ICU_LIBS
++ICU_STATIC_LIBS
++EXPAT_STATIC_LIBS
++SABLOT_STATIC_LIBS
++LIBXML_STATIC_LIBS
++LIBXSLT_STATIC_LIBS
++LIBEXSLT_STATIC_LIBS
++XERCES_INCLUDE
++XERCES_LIBS
++XERCES_STATIC_LIBS
++XALAN_INCLUDE
++XALAN_LIBS
++XALAN_STATIC_LIBS
++ZORBA_INCLUDE
++ZORBA_LIBS
++ZORBA_STATIC_LIBS
++SQLITE3_STATIC_LIBS
++FREETYPE_INCLUDE
++FREETYPE_LIBS
++GSOAP_PATH
++MONGODB_STATIC_LIBS
++ncbi_xreader_pubseqos
++ncbi_xreader_pubseqos2
++UNLESS_PUBSEQOS
++PERL_INCLUDE
++PERL_LIBS
++JDK_PATH
++JDK_INCLUDE
++ncbi_java
++NCBI_C_ncbi
++BINCOPY
++APP_NOCOPY
++APP_OR_NULL
++IF_REBUILDING_LIBS
++IF_REBUILDING_CONDITIONALLY
++IF_DEACTIVATING
++configurables_mfname
++CC_FILTER
++CXX_FILTER
++AR_FILTER
++LINK_FILTER
++CC_WRAPPER
++CXX_WRAPPER
++AR_WRAPPER
++LINK_WRAPPER
++KeepStateTarget
++Rules
++serial_ws50_rtti_kludge
++ncbicntr
++UNIX_SRC
++UNIX_USR_PROJ
++compiler
++compiler_root
++compiler_version
++COMPILER
++OSTYPE
++NCBI_PLATFORM_BITS
++LIBOBJS
++LTLIBOBJS'
+ ac_subst_files=''
++ ac_precious_vars='build_alias
++host_alias
++target_alias
++CC
++CFLAGS
++LDFLAGS
++CPPFLAGS
++CXX
++CXXFLAGS
++CCC
++CXXCPP
++CPP
++XMKMF'
++
+
+ # Initialize some variables set by options.
+ ac_init_help=
+@@ -349,34 +1061,48 @@
+ # and all the variables that are supposed to be based on exec_prefix
+ # by default will actually change.
+ # Use braces instead of parens because sh, perl, etc. also accept them.
++# (The list follows the same order as the GNU Coding Standards.)
+ bindir='${exec_prefix}/bin'
+ sbindir='${exec_prefix}/sbin'
+ libexecdir='${exec_prefix}/libexec'
+-datadir='${prefix}/share'
++datarootdir='${prefix}/share'
++datadir='${datarootdir}'
+ sysconfdir='${prefix}/etc'
+ sharedstatedir='${prefix}/com'
+ localstatedir='${prefix}/var'
+-libdir='${exec_prefix}/lib'
+ includedir='${prefix}/include'
+ oldincludedir='/usr/include'
+-infodir='${prefix}/info'
+-mandir='${prefix}/man'
++docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
++infodir='${datarootdir}/info'
++htmldir='${docdir}'
++dvidir='${docdir}'
++pdfdir='${docdir}'
++psdir='${docdir}'
++libdir='${exec_prefix}/lib'
++localedir='${datarootdir}/locale'
++mandir='${datarootdir}/man'
+
+ ac_prev=
++ac_dashdash=
+ for ac_option
+ do
+ # If the previous option needs an argument, assign it.
+ if test -n "$ac_prev"; then
+- eval "$ac_prev=\$ac_option"
++ eval $ac_prev=\$ac_option
+ ac_prev=
+ continue
+ fi
+
+- ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
++ case $ac_option in
++ *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
++ *) ac_optarg=yes ;;
++ esac
+
+ # Accept the important Cygnus configure options, so we can diagnose typos.
+
+- case $ac_option in
++ case $ac_dashdash$ac_option in
++ --)
++ ac_dashdash=yes ;;
+
+ -bindir | --bindir | --bindi | --bind | --bin | --bi)
+ ac_prev=bindir ;;
+@@ -398,12 +1124,18 @@
+ --config-cache | -C)
+ cache_file=config.cache ;;
+
+- -datadir | --datadir | --datadi | --datad | --data | --dat | --da)
++ -datadir | --datadir | --datadi | --datad)
+ ac_prev=datadir ;;
+- -datadir=* | --datadir=* | --datadi=* | --datad=* | --data=* | --dat=* \
+- | --da=*)
++ -datadir=* | --datadir=* | --datadi=* | --datad=*)
+ datadir=$ac_optarg ;;
+
++ -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
++ | --dataroo | --dataro | --datar)
++ ac_prev=datarootdir ;;
++ -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
++ | --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
++ datarootdir=$ac_optarg ;;
++
+ -disable-* | --disable-*)
+ ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
+ # Reject names that are not valid shell variable names.
+@@ -411,7 +1143,17 @@
+ { echo "$as_me: error: invalid feature name: $ac_feature" >&2
+ { (exit 1); exit 1; }; }
+ ac_feature=`echo $ac_feature | sed 's/-/_/g'`
+- eval "enable_$ac_feature=no" ;;
++ eval enable_$ac_feature=no ;;
++
++ -docdir | --docdir | --docdi | --doc | --do)
++ ac_prev=docdir ;;
++ -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
++ docdir=$ac_optarg ;;
++
++ -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
++ ac_prev=dvidir ;;
++ -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
++ dvidir=$ac_optarg ;;
+
+ -enable-* | --enable-*)
+ ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
+@@ -420,11 +1162,7 @@
+ { echo "$as_me: error: invalid feature name: $ac_feature" >&2
+ { (exit 1); exit 1; }; }
+ ac_feature=`echo $ac_feature | sed 's/-/_/g'`
+- case $ac_option in
+- *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
+- *) ac_optarg=yes ;;
+- esac
+- eval "enable_$ac_feature='$ac_optarg'" ;;
++ eval enable_$ac_feature=\$ac_optarg ;;
+
+ -exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
+ | --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
+@@ -451,6 +1189,12 @@
+ -host=* | --host=* | --hos=* | --ho=*)
+ host_alias=$ac_optarg ;;
+
++ -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
++ ac_prev=htmldir ;;
++ -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
++ | --ht=*)
++ htmldir=$ac_optarg ;;
++
+ -includedir | --includedir | --includedi | --included | --include \
+ | --includ | --inclu | --incl | --inc)
+ ac_prev=includedir ;;
+@@ -475,13 +1219,16 @@
+ | --libexe=* | --libex=* | --libe=*)
+ libexecdir=$ac_optarg ;;
+
++ -localedir | --localedir | --localedi | --localed | --locale)
++ ac_prev=localedir ;;
++ -localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
++ localedir=$ac_optarg ;;
++
+ -localstatedir | --localstatedir | --localstatedi | --localstated \
+- | --localstate | --localstat | --localsta | --localst \
+- | --locals | --local | --loca | --loc | --lo)
++ | --localstate | --localstat | --localsta | --localst | --locals)
+ ac_prev=localstatedir ;;
+ -localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
+- | --localstate=* | --localstat=* | --localsta=* | --localst=* \
+- | --locals=* | --local=* | --loca=* | --loc=* | --lo=*)
++ | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
+ localstatedir=$ac_optarg ;;
+
+ -mandir | --mandir | --mandi | --mand | --man | --ma | --m)
+@@ -546,6 +1293,16 @@
+ | --progr-tra=* | --program-tr=* | --program-t=*)
+ program_transform_name=$ac_optarg ;;
+
++ -pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
++ ac_prev=pdfdir ;;
++ -pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
++ pdfdir=$ac_optarg ;;
++
++ -psdir | --psdir | --psdi | --psd | --ps)
++ ac_prev=psdir ;;
++ -psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
++ psdir=$ac_optarg ;;
++
+ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
+ | -silent | --silent | --silen | --sile | --sil)
+ silent=yes ;;
+@@ -602,11 +1359,7 @@
+ { echo "$as_me: error: invalid package name: $ac_package" >&2
+ { (exit 1); exit 1; }; }
+ ac_package=`echo $ac_package| sed 's/-/_/g'`
+- case $ac_option in
+- *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
+- *) ac_optarg=yes ;;
+- esac
+- eval "with_$ac_package='$ac_optarg'" ;;
++ eval with_$ac_package=\$ac_optarg ;;
+
+ -without-* | --without-*)
+ ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
+@@ -615,7 +1368,7 @@
+ { echo "$as_me: error: invalid package name: $ac_package" >&2
+ { (exit 1); exit 1; }; }
+ ac_package=`echo $ac_package | sed 's/-/_/g'`
+- eval "with_$ac_package=no" ;;
++ eval with_$ac_package=no ;;
+
+ --x)
+ # Obsolete; use --with-x.
+@@ -646,8 +1399,7 @@
+ expr "x$ac_envvar" : ".*[^_$as_cr_alnum]" >/dev/null &&
+ { echo "$as_me: error: invalid variable name: $ac_envvar" >&2
+ { (exit 1); exit 1; }; }
+- ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`
+- eval "$ac_envvar='$ac_optarg'"
++ eval $ac_envvar=\$ac_optarg
+ export $ac_envvar ;;
+
+ *)
+@@ -667,27 +1419,19 @@
+ { (exit 1); exit 1; }; }
+ fi
+
+-# Be sure to have absolute paths.
+-for ac_var in exec_prefix prefix
+-do
+- eval ac_val=$`echo $ac_var`
+- case $ac_val in
+- [\\/$]* | ?:[\\/]* | NONE | '' ) ;;
+- *) { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
+- { (exit 1); exit 1; }; };;
+- esac
+-done
+-
+-# Be sure to have absolute paths.
+-for ac_var in bindir sbindir libexecdir datadir sysconfdir sharedstatedir \
+- localstatedir libdir includedir oldincludedir infodir mandir
++# Be sure to have absolute directory names.
++for ac_var in exec_prefix prefix bindir sbindir libexecdir datarootdir \
++ datadir sysconfdir sharedstatedir localstatedir includedir \
++ oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
++ libdir localedir mandir
+ do
+- eval ac_val=$`echo $ac_var`
++ eval ac_val=\$$ac_var
+ case $ac_val in
+- [\\/$]* | ?:[\\/]* ) ;;
+- *) { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
+- { (exit 1); exit 1; }; };;
++ [\\/$]* | ?:[\\/]* ) continue;;
++ NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
+ esac
++ { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
++ { (exit 1); exit 1; }; }
+ done
+
+ # There might be people who depend on the old broken behavior: `$host'
+@@ -714,86 +1458,158 @@
+ test "$silent" = yes && exec 6>/dev/null
+
+
++ac_pwd=`pwd` && test -n "$ac_pwd" &&
++ac_ls_di=`ls -di .` &&
++ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
++ { echo "$as_me: error: Working directory cannot be determined" >&2
++ { (exit 1); exit 1; }; }
++test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
++ { echo "$as_me: error: pwd does not report name of working directory" >&2
++ { (exit 1); exit 1; }; }
++
++
+ # Find the source files, if location was not specified.
+ if test -z "$srcdir"; then
+ ac_srcdir_defaulted=yes
+- # Try the directory containing this script, then its parent.
+- ac_confdir=`(dirname "$0") 2>/dev/null ||
++ # Try the directory containing this script, then the parent directory.
++ ac_confdir=`$as_dirname -- "$0" ||
+ $as_expr X"$0" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$0" : 'X\(//\)[^/]' \| \
+ X"$0" : 'X\(//\)$' \| \
+- X"$0" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
++ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+ echo X"$0" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
+ s/.*/./; q'`
+ srcdir=$ac_confdir
+- if test ! -r $srcdir/$ac_unique_file; then
++ if test ! -r "$srcdir/$ac_unique_file"; then
+ srcdir=..
+ fi
+ else
+ ac_srcdir_defaulted=no
+ fi
+-if test ! -r $srcdir/$ac_unique_file; then
+- if test "$ac_srcdir_defaulted" = yes; then
+- { echo "$as_me: error: cannot find sources ($ac_unique_file) in $ac_confdir or .." >&2
+- { (exit 1); exit 1; }; }
+- else
++if test ! -r "$srcdir/$ac_unique_file"; then
++ test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
+ { echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
+ { (exit 1); exit 1; }; }
+ fi
++ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
++ac_abs_confdir=`(
++ cd "$srcdir" && test -r "./$ac_unique_file" || { echo "$as_me: error: $ac_msg" >&2
++ { (exit 1); exit 1; }; }
++ pwd)`
++# When building in place, set srcdir=.
++if test "$ac_abs_confdir" = "$ac_pwd"; then
++ srcdir=.
++fi
++# Remove unnecessary trailing slashes from srcdir.
++# Double slashes in file names in object file debugging info
++# mess up M-x gdb in Emacs.
++case $srcdir in
++*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
++esac
++
++
++#### Check the passed arguments against the list of available ones
++x_with_list="\
++debug max-debug symbols optimization profiling tcheck dll static static-exe \
++plugin-auto-load bundles bin-release mt 64 universal exe runpath hard-runpath \
++lfs limited-linker openmp \
++autodep suffix hostspec version execopy bincopy lib-rebuilds lib-rebuilds=ask \
++deactivation makefile-auto-update projects flat-makefile configure-dialog \
++check ncbi-public strip pch caution ccache distcc \
++ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
++geo included-geo \
++z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
++ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
++bdb python perl jni sqlite3 icu boost boost-tag \
++sp expat sablot libxml libxslt libexslt xerces xalan zorba \
++oechem sge muparser hdf5 \
++gif jpeg tiff png xpm magic curl mimetic gsoap mongodb 3psw \
++local-lbsm ncbi-crypt connext \
++serial objects dbapi app ctools gui algo internal gbench"
++
++x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
++
++
++for x_arg in "$@" ; do
++ if test -z "$x_arg" ; then
++ continue
++ fi
++
++ x_okay=
++ for x_desc in $x_with_list ; do
++ if test "$x_arg" = "$x_desc" ; then
++ x_okay="okay"
++ break
++ fi
++ done
++ if test "$x_okay" = "okay" ; then
++ continue
+ fi
+-(cd $srcdir && test -r ./$ac_unique_file) 2>/dev/null ||
+- { echo "$as_me: error: sources are in $srcdir, but \`cd $srcdir' does not work" >&2
++
++ case "$x_arg" in
++ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
++ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
++ | --with-relative-runpath= | --x-includes= | --x-libraries= )
++ { echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2
++ { (exit 1); exit 1; }; }
++ ;;
++
++ --with-extra-action=* | --with-build-root=* | --with-build-root-sfx=* \
++ | --with-fake-root=* | --with-saved-settings=* \
++ | --with-projects=* | --with-check=* | --with-check-tools=* \
++ | --with-universal=* | --with-tcheck=* \
++ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
++ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
++ | [A-Z]*=* \
++ | --with-z=* | --with-bz2=* | --with-lzo=* \
++ | --with-pcre=* | --with-ncbi-c=* | --with-sss=* \
++ | --with-gcrypt=* | --with-gnutls=* | --with-openssl=* \
++ | --with-krb5=* | --with-curl=* | --with-gsoap=* | --with-mongodb=* \
++ | --with-sybase-local=* | --with-wxwidgets=* | --with-mimetic=* \
++ | --with-ftds=* | --with-mysql=* | --with-fastcgi=* \
++ | --with-sqlite3=* | --with-expat=* | --with-sablot=* \
++ | --with-icu=* | --with-xerces=* | --with-xalan=* | --with-zorba=* \
++ | --with-libxml=* | --with-libxslt=* | --with-exslt=* \
++ | --with-bdb=* | --with-odbc=* | --with-python=* | --with-perl=* \
++ | --with-freetype=* | --with-ftgl=* | --with-gif=* | --with-jpeg=* \
++ | --with-png=* | --with-tiff=* | --with-xpm=* | --with-opengl=* \
++ | --with-mesa=* | --with-glut=* | --with-glew=* | --with-oechem=* \
++ | --with-boost=* | --with-boost-tag=* | --with-orbacus=* | --with-sge=* \
++ | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
++ | --x-includes=* | --x-libraries=* | --with-3psw=* \
++ | --target=* | --with-runpath=* | --with-relative-runpath=* \
++ | --help | --no-create | --no-recursion)
++ ;;
++
++ * )
++ { echo "$as_me: error: $x_arg: unknown option; use --help to show usage" >&2
+ { (exit 1); exit 1; }; }
+-srcdir=`echo "$srcdir" | sed 's%\([^\\/]\)[\\/]*$%\1%'`
+-ac_env_build_alias_set=${build_alias+set}
+-ac_env_build_alias_value=$build_alias
+-ac_cv_env_build_alias_set=${build_alias+set}
+-ac_cv_env_build_alias_value=$build_alias
+-ac_env_host_alias_set=${host_alias+set}
+-ac_env_host_alias_value=$host_alias
+-ac_cv_env_host_alias_set=${host_alias+set}
+-ac_cv_env_host_alias_value=$host_alias
+-ac_env_target_alias_set=${target_alias+set}
+-ac_env_target_alias_value=$target_alias
+-ac_cv_env_target_alias_set=${target_alias+set}
+-ac_cv_env_target_alias_value=$target_alias
+-ac_env_CC_set=${CC+set}
+-ac_env_CC_value=$CC
+-ac_cv_env_CC_set=${CC+set}
+-ac_cv_env_CC_value=$CC
+-ac_env_CFLAGS_set=${CFLAGS+set}
+-ac_env_CFLAGS_value=$CFLAGS
+-ac_cv_env_CFLAGS_set=${CFLAGS+set}
+-ac_cv_env_CFLAGS_value=$CFLAGS
+-ac_env_LDFLAGS_set=${LDFLAGS+set}
+-ac_env_LDFLAGS_value=$LDFLAGS
+-ac_cv_env_LDFLAGS_set=${LDFLAGS+set}
+-ac_cv_env_LDFLAGS_value=$LDFLAGS
+-ac_env_CPPFLAGS_set=${CPPFLAGS+set}
+-ac_env_CPPFLAGS_value=$CPPFLAGS
+-ac_cv_env_CPPFLAGS_set=${CPPFLAGS+set}
+-ac_cv_env_CPPFLAGS_value=$CPPFLAGS
+-ac_env_CXX_set=${CXX+set}
+-ac_env_CXX_value=$CXX
+-ac_cv_env_CXX_set=${CXX+set}
+-ac_cv_env_CXX_value=$CXX
+-ac_env_CXXFLAGS_set=${CXXFLAGS+set}
+-ac_env_CXXFLAGS_value=$CXXFLAGS
+-ac_cv_env_CXXFLAGS_set=${CXXFLAGS+set}
+-ac_cv_env_CXXFLAGS_value=$CXXFLAGS
+-ac_env_CXXCPP_set=${CXXCPP+set}
+-ac_env_CXXCPP_value=$CXXCPP
+-ac_cv_env_CXXCPP_set=${CXXCPP+set}
+-ac_cv_env_CXXCPP_value=$CXXCPP
+-ac_env_CPP_set=${CPP+set}
+-ac_env_CPP_value=$CPP
+-ac_cv_env_CPP_set=${CPP+set}
+-ac_cv_env_CPP_value=$CPP
++ ;;
++ esac
++done
++
++for ac_var in $ac_precious_vars; do
++ eval ac_env_${ac_var}_set=\${${ac_var}+set}
++ eval ac_env_${ac_var}_value=\$${ac_var}
++ eval ac_cv_env_${ac_var}_set=\${${ac_var}+set}
++ eval ac_cv_env_${ac_var}_value=\$${ac_var}
++done
+
+ #
+ # Report the --help message.
+@@ -822,9 +1638,6 @@
+ -n, --no-create do not create output files
+ --srcdir=DIR find the sources in DIR [configure dir or \`..']
+
+-_ACEOF
+-
+- cat <<_ACEOF
+ Installation directories:
+ --prefix=PREFIX install architecture-independent files in PREFIX
+ [$ac_default_prefix]
+@@ -842,15 +1655,22 @@
+ --bindir=DIR user executables [EPREFIX/bin]
+ --sbindir=DIR system admin executables [EPREFIX/sbin]
+ --libexecdir=DIR program executables [EPREFIX/libexec]
+- --datadir=DIR read-only architecture-independent data [PREFIX/share]
+ --sysconfdir=DIR read-only single-machine data [PREFIX/etc]
+ --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]
+ --localstatedir=DIR modifiable single-machine data [PREFIX/var]
+ --libdir=DIR object code libraries [EPREFIX/lib]
+ --includedir=DIR C header files [PREFIX/include]
+ --oldincludedir=DIR C header files for non-gcc [/usr/include]
+- --infodir=DIR info documentation [PREFIX/info]
+- --mandir=DIR man documentation [PREFIX/man]
++ --datarootdir=DIR read-only arch.-independent data root [PREFIX/share]
++ --datadir=DIR read-only architecture-independent data [DATAROOTDIR]
++ --infodir=DIR info documentation [DATAROOTDIR/info]
++ --localedir=DIR locale-dependent data [DATAROOTDIR/locale]
++ --mandir=DIR man documentation [DATAROOTDIR/man]
++ --docdir=DIR documentation root [DATAROOTDIR/doc/ncbi-tools--]
++ --htmldir=DIR html documentation [DOCDIR]
++ --dvidir=DIR dvi documentation [DOCDIR]
++ --pdfdir=DIR pdf documentation [DOCDIR]
++ --psdir=DIR ps documentation [DOCDIR]
+ _ACEOF
+
+ cat <<\_ACEOF
+@@ -889,6 +1709,7 @@
+ --with-bundles build bundles in addition to dylibs on Mac OS X
+ --with-bin-release build executables suitable for public release
+ --with-mt compile in a MultiThread-safe manner
++ --with-openmp enable OpenMP extensions for all projects
+ --with-64 compile to 64-bit code
+ --with-universal build universal binaries on Mac OS X
+ --with-universal=CPUs build universal binaries targeting the given CPUs
+@@ -925,7 +1746,9 @@
+ --without-caution proceed without asking when in doubt
+ --without-ccache do not automatically use ccache if available
+ --without-distcc do not automatically use distcc if available
++ --with-ncbi-c=DIR use NCBI C Toolkit installation in DIR
+ --without-ncbi-c do not use NCBI C Toolkit
++ --with-sss=DIR use NCBI SSS installation in DIR
+ --without-sss do not use NCBI SSS libraries
+ --without-utils do not use NCBI SSS UTIL library
+ --without-sssdb do not use NCBI SSS DB library
+@@ -1034,6 +1857,10 @@
+ --without-curl do not use libcurl
+ --with-mimetic=DIR use libmimetic installation in DIR
+ --without-mimetic do not use libmimetic
++ --with-gsoap=DIR use gSOAP++ installation in DIR
++ --without-gsoap do not use gSOAP++
++ --with-mongodb=DIR use MongoDB installation in DIR
++ --without-mongodb do not use MongoDB
+ --with-3psw=std:netopt favor standard (system) builds of the above pkgs.
+ --without-3psw do not use any of the above packages
+ --without-local-lbsm turn off support for IPC with locally running LBSMD
+@@ -1058,87 +1885,90 @@
+ CFLAGS C compiler flags
+ LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a
+ nonstandard directory <lib dir>
+- CPPFLAGS C/C++ preprocessor flags, e.g. -I<include dir> if you have
+- headers in a nonstandard directory <include dir>
++ CPPFLAGS C/C++/Objective C preprocessor flags, e.g. -I<include dir> if
++ you have headers in a nonstandard directory <include dir>
+ CXX C++ compiler command
+ CXXFLAGS C++ compiler flags
+ CXXCPP C++ preprocessor
+ CPP C preprocessor
++ XMKMF Path to xmkmf, Makefile generator for X Window System
+
+ Use these variables to override the choices made by `configure' or to help
+ it to find libraries and programs with nonstandard names/locations.
+
+ Report bugs to <cpp-core@ncbi.nlm.nih.gov>.
+ _ACEOF
++ac_status=$?
+ fi
+
+ if test "$ac_init_help" = "recursive"; then
+ # If there are subdirs, report their specific --help.
+- ac_popdir=`pwd`
+ for ac_dir in : $ac_subdirs_all; do test "x$ac_dir" = x: && continue
+- test -d $ac_dir || continue
+- #ac_builddir=. # Useless!
+-ac_builddir=$builddir
+-if test -n "$ac_file_in"; then
+- ac_dir_in=`(dirname "$ac_file_in") 2>/dev/null ||
+-$as_expr X"$ac_file_in" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+- X"$ac_file_in" : 'X\(//\)[^/]' \| \
+- X"$ac_file_in" : 'X\(//\)$' \| \
+- X"$ac_file_in" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X"$ac_file_in" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
++ test -d "$ac_dir" || continue
++ # Base source directories on path to *input* file.
++if test -n "$ac_f"; then
++ ac_dir_in=`$as_dirname -- "$ac_f" ||
++$as_expr X"$ac_f" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
++ X"$ac_f" : 'X\(//\)[^/]' \| \
++ X"$ac_f" : 'X\(//\)$' \| \
++ X"$ac_f" : 'X\(/\)' \| . 2>/dev/null ||
++echo X"$ac_f" |
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
+ s/.*/./; q'`
+ else
+ ac_dir_in="$ac_dir"
+ fi
+
+-if test $ac_dir_in != .; then
+- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[\\/],,'`
+- # A "../" for each directory in $ac_dir_suffix.
+- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
+-else
+- ac_dir_suffix= ac_top_builddir=
+-fi
++ac_builddir=.
+
+-case $srcdir in
+- .) # No --srcdir option. We are building in place.
+- ac_srcdir=.
+- if test -z "$ac_top_builddir"; then
+- ac_top_srcdir=.
+- else
+- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
+- fi ;;
+- [\\/]* | ?:[\\/]* ) # Absolute path.
+- ac_srcdir=$srcdir/$ac_dir_suffix;
+- ac_top_srcdir=$srcdir ;;
+- *) # Relative path.
+- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
+- ac_top_srcdir=$ac_top_builddir$srcdir ;;
+-esac
+-# Do not use `cd foo && pwd` to compute absolute paths, because
+-# the directories may not exist.
+-case $builddir in
+-.) ac_abs_builddir="$ac_dir";;
+-*)
+- case "$ac_dir" in
+- .) ac_abs_builddir=$builddir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
+- *) ac_abs_builddir=$builddir/"$ac_dir";;
+- esac;;
+-esac
+-case $ac_abs_builddir in
+-.) ac_abs_top_builddir=${ac_top_builddir}.;;
++case "$ac_dir_in" in
++.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
+ *)
+- case ${ac_top_builddir}. in
+- .) ac_abs_top_builddir=$ac_abs_builddir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
+- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
++ ac_dir_suffix=/`echo "$ac_dir_in" | sed 's,^\.[\\/],,'`
++ # A ".." for each directory in $ac_dir_suffix.
++ ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
++ case $ac_top_builddir_sub in
++ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
++ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
+ esac;;
+ esac
++ac_abs_top_builddir=$ac_pwd
++ac_abs_builddir=$ac_pwd$ac_dir_suffix
++# for backward compatibility:
++ac_top_builddir=$ac_top_build_prefix
++
++case $srcdir in
++ .) # We are building in place.
++ ac_srcdir=.
++ ac_top_srcdir=$ac_top_builddir_sub
++ ac_abs_top_srcdir=$ac_pwd ;;
++ [\\/]* | ?:[\\/]* ) # Absolute name.
++ ac_srcdir=$srcdir$ac_dir_suffix;
++ ac_top_srcdir=$srcdir
++ ac_abs_top_srcdir=$srcdir ;;
++ *) # Relative name.
++ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
++ ac_top_srcdir=$ac_top_build_prefix$srcdir
++ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
++esac
++ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
++
++
+ case $ac_dir_in in
+ .) ac_abs_top_srcdir=$real_srcdir;;
+ *)
+@@ -1148,46 +1978,35 @@
+ *) ac_abs_top_srcdir=$ac_dir_in/$real_srcdir;;
+ esac;;
+ esac
+-case $ac_abs_top_srcdir in
+-.) ac_abs_srcdir=$ac_dir_suffix;;
+-*)
+- case $ac_dir_suffix in
+- .) ac_abs_srcdir=$ac_abs_top_srcdir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_dir_suffix;;
+- *) ac_abs_srcdir=$ac_abs_top_srcdir/$ac_dir_suffix;;
+- esac;;
+-esac
++ac_builddir=$builddir
+
+- cd $ac_dir
+- # Check for guested configure; otherwise get Cygnus style configure.
+- if test -f $ac_srcdir/configure.gnu; then
+- echo
+- $SHELL $ac_srcdir/configure.gnu --help=recursive
+- elif test -f $ac_srcdir/configure; then
+- echo
+- $SHELL $ac_srcdir/configure --help=recursive
+- elif test -f $ac_srcdir/configure.ac ||
+- test -f $ac_srcdir/configure.in; then
+- echo
+- $ac_configure --help
++ cd "$ac_dir" || { ac_status=$?; continue; }
++ # Check for guested configure.
++ if test -f "$ac_srcdir/configure.gnu"; then
++ echo &&
++ $SHELL "$ac_srcdir/configure.gnu" --help=recursive
++ elif test -f "$ac_srcdir/configure"; then
++ echo &&
++ $SHELL "$ac_srcdir/configure" --help=recursive
+ else
+ echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
+- fi
+- cd $ac_popdir
++ fi || ac_status=$?
++ cd "$ac_pwd" || { ac_status=$?; break; }
+ done
+ fi
+
+-test -n "$ac_init_help" && exit 0
++test -n "$ac_init_help" && exit $ac_status
+ if $ac_init_version; then
+ cat <<\_ACEOF
+ ncbi-tools++ configure 0.0
+-generated by GNU Autoconf 2.59
++generated by GNU Autoconf 2.60
+
+-Copyright (C) 2003 Free Software Foundation, Inc.
++Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
++2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
+ This configure script is free software; the Free Software Foundation
+ gives unlimited permission to copy, distribute and modify it.
+ _ACEOF
+- exit 0
++ exit
+ fi
+
+
+@@ -1522,6 +2341,18 @@
+ else
+ with_curl=no
+ fi
++ if test "${with_gsoap-no}" != "no"; then
++ { echo "$as_me: error: incompatible options: --with-gsoap but --without-3psw" >&2
++ { (exit 1); exit 1; }; }
++ else
++ with_gsoap=no
++ fi
++ if test "${with_mongodb-no}" != "no"; then
++ { echo "$as_me: error: incompatible options: --with-mongodb but --without-3psw" >&2
++ { (exit 1); exit 1; }; }
++ else
++ with_mongodb=no
++ fi
+
+ $as_unset NCBI || test "${NCBI+set}" != set || { NCBI=; export NCBI; }
+ ;;
+@@ -1542,17 +2373,17 @@
+ if test -z "$CONFIG_SITE" -a -r $srcdir/src/build-system/config.site; then
+ CONFIG_SITE=$srcdir/src/build-system/config.site
+ fi
+-exec 5>config.log
+-cat >&5 <<_ACEOF
++cat >config.log <<_ACEOF
+ This file contains any messages produced by compilers while
+ running configure, to aid debugging if configure makes a mistake.
+
+ It was created by ncbi-tools++ $as_me 0.0, which was
+-generated by GNU Autoconf 2.59. Invocation command line was
++generated by GNU Autoconf 2.60. Invocation command line was
+
+ $ $0 $@
+
+ _ACEOF
++exec 5>>config.log
+ {
+ cat <<_ASUNAME
+ ## --------- ##
+@@ -1571,7 +2402,7 @@
+ /bin/arch = `(/bin/arch) 2>/dev/null || echo unknown`
+ /usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown`
+ /usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
+-hostinfo = `(hostinfo) 2>/dev/null || echo unknown`
++/usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown`
+ /bin/machine = `(/bin/machine) 2>/dev/null || echo unknown`
+ /usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown`
+ /bin/universe = `(/bin/universe) 2>/dev/null || echo unknown`
+@@ -1585,6 +2416,7 @@
+ test -z "$as_dir" && as_dir=.
+ echo "PATH: $as_dir"
+ done
++IFS=$as_save_IFS
+
+ } >&5
+
+@@ -1606,7 +2438,6 @@
+ ac_configure_args=
+ ac_configure_args0=
+ ac_configure_args1=
+-ac_sep=
+ ac_must_keep_next=false
+ for ac_pass in 1 2
+ do
+@@ -1617,7 +2448,7 @@
+ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
+ | -silent | --silent | --silen | --sile | --sil)
+ continue ;;
+- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
++ *\'*)
+ ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ esac
+ case $ac_pass in
+@@ -1639,9 +2470,7 @@
+ -* ) ac_must_keep_next=true ;;
+ esac
+ fi
+- ac_configure_args="$ac_configure_args$ac_sep'$ac_arg'"
+- # Get rid of the leading space.
+- ac_sep=" "
++ ac_configure_args="$ac_configure_args '$ac_arg'"
+ ;;
+ esac
+ done
+@@ -1652,8 +2481,8 @@
+ # When interrupted or exit'd, cleanup temporary files, and complete
+ # config.log. We remove comments because anyway the quotes in there
+ # would cause problems or look ugly.
+-# WARNING: Be sure not to use single quotes in there, as some shells,
+-# such as our DU 5.0 friend, will then `close' the trap.
++# WARNING: Use '\'' to represent an apostrophe within the trap.
++# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
+ trap 'exit_status=$?
+ # Save into config.log some information that might help in debugging.
+ {
+@@ -1666,20 +2495,34 @@
+ _ASBOX
+ echo
+ # The following way of writing the cache mishandles newlines in values,
+-{
++(
++ for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do
++ eval ac_val=\$$ac_var
++ case $ac_val in #(
++ *${as_nl}*)
++ case $ac_var in #(
++ *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
++echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
++ esac
++ case $ac_var in #(
++ _ | IFS | as_nl) ;; #(
++ *) $as_unset $ac_var ;;
++ esac ;;
++ esac
++ done
+ (set) 2>&1 |
+- case `(ac_space='"'"' '"'"'; set | grep ac_space) 2>&1` in
+- *ac_space=\ *)
+- sed -n \
+- "s/'"'"'/'"'"'\\\\'"'"''"'"'/g;
+- s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='"'"'\\2'"'"'/p"
+- ;;
+- *)
++ case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
++ *${as_nl}ac_space=\ *)
+ sed -n \
+- "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
+- ;;
+- esac;
+-}
++ "s/'\''/'\''\\\\'\'''\''/g;
++ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
++ ;; #(
++ *)
++ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
++ ;;
++ esac |
++ sort
++)
+ echo
+
+ cat <<\_ASBOX
+@@ -1690,22 +2533,28 @@
+ echo
+ for ac_var in $ac_subst_vars
+ do
+- eval ac_val=$`echo $ac_var`
+- echo "$ac_var='"'"'$ac_val'"'"'"
++ eval ac_val=\$$ac_var
++ case $ac_val in
++ *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
++ esac
++ echo "$ac_var='\''$ac_val'\''"
+ done | sort
+ echo
+
+ if test -n "$ac_subst_files"; then
+ cat <<\_ASBOX
+-## ------------- ##
+-## Output files. ##
+-## ------------- ##
++## ------------------- ##
++## File substitutions. ##
++## ------------------- ##
+ _ASBOX
+ echo
+ for ac_var in $ac_subst_files
+ do
+- eval ac_val=$`echo $ac_var`
+- echo "$ac_var='"'"'$ac_val'"'"'"
++ eval ac_val=\$$ac_var
++ case $ac_val in
++ *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
++ esac
++ echo "$ac_var='\''$ac_val'\''"
+ done | sort
+ echo
+ fi
+@@ -1717,15 +2566,15 @@
+ ## ----------- ##
+ _ASBOX
+ echo
+- sed "/^$/d" confdefs.h | sort
++ cat confdefs.h
+ echo
+ fi
+ test "$ac_signal" != 0 &&
+ echo "$as_me: caught signal $ac_signal"
+ echo "$as_me: exit $exit_status"
+ } >&5
+- rm -f core *.core &&
+- rm -rf conftest* confdefs* conf$$* $ac_clean_files &&
++ rm -f core *.core core.conftest.* &&
++ rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
+ exit $exit_status
+ ' 0
+ for ac_signal in 1 2 13 15; do
+@@ -1734,9 +2583,7 @@
+ ac_signal=0
+
+ # confdefs.h avoids OS command line length limits that DEFS can exceed.
+-rm -rf conftest* confdefs.h
+-# AIX cpp loses on an empty file, so make sure it contains at least a newline.
+-echo >confdefs.h
++rm -f -r conftest* confdefs.h
+
+ # Predefined preprocessor variables.
+
+@@ -1747,14 +2594,17 @@
+
+ # Let the site file select an alternate cache file if it wants to.
+ # Prefer explicitly selected file to automatically selected ones.
+-if test -z "$CONFIG_SITE"; then
+- if test "x$prefix" != xNONE; then
+- CONFIG_SITE="$prefix/share/config.site $prefix/etc/config.site"
++if test -n "$CONFIG_SITE"; then
++ set x "$CONFIG_SITE"
++elif test "x$prefix" != xNONE; then
++ set x "$prefix/share/config.site" "$prefix/etc/config.site"
+ else
+- CONFIG_SITE="$ac_default_prefix/share/config.site $ac_default_prefix/etc/config.site"
+- fi
++ set x "$ac_default_prefix/share/config.site" \
++ "$ac_default_prefix/etc/config.site"
+ fi
+-for ac_site_file in $CONFIG_SITE; do
++shift
++for ac_site_file
++do
+ if test -r "$ac_site_file"; then
+ { echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
+ echo "$as_me: loading site script $ac_site_file" >&6;}
+@@ -1770,8 +2620,8 @@
+ { echo "$as_me:$LINENO: loading cache $cache_file" >&5
+ echo "$as_me: loading cache $cache_file" >&6;}
+ case $cache_file in
+- [\\/]* | ?:[\\/]* ) . $cache_file;;
+- *) . ./$cache_file;;
++ [\\/]* | ?:[\\/]* ) . "$cache_file";;
++ *) . "./$cache_file";;
+ esac
+ fi
+ else
+@@ -1783,12 +2633,11 @@
+ # Check that the precious variables saved in the cache have kept the same
+ # value.
+ ac_cache_corrupted=false
+-for ac_var in `(set) 2>&1 |
+- sed -n 's/^ac_env_\([a-zA-Z_0-9]*\)_set=.*/\1/p'`; do
++for ac_var in $ac_precious_vars; do
+ eval ac_old_set=\$ac_cv_env_${ac_var}_set
+ eval ac_new_set=\$ac_env_${ac_var}_set
+- eval ac_old_val="\$ac_cv_env_${ac_var}_value"
+- eval ac_new_val="\$ac_env_${ac_var}_value"
++ eval ac_old_val=\$ac_cv_env_${ac_var}_value
++ eval ac_new_val=\$ac_env_${ac_var}_value
+ case $ac_old_set,$ac_new_set in
+ set,)
+ { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
+@@ -1813,8 +2662,7 @@
+ # Pass precious variables to config.status.
+ if test "$ac_new_set" = set; then
+ case $ac_new_val in
+- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
+- ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
++ *\'*) ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
+ *) ac_arg=$ac_var=$ac_new_val ;;
+ esac
+ case " $ac_configure_args " in
+@@ -1831,12 +2679,6 @@
+ { (exit 1); exit 1; }; }
+ fi
+
+-ac_ext=c
+-ac_cpp='$CPP $CPPFLAGS'
+-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+-ac_compiler_gnu=$ac_cv_c_compiler_gnu
+-
+
+
+
+@@ -1861,6 +2703,11 @@
+
+
+
++ac_ext=c
++ac_cpp='$CPP $CPPFLAGS'
++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+
+@@ -1874,1167 +2721,1129 @@
+
+ ## Title
+
+-# Check whether --with-title0 or --without-title0 was given.
++# Check whether --with-title0 was given.
+ if test "${with_title0+set}" = set; then
+- withval="$with_title0"
++ withval=$with_title0;
++fi
+
+-fi;
+
+-# Check whether --with-title1 or --without-title1 was given.
++# Check whether --with-title1 was given.
+ if test "${with_title1+set}" = set; then
+- withval="$with_title1"
++ withval=$with_title1;
++fi
+
+-fi;
+
+-# Check whether --with-title2 or --without-title2 was given.
++# Check whether --with-title2 was given.
+ if test "${with_title2+set}" = set; then
+- withval="$with_title2"
++ withval=$with_title2;
++fi
+
+-fi;
+
+ ## Code generation
+
+-# Check whether --with-debug or --without-debug was given.
++# Check whether --with-debug was given.
+ if test "${with_debug+set}" = set; then
+- withval="$with_debug"
++ withval=$with_debug;
++fi
+
+-fi;
+
+-# Check whether --with-max-debug or --without-max-debug was given.
++# Check whether --with-max-debug was given.
+ if test "${with_max_debug+set}" = set; then
+- withval="$with_max_debug"
++ withval=$with_max_debug;
++fi
+
+-fi;
+
+-# Check whether --with-symbols or --without-symbols was given.
++# Check whether --with-symbols was given.
+ if test "${with_symbols+set}" = set; then
+- withval="$with_symbols"
++ withval=$with_symbols;
++fi
+
+-fi;
+
+-# Check whether --with-optimization or --without-optimization was given.
++# Check whether --with-optimization was given.
+ if test "${with_optimization+set}" = set; then
+- withval="$with_optimization"
++ withval=$with_optimization;
++fi
+
+-fi;
+
+-# Check whether --with-profiling or --without-profiling was given.
++# Check whether --with-profiling was given.
+ if test "${with_profiling+set}" = set; then
+- withval="$with_profiling"
++ withval=$with_profiling;
++fi
+
+-fi;
+
+-# Check whether --with-tcheck or --without-tcheck was given.
++# Check whether --with-tcheck was given.
+ if test "${with_tcheck+set}" = set; then
+- withval="$with_tcheck"
++ withval=$with_tcheck;
++fi
+
+-fi;
+
+-# Check whether --with-dll or --without-dll was given.
++# Check whether --with-dll was given.
+ if test "${with_dll+set}" = set; then
+- withval="$with_dll"
++ withval=$with_dll;
++fi
+
+-fi;
+
+-# Check whether --with-static or --without-static was given.
++# Check whether --with-static was given.
+ if test "${with_static+set}" = set; then
+- withval="$with_static"
++ withval=$with_static;
++fi
+
+-fi;
+
+-# Check whether --with-static-exe or --without-static-exe was given.
++# Check whether --with-static-exe was given.
+ if test "${with_static_exe+set}" = set; then
+- withval="$with_static_exe"
++ withval=$with_static_exe;
++fi
+
+-fi;
+
+-# Check whether --with-plugin-auto-load or --without-plugin-auto-load was given.
++# Check whether --with-plugin-auto-load was given.
+ if test "${with_plugin_auto_load+set}" = set; then
+- withval="$with_plugin_auto_load"
++ withval=$with_plugin_auto_load;
++fi
+
+-fi;
+
+-# Check whether --with-bundles or --without-bundles was given.
++# Check whether --with-bundles was given.
+ if test "${with_bundles+set}" = set; then
+- withval="$with_bundles"
++ withval=$with_bundles;
++fi
+
+-fi;
+
+-# Check whether --with-bin-release or --without-bin-release was given.
++# Check whether --with-bin-release was given.
+ if test "${with_bin_release+set}" = set; then
+- withval="$with_bin_release"
++ withval=$with_bin_release;
++fi
+
+-fi;
+
+-# Check whether --with-mt or --without-mt was given.
++# Check whether --with-mt was given.
+ if test "${with_mt+set}" = set; then
+- withval="$with_mt"
++ withval=$with_mt;
++fi
++
++
++# Check whether --with-openmp was given.
++if test "${with_openmp+set}" = set; then
++ withval=$with_openmp;
++fi
+
+-fi;
+
+-# Check whether --with-64 or --without-64 was given.
++# Check whether --with-64 was given.
+ if test "${with_64+set}" = set; then
+- withval="$with_64"
++ withval=$with_64;
++fi
+
+-fi;
+
+-# Check whether --with-universal or --without-universal was given.
++# Check whether --with-universal was given.
+ if test "${with_universal+set}" = set; then
+- withval="$with_universal"
++ withval=$with_universal;
++fi
+
+-fi;
+
+-# Check whether --with-universal2 or --without-universal2 was given.
++# Check whether --with-universal2 was given.
+ if test "${with_universal2+set}" = set; then
+- withval="$with_universal2"
++ withval=$with_universal2;
++fi
+
+-fi;
+
+-# Check whether --with-exe or --without-exe was given.
++# Check whether --with-exe was given.
+ if test "${with_exe+set}" = set; then
+- withval="$with_exe"
++ withval=$with_exe;
++fi
+
+-fi;
+
+-# Check whether --with-runpath or --without-runpath was given.
++# Check whether --with-runpath was given.
+ if test "${with_runpath+set}" = set; then
+- withval="$with_runpath"
++ withval=$with_runpath;
++fi
+
+-fi;
+
+-# Check whether --with-relative-runpath or --without-relative-runpath was given.
++# Check whether --with-relative-runpath was given.
+ if test "${with_relative_runpath+set}" = set; then
+- withval="$with_relative_runpath"
++ withval=$with_relative_runpath;
++fi
+
+-fi;
+
+-# Check whether --with-hard-runpath or --without-hard-runpath was given.
++# Check whether --with-hard-runpath was given.
+ if test "${with_hard_runpath+set}" = set; then
+- withval="$with_hard_runpath"
++ withval=$with_hard_runpath;
++fi
+
+-fi;
+
+-# Check whether --with-lfs or --without-lfs was given.
++# Check whether --with-lfs was given.
+ if test "${with_lfs+set}" = set; then
+- withval="$with_lfs"
++ withval=$with_lfs;
++fi
+
+-fi;
+
+-# Check whether --with-limited-linker or --without-limited-linker was given.
++# Check whether --with-limited-linker was given.
+ if test "${with_limited_linker+set}" = set; then
+- withval="$with_limited_linker"
++ withval=$with_limited_linker;
++fi
+
+-fi;
+
+ ## Scripts, make features, and directory naming
+
+-# Check whether --with-extra-action or --without-extra-action was given.
++# Check whether --with-extra-action was given.
+ if test "${with_extra_action+set}" = set; then
+- withval="$with_extra_action"
++ withval=$with_extra_action;
++fi
+
+-fi;
+
+-# Check whether --with-autodep or --without-autodep was given.
++# Check whether --with-autodep was given.
+ if test "${with_autodep+set}" = set; then
+- withval="$with_autodep"
++ withval=$with_autodep;
++fi
+
+-fi;
+
+-# Check whether --with-build-root or --without-build-root was given.
++# Check whether --with-build-root was given.
+ if test "${with_build_root+set}" = set; then
+- withval="$with_build_root"
++ withval=$with_build_root;
++fi
+
+-fi;
+
+-# Check whether --with-fake-root or --without-fake-root was given.
++# Check whether --with-fake-root was given.
+ if test "${with_fake_root+set}" = set; then
+- withval="$with_fake_root"
++ withval=$with_fake_root;
++fi
+
+-fi;
+
+-# Check whether --with-suffix or --without-suffix was given.
++# Check whether --with-suffix was given.
+ if test "${with_suffix+set}" = set; then
+- withval="$with_suffix"
++ withval=$with_suffix;
++fi
+
+-fi;
+
+-# Check whether --with-hostspec or --without-hostspec was given.
++# Check whether --with-hostspec was given.
+ if test "${with_hostspec+set}" = set; then
+- withval="$with_hostspec"
++ withval=$with_hostspec;
++fi
+
+-fi;
+
+-# Check whether --with-version or --without-version was given.
++# Check whether --with-version was given.
+ if test "${with_version+set}" = set; then
+- withval="$with_version"
++ withval=$with_version;
++fi
+
+-fi;
+
+-# Check whether --with-build-root-sfx or --without-build-root-sfx was given.
++# Check whether --with-build-root-sfx was given.
+ if test "${with_build_root_sfx+set}" = set; then
+- withval="$with_build_root_sfx"
++ withval=$with_build_root_sfx;
++fi
+
+-fi;
+
+-# Check whether --with-execopy or --without-execopy was given.
++# Check whether --with-execopy was given.
+ if test "${with_execopy+set}" = set; then
+- withval="$with_execopy"
++ withval=$with_execopy;
++fi
+
+-fi;
+
+-# Check whether --with-bincopy or --without-bincopy was given.
++# Check whether --with-bincopy was given.
+ if test "${with_bincopy+set}" = set; then
+- withval="$with_bincopy"
++ withval=$with_bincopy;
++fi
+
+-fi;
+
+-# Check whether --with-lib-rebuilds or --without-lib-rebuilds was given.
++# Check whether --with-lib-rebuilds was given.
+ if test "${with_lib_rebuilds+set}" = set; then
+- withval="$with_lib_rebuilds"
++ withval=$with_lib_rebuilds;
++fi
+
+-fi;
+
+-# Check whether --with-lib-rebuilds2 or --without-lib-rebuilds2 was given.
++# Check whether --with-lib-rebuilds2 was given.
+ if test "${with_lib_rebuilds2+set}" = set; then
+- withval="$with_lib_rebuilds2"
++ withval=$with_lib_rebuilds2;
++fi
+
+-fi;
+-# Check whether --with-deactivation or --without-deactivation was given.
++# Check whether --with-deactivation was given.
+ if test "${with_deactivation+set}" = set; then
+- withval="$with_deactivation"
++ withval=$with_deactivation;
++fi
+
+-fi;
+
+-# Check whether --with-makefile-auto-update or --without-makefile-auto-update was given.
++# Check whether --with-makefile-auto-update was given.
+ if test "${with_makefile_auto_update+set}" = set; then
+- withval="$with_makefile_auto_update"
++ withval=$with_makefile_auto_update;
++fi
+
+-fi;
+
+-# Check whether --with-projects or --without-projects was given.
++# Check whether --with-projects was given.
+ if test "${with_projects+set}" = set; then
+- withval="$with_projects"
++ withval=$with_projects;
++fi
+
+-fi;
+
+-# Check whether --with-flat-makefile or --without-flat-makefile was given.
++# Check whether --with-flat-makefile was given.
+ if test "${with_flat_makefile+set}" = set; then
+- withval="$with_flat_makefile"
++ withval=$with_flat_makefile;
++fi
+
+-fi;
+
+-# Check whether --with-configure-dialog or --without-configure-dialog was given.
++# Check whether --with-configure-dialog was given.
+ if test "${with_configure_dialog+set}" = set; then
+- withval="$with_configure_dialog"
++ withval=$with_configure_dialog;
++fi
+
+-fi;
+
+-# Check whether --with-saved-settings or --without-saved-settings was given.
++# Check whether --with-saved-settings was given.
+ if test "${with_saved_settings+set}" = set; then
+- withval="$with_saved_settings"
++ withval=$with_saved_settings;
++fi
+
+-fi;
+
+-# Check whether --with-check or --without-check was given.
++# Check whether --with-check was given.
+ if test "${with_check+set}" = set; then
+- withval="$with_check"
++ withval=$with_check;
++fi
+
+-fi;
+
+-# Check whether --with-check-tools or --without-check-tools was given.
++# Check whether --with-check-tools was given.
+ if test "${with_check_tools+set}" = set; then
+- withval="$with_check_tools"
++ withval=$with_check_tools;
++fi
+
+-fi;
+
+-# Check whether --with-ncbi-public or --without-ncbi-public was given.
++# Check whether --with-ncbi-public was given.
+ if test "${with_ncbi_public+set}" = set; then
+- withval="$with_ncbi_public"
++ withval=$with_ncbi_public;
++fi
+
+-fi;
+
+-# Check whether --with-strip or --without-strip was given.
++# Check whether --with-strip was given.
+ if test "${with_strip+set}" = set; then
+- withval="$with_strip"
++ withval=$with_strip;
++fi
+
+-fi;
+
+-# Check whether --with-pch or --without-pch was given.
++# Check whether --with-pch was given.
+ if test "${with_pch+set}" = set; then
+- withval="$with_pch"
++ withval=$with_pch;
++fi
+
+-fi;
+
+-# Check whether --with-caution or --without-caution was given.
++# Check whether --with-caution was given.
+ if test "${with_caution+set}" = set; then
+- withval="$with_caution"
++ withval=$with_caution;
++fi
+
+-fi;
+
+-# Check whether --with-caution2 or --without-caution2 was given.
++# Check whether --with-caution2 was given.
+ if test "${with_caution2+set}" = set; then
+- withval="$with_caution2"
++ withval=$with_caution2;
++fi
+
+-fi;
+
+-# Check whether --with-ccache or --without-ccache was given.
++# Check whether --with-ccache was given.
+ if test "${with_ccache+set}" = set; then
+- withval="$with_ccache"
++ withval=$with_ccache;
++fi
+
+-fi;
+
+-# Check whether --with-distcc or --without-distcc was given.
++# Check whether --with-distcc was given.
+ if test "${with_distcc+set}" = set; then
+- withval="$with_distcc"
++ withval=$with_distcc;
++fi
+
+-fi;
+
+ ## NCBI packages
+
+-# Check whether --with-ncbi-c or --without-ncbi-c was given.
++# Check whether --with-ncbi-c was given.
+ if test "${with_ncbi_c+set}" = set; then
+- withval="$with_ncbi_c"
++ withval=$with_ncbi_c;
++fi
++
++
++# Check whether --with-ncbi-c2 was given.
++if test "${with_ncbi_c2+set}" = set; then
++ withval=$with_ncbi_c2;
++fi
+
+-fi;
+
+-# Check whether --with-sss or --without-sss was given.
++# Check whether --with-sss was given.
+ if test "${with_sss+set}" = set; then
+- withval="$with_sss"
++ withval=$with_sss;
++fi
++
++
++# Check whether --with-sss2 was given.
++if test "${with_sss2+set}" = set; then
++ withval=$with_sss2;
++fi
+
+-fi;
+
+-# Check whether --with-sssutils or --without-sssutils was given.
++# Check whether --with-sssutils was given.
+ if test "${with_sssutils+set}" = set; then
+- withval="$with_sssutils"
++ withval=$with_sssutils;
++fi
+
+-fi;
+
+-# Check whether --with-sssdb or --without-sssdb was given.
++# Check whether --with-sssdb was given.
+ if test "${with_sssdb+set}" = set; then
+- withval="$with_sssdb"
++ withval=$with_sssdb;
++fi
+
+-fi;
+
+-# Check whether --with-included-sss or --without-included-sss was given.
++# Check whether --with-included-sss was given.
+ if test "${with_included_sss+set}" = set; then
+- withval="$with_included_sss"
++ withval=$with_included_sss;
++fi
+
+-fi;
+
+ ## Third-party and system packages
+
+-# Check whether --with-z or --without-z was given.
++# Check whether --with-z was given.
+ if test "${with_z+set}" = set; then
+- withval="$with_z"
++ withval=$with_z;
++fi
+
+-fi;
+
+-# Check whether --with-z2 or --without-z2 was given.
++# Check whether --with-z2 was given.
+ if test "${with_z2+set}" = set; then
+- withval="$with_z2"
++ withval=$with_z2;
++fi
+
+-fi;
+
+-# Check whether --with-bz2 or --without-bz2 was given.
++# Check whether --with-bz2 was given.
+ if test "${with_bz2+set}" = set; then
+- withval="$with_bz2"
++ withval=$with_bz2;
++fi
+
+-fi;
+
+-# Check whether --with-bz2b or --without-bz2b was given.
++# Check whether --with-bz2b was given.
+ if test "${with_bz2b+set}" = set; then
+- withval="$with_bz2b"
++ withval=$with_bz2b;
++fi
+
+-fi;
+
+-# Check whether --with-lzo or --without-lzo was given.
++# Check whether --with-lzo was given.
+ if test "${with_lzo+set}" = set; then
+- withval="$with_lzo"
++ withval=$with_lzo;
++fi
+
+-fi;
+
+-# Check whether --with-lzo_ or --without-lzo_ was given.
++# Check whether --with-lzo_ was given.
+ if test "${with_lzo_+set}" = set; then
+- withval="$with_lzo_"
++ withval=$with_lzo_;
++fi
+
+-fi;
+
+-# Check whether --with-pcre or --without-pcre was given.
++# Check whether --with-pcre was given.
+ if test "${with_pcre+set}" = set; then
+- withval="$with_pcre"
++ withval=$with_pcre;
++fi
+
+-fi;
+
+-# Check whether --with-pcre2 or --without-pcre2 was given.
++# Check whether --with-pcre2 was given.
+ if test "${with_pcre2+set}" = set; then
+- withval="$with_pcre2"
++ withval=$with_pcre2;
++fi
+
+-fi;
+
+-# Check whether --with-gcrypt or --without-gcrypt was given.
++# Check whether --with-gcrypt was given.
+ if test "${with_gcrypt+set}" = set; then
+- withval="$with_gcrypt"
++ withval=$with_gcrypt;
++fi
+
+-fi;
+
+-# Check whether --with-gcrypt2 or --without-gcrypt2 was given.
++# Check whether --with-gcrypt2 was given.
+ if test "${with_gcrypt2+set}" = set; then
+- withval="$with_gcrypt2"
++ withval=$with_gcrypt2;
++fi
+
+-fi;
+
+-# Check whether --with-gnutls or --without-gnutls was given.
++# Check whether --with-gnutls was given.
+ if test "${with_gnutls+set}" = set; then
+- withval="$with_gnutls"
++ withval=$with_gnutls;
++fi
+
+-fi;
+
+-# Check whether --with-gnutls2 or --without-gnutls2 was given.
++# Check whether --with-gnutls2 was given.
+ if test "${with_gnutls2+set}" = set; then
+- withval="$with_gnutls2"
++ withval=$with_gnutls2;
++fi
+
+-fi;
+
+-# Check whether --with-openssl or --without-openssl was given.
++# Check whether --with-openssl was given.
+ if test "${with_openssl+set}" = set; then
+- withval="$with_openssl"
++ withval=$with_openssl;
++fi
+
+-fi;
+
+-# Check whether --with-openssl2 or --without-openssl2 was given.
++# Check whether --with-openssl2 was given.
+ if test "${with_openssl2+set}" = set; then
+- withval="$with_openssl2"
++ withval=$with_openssl2;
++fi
+
+-fi;
+
+-# Check whether --with-krb5 or --without-krb5 was given.
++# Check whether --with-krb5 was given.
+ if test "${with_krb5+set}" = set; then
+- withval="$with_krb5"
++ withval=$with_krb5;
++fi
+
+-fi;
+
+-# Check whether --with-krb5b or --without-krb5b was given.
++# Check whether --with-krb5b was given.
+ if test "${with_krb5b+set}" = set; then
+- withval="$with_krb5b"
++ withval=$with_krb5b;
++fi
+
+-fi;
+
+-# Check whether --with-sybase or --without-sybase was given.
++# Check whether --with-sybase was given.
+ if test "${with_sybase+set}" = set; then
+- withval="$with_sybase"
++ withval=$with_sybase;
++fi
+
+-fi;
+
+-# Check whether --with-sybase-local or --without-sybase-local was given.
++# Check whether --with-sybase-local was given.
+ if test "${with_sybase_local+set}" = set; then
+- withval="$with_sybase_local"
++ withval=$with_sybase_local;
++fi
+
+-fi;
+
+-# Check whether --with-sybase-new or --without-sybase-new was given.
++# Check whether --with-sybase-new was given.
+ if test "${with_sybase_new+set}" = set; then
+- withval="$with_sybase_new"
++ withval=$with_sybase_new;
++fi
+
+-fi;
+
+-# Check whether --with-ftds or --without-ftds was given.
++# Check whether --with-ftds was given.
+ if test "${with_ftds+set}" = set; then
+- withval="$with_ftds"
++ withval=$with_ftds;
++fi
+
+-fi;
+
+-# Check whether --with-ftds2 or --without-ftds2 was given.
++# Check whether --with-ftds2 was given.
+ if test "${with_ftds2+set}" = set; then
+- withval="$with_ftds2"
++ withval=$with_ftds2;
++fi
+
+-fi;
+
+-# Check whether --with-ftds-renamed or --without-ftds-renamed was given.
++# Check whether --with-ftds-renamed was given.
+ if test "${with_ftds_renamed+set}" = set; then
+- withval="$with_ftds_renamed"
++ withval=$with_ftds_renamed;
++fi
+
+-fi;
+
+-# Check whether --with-mysql or --without-mysql was given.
++# Check whether --with-mysql was given.
+ if test "${with_mysql+set}" = set; then
+- withval="$with_mysql"
++ withval=$with_mysql;
++fi
+
+-fi;
+
+-# Check whether --with-mysql2 or --without-mysql2 was given.
++# Check whether --with-mysql2 was given.
+ if test "${with_mysql2+set}" = set; then
+- withval="$with_mysql2"
++ withval=$with_mysql2;
++fi
+
+-fi;
+
+-# Check whether --with-opengl or --without-opengl was given.
++# Check whether --with-opengl was given.
+ if test "${with_opengl+set}" = set; then
+- withval="$with_opengl"
++ withval=$with_opengl;
++fi
+
+-fi;
+
+-# Check whether --with-opengl2 or --without-opengl2 was given.
++# Check whether --with-opengl2 was given.
+ if test "${with_opengl2+set}" = set; then
+- withval="$with_opengl2"
++ withval=$with_opengl2;
++fi
+
+-fi;
+
+-# Check whether --with-mesa or --without-mesa was given.
++# Check whether --with-mesa was given.
+ if test "${with_mesa+set}" = set; then
+- withval="$with_mesa"
++ withval=$with_mesa;
++fi
+
+-fi;
+
+-# Check whether --with-mesa2 or --without-mesa2 was given.
++# Check whether --with-mesa2 was given.
+ if test "${with_mesa2+set}" = set; then
+- withval="$with_mesa2"
++ withval=$with_mesa2;
++fi
+
+-fi;
+
+-# Check whether --with-glut or --without-glut was given.
++# Check whether --with-glut was given.
+ if test "${with_glut+set}" = set; then
+- withval="$with_glut"
++ withval=$with_glut;
++fi
+
+-fi;
+
+-# Check whether --with-glut2 or --without-glut2 was given.
++# Check whether --with-glut2 was given.
+ if test "${with_glut2+set}" = set; then
+- withval="$with_glut2"
++ withval=$with_glut2;
++fi
+
+-fi;
+
+-# Check whether --with-glew or --without-glew was given.
++# Check whether --with-glew was given.
+ if test "${with_glew+set}" = set; then
+- withval="$with_glew"
++ withval=$with_glew;
++fi
+
+-fi;
+
+-# Check whether --with-glew2 or --without-glew2 was given.
++# Check whether --with-glew2 was given.
+ if test "${with_glew2+set}" = set; then
+- withval="$with_glew2"
++ withval=$with_glew2;
++fi
+
+-fi;
+
+-# Check whether --with-glew-mx or --without-glew-mx was given.
++# Check whether --with-glew-mx was given.
+ if test "${with_glew_mx+set}" = set; then
+- withval="$with_glew_mx"
++ withval=$with_glew_mx;
++fi
+
+-fi;
+
+-# Check whether --with-wxwidgets or --without-wxwidgets was given.
++# Check whether --with-wxwidgets was given.
+ if test "${with_wxwidgets+set}" = set; then
+- withval="$with_wxwidgets"
++ withval=$with_wxwidgets;
++fi
+
+-fi;
+
+-# Check whether --with-wxwidgets2 or --without-wxwidgets2 was given.
++# Check whether --with-wxwidgets2 was given.
+ if test "${with_wxwidgets2+set}" = set; then
+- withval="$with_wxwidgets2"
++ withval=$with_wxwidgets2;
++fi
+
+-fi;
+
+-# Check whether --with-wxwidgets-ucs or --without-wxwidgets-ucs was given.
++# Check whether --with-wxwidgets-ucs was given.
+ if test "${with_wxwidgets_ucs+set}" = set; then
+- withval="$with_wxwidgets_ucs"
++ withval=$with_wxwidgets_ucs;
++fi
+
+-fi;
+
+-# Check whether --with-wxwidgets-ucs2 or --without-wxwidgets-ucs2 was given.
++# Check whether --with-wxwidgets-ucs2 was given.
+ if test "${with_wxwidgets_ucs2+set}" = set; then
+- withval="$with_wxwidgets_ucs2"
++ withval=$with_wxwidgets_ucs2;
++fi
+
+-fi;
+
+-# Check whether --with-freetype or --without-freetype was given.
++# Check whether --with-freetype was given.
+ if test "${with_freetype+set}" = set; then
+- withval="$with_freetype"
++ withval=$with_freetype;
++fi
+
+-fi;
+
+-# Check whether --with-freetype_ or --without-freetype_ was given.
++# Check whether --with-freetype_ was given.
+ if test "${with_freetype_+set}" = set; then
+- withval="$with_freetype_"
++ withval=$with_freetype_;
++fi
+
+-fi;
+
+-# Check whether --with-ftgl or --without-ftgl was given.
++# Check whether --with-ftgl was given.
+ if test "${with_ftgl+set}" = set; then
+- withval="$with_ftgl"
++ withval=$with_ftgl;
++fi
+
+-fi;
+
+-# Check whether --with-ftgl2 or --without-ftgl2 was given.
++# Check whether --with-ftgl2 was given.
+ if test "${with_ftgl2+set}" = set; then
+- withval="$with_ftgl2"
++ withval=$with_ftgl2;
++fi
+
+-fi;
+
+-# Check whether --with-fastcgi or --without-fastcgi was given.
++# Check whether --with-fastcgi was given.
+ if test "${with_fastcgi+set}" = set; then
+- withval="$with_fastcgi"
++ withval=$with_fastcgi;
++fi
+
+-fi;
+
+-# Check whether --with-fastcgi2 or --without-fastcgi2 was given.
++# Check whether --with-fastcgi2 was given.
+ if test "${with_fastcgi2+set}" = set; then
+- withval="$with_fastcgi2"
++ withval=$with_fastcgi2;
++fi
+
+-fi;
+
+-# Check whether --with-fastcgi3 or --without-fastcgi3 was given.
++# Check whether --with-fastcgi3 was given.
+ if test "${with_fastcgi3+set}" = set; then
+- withval="$with_fastcgi3"
++ withval=$with_fastcgi3;
++fi
+
+-fi;
+
+-# Check whether --with-bdb or --without-bdb was given.
++# Check whether --with-bdb was given.
+ if test "${with_bdb+set}" = set; then
+- withval="$with_bdb"
++ withval=$with_bdb;
++fi
+
+-fi;
+
+-# Check whether --with-bdb or --without-bdb was given.
++# Check whether --with-bdb was given.
+ if test "${with_bdb+set}" = set; then
+- withval="$with_bdb"
++ withval=$with_bdb;
++fi
+
+-fi;
+
+-# Check whether --with-bdb or --without-bdb was given.
++# Check whether --with-bdb was given.
+ if test "${with_bdb+set}" = set; then
+- withval="$with_bdb"
++ withval=$with_bdb;
++fi
+
+-fi;
+
+-# Check whether --with-sp or --without-sp was given.
++# Check whether --with-sp was given.
+ if test "${with_sp+set}" = set; then
+- withval="$with_sp"
++ withval=$with_sp;
++fi
+
+-fi;
+
+-# Check whether --with-orbacus or --without-orbacus was given.
++# Check whether --with-orbacus was given.
+ if test "${with_orbacus+set}" = set; then
+- withval="$with_orbacus"
++ withval=$with_orbacus;
++fi
+
+-fi;
+
+-# Check whether --with-orbacus2 or --without-orbacus2 was given.
++# Check whether --with-orbacus2 was given.
+ if test "${with_orbacus2+set}" = set; then
+- withval="$with_orbacus2"
++ withval=$with_orbacus2;
++fi
+
+-fi;
+
+-# Check whether --with-odbc or --without-odbc was given.
++# Check whether --with-odbc was given.
+ if test "${with_odbc+set}" = set; then
+- withval="$with_odbc"
++ withval=$with_odbc;
++fi
+
+-fi;
+
+-# Check whether --with-python or --without-python was given.
++# Check whether --with-python was given.
+ if test "${with_python+set}" = set; then
+- withval="$with_python"
++ withval=$with_python;
++fi
+
+-fi;
+
+-# Check whether --with-python2 or --without-python2 was given.
++# Check whether --with-python2 was given.
+ if test "${with_python2+set}" = set; then
+- withval="$with_python2"
++ withval=$with_python2;
++fi
+
+-fi;
+
+-# Check whether --with-perl or --without-perl was given.
++# Check whether --with-perl was given.
+ if test "${with_perl+set}" = set; then
+- withval="$with_perl"
++ withval=$with_perl;
++fi
+
+-fi;
+
+-# Check whether --with-perl2 or --without-perl2 was given.
++# Check whether --with-perl2 was given.
+ if test "${with_perl2+set}" = set; then
+- withval="$with_perl2"
++ withval=$with_perl2;
++fi
+
+-fi;
+
+-# Check whether --with-jni or --without-jni was given.
++# Check whether --with-jni was given.
+ if test "${with_jni+set}" = set; then
+- withval="$with_jni"
++ withval=$with_jni;
++fi
+
+-fi;
+
+-# Check whether --with-boost or --without-boost was given.
++# Check whether --with-boost was given.
+ if test "${with_boost+set}" = set; then
+- withval="$with_boost"
++ withval=$with_boost;
++fi
+
+-fi;
+
+-# Check whether --with-boost2 or --without-boost2 was given.
++# Check whether --with-boost2 was given.
+ if test "${with_boost2+set}" = set; then
+- withval="$with_boost2"
++ withval=$with_boost2;
++fi
+
+-fi;
+
+-# Check whether --with-boost-tag or --without-boost-tag was given.
++# Check whether --with-boost-tag was given.
+ if test "${with_boost_tag+set}" = set; then
+- withval="$with_boost_tag"
++ withval=$with_boost_tag;
++fi
+
+-fi;
+
+-# Check whether --with-boost-tag2 or --without-boost-tag2 was given.
++# Check whether --with-boost-tag2 was given.
+ if test "${with_boost_tag2+set}" = set; then
+- withval="$with_boost_tag2"
++ withval=$with_boost_tag2;
++fi
+
+-fi;
+
+-# Check whether --with-sqlite3 or --without-sqlite3 was given.
++# Check whether --with-sqlite3 was given.
+ if test "${with_sqlite3+set}" = set; then
+- withval="$with_sqlite3"
++ withval=$with_sqlite3;
++fi
+
+-fi;
+
+-# Check whether --with-sqlite3b or --without-sqlite3b was given.
++# Check whether --with-sqlite3b was given.
+ if test "${with_sqlite3b+set}" = set; then
+- withval="$with_sqlite3b"
++ withval=$with_sqlite3b;
++fi
+
+-fi;
+
+-# Check whether --with-icu or --without-icu was given.
++# Check whether --with-icu was given.
+ if test "${with_icu+set}" = set; then
+- withval="$with_icu"
++ withval=$with_icu;
++fi
+
+-fi;
+
+-# Check whether --with-icu2 or --without-icu2 was given.
++# Check whether --with-icu2 was given.
+ if test "${with_icu2+set}" = set; then
+- withval="$with_icu2"
++ withval=$with_icu2;
++fi
+
+-fi;
+
+-# Check whether --with-expat or --without-expat was given.
++# Check whether --with-expat was given.
+ if test "${with_expat+set}" = set; then
+- withval="$with_expat"
++ withval=$with_expat;
++fi
+
+-fi;
+
+-# Check whether --with-expat2 or --without-expat2 was given.
++# Check whether --with-expat2 was given.
+ if test "${with_expat2+set}" = set; then
+- withval="$with_expat2"
++ withval=$with_expat2;
++fi
+
+-fi;
+
+-# Check whether --with-sablot or --without-sablot was given.
++# Check whether --with-sablot was given.
+ if test "${with_sablot+set}" = set; then
+- withval="$with_sablot"
++ withval=$with_sablot;
++fi
+
+-fi;
+
+-# Check whether --with-sablot2 or --without-sablot2 was given.
++# Check whether --with-sablot2 was given.
+ if test "${with_sablot2+set}" = set; then
+- withval="$with_sablot2"
++ withval=$with_sablot2;
++fi
+
+-fi;
+
+-# Check whether --with-libxml or --without-libxml was given.
++# Check whether --with-libxml was given.
+ if test "${with_libxml+set}" = set; then
+- withval="$with_libxml"
++ withval=$with_libxml;
++fi
+
+-fi;
+
+-# Check whether --with-libxml_ or --without-libxml_ was given.
++# Check whether --with-libxml_ was given.
+ if test "${with_libxml_+set}" = set; then
+- withval="$with_libxml_"
++ withval=$with_libxml_;
++fi
+
+-fi;
+
+-# Check whether --with-libxslt or --without-libxslt was given.
++# Check whether --with-libxslt was given.
+ if test "${with_libxslt+set}" = set; then
+- withval="$with_libxslt"
++ withval=$with_libxslt;
++fi
+
+-fi;
+
+-# Check whether --with-libxslt2 or --without-libxslt2 was given.
++# Check whether --with-libxslt2 was given.
+ if test "${with_libxslt2+set}" = set; then
+- withval="$with_libxslt2"
++ withval=$with_libxslt2;
++fi
+
+-fi;
+
+-# Check whether --with-libexslt or --without-libexslt was given.
++# Check whether --with-libexslt was given.
+ if test "${with_libexslt+set}" = set; then
+- withval="$with_libexslt"
++ withval=$with_libexslt;
++fi
+
+-fi;
+
+-# Check whether --with-libexslt2 or --without-libexslt2 was given.
++# Check whether --with-libexslt2 was given.
+ if test "${with_libexslt2+set}" = set; then
+- withval="$with_libexslt2"
++ withval=$with_libexslt2;
++fi
+
+-fi;
+
+-# Check whether --with-xerces or --without-xerces was given.
++# Check whether --with-xerces was given.
+ if test "${with_xerces+set}" = set; then
+- withval="$with_xerces"
++ withval=$with_xerces;
++fi
+
+-fi;
+
+-# Check whether --with-xerces2 or --without-xerces2 was given.
++# Check whether --with-xerces2 was given.
+ if test "${with_xerces2+set}" = set; then
+- withval="$with_xerces2"
++ withval=$with_xerces2;
++fi
+
+-fi;
+
+-# Check whether --with-xalan or --without-xalan was given.
++# Check whether --with-xalan was given.
+ if test "${with_xalan+set}" = set; then
+- withval="$with_xalan"
++ withval=$with_xalan;
++fi
+
+-fi;
+
+-# Check whether --with-xalan2 or --without-xalan2 was given.
++# Check whether --with-xalan2 was given.
+ if test "${with_xalan2+set}" = set; then
+- withval="$with_xalan2"
++ withval=$with_xalan2;
++fi
+
+-fi;
+
+-# Check whether --with-zorba or --without-zorba was given.
++# Check whether --with-zorba was given.
+ if test "${with_zorba+set}" = set; then
+- withval="$with_zorba"
++ withval=$with_zorba;
++fi
+
+-fi;
+
+-# Check whether --with-zorba2 or --without-zorba2 was given.
++# Check whether --with-zorba2 was given.
+ if test "${with_zorba2+set}" = set; then
+- withval="$with_zorba2"
++ withval=$with_zorba2;
++fi
+
+-fi;
+
+-# Check whether --with-oechem or --without-oechem was given.
++# Check whether --with-oechem was given.
+ if test "${with_oechem+set}" = set; then
+- withval="$with_oechem"
++ withval=$with_oechem;
++fi
+
+-fi;
+
+-# Check whether --with-oechem2 or --without-oechem2 was given.
++# Check whether --with-oechem2 was given.
+ if test "${with_oechem2+set}" = set; then
+- withval="$with_oechem2"
++ withval=$with_oechem2;
++fi
+
+-fi;
+
+-# Check whether --with-sge or --without-sge was given.
++# Check whether --with-sge was given.
+ if test "${with_sge+set}" = set; then
+- withval="$with_sge"
++ withval=$with_sge;
++fi
+
+-fi;
+
+-# Check whether --with-sge2 or --without-sge2 was given.
++# Check whether --with-sge2 was given.
+ if test "${with_sge2+set}" = set; then
+- withval="$with_sge2"
++ withval=$with_sge2;
++fi
+
+-fi;
+
+-# Check whether --with-muparser or --without-muparser was given.
++# Check whether --with-muparser was given.
+ if test "${with_muparser+set}" = set; then
+- withval="$with_muparser"
++ withval=$with_muparser;
++fi
+
+-fi;
+
+-# Check whether --with-muparser2 or --without-muparser2 was given.
++# Check whether --with-muparser2 was given.
+ if test "${with_muparser2+set}" = set; then
+- withval="$with_muparser2"
++ withval=$with_muparser2;
++fi
+
+-fi;
+
+-# Check whether --with-hdf5 or --without-hdf5 was given.
++# Check whether --with-hdf5 was given.
+ if test "${with_hdf5+set}" = set; then
+- withval="$with_hdf5"
++ withval=$with_hdf5;
++fi
+
+-fi;
+
+-# Check whether --with-hdf5b or --without-hdf5b was given.
++# Check whether --with-hdf5b was given.
+ if test "${with_hdf5b+set}" = set; then
+- withval="$with_hdf5b"
++ withval=$with_hdf5b;
++fi
+
+-fi;
+
+-# Check whether --with-gif or --without-gif was given.
++# Check whether --with-gif was given.
+ if test "${with_gif+set}" = set; then
+- withval="$with_gif"
++ withval=$with_gif;
++fi
+
+-fi;
+
+-# Check whether --with-gif2 or --without-gif2 was given.
++# Check whether --with-gif2 was given.
+ if test "${with_gif2+set}" = set; then
+- withval="$with_gif2"
++ withval=$with_gif2;
++fi
+
+-fi;
+
+-# Check whether --with-jpeg or --without-jpeg was given.
++# Check whether --with-jpeg was given.
+ if test "${with_jpeg+set}" = set; then
+- withval="$with_jpeg"
++ withval=$with_jpeg;
++fi
+
+-fi;
+
+-# Check whether --with-jpeg2 or --without-jpeg2 was given.
++# Check whether --with-jpeg2 was given.
+ if test "${with_jpeg2+set}" = set; then
+- withval="$with_jpeg2"
++ withval=$with_jpeg2;
++fi
+
+-fi;
+
+-# Check whether --with-png or --without-png was given.
++# Check whether --with-png was given.
+ if test "${with_png+set}" = set; then
+- withval="$with_png"
++ withval=$with_png;
++fi
+
+-fi;
+
+-# Check whether --with-png2 or --without-png2 was given.
++# Check whether --with-png2 was given.
+ if test "${with_png2+set}" = set; then
+- withval="$with_png2"
++ withval=$with_png2;
++fi
+
+-fi;
+
+-# Check whether --with-tiff or --without-tiff was given.
++# Check whether --with-tiff was given.
+ if test "${with_tiff+set}" = set; then
+- withval="$with_tiff"
++ withval=$with_tiff;
++fi
+
+-fi;
+
+-# Check whether --with-tiff2 or --without-tiff2 was given.
++# Check whether --with-tiff2 was given.
+ if test "${with_tiff2+set}" = set; then
+- withval="$with_tiff2"
++ withval=$with_tiff2;
++fi
+
+-fi;
+
+-# Check whether --with-xpm or --without-xpm was given.
++# Check whether --with-xpm was given.
+ if test "${with_xpm+set}" = set; then
+- withval="$with_xpm"
++ withval=$with_xpm;
++fi
+
+-fi;
+
+-# Check whether --with-xpm2 or --without-xpm2 was given.
++# Check whether --with-xpm2 was given.
+ if test "${with_xpm2+set}" = set; then
+- withval="$with_xpm2"
++ withval=$with_xpm2;
++fi
+
+-fi;
+
+-# Check whether --with-magic or --without-magic was given.
++# Check whether --with-magic was given.
+ if test "${with_magic+set}" = set; then
+- withval="$with_magic"
++ withval=$with_magic;
++fi
+
+-fi;
+
+-# Check whether --with-magic2 or --without-magic2 was given.
++# Check whether --with-magic2 was given.
+ if test "${with_magic2+set}" = set; then
+- withval="$with_magic2"
++ withval=$with_magic2;
++fi
+
+-fi;
+
+-# Check whether --with-curl or --without-curl was given.
++# Check whether --with-curl was given.
+ if test "${with_curl+set}" = set; then
+- withval="$with_curl"
++ withval=$with_curl;
++fi
+
+-fi;
+
+-# Check whether --with-curl2 or --without-curl2 was given.
++# Check whether --with-curl2 was given.
+ if test "${with_curl2+set}" = set; then
+- withval="$with_curl2"
++ withval=$with_curl2;
++fi
+
+-fi;
+
+-# Check whether --with-mimetic or --without-mimetic was given.
++# Check whether --with-mimetic was given.
+ if test "${with_mimetic+set}" = set; then
+- withval="$with_mimetic"
++ withval=$with_mimetic;
++fi
+
+-fi;
+
+-# Check whether --with-mimetic2 or --without-mimetic2 was given.
++# Check whether --with-mimetic2 was given.
+ if test "${with_mimetic2+set}" = set; then
+- withval="$with_mimetic2"
++ withval=$with_mimetic2;
++fi
++
++
++# Check whether --with-gsoap was given.
++if test "${with_gsoap+set}" = set; then
++ withval=$with_gsoap;
++fi
++
++
++# Check whether --with-gsoap2 was given.
++if test "${with_gsoap2+set}" = set; then
++ withval=$with_gsoap2;
++fi
++
++
++# Check whether --with-mongodb was given.
++if test "${with_mongodb+set}" = set; then
++ withval=$with_mongodb;
++fi
+
+-fi;
+
+-# Check whether --with-3psw or --without-3psw was given.
++# Check whether --with-mongodb2 was given.
++if test "${with_mongodb2+set}" = set; then
++ withval=$with_mongodb2;
++fi
++
++
++# Check whether --with-3psw was given.
+ if test "${with_3psw+set}" = set; then
+- withval="$with_3psw"
++ withval=$with_3psw;
++fi
+
+-fi;
+
+-# Check whether --with-3psw2 or --without-3psw2 was given.
++# Check whether --with-3psw2 was given.
+ if test "${with_3psw2+set}" = set; then
+- withval="$with_3psw2"
++ withval=$with_3psw2;
++fi
+
+-fi;
+
+ ## Optional projects
+
+-# Check whether --with-local-lbsm or --without-local-lbsm was given.
++# Check whether --with-local-lbsm was given.
+ if test "${with_local_lbsm+set}" = set; then
+- withval="$with_local_lbsm"
++ withval=$with_local_lbsm;
++fi
+
+-fi;
+
+-# Check whether --with-ncbi-crypt or --without-ncbi-crypt was given.
++# Check whether --with-ncbi-crypt was given.
+ if test "${with_ncbi_crypt+set}" = set; then
+- withval="$with_ncbi_crypt"
++ withval=$with_ncbi_crypt;
++fi
+
+-fi;
+
+-# Check whether --with-connext or --without-connext was given.
++# Check whether --with-connext was given.
+ if test "${with_connext+set}" = set; then
+- withval="$with_connext"
++ withval=$with_connext;
++fi
+
+-fi;
+
+-# Check whether --with-serial or --without-serial was given.
++# Check whether --with-serial was given.
+ if test "${with_serial+set}" = set; then
+- withval="$with_serial"
++ withval=$with_serial;
++fi
+
+-fi;
+
+-# Check whether --with-objects or --without-objects was given.
++# Check whether --with-objects was given.
+ if test "${with_objects+set}" = set; then
+- withval="$with_objects"
++ withval=$with_objects;
++fi
+
+-fi;
+
+-# Check whether --with-dbapi or --without-dbapi was given.
++# Check whether --with-dbapi was given.
+ if test "${with_dbapi+set}" = set; then
+- withval="$with_dbapi"
++ withval=$with_dbapi;
++fi
+
+-fi;
+
+-# Check whether --with-app or --without-app was given.
++# Check whether --with-app was given.
+ if test "${with_app+set}" = set; then
+- withval="$with_app"
++ withval=$with_app;
++fi
+
+-fi;
+
+-# Check whether --with-ctools or --without-ctools was given.
++# Check whether --with-ctools was given.
+ if test "${with_ctools+set}" = set; then
+- withval="$with_ctools"
++ withval=$with_ctools;
++fi
+
+-fi;
+
+-# Check whether --with-gui or --without-gui was given.
++# Check whether --with-gui was given.
+ if test "${with_gui+set}" = set; then
+- withval="$with_gui"
++ withval=$with_gui;
++fi
+
+-fi;
+
+-# Check whether --with-algo or --without-algo was given.
++# Check whether --with-algo was given.
+ if test "${with_algo+set}" = set; then
+- withval="$with_algo"
++ withval=$with_algo;
++fi
+
+-fi;
+
+-# Check whether --with-internal or --without-internal was given.
++# Check whether --with-internal was given.
+ if test "${with_internal+set}" = set; then
+- withval="$with_internal"
++ withval=$with_internal;
++fi
+
+-fi;
+
+-# Check whether --with-internal2 or --without-internal2 was given.
++# Check whether --with-internal2 was given.
+ if test "${with_internal2+set}" = set; then
+- withval="$with_internal2"
++ withval=$with_internal2;
++fi
+
+-fi;
+
+-# Check whether --with-gbench or --without-gbench was given.
++# Check whether --with-gbench was given.
+ if test "${with_gbench+set}" = set; then
+- withval="$with_gbench"
++ withval=$with_gbench;
++fi
+
+-fi;
+
+-# Check whether --with-gbench2 or --without-gbench2 was given.
++# Check whether --with-gbench2 was given.
+ if test "${with_gbench2+set}" = set; then
+- withval="$with_gbench2"
++ withval=$with_gbench2;
++fi
+
+-fi;
+
+ ## Manuals
+
+-# Check whether --with-manuals or --without-manuals was given.
++# Check whether --with-manuals was given.
+ if test "${with_manuals+set}" = set; then
+- withval="$with_manuals"
+-
+-fi;
+-
+-
+-#### Check the passed arguments against the list of available ones
+-x_with_list="\
+-debug max-debug symbols optimization profiling tcheck dll static static-exe \
+-plugin-auto-load bundles bin-release mt 64 universal exe runpath hard-runpath \
+-lfs limited-linker \
+-autodep suffix hostspec version execopy bincopy lib-rebuilds lib-rebuilds=ask \
+-deactivation makefile-auto-update projects flat-makefile configure-dialog \
+-check ncbi-public strip pch caution ccache distcc \
+-ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+-geo included-geo \
+-z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
+-ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
+-bdb python perl jni sqlite3 icu boost boost-tag \
+-sp expat sablot libxml libxslt libexslt xerces xalan zorba \
+-oechem sge muparser hdf5 \
+-gif jpeg tiff png xpm magic curl mimetic 3psw \
+-local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench"
+-
+-x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+-
+-
+-for x_arg in "$@" ; do
+- if test -z "$x_arg" ; then
+- continue
++ withval=$with_manuals;
+ fi
+
+- x_okay=
+- for x_desc in $x_with_list ; do
+- if test "$x_arg" = "$x_desc" ; then
+- x_okay="okay"
+- break
+- fi
+- done
+- if test "$x_okay" = "okay" ; then
+- continue
+- fi
+
+- case "$x_arg" in
+- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
+- | --with-relative-runpath= | --x-includes= | --x-libraries= )
+- { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
+-echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
+- { (exit 1); exit 1; }; }
+- ;;
+
+- --with-extra-action=* | --with-build-root=* | --with-build-root-sfx=* \
+- | --with-fake-root=* | --with-saved-settings=* \
+- | --with-projects=* | --with-check=* | --with-check-tools=* \
+- | --with-universal=* | --with-tcheck=* \
+- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
+- | [A-Z]*=* \
+- | --with-z=* | --with-bz2=* | --with-lzo=* \
+- | --with-pcre=* \
+- | --with-gcrypt=* | --with-gnutls=* | --with-openssl=* \
+- | --with-krb5=* | --with-curl=* \
+- | --with-sybase-local=* | --with-wxwidgets=* | --with-mimetic=* \
+- | --with-ftds=* | --with-mysql=* | --with-fastcgi=* \
+- | --with-sqlite3=* | --with-expat=* | --with-sablot=* \
+- | --with-icu=* | --with-xerces=* | --with-xalan=* | --with-zorba=* \
+- | --with-libxml=* | --with-libxslt=* | --with-exslt=* \
+- | --with-bdb=* | --with-odbc=* | --with-python=* | --with-perl=* \
+- | --with-freetype=* | --with-ftgl=* | --with-gif=* | --with-jpeg=* \
+- | --with-png=* | --with-tiff=* | --with-xpm=* | --with-opengl=* \
+- | --with-mesa=* | --with-glut=* | --with-glew=* | --with-oechem=* \
+- | --with-boost=* | --with-boost-tag=* | --with-orbacus=* | --with-sge=* \
+- | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
+- | --x-includes=* | --x-libraries=* | --with-3psw=* \
+- | --target=* | --with-runpath=* | --with-relative-runpath=* \
+- | --no-create | --no-recursion)
+- ;;
+
+- * )
+- { { echo "$as_me:$LINENO: error: $x_arg: unknown option; use --help to show usage" >&5
+-echo "$as_me: error: $x_arg: unknown option; use --help to show usage" >&2;}
+- { (exit 1); exit 1; }; }
+- ;;
+- esac
+-done
+
+
+ if test "$with_gbench" = "yes" ; then
+@@ -3142,6 +3951,15 @@
+ : ${with_optimization=no}
+ fi
+
++if test "$with_openmp" = yes; then
++ if test "$with_mt" = no; then
++ { { echo "$as_me:$LINENO: error: incompatible options: --without-mt but --with-openmp" >&5
++echo "$as_me: error: incompatible options: --without-mt but --with-openmp" >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ : ${with_mt=yes}
++fi
++
+ #### Check for special options
+ if test "$with_extra_action" = "yes" ; then
+ { { echo "$as_me:$LINENO: error: --with-extra-action must have a value after =" >&5
+@@ -3201,6 +4019,10 @@
+ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
+ esac
+ fi
++# Generally save any originally specified flags.
++USER_CFLAGS=$CFLAGS
++USER_CXXFLAGS=$CXXFLAGS
++USER_LDFLAGS=$LDFLAGS
+
+ #### Always define this
+
+@@ -3212,82 +4034,117 @@
+
+ #### Get the running host's properties
+ ac_aux_dir=
+-for ac_dir in src/build-system $srcdir/src/build-system; do
+- if test -f $ac_dir/install-sh; then
++for ac_dir in src/build-system "$srcdir"/src/build-system; do
++ if test -f "$ac_dir/install-sh"; then
+ ac_aux_dir=$ac_dir
+ ac_install_sh="$ac_aux_dir/install-sh -c"
+ break
+- elif test -f $ac_dir/install.sh; then
++ elif test -f "$ac_dir/install.sh"; then
+ ac_aux_dir=$ac_dir
+ ac_install_sh="$ac_aux_dir/install.sh -c"
+ break
+- elif test -f $ac_dir/shtool; then
++ elif test -f "$ac_dir/shtool"; then
+ ac_aux_dir=$ac_dir
+ ac_install_sh="$ac_aux_dir/shtool install -c"
+ break
+ fi
+ done
+ if test -z "$ac_aux_dir"; then
+- { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in src/build-system $srcdir/src/build-system" >&5
+-echo "$as_me: error: cannot find install-sh or install.sh in src/build-system $srcdir/src/build-system" >&2;}
++ { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in src/build-system \"$srcdir\"/src/build-system" >&5
++echo "$as_me: error: cannot find install-sh or install.sh in src/build-system \"$srcdir\"/src/build-system" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+-ac_config_guess="$SHELL $ac_aux_dir/config.guess"
+-ac_config_sub="$SHELL $ac_aux_dir/config.sub"
+-ac_configure="$SHELL $ac_aux_dir/configure" # This should be Cygnus configure.
++
++# These three variables are undocumented and unsupported,
++# and are intended to be withdrawn in a future Autoconf release.
++# They can cause serious problems if a builder's source tree is in a directory
++# whose full name contains unusual characters.
++ac_config_guess="$SHELL $ac_aux_dir/config.guess" # Please don't use this var.
++ac_config_sub="$SHELL $ac_aux_dir/config.sub" # Please don't use this var.
++ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var.
++
+
+ # Make sure we can run config.sub.
+-$ac_config_sub sun4 >/dev/null 2>&1 ||
+- { { echo "$as_me:$LINENO: error: cannot run $ac_config_sub" >&5
+-echo "$as_me: error: cannot run $ac_config_sub" >&2;}
++$SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
++ { { echo "$as_me:$LINENO: error: cannot run $SHELL $ac_aux_dir/config.sub" >&5
++echo "$as_me: error: cannot run $SHELL $ac_aux_dir/config.sub" >&2;}
+ { (exit 1); exit 1; }; }
+
+-echo "$as_me:$LINENO: checking build system type" >&5
+-echo $ECHO_N "checking build system type... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking build system type" >&5
++echo $ECHO_N "checking build system type... $ECHO_C" >&6; }
+ if test "${ac_cv_build+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_cv_build_alias=$build_alias
+-test -z "$ac_cv_build_alias" &&
+- ac_cv_build_alias=`$ac_config_guess`
+-test -z "$ac_cv_build_alias" &&
++ ac_build_alias=$build_alias
++test "x$ac_build_alias" = x &&
++ ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
++test "x$ac_build_alias" = x &&
+ { { echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
+ echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
+ { (exit 1); exit 1; }; }
+-ac_cv_build=`$ac_config_sub $ac_cv_build_alias` ||
+- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_build_alias failed" >&5
+-echo "$as_me: error: $ac_config_sub $ac_cv_build_alias failed" >&2;}
++ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
++ { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
++echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&2;}
+ { (exit 1); exit 1; }; }
+
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_build" >&5
+-echo "${ECHO_T}$ac_cv_build" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_build" >&5
++echo "${ECHO_T}$ac_cv_build" >&6; }
++case $ac_cv_build in
++*-*-*) ;;
++*) { { echo "$as_me:$LINENO: error: invalid value of canonical build" >&5
++echo "$as_me: error: invalid value of canonical build" >&2;}
++ { (exit 1); exit 1; }; };;
++esac
+ build=$ac_cv_build
+-build_cpu=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
+-build_vendor=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
+-build_os=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
++ac_save_IFS=$IFS; IFS='-'
++set x $ac_cv_build
++shift
++build_cpu=$1
++build_vendor=$2
++shift; shift
++# Remember, the first character of IFS is used to create $*,
++# except with old shells:
++build_os=$*
++IFS=$ac_save_IFS
++case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
+
+
+-echo "$as_me:$LINENO: checking host system type" >&5
+-echo $ECHO_N "checking host system type... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking host system type" >&5
++echo $ECHO_N "checking host system type... $ECHO_C" >&6; }
+ if test "${ac_cv_host+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_cv_host_alias=$host_alias
+-test -z "$ac_cv_host_alias" &&
+- ac_cv_host_alias=$ac_cv_build_alias
+-ac_cv_host=`$ac_config_sub $ac_cv_host_alias` ||
+- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_host_alias failed" >&5
+-echo "$as_me: error: $ac_config_sub $ac_cv_host_alias failed" >&2;}
++ if test "x$host_alias" = x; then
++ ac_cv_host=$ac_cv_build
++else
++ ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
++ { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
++echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&2;}
+ { (exit 1); exit 1; }; }
++fi
+
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_host" >&5
+-echo "${ECHO_T}$ac_cv_host" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_host" >&5
++echo "${ECHO_T}$ac_cv_host" >&6; }
++case $ac_cv_host in
++*-*-*) ;;
++*) { { echo "$as_me:$LINENO: error: invalid value of canonical host" >&5
++echo "$as_me: error: invalid value of canonical host" >&2;}
++ { (exit 1); exit 1; }; };;
++esac
+ host=$ac_cv_host
+-host_cpu=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
+-host_vendor=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
+-host_os=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
++ac_save_IFS=$IFS; IFS='-'
++set x $ac_cv_host
++shift
++host_cpu=$1
++host_vendor=$2
++shift; shift
++# Remember, the first character of IFS is used to create $*,
++# except with old shells:
++host_os=$*
++IFS=$ac_save_IFS
++case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
+
+
+
+@@ -3326,8 +4183,8 @@
+ # SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
+ # OS/2's system install, which has a completely different semantic
+ # ./install, which can be erroneously created by make from ./install.sh.
+-echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
+-echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
++echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6; }
+ if test -z "$INSTALL"; then
+ if test "${ac_cv_path_install+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+@@ -3349,7 +4206,7 @@
+ # by default.
+ for ac_prog in ginstall scoinst install; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; }; then
+ if test $ac_prog = install &&
+ grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
+ # AIX install. It has an incompatible calling convention.
+@@ -3368,21 +4225,22 @@
+ ;;
+ esac
+ done
++IFS=$as_save_IFS
+
+
+ fi
+ if test "${ac_cv_path_install+set}" = set; then
+ INSTALL=$ac_cv_path_install
+ else
+- # As a last resort, use the slow shell script. We don't cache a
+- # path for INSTALL within a source directory, because that will
++ # As a last resort, use the slow shell script. Don't cache a
++ # value for INSTALL within a source directory, because that will
+ # break other packages using the cache if that directory is
+- # removed, or if the path is relative.
++ # removed, or if the value is a relative name.
+ INSTALL=$ac_install_sh
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $INSTALL" >&5
+-echo "${ECHO_T}$INSTALL" >&6
++{ echo "$as_me:$LINENO: result: $INSTALL" >&5
++echo "${ECHO_T}$INSTALL" >&6; }
+
+ # Use test -z because SunOS4 sh mishandles braces in ${var-val}.
+ # It thinks the first close brace ends the variable substitution.
+@@ -3393,9 +4251,26 @@
+ test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
+
+
++#### Point ICC at a suitable GCC version ASAP.
++case "/$CXX" in
++ */icpc )
++ if test -d /usr/local/gcc; then
++ case "`$CXX -dumpversion`:$host_cpu" in
++ *:i?86) v=4.4.5 ;;
++ ?.* | 1[01].* ) v=4.0.1 ;;
++ *) v=4.4.2 ;;
++ esac
++ gcc=/usr/local/gcc/$v/bin/gcc
++ if test -x $gcc; then
++ CC="$CC -gcc-name=$gcc"
++ CXX="$CXX -gcc-name=$gcc"
++ fi
++ fi
++ ;;
++esac
+
+ #### C and C++ compilers
+-ac_ext=cc
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+@@ -3409,8 +4284,8 @@
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
+ set dummy ${ac_tool_prefix}gcc; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_CC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -3423,32 +4298,34 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="${ac_tool_prefix}gcc"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ CC=$ac_cv_prog_CC
+ if test -n "$CC"; then
+- echo "$as_me:$LINENO: result: $CC" >&5
+-echo "${ECHO_T}$CC" >&6
++ { echo "$as_me:$LINENO: result: $CC" >&5
++echo "${ECHO_T}$CC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ fi
+ if test -z "$ac_cv_prog_CC"; then
+ ac_ct_CC=$CC
+ # Extract the first word of "gcc", so it can be a program name with args.
+ set dummy gcc; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -3461,26 +4338,41 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CC="gcc"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ ac_ct_CC=$ac_cv_prog_ac_ct_CC
+ if test -n "$ac_ct_CC"; then
+- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+-echo "${ECHO_T}$ac_ct_CC" >&6
++ { echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
++echo "${ECHO_T}$ac_ct_CC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++ if test "x$ac_ct_CC" = x; then
++ CC=""
++ else
++ case $cross_compiling:$ac_tool_warned in
++yes:)
++{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&5
++echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&2;}
++ac_tool_warned=yes ;;
++esac
+ CC=$ac_ct_CC
++ fi
+ else
+ CC="$ac_cv_prog_CC"
+ fi
+@@ -3489,8 +4381,8 @@
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
+ set dummy ${ac_tool_prefix}cc; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_CC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -3503,131 +4395,93 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="${ac_tool_prefix}cc"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ CC=$ac_cv_prog_CC
+ if test -n "$CC"; then
+- echo "$as_me:$LINENO: result: $CC" >&5
+-echo "${ECHO_T}$CC" >&6
++ { echo "$as_me:$LINENO: result: $CC" >&5
++echo "${ECHO_T}$CC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ fi
+-if test -z "$ac_cv_prog_CC"; then
+- ac_ct_CC=$CC
++fi
++if test -z "$CC"; then
+ # Extract the first word of "cc", so it can be a program name with args.
+ set dummy cc; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_prog_CC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- if test -n "$ac_ct_CC"; then
+- ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
++ if test -n "$CC"; then
++ ac_cv_prog_CC="$CC" # Let the user override the test.
+ else
++ ac_prog_rejected=no
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+ for as_dir in $PATH
+ do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_prog_ac_ct_CC="cc"
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
++ ac_prog_rejected=yes
++ continue
++ fi
++ ac_cv_prog_CC="cc"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+-fi
+-fi
+-ac_ct_CC=$ac_cv_prog_ac_ct_CC
+-if test -n "$ac_ct_CC"; then
+- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+-echo "${ECHO_T}$ac_ct_CC" >&6
+-else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
+-fi
+-
+- CC=$ac_ct_CC
+-else
+- CC="$ac_cv_prog_CC"
+-fi
+-
+-fi
+-if test -z "$CC"; then
+- # Extract the first word of "cc", so it can be a program name with args.
+-set dummy cc; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_prog_CC+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- if test -n "$CC"; then
+- ac_cv_prog_CC="$CC" # Let the user override the test.
+-else
+- ac_prog_rejected=no
+-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-for as_dir in $PATH
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
+- ac_prog_rejected=yes
+- continue
+- fi
+- ac_cv_prog_CC="cc"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
+- fi
+-done
+-done
+-
+-if test $ac_prog_rejected = yes; then
+- # We found a bogon in the path, so make sure we never use it.
+- set dummy $ac_cv_prog_CC
+- shift
+- if test $# != 0; then
+- # We chose a different compiler from the bogus one.
+- # However, it has the same basename, so the bogon will be chosen
+- # first if we set CC to just the basename; use the full file name.
+- shift
+- ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
++if test $ac_prog_rejected = yes; then
++ # We found a bogon in the path, so make sure we never use it.
++ set dummy $ac_cv_prog_CC
++ shift
++ if test $# != 0; then
++ # We chose a different compiler from the bogus one.
++ # However, it has the same basename, so the bogon will be chosen
++ # first if we set CC to just the basename; use the full file name.
++ shift
++ ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
+ fi
+ fi
+ fi
+ fi
+ CC=$ac_cv_prog_CC
+ if test -n "$CC"; then
+- echo "$as_me:$LINENO: result: $CC" >&5
+-echo "${ECHO_T}$CC" >&6
++ { echo "$as_me:$LINENO: result: $CC" >&5
++echo "${ECHO_T}$CC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ fi
+ if test -z "$CC"; then
+ if test -n "$ac_tool_prefix"; then
+- for ac_prog in cl
++ for ac_prog in cl.exe
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+ set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_CC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -3640,36 +4494,38 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ CC=$ac_cv_prog_CC
+ if test -n "$CC"; then
+- echo "$as_me:$LINENO: result: $CC" >&5
+-echo "${ECHO_T}$CC" >&6
++ { echo "$as_me:$LINENO: result: $CC" >&5
++echo "${ECHO_T}$CC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ test -n "$CC" && break
+ done
+ fi
+ if test -z "$CC"; then
+ ac_ct_CC=$CC
+- for ac_prog in cl
++ for ac_prog in cl.exe
+ do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+ set dummy $ac_prog; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -3682,30 +4538,46 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CC="$ac_prog"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ ac_ct_CC=$ac_cv_prog_ac_ct_CC
+ if test -n "$ac_ct_CC"; then
+- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+-echo "${ECHO_T}$ac_ct_CC" >&6
++ { echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
++echo "${ECHO_T}$ac_ct_CC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ test -n "$ac_ct_CC" && break
+ done
+
++ if test "x$ac_ct_CC" = x; then
++ CC=""
++ else
++ case $cross_compiling:$ac_tool_warned in
++yes:)
++{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&5
++echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&2;}
++ac_tool_warned=yes ;;
++esac
+ CC=$ac_ct_CC
+ fi
++fi
+
+ fi
+
+@@ -3717,21 +4589,35 @@
+ { (exit 1); exit 1; }; }
+
+ # Provide some information about the compiler.
+-echo "$as_me:$LINENO:" \
+- "checking for C compiler version" >&5
++echo "$as_me:$LINENO: checking for C compiler version" >&5
+ ac_compiler=`set X $ac_compile; echo $2`
+-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
+- (eval $ac_compiler --version </dev/null >&5) 2>&5
++{ (ac_try="$ac_compiler --version >&5"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compiler --version >&5") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -v </dev/null >&5\"") >&5
+- (eval $ac_compiler -v </dev/null >&5) 2>&5
++{ (ac_try="$ac_compiler -v >&5"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compiler -v >&5") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -V </dev/null >&5\"") >&5
+- (eval $ac_compiler -V </dev/null >&5) 2>&5
++{ (ac_try="$ac_compiler -V >&5"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compiler -V >&5") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+@@ -3756,46 +4642,70 @@
+ # Try to create an executable without -o first, disregard a.out.
+ # It will help us diagnose broken compilers, and finding out an intuition
+ # of exeext.
+-echo "$as_me:$LINENO: checking for C compiler default output file name" >&5
+-echo $ECHO_N "checking for C compiler default output file name... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for C compiler default output file name" >&5
++echo $ECHO_N "checking for C compiler default output file name... $ECHO_C" >&6; }
+ ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
+-if { (eval echo "$as_me:$LINENO: \"$ac_link_default\"") >&5
+- (eval $ac_link_default) 2>&5
++#
++# List of possible output files, starting from the most likely.
++# The algorithm is not robust to junk in `.', hence go to wildcards (a.*)
++# only as a last resort. b.out is created by i960 compilers.
++ac_files='a_out.exe a.exe conftest.exe a.out conftest a.* conftest.* b.out'
++#
++# The IRIX 6 linker writes into existing files which may not be
++# executable, retaining their permissions. Remove them first so a
++# subsequent execution test works.
++ac_rmfiles=
++for ac_file in $ac_files
++do
++ case $ac_file in
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
++ * ) ac_rmfiles="$ac_rmfiles $ac_file";;
++ esac
++done
++rm -f $ac_rmfiles
++
++if { (ac_try="$ac_link_default"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link_default") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+- # Find the output, starting from the most likely. This scheme is
+-# not robust to junk in `.', hence go to wildcards (a.*) only as a last
+-# resort.
+-
+-# Be careful to initialize this variable, since it used to be cached.
+-# Otherwise an old cache value of `no' led to `EXEEXT = no' in a Makefile.
+-ac_cv_exeext=
+-# b.out is created by i960 compilers.
+-for ac_file in a_out.exe a.exe conftest.exe a.out conftest a.* conftest.* b.out
++ # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
++# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
++# in a Makefile. We should not override ac_cv_exeext if it was cached,
++# so that the user can short-circuit this test for compilers unknown to
++# Autoconf.
++for ac_file in $ac_files
+ do
+ test -f "$ac_file" || continue
+ case $ac_file in
+- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj )
+- ;;
+- conftest.$ac_ext )
+- # This is the source file.
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj )
+ ;;
+ [ab].out )
+ # We found the default executable, but exeext='' is most
+ # certainly right.
+ break;;
+ *.* )
++ if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
++ then :; else
+ ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+- # FIXME: I believe we export ac_cv_exeext for Libtool,
+- # but it would be cool to find out if it's true. Does anybody
+- # maintain Libtool? --akim.
+- export ac_cv_exeext
++ fi
++ # We set ac_cv_exeext here because the later test for it is not
++ # safe: cross compilers may not add the suffix if given an `-o'
++ # argument, so we may need to know it at that point already.
++ # Even if this section looks crufty: it has the advantage of
++ # actually working.
+ break;;
+ * )
+ break;;
+ esac
+ done
++test "$ac_cv_exeext" = no && ac_cv_exeext=
++
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+@@ -3808,19 +4718,23 @@
+ fi
+
+ ac_exeext=$ac_cv_exeext
+-echo "$as_me:$LINENO: result: $ac_file" >&5
+-echo "${ECHO_T}$ac_file" >&6
++{ echo "$as_me:$LINENO: result: $ac_file" >&5
++echo "${ECHO_T}$ac_file" >&6; }
+
+-# Check the compiler produces executables we can run. If not, either
++# Check that the compiler produces executables we can run. If not, either
+ # the compiler is broken, or we cross compile.
+-echo "$as_me:$LINENO: checking whether the C compiler works" >&5
+-echo $ECHO_N "checking whether the C compiler works... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether the C compiler works" >&5
++echo $ECHO_N "checking whether the C compiler works... $ECHO_C" >&6; }
+ # FIXME: These cross compiler hacks should be removed for Autoconf 3.0
+ # If not cross compiling, check that we can run a simple program.
+ if test "$cross_compiling" != yes; then
+ if { ac_try='./$ac_file'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -3839,22 +4753,27 @@
+ fi
+ fi
+ fi
+-echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6
++{ echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
+
+ rm -f a.out a.exe conftest$ac_cv_exeext b.out
+ ac_clean_files=$ac_clean_files_save
+-# Check the compiler produces executables we can run. If not, either
++# Check that the compiler produces executables we can run. If not, either
+ # the compiler is broken, or we cross compile.
+-echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
+-echo $ECHO_N "checking whether we are cross compiling... $ECHO_C" >&6
+-echo "$as_me:$LINENO: result: $cross_compiling" >&5
+-echo "${ECHO_T}$cross_compiling" >&6
+-
+-echo "$as_me:$LINENO: checking for suffix of executables" >&5
+-echo $ECHO_N "checking for suffix of executables... $ECHO_C" >&6
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++{ echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
++echo $ECHO_N "checking whether we are cross compiling... $ECHO_C" >&6; }
++{ echo "$as_me:$LINENO: result: $cross_compiling" >&5
++echo "${ECHO_T}$cross_compiling" >&6; }
++
++{ echo "$as_me:$LINENO: checking for suffix of executables" >&5
++echo $ECHO_N "checking for suffix of executables... $ECHO_C" >&6; }
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+@@ -3865,9 +4784,8 @@
+ for ac_file in conftest.exe conftest conftest.*; do
+ test -f "$ac_file" || continue
+ case $ac_file in
+- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj ) ;;
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
+ *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+- export ac_cv_exeext
+ break;;
+ * ) break;;
+ esac
+@@ -3881,14 +4799,14 @@
+ fi
+
+ rm -f conftest$ac_cv_exeext
+-echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
+-echo "${ECHO_T}$ac_cv_exeext" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
++echo "${ECHO_T}$ac_cv_exeext" >&6; }
+
+ rm -f conftest.$ac_ext
+ EXEEXT=$ac_cv_exeext
+ ac_exeext=$EXEEXT
+-echo "$as_me:$LINENO: checking for suffix of object files" >&5
+-echo $ECHO_N "checking for suffix of object files... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for suffix of object files" >&5
++echo $ECHO_N "checking for suffix of object files... $ECHO_C" >&6; }
+ if test "${ac_cv_objext+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -3908,14 +4826,20 @@
+ }
+ _ACEOF
+ rm -f conftest.o conftest.obj
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>&5
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+- for ac_file in `(ls conftest.o conftest.obj; ls conftest.*) 2>/dev/null`; do
++ for ac_file in conftest.o conftest.obj conftest.*; do
++ test -f "$ac_file" || continue;
+ case $ac_file in
+- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg ) ;;
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf ) ;;
+ *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
+ break;;
+ esac
+@@ -3933,12 +4857,12 @@
+
+ rm -f conftest.$ac_cv_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
+-echo "${ECHO_T}$ac_cv_objext" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
++echo "${ECHO_T}$ac_cv_objext" >&6; }
+ OBJEXT=$ac_cv_objext
+ ac_objext=$OBJEXT
+-echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
+-echo $ECHO_N "checking whether we are using the GNU C compiler... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
++echo $ECHO_N "checking whether we are using the GNU C compiler... $ECHO_C" >&6; }
+ if test "${ac_cv_c_compiler_gnu+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -3961,24 +4885,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -3989,21 +4925,25 @@
+
+ ac_compiler_gnu=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_cv_c_compiler_gnu=$ac_compiler_gnu
+
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
+-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
++echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6; }
+ GCC=`test $ac_compiler_gnu = yes && echo yes`
+ ac_test_CFLAGS=${CFLAGS+set}
+ ac_save_CFLAGS=$CFLAGS
+-CFLAGS="-g"
+-echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
+-echo $ECHO_N "checking whether $CC accepts -g... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
++echo $ECHO_N "checking whether $CC accepts -g... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_cc_g+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
++ ac_save_c_werror_flag=$ac_c_werror_flag
++ ac_c_werror_flag=yes
++ ac_cv_prog_cc_g=no
++ CFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -4020,24 +4960,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -4046,12 +4998,131 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_prog_cc_g=no
++ CFLAGS=""
++ cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest.$ac_objext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ :
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_c_werror_flag=$ac_save_c_werror_flag
++ CFLAGS="-g"
++ cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest.$ac_objext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ac_cv_prog_cc_g=yes
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++fi
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++fi
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ ac_c_werror_flag=$ac_save_c_werror_flag
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
+-echo "${ECHO_T}$ac_cv_prog_cc_g" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
++echo "${ECHO_T}$ac_cv_prog_cc_g" >&6; }
+ if test "$ac_test_CFLAGS" = set; then
+ CFLAGS=$ac_save_CFLAGS
+ elif test $ac_cv_prog_cc_g = yes; then
+@@ -4067,12 +5138,12 @@
+ CFLAGS=
+ fi
+ fi
+-echo "$as_me:$LINENO: checking for $CC option to accept ANSI C" >&5
+-echo $ECHO_N "checking for $CC option to accept ANSI C... $ECHO_C" >&6
+-if test "${ac_cv_prog_cc_stdc+set}" = set; then
++{ echo "$as_me:$LINENO: checking for $CC option to accept ISO C89" >&5
++echo $ECHO_N "checking for $CC option to accept ISO C89... $ECHO_C" >&6; }
++if test "${ac_cv_prog_cc_c89+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_cv_prog_cc_stdc=no
++ ac_cv_prog_cc_c89=no
+ ac_save_CC=$CC
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -4106,12 +5177,17 @@
+ /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has
+ function prototypes and stuff, but not '\xHH' hex character constants.
+ These don't provoke an error unfortunately, instead are silently treated
+- as 'x'. The following induces an error, until -std1 is added to get
++ as 'x'. The following induces an error, until -std is added to get
+ proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an
+ array size at least. It's necessary to write '\x00'==0 to get something
+- that's true only with -std1. */
++ that's true only with -std. */
+ int osf4_cc_array ['\x00' == 0 ? 1 : -1];
+
++/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
++ inside strings and character constants. */
++#define FOO(x) 'x'
++int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
++
+ int test (int i, double x);
+ struct s1 {int (*f) (int a);};
+ struct s2 {int (*f) (double a);};
+@@ -4126,265 +5202,140 @@
+ return 0;
+ }
+ _ACEOF
+-# Don't try gcc -ansi; that turns off useful extensions and
+-# breaks some systems' header files.
+-# AIX -qlanglvl=ansi
+-# Ultrix and OSF/1 -std1
+-# HP-UX 10.20 and later -Ae
+-# HP-UX older versions -Aa -D_HPUX_SOURCE
+-# SVR4 -Xc -D__EXTENSIONS__
+-for ac_arg in "" -qlanglvl=ansi -std1 -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
++for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
++ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
+ do
+ CC="$ac_save_CC $ac_arg"
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_prog_cc_stdc=$ac_arg
+-break
++ ac_cv_prog_cc_c89=$ac_arg
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext
++
++rm -f core conftest.err conftest.$ac_objext
++ test "x$ac_cv_prog_cc_c89" != "xno" && break
+ done
+-rm -f conftest.$ac_ext conftest.$ac_objext
++rm -f conftest.$ac_ext
+ CC=$ac_save_CC
+
+ fi
+-
+-case "x$ac_cv_prog_cc_stdc" in
+- x|xno)
+- echo "$as_me:$LINENO: result: none needed" >&5
+-echo "${ECHO_T}none needed" >&6 ;;
+- *)
+- echo "$as_me:$LINENO: result: $ac_cv_prog_cc_stdc" >&5
+-echo "${ECHO_T}$ac_cv_prog_cc_stdc" >&6
+- CC="$CC $ac_cv_prog_cc_stdc" ;;
++# AC_CACHE_VAL
++case "x$ac_cv_prog_cc_c89" in
++ x)
++ { echo "$as_me:$LINENO: result: none needed" >&5
++echo "${ECHO_T}none needed" >&6; } ;;
++ xno)
++ { echo "$as_me:$LINENO: result: unsupported" >&5
++echo "${ECHO_T}unsupported" >&6; } ;;
++ *)
++ CC="$CC $ac_cv_prog_cc_c89"
++ { echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5
++echo "${ECHO_T}$ac_cv_prog_cc_c89" >&6; } ;;
+ esac
+
+-# Some people use a C++ compiler to compile C. Since we use `exit',
+-# in C++ we need to declare it. In case someone uses the same compiler
+-# for both compiling C and C++ we need to have the C++ compiler decide
+-# the declaration of exit, since it's the most demanding environment.
+-cat >conftest.$ac_ext <<_ACEOF
+-#ifndef __cplusplus
+- choke me
+-#endif
+-_ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- for ac_declaration in \
+- '' \
+- 'extern "C" void std::exit (int) throw (); using std::exit;' \
+- 'extern "C" void std::exit (int); using std::exit;' \
+- 'extern "C" void exit (int) throw ();' \
+- 'extern "C" void exit (int);' \
+- 'void exit (int);'
++
++ac_ext=cpp
++ac_cpp='$CXXCPP $CPPFLAGS'
++ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
++
++ac_ext=cpp
++ac_cpp='$CXXCPP $CPPFLAGS'
++ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
++if test -z "$CXX"; then
++ if test -n "$CCC"; then
++ CXX=$CCC
++ else
++ if test -n "$ac_tool_prefix"; then
++ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
+ do
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-$ac_declaration
+-#include <stdlib.h>
+-int
+-main ()
+-{
+-exit (42);
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- :
++ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
++set dummy $ac_tool_prefix$ac_prog; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_prog_CXX+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-continue
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-$ac_declaration
+-int
+-main ()
+-{
+-exit (42);
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- break
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-done
+-rm -f conftest*
+-if test -n "$ac_declaration"; then
+- echo '#ifdef __cplusplus' >>confdefs.h
+- echo $ac_declaration >>confdefs.h
+- echo '#endif' >>confdefs.h
+-fi
+-
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-ac_ext=cc
+-ac_cpp='$CXXCPP $CPPFLAGS'
+-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+-
+-ac_ext=cc
+-ac_cpp='$CXXCPP $CPPFLAGS'
+-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+-if test -n "$ac_tool_prefix"; then
+- for ac_prog in $CCC g++ c++ gpp aCC CC cxx cc++ cl FCC KCC RCC xlC_r xlC
+- do
+- # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+-set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_prog_CXX+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- if test -n "$CXX"; then
+- ac_cv_prog_CXX="$CXX" # Let the user override the test.
+-else
+-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-for as_dir in $PATH
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
++ if test -n "$CXX"; then
++ ac_cv_prog_CXX="$CXX" # Let the user override the test.
++else
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ CXX=$ac_cv_prog_CXX
+ if test -n "$CXX"; then
+- echo "$as_me:$LINENO: result: $CXX" >&5
+-echo "${ECHO_T}$CXX" >&6
++ { echo "$as_me:$LINENO: result: $CXX" >&5
++echo "${ECHO_T}$CXX" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ test -n "$CXX" && break
+ done
+ fi
+ if test -z "$CXX"; then
+ ac_ct_CXX=$CXX
+- for ac_prog in $CCC g++ c++ gpp aCC CC cxx cc++ cl FCC KCC RCC xlC_r xlC
++ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
+ do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+ set dummy $ac_prog; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -4397,55 +5348,85 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CXX="$ac_prog"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
+ if test -n "$ac_ct_CXX"; then
+- echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
+-echo "${ECHO_T}$ac_ct_CXX" >&6
++ { echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
++echo "${ECHO_T}$ac_ct_CXX" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ test -n "$ac_ct_CXX" && break
+ done
+-test -n "$ac_ct_CXX" || ac_ct_CXX="g++"
+
++ if test "x$ac_ct_CXX" = x; then
++ CXX="g++"
++ else
++ case $cross_compiling:$ac_tool_warned in
++yes:)
++{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&5
++echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&2;}
++ac_tool_warned=yes ;;
++esac
+ CXX=$ac_ct_CXX
+ fi
++fi
+
+-
++ fi
++fi
+ # Provide some information about the compiler.
+-echo "$as_me:$LINENO:" \
+- "checking for C++ compiler version" >&5
++echo "$as_me:$LINENO: checking for C++ compiler version" >&5
+ ac_compiler=`set X $ac_compile; echo $2`
+-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
+- (eval $ac_compiler --version </dev/null >&5) 2>&5
++{ (ac_try="$ac_compiler --version >&5"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compiler --version >&5") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -v </dev/null >&5\"") >&5
+- (eval $ac_compiler -v </dev/null >&5) 2>&5
++{ (ac_try="$ac_compiler -v >&5"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compiler -v >&5") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -V </dev/null >&5\"") >&5
+- (eval $ac_compiler -V </dev/null >&5) 2>&5
++{ (ac_try="$ac_compiler -V >&5"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compiler -V >&5") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+
+-echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
+-echo $ECHO_N "checking whether we are using the GNU C++ compiler... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
++echo $ECHO_N "checking whether we are using the GNU C++ compiler... $ECHO_C" >&6; }
+ if test "${ac_cv_cxx_compiler_gnu+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -4468,24 +5449,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -4496,21 +5489,25 @@
+
+ ac_compiler_gnu=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_cv_cxx_compiler_gnu=$ac_compiler_gnu
+
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
+-echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
++echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6; }
+ GXX=`test $ac_compiler_gnu = yes && echo yes`
+ ac_test_CXXFLAGS=${CXXFLAGS+set}
+ ac_save_CXXFLAGS=$CXXFLAGS
+-CXXFLAGS="-g"
+-echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
+-echo $ECHO_N "checking whether $CXX accepts -g... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
++echo $ECHO_N "checking whether $CXX accepts -g... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_cxx_g+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
++ ac_save_cxx_werror_flag=$ac_cxx_werror_flag
++ ac_cxx_werror_flag=yes
++ ac_cv_prog_cxx_g=no
++ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -4527,24 +5524,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -4553,70 +5562,53 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_prog_cxx_g=no
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
+-echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6
+-if test "$ac_test_CXXFLAGS" = set; then
+- CXXFLAGS=$ac_save_CXXFLAGS
+-elif test $ac_cv_prog_cxx_g = yes; then
+- if test "$GXX" = yes; then
+- CXXFLAGS="-g -O2"
+- else
+- CXXFLAGS="-g"
+- fi
+-else
+- if test "$GXX" = yes; then
+- CXXFLAGS="-O2"
+- else
+- CXXFLAGS=
+- fi
+-fi
+-for ac_declaration in \
+- '' \
+- 'extern "C" void std::exit (int) throw (); using std::exit;' \
+- 'extern "C" void std::exit (int); using std::exit;' \
+- 'extern "C" void exit (int) throw ();' \
+- 'extern "C" void exit (int);' \
+- 'void exit (int);'
+-do
++ CXXFLAGS=""
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-$ac_declaration
+-#include <stdlib.h>
++
+ int
+ main ()
+ {
+-exit (42);
++
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -4625,62 +5617,92 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-continue
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
++ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-$ac_declaration
++
+ int
+ main ()
+ {
+-exit (42);
++
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- break
++ ac_cv_prog_cxx_g=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-done
+-rm -f conftest*
+-if test -n "$ac_declaration"; then
+- echo '#ifdef __cplusplus' >>confdefs.h
+- echo $ac_declaration >>confdefs.h
+- echo '#endif' >>confdefs.h
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+
+-ac_ext=cc
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++fi
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
++echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6; }
++if test "$ac_test_CXXFLAGS" = set; then
++ CXXFLAGS=$ac_save_CXXFLAGS
++elif test $ac_cv_prog_cxx_g = yes; then
++ if test "$GXX" = yes; then
++ CXXFLAGS="-g -O2"
++ else
++ CXXFLAGS="-g"
++ fi
++else
++ if test "$GXX" = yes; then
++ CXXFLAGS="-O2"
++ else
++ CXXFLAGS=
++ fi
++fi
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+@@ -4962,7 +5984,7 @@
+ echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
+ * )
+ echo "Do you still want to proceed (at your own risk)? [y/N]"
+- read answer
++ read answer <& 7
+ case "$answer" in
+ [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
+ echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
+@@ -5059,6 +6081,30 @@
+ ;;
+ * ) NCBIATOMIC_LIB=xncbi ;;
+ esac
++ case "$compiler" in
++ GCC )
++ if $CC -v | grep clang >/dev/null; then
++ :
++ # Will allegedly support -openmp at some point, but as of 3.4,
++ # just parses it as specifying an output filename: -o penmp.
++ else
++ case "$compiler_version" in
++ [123]?? | 4[01]? ) ;;
++ * ) : ${OPENMP_FLAGS=-fopenmp} ;;
++ esac
++ fi
++ ;;
++ ICC )
++ : ${OPENMP_FLAGS=-openmp}
++ ;;
++ WorkShop* )
++ : ${OPENMP_FLAGS=-xopenmp=parallel}
++ ;;
++ esac
++ if test "$with_openmp" = yes; then
++ MT_FLAG="$MT_FLAG $OPENMP_FLAGS"
++ OPENMP_FLAGS=
++ fi
+ mt_sfx="MT"
+ WithFeatures="$WithFeatures${WithFeaturesSep}MT"; WithFeaturesSep=" "
+ else
+@@ -5066,6 +6112,7 @@
+ MT_FLAG=
+ THREAD_LIBS=
+ NCBIATOMIC_LIB=
++ OPENMP_FLAGS=
+ mt_sfx=""
+ fi
+ MT_SFX="${mt_sfx}"
+@@ -5078,11 +6125,19 @@
+ APP_LDFLAGS=
+ DLL_LDFLAGS=
+
++### Should go before any test compiler runs
++
++cat >>confdefs.h <<\_ACEOF
++#define _GNU_SOURCE 1
++_ACEOF
++
++
++
+ case "$host_os:$compiler" in
+ darwin*:GCC )
+
+-echo "$as_me:$LINENO: checking whether $CC supports -Wl,-rpath" >&5
+-echo $ECHO_N "checking whether $CC supports -Wl,-rpath... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether $CC supports -Wl,-rpath" >&5
++echo $ECHO_N "checking whether $CC supports -Wl,-rpath... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_cc_wl_rpath+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -5104,24 +6159,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -5132,16 +6199,17 @@
+
+ ncbi_cv_prog_cc_wl_rpath=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LDFLAGS=$orig_LDFLAGS
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_rpath" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_cc_wl_rpath" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_rpath" >&5
++echo "${ECHO_T}$ncbi_cv_prog_cc_wl_rpath" >&6; }
+ ;;
+ *:GCC | *:ICC )
+- echo "$as_me:$LINENO: checking whether $CC has an option to export all symbols" >&5
+-echo $ECHO_N "checking whether $CC has an option to export all symbols... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether $CC has an option to export all symbols" >&5
++echo $ECHO_N "checking whether $CC has an option to export all symbols... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_cc_export_all+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -5165,24 +6233,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -5191,19 +6271,21 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ test "x$ncbi_cv_prog_cc_export_all" = "xno" || break
+ done
+ LDFLAGS=$orig_LDFLAGS
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_export_all" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_cc_export_all" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_export_all" >&5
++echo "${ECHO_T}$ncbi_cv_prog_cc_export_all" >&6; }
+ test "$ncbi_cv_prog_cc_export_all" = no || \
+ LDFLAGS="$ncbi_cv_prog_cc_export_all $LDFLAGS"
+- echo "$as_me:$LINENO: checking whether $CC supports -Wl,--{en,dis}able-new-dtags" >&5
+-echo $ECHO_N "checking whether $CC supports -Wl,--{en,dis}able-new-dtags... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether $CC supports -Wl,--{en,dis}able-new-dtags" >&5
++echo $ECHO_N "checking whether $CC supports -Wl,--{en,dis}able-new-dtags... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_cc_new_dtags+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -5225,24 +6307,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -5253,12 +6347,13 @@
+
+ ncbi_cv_prog_cc_new_dtags=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LDFLAGS=$orig_LDFLAGS
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_new_dtags" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_cc_new_dtags" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_new_dtags" >&5
++echo "${ECHO_T}$ncbi_cv_prog_cc_new_dtags" >&6; }
+ if test "$ncbi_cv_prog_cc_new_dtags" = yes; then
+ if test "$with_hard_runpath" = yes; then
+ LDFLAGS="-Wl,--disable-new-dtags $LDFLAGS"
+@@ -5269,45 +6364,231 @@
+ ;;
+ esac
+
+-#### Provide default environment setup for known platforms/compilers
+-DEPFLAGS="-M"
+-DEPFLAGS_POST="" # Needed for VisualAge
+-OBJCXX_CXXFLAGS=
+-OBJCXX_LIBS=
+-case "$host_os:$compiler" in
+- solaris2\.6:GCC )
+- echo "GCC compiler is not supported for: $host"
+- compiler=
++case "$compiler:$compiler_version" in
++ GCC:4[0-6]? | ICC:1[01]?? )
++ ncbi_cv_prog_cxx_11=no
++ ncbi_cv_prog_c_99=no
+ ;;
+-
+- solaris*:GCC )
+- CPPFLAGS="-D_XOPEN_SOURCE=500 $CPPFLAGS"
+- STRIP="@:"
++ ICC:* )
++ ncbi_cv_prog_c_99='-std=gnu99 -fgnu89-inline'
+ ;;
++esac
+
+- linux*:ICC )
+- # "incomplete type is not allowed" should be an error, not a warning!
+- CFLAGS="-we70 $CFLAGS"
+- CXXFLAGS="-we70 $CXXFLAGS"
+- case "$compiler_version" in
+- 1[1-9]?? ) MATH_LIBS=-Wl,-lm ;; # avoid static libimf in shared libs
++{ echo "$as_me:$LINENO: checking how to enable C++ '11 features in $CXX" >&5
++echo $ECHO_N "checking how to enable C++ '11 features in $CXX... $ECHO_C" >&6; }
++if test "${ncbi_cv_prog_cxx_11+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ orig_CXX=$CXX
++ ncbi_cv_prog_cxx_11=no
++ for x in -std=gnu++11 -std=gnu++0x; do
++ CXX="$orig_CXX $x"
++ cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
+ esac
+- ;;
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ncbi_cv_prog_cxx_11=$x
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
+
+- irix*:GCC )
+- if test "$with_debug" != "no" ; then
+- LDFLAGS="-LD_LAYOUT:lgot_buffer=32 $LDFLAGS"
+ fi
+- ;;
+
+- solaris*:WorkShop* )
+- CPPFLAGS="-D__EXTENSIONS__ $CPPFLAGS"
+- CXXFLAGS="+w +w2 $CXXFLAGS"
+- DEPFLAGS="-xM1"
+- LDFLAGS="-xildoff $LDFLAGS"
+- AR=${AR:="$CXX $MT_FLAG -xar -o"}
+- STRIP="@:"
+- if test "$with_symbols" = "no" -a "$with_profiling" != "yes" \
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++ test "x$ncbi_cv_prog_cxx_11" = "xno" || break
++ done
++ CXX=$orig_CXX
++fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cxx_11" >&5
++echo "${ECHO_T}$ncbi_cv_prog_cxx_11" >&6; }
++test "$ncbi_cv_prog_cxx_11" = no || CXX="$CXX $ncbi_cv_prog_cxx_11"
++
++ac_ext=c
++ac_cpp='$CPP $CPPFLAGS'
++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_c_compiler_gnu
++
++
++{ echo "$as_me:$LINENO: checking how to enable C '11 or at least '99 features in $CC" >&5
++echo $ECHO_N "checking how to enable C '11 or at least '99 features in $CC... $ECHO_C" >&6; }
++if test "${ncbi_cv_prog_c_99+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ orig_CC=$CC
++ ncbi_cv_prog_c_99=no
++ for x in -xc99=all "-std=gnu11 -fgnu89-inline" \
++ "-std=gnu1x -fgnu89-inline" \
++ "-std=gnu99 -fgnu89-inline" \
++ "-std=gnu9x -fgnu89-inline"; do
++ CC="$orig_CC $x"
++ cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ncbi_cv_prog_c_99=$x
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++ test "x$ncbi_cv_prog_c_99" = "xno" || break
++ done
++ CC=$orig_CC
++fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_c_99" >&5
++echo "${ECHO_T}$ncbi_cv_prog_c_99" >&6; }
++ac_ext=cpp
++ac_cpp='$CXXCPP $CPPFLAGS'
++ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
++
++test "$ncbi_cv_prog_c_99" = no || CC="$CC $ncbi_cv_prog_c_99"
++
++#### Provide default environment setup for known platforms/compilers
++DEPFLAGS="-M"
++DEPFLAGS_POST="" # Needed for VisualAge
++OBJCXX_CXXFLAGS=
++OBJCXX_LIBS=
++case "$host_os:$compiler" in
++ solaris2\.6:GCC )
++ echo "GCC compiler is not supported for: $host"
++ compiler=
++ ;;
++
++ solaris*:GCC )
++ # On Solaris, GCC defaults to setting _XOPEN_SOURCE (to 500) only
++ # in C++ mode. Set it for C code as well to ensure consistent
++ # header behavior, taking care to match the C standard version
++ # (as enforced by <sys/feature_tests.h>).
++ case "$ncbi_cv_prog_c_99" in
++ no) CC="$CC -D_XOPEN_SOURCE=500" ;;
++ *) CC="$CC -D_XOPEN_SOURCE=600" ;;
++ esac
++
++ STRIP="@:"
++ ;;
++
++ linux*:ICC )
++ # "incomplete type is not allowed" should be an error, not a warning!
++ CFLAGS="-we70 $CFLAGS"
++ CXXFLAGS="-we70 $CXXFLAGS"
++ case "$compiler_version" in
++ 1[1-9]?? ) MATH_LIBS=-Wl,-lm ;; # avoid static libimf in shared libs
++ esac
++ ;;
++
++ irix*:GCC )
++ if test "$with_debug" != "no" ; then
++ LDFLAGS="-LD_LAYOUT:lgot_buffer=32 $LDFLAGS"
++ fi
++ ;;
++
++ solaris*:WorkShop* )
++ CPPFLAGS="-D__EXTENSIONS__ $CPPFLAGS"
++ CXXFLAGS="+w +w2 $CXXFLAGS"
++ DEPFLAGS="-xM1"
++ LDFLAGS="-xildoff $LDFLAGS"
++ AR=${AR:="$CXX $MT_FLAG -xar -o"}
++ STRIP="@:"
++ if test "$with_symbols" = "no" -a "$with_profiling" != "yes" \
+ -a "$with_strip" = "yes" ; then
+ LDFLAGS="-s $LDFLAGS"
+ fi
+@@ -5424,11 +6705,19 @@
+ LDFLAGS="-flat_namespace $LDFLAGS"
+
+ if test "$with_ncbi_public" = yes; then
++ sdks='/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk'
++ case "$host_os" in
++ darwin?.* | darwin10.* ) # Mac OS X 10.6.x or older
+ TARGET='-mmacosx-version-min=10.5'
+- sdks='/Developer/SDKs/MacOSX10.6.sdk /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.6.sdk'
++ sdks="/Developer/SDKs/MacOSX10.6.sdk"
+ if test "$with_64:${with_universal-no}" != "yes:no"; then
+ sdks="/Developer/SDKs/MacOSX10.5.sdk $sdks"
+ fi
++ ;;
++ * )
++ TARGET='-mmacosx-version-min=10.7'
++ ;;
++ esac
+ for sdk in $sdks; do
+ if test -d "$sdk"; then
+ TARGET="-isysroot $sdk $TARGET"
+@@ -5494,7 +6783,7 @@
+ echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
+ * )
+ echo "Do you still want to proceed (at your own risk)? [y/N]"
+- read answer
++ read answer <& 7
+ case "$answer" in
+ [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
+ echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
+@@ -5698,8 +6987,8 @@
+ C_LIBS="$MATH_LIBS $C_LIBS"
+
+ if test -n "$with_64"; then
+- echo "$as_me:$LINENO: checking whether this system supports --with(out)-64" >&5
+-echo $ECHO_N "checking whether this system supports --with(out)-64... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether this system supports --with(out)-64" >&5
++echo $ECHO_N "checking whether this system supports --with(out)-64... $ECHO_C" >&6; }
+ if test "${ncbi_cv_sys_with64_ok+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -5720,24 +7009,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -5748,11 +7049,12 @@
+
+ ncbi_cv_sys_with64_ok=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_sys_with64_ok" >&5
+-echo "${ECHO_T}$ncbi_cv_sys_with64_ok" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_with64_ok" >&5
++echo "${ECHO_T}$ncbi_cv_sys_with64_ok" >&6; }
+ if test "$ncbi_cv_sys_with64_ok" = no; then
+ { { echo "$as_me:$LINENO: error: cannot continue; please try different options" >&5
+ echo "$as_me: error: cannot continue; please try different options" >&2;}
+@@ -5784,8 +7086,8 @@
+ ;;
+ GCC:* )
+ DEF_FAST_FLAGS="-O3 -finline-functions -fstrict-aliasing"
+- case "$host_os" in
+- freebsd* ) ;;
++ case "$host_os:$host_cpu:$compiler_version" in
++ freebsd* | solaris*:*86*:* | *:4[5-9]? | *:[5-9]?? ) ;;
+ * ) DEF_FAST_FLAGS="$DEF_FAST_FLAGS -ffast-math" ;;
+ esac
+ if test "$with_profiling" != "yes"; then
+@@ -5884,13 +7186,9 @@
+ solaris* )
+ CONF_f_runpath="-R"
+ ;;
+- linux*:GCC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
++ linux*:[GI]CC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
+ CONF_f_runpath="-Wl,-rpath,"
+ ;;
+- linux*:ICC )
+- # trying to use "-Wl,-rpath," here sends "ld" to endless 100% CPU loop
+- CONF_f_runpath="-Xlinker -rpath -Xlinker "
+- ;;
+ irix*:* | linux*:KCC | *:Compaq )
+ CONF_f_runpath="-rpath "
+ ;;
+@@ -5995,8 +7293,11 @@
+ LINK="$LINK -Kc++"
+ ;;
+ ICC:1???:* )
+- APP_LDFLAGS="-static-intel $APP_LDFLAGS"
+- DLL_LDFLAGS="-static-intel -nodefaultlibs $DLL_LDFLAGS"
++ # Suppress "warning #10237: -lcilkrts linked in dynamically, static
++ # library not available" which is not a problem in practice due to
++ # as-needed linkage.
++ APP_LDFLAGS="-static-intel -diag-disable 10237 $APP_LDFLAGS"
++ DLL_LDFLAGS="-static-intel -diag-disable 10237 -nodefaultlibs $DLL_LDFLAGS"
+ # Redundant for apps, but necessary for plugins to be adequately
+ # self-contained, at least on 32-bit Linux.
+ LIBS="$LIBS -lstdc++"
+@@ -6043,7 +7344,7 @@
+ echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
+ * )
+ echo "Do you still want to try build DLLs (at your own risk)? [y/N]"
+- read answer
++ read answer <& 7
+ case "$answer" in
+ [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
+ echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
+@@ -6138,18 +7439,6 @@
+
+ #### Intel compiler:: common flags and definitions
+ if test "$compiler" = "ICC" ; then
+- if test -d /usr/local/gcc; then
+- case "$compiler_version:$HOST_CPU" in
+- *:i?86) v=4.4.5 ;;
+- ???:* | 1[01]??:* ) v=4.0.1 ;;
+- *) v=4.4.2 ;;
+- esac
+- gcc=/usr/local/gcc/$v/bin/gcc
+- if test -x $gcc; then
+- CC="$CC -gcc-name=$gcc"
+- CXX="$CXX -gcc-name=$gcc"
+- fi
+- fi
+ if test -n "$icc_license" ; then
+ icc_CC="$CC"
+ icc_CXX="$CXX"
+@@ -6188,8 +7477,8 @@
+ GCCPCH="#"
+ if test "$compiler" = GCC -a "$with_pch" = "yes" \
+ -a "${with_universal-no}" = "no"; then
+- echo "$as_me:$LINENO: checking whether $CXX supports precompiled headers" >&5
+-echo $ECHO_N "checking whether $CXX supports precompiled headers... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether $CXX supports precompiled headers" >&5
++echo $ECHO_N "checking whether $CXX supports precompiled headers... $ECHO_C" >&6; }
+ if test "${ncbi_cv_cxx_pch+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6202,8 +7491,8 @@
+ ncbi_cv_cxx_pch=no
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_cxx_pch" >&5
+-echo "${ECHO_T}$ncbi_cv_cxx_pch" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_cxx_pch" >&5
++echo "${ECHO_T}$ncbi_cv_cxx_pch" >&6; }
+ if test "$ncbi_cv_cxx_pch" = "yes"; then
+ if test "$Rules" = "rules"; then
+ { echo "$as_me:$LINENO: WARNING: Your version of make does not fully support PCH-related dependencies." >&5
+@@ -6216,22 +7505,22 @@
+
+
+ #### Tools
+-echo "$as_me:$LINENO: checking whether ln -s works" >&5
+-echo $ECHO_N "checking whether ln -s works... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether ln -s works" >&5
++echo $ECHO_N "checking whether ln -s works... $ECHO_C" >&6; }
+ LN_S=$as_ln_s
+ if test "$LN_S" = "ln -s"; then
+- echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no, using $LN_S" >&5
+-echo "${ECHO_T}no, using $LN_S" >&6
++ { echo "$as_me:$LINENO: result: no, using $LN_S" >&5
++echo "${ECHO_T}no, using $LN_S" >&6; }
+ fi
+
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
+ set dummy ${ac_tool_prefix}ranlib; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_RANLIB+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6244,32 +7533,34 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ RANLIB=$ac_cv_prog_RANLIB
+ if test -n "$RANLIB"; then
+- echo "$as_me:$LINENO: result: $RANLIB" >&5
+-echo "${ECHO_T}$RANLIB" >&6
++ { echo "$as_me:$LINENO: result: $RANLIB" >&5
++echo "${ECHO_T}$RANLIB" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ fi
+ if test -z "$ac_cv_prog_RANLIB"; then
+ ac_ct_RANLIB=$RANLIB
+ # Extract the first word of "ranlib", so it can be a program name with args.
+ set dummy ranlib; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6282,35 +7573,49 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_RANLIB="ranlib"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+- test -z "$ac_cv_prog_ac_ct_RANLIB" && ac_cv_prog_ac_ct_RANLIB=":"
+ fi
+ fi
+ ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
+ if test -n "$ac_ct_RANLIB"; then
+- echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
+-echo "${ECHO_T}$ac_ct_RANLIB" >&6
++ { echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
++echo "${ECHO_T}$ac_ct_RANLIB" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++ if test "x$ac_ct_RANLIB" = x; then
++ RANLIB=":"
++ else
++ case $cross_compiling:$ac_tool_warned in
++yes:)
++{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&5
++echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
++whose name does not start with the host triplet. If you think this
++configuration is useful to you, please write to autoconf@gnu.org." >&2;}
++ac_tool_warned=yes ;;
++esac
+ RANLIB=$ac_ct_RANLIB
++ fi
+ else
+ RANLIB="$ac_cv_prog_RANLIB"
+ fi
+
+ # Extract the first word of "ar", so it can be a program name with args.
+ set dummy ar; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_AR+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6323,29 +7628,31 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_AR="ar cr"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ test -z "$ac_cv_prog_AR" && ac_cv_prog_AR="ErrorCannotFind_AR"
+ fi
+ fi
+ AR=$ac_cv_prog_AR
+ if test -n "$AR"; then
+- echo "$as_me:$LINENO: result: $AR" >&5
+-echo "${ECHO_T}$AR" >&6
++ { echo "$as_me:$LINENO: result: $AR" >&5
++echo "${ECHO_T}$AR" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test "x$RANLIB" != "x:"; then
+- echo "$as_me:$LINENO: checking ranlib's effectiveness" >&5
+-echo $ECHO_N "checking ranlib's effectiveness... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking ranlib's effectiveness" >&5
++echo $ECHO_N "checking ranlib's effectiveness... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_ranlib_effect+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6379,24 +7686,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -6407,7 +7726,8 @@
+
+ ok_without=false
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ echo $RANLIB conftest.a >&5
+ $RANLIB conftest.a >&5
+@@ -6427,24 +7747,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -6455,7 +7787,8 @@
+
+ ok_with=false
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$save_LIBS
+ case $ok_with:$ok_without in
+@@ -6466,8 +7799,8 @@
+ esac
+
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_ranlib_effect" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_ranlib_effect" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_ranlib_effect" >&5
++echo "${ECHO_T}$ncbi_cv_prog_ranlib_effect" >&6; }
+ case "$ncbi_cv_prog_ranlib_effect" in
+ negative) RANLIB=: ;;
+ unknown)
+@@ -6479,8 +7812,8 @@
+ if test "$with_strip" = yes; then
+ # Extract the first word of "strip", so it can be a program name with args.
+ set dummy strip; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_STRIP+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6493,28 +7826,30 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_STRIP="strip"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ test -z "$ac_cv_prog_STRIP" && ac_cv_prog_STRIP="@:"
+ fi
+ fi
+ STRIP=$ac_cv_prog_STRIP
+ if test -n "$STRIP"; then
+- echo "$as_me:$LINENO: result: $STRIP" >&5
+-echo "${ECHO_T}$STRIP" >&6
++ { echo "$as_me:$LINENO: result: $STRIP" >&5
++echo "${ECHO_T}$STRIP" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
+- echo "$as_me:$LINENO: checking whether strip loses runtime type information" >&5
+-echo $ECHO_N "checking whether strip loses runtime type information... $ECHO_C" >&6
++
++ { echo "$as_me:$LINENO: checking whether strip loses runtime type information" >&5
++echo $ECHO_N "checking whether strip loses runtime type information... $ECHO_C" >&6; }
+ if test "${ncbi_cv_strip_loses_rtti+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6555,8 +7890,8 @@
+ rm -rf conftest*
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_strip_loses_rtti" >&5
+-echo "${ECHO_T}$ncbi_cv_strip_loses_rtti" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_strip_loses_rtti" >&5
++echo "${ECHO_T}$ncbi_cv_strip_loses_rtti" >&6; }
+ if test "$ncbi_cv_strip_loses_rtti" = "yes"; then
+ case "$with_caution" in
+ yes )
+@@ -6568,7 +7903,7 @@
+ echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
+ * )
+ echo "Do you still want to proceed (at your own risk)? [y/N]"
+- read answer
++ read answer <& 7
+ case "$answer" in
+ [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
+ echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
+@@ -6595,8 +7930,8 @@
+ if test "$with_distcc" = "yes" ; then
+ # Extract the first word of "distcc", so it can be a program name with args.
+ set dummy distcc; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_DISTCC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6609,25 +7944,27 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_DISTCC="distcc"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ DISTCC=$ac_cv_prog_DISTCC
+ if test -n "$DISTCC"; then
+- echo "$as_me:$LINENO: result: $DISTCC" >&5
+-echo "${ECHO_T}$DISTCC" >&6
++ { echo "$as_me:$LINENO: result: $DISTCC" >&5
++echo "${ECHO_T}$DISTCC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -n "$DISTCC" ; then
+ # Test distcc reasonably thoroughly to avoid possible gotchas.
+ cat > distcctest.c << EOF
+@@ -6640,8 +7977,8 @@
+ EOF
+ DISTCC_FALLBACK=0
+ export DISTCC_FALLBACK
+- echo "$as_me:$LINENO: checking whether any distcc servers are available" >&5
+-echo $ECHO_N "checking whether any distcc servers are available... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether any distcc servers are available" >&5
++echo $ECHO_N "checking whether any distcc servers are available... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_distcc_servers+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6660,14 +7997,14 @@
+ ncbi_cv_prog_distcc_servers=yes ;;
+ esac
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_servers" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_distcc_servers" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_servers" >&5
++echo "${ECHO_T}$ncbi_cv_prog_distcc_servers" >&6; }
+ if test "$ncbi_cv_prog_distcc_servers" = no; then
+ $as_unset DISTCC || test "${DISTCC+set}" != set || { DISTCC=; export DISTCC; }
+ fi
+ if test -n "$DISTCC" ; then
+- echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CC" >&5
+-echo $ECHO_N "checking whether $DISTCC is compatible with $CC... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CC" >&5
++echo $ECHO_N "checking whether $DISTCC is compatible with $CC... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_distcc_vs_cc+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6677,8 +8014,8 @@
+ ncbi_cv_prog_distcc_vs_cc=no
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cc" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cc" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cc" >&5
++echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cc" >&6; }
+ if test "$ncbi_cv_prog_distcc_vs_cc" = yes; then
+ CC_WRAPPER="$DISTCC $CC_WRAPPER"
+ else
+@@ -6686,8 +8023,8 @@
+ fi
+ fi
+ if test -n "$DISTCC" ; then
+- echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CXX" >&5
+-echo $ECHO_N "checking whether $DISTCC is compatible with $CXX... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CXX" >&5
++echo $ECHO_N "checking whether $DISTCC is compatible with $CXX... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_distcc_vs_cxx+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6698,8 +8035,8 @@
+ ncbi_cv_prog_distcc_vs_cxx=no
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cxx" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cxx" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cxx" >&5
++echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cxx" >&6; }
+ if test "$ncbi_cv_prog_distcc_vs_cxx" = yes; then
+ CXX_WRAPPER="$DISTCC $CXX_WRAPPER"
+ else
+@@ -6725,8 +8062,8 @@
+ if test "$with_ccache" != "no"; then
+ # Extract the first word of "ccache", so it can be a program name with args.
+ set dummy ccache; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_CCACHE+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6739,25 +8076,27 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CCACHE="ccache"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ CCACHE=$ac_cv_prog_CCACHE
+ if test -n "$CCACHE"; then
+- echo "$as_me:$LINENO: result: $CCACHE" >&5
+-echo "${ECHO_T}$CCACHE" >&6
++ { echo "$as_me:$LINENO: result: $CCACHE" >&5
++echo "${ECHO_T}$CCACHE" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -n "$CCACHE" ; then
+ if test -n "$CC_WRAPPER"; then
+ CC_WRAPPER="CCACHE_PREFIX=$CC_WRAPPER $CCACHE"
+@@ -6778,8 +8117,8 @@
+ # Note the path, since syntax is version-specific....
+ # Extract the first word of "tail", so it can be a program name with args.
+ set dummy tail; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_TAIL+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6794,43 +8133,44 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_TAIL="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ TAIL=$ac_cv_path_TAIL
+-
+ if test -n "$TAIL"; then
+- echo "$as_me:$LINENO: result: $TAIL" >&5
+-echo "${ECHO_T}$TAIL" >&6
++ { echo "$as_me:$LINENO: result: $TAIL" >&5
++echo "${ECHO_T}$TAIL" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
+-echo "$as_me:$LINENO: checking whether $TAIL accepts modern syntax (-n N)" >&5
+-echo $ECHO_N "checking whether $TAIL accepts modern syntax (-n N)... $ECHO_C" >&6
++
++{ echo "$as_me:$LINENO: checking whether $TAIL accepts modern syntax (-n N)" >&5
++echo $ECHO_N "checking whether $TAIL accepts modern syntax (-n N)... $ECHO_C" >&6; }
+ if $TAIL -n 1 config.log >/dev/null 2>&1; then
+ TAIL_N="$TAIL -n "
+- echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
+ else
+ TAIL_N="$TAIL -"
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
+ # Extract the first word of "touch", so it can be a program name with args.
+ set dummy touch; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_TOUCH+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6846,44 +8186,192 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_TOUCH="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ TOUCH=$ac_cv_path_TOUCH
+-
+ if test -n "$TOUCH"; then
+- echo "$as_me:$LINENO: result: $TOUCH" >&5
+-echo "${ECHO_T}$TOUCH" >&6
++ { echo "$as_me:$LINENO: result: $TOUCH" >&5
++echo "${ECHO_T}$TOUCH" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++fi
++
++
++{ echo "$as_me:$LINENO: checking for grep that handles long lines and -e" >&5
++echo $ECHO_N "checking for grep that handles long lines and -e... $ECHO_C" >&6; }
++if test "${ac_cv_path_GREP+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ # Extract the first word of "grep ggrep" to use in msg output
++if test -z "$GREP"; then
++set dummy grep ggrep; ac_prog_name=$2
++if test "${ac_cv_path_GREP+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_path_GREP_found=false
++# Loop through the user's path and test for each of PROGNAME-LIST
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_prog in grep ggrep; do
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext"
++ { test -f "$ac_path_GREP" && $as_executable_p "$ac_path_GREP"; } || continue
++ # Check for GNU ac_path_GREP and select it if it is found.
++ # Check for GNU $ac_path_GREP
++case `"$ac_path_GREP" --version 2>&1` in
++*GNU*)
++ ac_cv_path_GREP="$ac_path_GREP" ac_path_GREP_found=:;;
++*)
++ ac_count=0
++ echo $ECHO_N "0123456789$ECHO_C" >"conftest.in"
++ while :
++ do
++ cat "conftest.in" "conftest.in" >"conftest.tmp"
++ mv "conftest.tmp" "conftest.in"
++ cp "conftest.in" "conftest.nl"
++ echo 'GREP' >> "conftest.nl"
++ "$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break
++ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
++ ac_count=`expr $ac_count + 1`
++ if test $ac_count -gt ${ac_path_GREP_max-0}; then
++ # Best one so far, save it but keep looking for a better one
++ ac_cv_path_GREP="$ac_path_GREP"
++ ac_path_GREP_max=$ac_count
++ fi
++ # 10*(2^10) chars as input seems more than enough
++ test $ac_count -gt 10 && break
++ done
++ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
++esac
++
++
++ $ac_path_GREP_found && break 3
++ done
++done
++
++done
++IFS=$as_save_IFS
++
++
++fi
++
++GREP="$ac_cv_path_GREP"
++if test -z "$GREP"; then
++ { { echo "$as_me:$LINENO: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
++echo "$as_me: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
++ { (exit 1); exit 1; }; }
++fi
++
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ ac_cv_path_GREP=$GREP
++fi
++
++
+ fi
++{ echo "$as_me:$LINENO: result: $ac_cv_path_GREP" >&5
++echo "${ECHO_T}$ac_cv_path_GREP" >&6; }
++ GREP="$ac_cv_path_GREP"
+
+-echo "$as_me:$LINENO: checking for egrep" >&5
+-echo $ECHO_N "checking for egrep... $ECHO_C" >&6
+-if test "${ac_cv_prog_egrep+set}" = set; then
++
++{ echo "$as_me:$LINENO: checking for egrep" >&5
++echo $ECHO_N "checking for egrep... $ECHO_C" >&6; }
++if test "${ac_cv_path_EGREP+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ if echo a | $GREP -E '(a|b)' >/dev/null 2>&1
++ then ac_cv_path_EGREP="$GREP -E"
++ else
++ # Extract the first word of "egrep" to use in msg output
++if test -z "$EGREP"; then
++set dummy egrep; ac_prog_name=$2
++if test "${ac_cv_path_EGREP+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- if echo a | (grep -E '(a|b)') >/dev/null 2>&1
+- then ac_cv_prog_egrep='grep -E'
+- else ac_cv_prog_egrep='egrep'
++ ac_path_EGREP_found=false
++# Loop through the user's path and test for each of PROGNAME-LIST
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_prog in egrep; do
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext"
++ { test -f "$ac_path_EGREP" && $as_executable_p "$ac_path_EGREP"; } || continue
++ # Check for GNU ac_path_EGREP and select it if it is found.
++ # Check for GNU $ac_path_EGREP
++case `"$ac_path_EGREP" --version 2>&1` in
++*GNU*)
++ ac_cv_path_EGREP="$ac_path_EGREP" ac_path_EGREP_found=:;;
++*)
++ ac_count=0
++ echo $ECHO_N "0123456789$ECHO_C" >"conftest.in"
++ while :
++ do
++ cat "conftest.in" "conftest.in" >"conftest.tmp"
++ mv "conftest.tmp" "conftest.in"
++ cp "conftest.in" "conftest.nl"
++ echo 'EGREP' >> "conftest.nl"
++ "$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break
++ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
++ ac_count=`expr $ac_count + 1`
++ if test $ac_count -gt ${ac_path_EGREP_max-0}; then
++ # Best one so far, save it but keep looking for a better one
++ ac_cv_path_EGREP="$ac_path_EGREP"
++ ac_path_EGREP_max=$ac_count
++ fi
++ # 10*(2^10) chars as input seems more than enough
++ test $ac_count -gt 10 && break
++ done
++ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
++esac
++
++
++ $ac_path_EGREP_found && break 3
++ done
++done
++
++done
++IFS=$as_save_IFS
++
++
++fi
++
++EGREP="$ac_cv_path_EGREP"
++if test -z "$EGREP"; then
++ { { echo "$as_me:$LINENO: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
++echo "$as_me: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
++ { (exit 1); exit 1; }; }
++fi
++
++else
++ ac_cv_path_EGREP=$EGREP
++fi
++
++
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_prog_egrep" >&5
+-echo "${ECHO_T}$ac_cv_prog_egrep" >&6
+- EGREP=$ac_cv_prog_egrep
++{ echo "$as_me:$LINENO: result: $ac_cv_path_EGREP" >&5
++echo "${ECHO_T}$ac_cv_path_EGREP" >&6; }
++ EGREP="$ac_cv_path_EGREP"
+
+
+-echo "$as_me:$LINENO: checking how to run $EGREP quietly" >&5
+-echo $ECHO_N "checking how to run $EGREP quietly... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking how to run $EGREP quietly" >&5
++echo $ECHO_N "checking how to run $EGREP quietly... $ECHO_C" >&6; }
+ if test -z "`echo foo | $EGREP -q fo+ 2>>config.log || echo $?`"; then
+ EGREP_Q="$EGREP -q"
+ elif test -z "`echo foo | $EGREP -s fo+ 2>>config.log || echo $?`"; then
+@@ -6891,13 +8379,13 @@
+ else
+ EGREP_Q=">/dev/null $EGREP"
+ fi
+-echo "$as_me:$LINENO: result: $EGREP_Q" >&5
+-echo "${ECHO_T}$EGREP_Q" >&6
++{ echo "$as_me:$LINENO: result: $EGREP_Q" >&5
++echo "${ECHO_T}$EGREP_Q" >&6; }
+
+ # Extract the first word of "valgrind", so it can be a program name with args.
+ set dummy valgrind; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_prog_VALGRIND_PATH+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -6910,26 +8398,80 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_VALGRIND_PATH="valgrind"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ fi
+ fi
+ VALGRIND_PATH=$ac_cv_prog_VALGRIND_PATH
+ if test -n "$VALGRIND_PATH"; then
+- echo "$as_me:$LINENO: result: $VALGRIND_PATH" >&5
+-echo "${ECHO_T}$VALGRIND_PATH" >&6
++ { echo "$as_me:$LINENO: result: $VALGRIND_PATH" >&5
++echo "${ECHO_T}$VALGRIND_PATH" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++fi
++
++
++
++# Extract the first word of "ldd", so it can be a program name with args.
++set dummy ldd; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_LDD+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ case $LDD in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_LDD="$LDD" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_LDD="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++done
++IFS=$as_save_IFS
++
++ ;;
++esac
++fi
++LDD=$ac_cv_path_LDD
++if test -n "$LDD"; then
++ { echo "$as_me:$LINENO: result: $LDD" >&5
++echo "${ECHO_T}$LDD" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
+
++if test -n "$LDD"; then
++ { echo "$as_me:$LINENO: checking whether $LDD accepts -r" >&5
++echo $ECHO_N "checking whether $LDD accepts -r... $ECHO_C" >&6; }
++ if $LDD -r /bin/ls >/dev/null 2>&1; then
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
++ LDD_R="$LDD -r"
++ else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++ fi
++fi
+
+ #### Check if "${build_root}" is defined; provide a default one
+ if test -n "${with_build_root}" ; then
+@@ -7014,22 +8556,14 @@
+ fi
+
+
+-### Should go before any test compiler runs
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define _GNU_SOURCE 1
+-_ACEOF
+-
+-
+-
+ #### Determine whether this is implicitly a 64-bit platform
+-ac_ext=cc
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+-echo "$as_me:$LINENO: checking how to run the C++ preprocessor" >&5
+-echo $ECHO_N "checking how to run the C++ preprocessor... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking how to run the C++ preprocessor" >&5
++echo $ECHO_N "checking how to run the C++ preprocessor... $ECHO_C" >&6; }
+ if test -z "$CXXCPP"; then
+ if test "${ac_cv_prog_CXXCPP+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+@@ -7059,8 +8593,13 @@
+ #endif
+ Syntax error
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -7085,9 +8624,10 @@
+ # Broken: fails on valid input.
+ continue
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+- # OK, works on sane cases. Now check whether non-existent headers
++ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -7097,8 +8637,13 @@
+ /* end confdefs.h. */
+ #include <ac_nonexistent.h>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -7125,6 +8670,7 @@
+ ac_preproc_ok=:
+ break
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+ done
+@@ -7142,8 +8688,8 @@
+ else
+ ac_cv_prog_CXXCPP=$CXXCPP
+ fi
+-echo "$as_me:$LINENO: result: $CXXCPP" >&5
+-echo "${ECHO_T}$CXXCPP" >&6
++{ echo "$as_me:$LINENO: result: $CXXCPP" >&5
++echo "${ECHO_T}$CXXCPP" >&6; }
+ ac_preproc_ok=false
+ for ac_cxx_preproc_warn_flag in '' yes
+ do
+@@ -7166,8 +8712,13 @@
+ #endif
+ Syntax error
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -7192,9 +8743,10 @@
+ # Broken: fails on valid input.
+ continue
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+- # OK, works on sane cases. Now check whether non-existent headers
++ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -7204,8 +8756,13 @@
+ /* end confdefs.h. */
+ #include <ac_nonexistent.h>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -7232,6 +8789,7 @@
+ ac_preproc_ok=:
+ break
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+ done
+@@ -7247,15 +8805,15 @@
+ { (exit 1); exit 1; }; }
+ fi
+
+-ac_ext=cc
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+-echo "$as_me:$LINENO: checking for ANSI C header files" >&5
+-echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for ANSI C header files" >&5
++echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6; }
+ if test "${ac_cv_header_stdc+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -7279,24 +8837,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7307,7 +8877,8 @@
+
+ ac_cv_header_stdc=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ if test $ac_cv_header_stdc = yes; then
+ # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
+@@ -7363,6 +8934,7 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ #include <ctype.h>
++#include <stdlib.h>
+ #if ((' ' & 0x0FF) == 0x020)
+ # define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
+ # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
+@@ -7382,18 +8954,27 @@
+ for (i = 0; i < 256; i++)
+ if (XOR (islower (i), ISLOWER (i))
+ || toupper (i) != TOUPPER (i))
+- exit(2);
+- exit (0);
++ return 2;
++ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7406,12 +8987,14 @@
+ ( exit $ac_status )
+ ac_cv_header_stdc=no
+ fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
++
++
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
+-echo "${ECHO_T}$ac_cv_header_stdc" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
++echo "${ECHO_T}$ac_cv_header_stdc" >&6; }
+ if test $ac_cv_header_stdc = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -7434,9 +9017,9 @@
+ inttypes.h stdint.h unistd.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -7450,24 +9033,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7478,10 +9073,12 @@
+
+ eval "$as_ac_Header=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
+@@ -7492,8 +9089,8 @@
+ done
+
+
+-echo "$as_me:$LINENO: checking for size_t" >&5
+-echo $ECHO_N "checking for size_t... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for size_t" >&5
++echo $ECHO_N "checking for size_t... $ECHO_C" >&6; }
+ if test "${ac_cv_type_size_t+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -7504,36 +9101,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef size_t ac__type_new_;
+ int
+ main ()
+ {
+-if ((size_t *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (size_t))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7544,23 +9154,24 @@
+
+ ac_cv_type_size_t=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
+-echo "${ECHO_T}$ac_cv_type_size_t" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
++echo "${ECHO_T}$ac_cv_type_size_t" >&6; }
+ if test $ac_cv_type_size_t = yes; then
+ :
+ else
+
+ cat >>confdefs.h <<_ACEOF
+-#define size_t unsigned
++#define size_t unsigned int
+ _ACEOF
+
+ fi
+
+ if test "${with_universal-no}" = "no"; then
+- echo "$as_me:$LINENO: checking for size_t" >&5
+-echo $ECHO_N "checking for size_t... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for size_t" >&5
++echo $ECHO_N "checking for size_t... $ECHO_C" >&6; }
+ if test "${ac_cv_type_size_t+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -7571,36 +9182,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef size_t ac__type_new_;
+ int
+ main ()
+ {
+-if ((size_t *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (size_t))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7611,18 +9235,19 @@
+
+ ac_cv_type_size_t=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
+-echo "${ECHO_T}$ac_cv_type_size_t" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
++echo "${ECHO_T}$ac_cv_type_size_t" >&6; }
+
+-echo "$as_me:$LINENO: checking size of size_t" >&5
+-echo $ECHO_N "checking size of size_t... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of size_t" >&5
++echo $ECHO_N "checking size of size_t... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_size_t+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_size_t" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -7635,10 +9260,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef size_t ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (size_t))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -7646,24 +9272,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7676,10 +9314,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef size_t ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (size_t))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -7687,24 +9326,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7720,7 +9371,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -7733,10 +9385,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef size_t ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (size_t))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -7744,24 +9397,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7774,10 +9439,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef size_t ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (size_t))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -7785,24 +9451,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7818,7 +9496,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -7826,9 +9505,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -7839,10 +9520,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef size_t ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (size_t))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -7850,24 +9532,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7878,24 +9572,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_size_t=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (size_t), 77
++echo "$as_me: error: cannot compute sizeof (size_t)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -7903,8 +9591,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (size_t)); }
+-unsigned long ulongval () { return (long) (sizeof (size_t)); }
++ typedef size_t ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -7913,35 +9602,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (size_t))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (size_t))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (size_t))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -7952,22 +9650,21 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (size_t), 77
++echo "$as_me: error: cannot compute sizeof (size_t)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_size_t=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_size_t" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_size_t" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_size_t" >&5
++echo "${ECHO_T}$ac_cv_sizeof_size_t" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_SIZE_T $ac_cv_sizeof_size_t
+ _ACEOF
+@@ -8006,8 +9703,8 @@
+ fi
+ # Extract the first word of "tcheck_cl", so it can be a program name with args.
+ set dummy tcheck_cl; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_TCHECK_CL+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -8023,27 +9720,28 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_TCHECK_CL="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ TCHECK_CL=$ac_cv_path_TCHECK_CL
+-
+ if test -n "$TCHECK_CL"; then
+- echo "$as_me:$LINENO: result: $TCHECK_CL" >&5
+-echo "${ECHO_T}$TCHECK_CL" >&6
++ { echo "$as_me:$LINENO: result: $TCHECK_CL" >&5
++echo "${ECHO_T}$TCHECK_CL" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -n "$TCHECK_CL"; then
+ CFLAGS="$CFLAGS -tcheck -O0"
+ CXXFLAGS="$CXXFLAGS -tcheck -O0"
+@@ -8098,8 +9796,8 @@
+ #### Try to find a version of pwd that yields /net paths.
+ # Extract the first word of "amq", so it can be a program name with args.
+ set dummy amq; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_AMQ+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -8115,31 +9813,32 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_AMQ="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ AMQ=$ac_cv_path_AMQ
+-
+ if test -n "$AMQ"; then
+- echo "$as_me:$LINENO: result: $AMQ" >&5
+-echo "${ECHO_T}$AMQ" >&6
++ { echo "$as_me:$LINENO: result: $AMQ" >&5
++echo "${ECHO_T}$AMQ" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ case "$AMQ" in
+ */amq)
+- echo "$as_me:$LINENO: checking whether $AMQ -w works" >&5
+-echo $ECHO_N "checking whether $AMQ -w works... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether $AMQ -w works" >&5
++echo $ECHO_N "checking whether $AMQ -w works... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_amq_w+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -8149,8 +9848,8 @@
+ ncbi_cv_prog_amq_w=no
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_amq_w" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_amq_w" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_amq_w" >&5
++echo "${ECHO_T}$ncbi_cv_prog_amq_w" >&6; }
+ if test "$ncbi_cv_prog_amq_w" = yes; then
+ smart_pwd="$AMQ -w"
+ else
+@@ -8261,7 +9960,7 @@
+ fi
+ ;;
+ *:ICC )
+- runpath="$runpath -Xlinker -rpath-link -Xlinker \$(libdir)"
++ runpath="$runpath -Wl,-rpath-link,\$(libdir)"
+ ;;
+ esac
+ elif test "$with_runpath" = "yes" -o "$with_dll" != "no" ; then
+@@ -8338,8 +10037,8 @@
+ FORBID_UNDEF='-Wl,-error_unresolved'
+ ;;
+ esac
+- echo "$as_me:$LINENO: checking whether $CC supports -Wl,--no-allow-shlib-undefined" >&5
+-echo $ECHO_N "checking whether $CC supports -Wl,--no-allow-shlib-undefined... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether $CC supports -Wl,--no-allow-shlib-undefined" >&5
++echo $ECHO_N "checking whether $CC supports -Wl,--no-allow-shlib-undefined... $ECHO_C" >&6; }
+ if test "${ncbi_cv_prog_cc_wl_no_asu+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -8361,24 +10060,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -8389,12 +10100,13 @@
+
+ ncbi_cv_prog_cc_wl_no_asu=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LDFLAGS=$orig_LDFLAGS
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_no_asu" >&5
+-echo "${ECHO_T}$ncbi_cv_prog_cc_wl_no_asu" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_no_asu" >&5
++echo "${ECHO_T}$ncbi_cv_prog_cc_wl_no_asu" >&6; }
+ if test "$ncbi_cv_prog_cc_wl_no_asu" = yes; then
+ FORBID_UNDEF="$FORBID_UNDEF -Wl,--no-allow-shlib-undefined"
+ fi
+@@ -8481,8 +10193,8 @@
+ ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ ac_compiler_gnu=$ac_cv_c_compiler_gnu
+-echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
+-echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
++echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6; }
+ # On Suns, sometimes $CPP names a directory.
+ if test -n "$CPP" && test -d "$CPP"; then
+ CPP=
+@@ -8516,8 +10228,13 @@
+ #endif
+ Syntax error
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -8542,9 +10259,10 @@
+ # Broken: fails on valid input.
+ continue
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+- # OK, works on sane cases. Now check whether non-existent headers
++ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -8554,8 +10272,13 @@
+ /* end confdefs.h. */
+ #include <ac_nonexistent.h>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -8582,6 +10305,7 @@
+ ac_preproc_ok=:
+ break
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+ done
+@@ -8599,8 +10323,8 @@
+ else
+ ac_cv_prog_CPP=$CPP
+ fi
+-echo "$as_me:$LINENO: result: $CPP" >&5
+-echo "${ECHO_T}$CPP" >&6
++{ echo "$as_me:$LINENO: result: $CPP" >&5
++echo "${ECHO_T}$CPP" >&6; }
+ ac_preproc_ok=false
+ for ac_c_preproc_warn_flag in '' yes
+ do
+@@ -8623,8 +10347,13 @@
+ #endif
+ Syntax error
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -8649,9 +10378,10 @@
+ # Broken: fails on valid input.
+ continue
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+- # OK, works on sane cases. Now check whether non-existent headers
++ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -8661,8 +10391,13 @@
+ /* end confdefs.h. */
+ #include <ac_nonexistent.h>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -8689,6 +10424,7 @@
+ ac_preproc_ok=:
+ break
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+
+ done
+@@ -8704,7 +10440,7 @@
+ { (exit 1); exit 1; }; }
+ fi
+
+-ac_ext=cc
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+@@ -8898,7 +10634,7 @@
+ echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
+ * )
+ echo "Do you want to re-configure in \"${builddir}\"? [y/N]"
+- read answer
++ read answer <& 7
+ case "$answer" in
+ [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
+ echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
+@@ -8939,8 +10675,8 @@
+ BINCOPY="cp -p"
+ MAC_BINCOPY="/Developer/Tools/CpMac -p"
+ if test "$with_bincopy" != "yes"; then
+- echo "$as_me:$LINENO: checking whether cross-directory hard links work" >&5
+-echo $ECHO_N "checking whether cross-directory hard links work... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether cross-directory hard links work" >&5
++echo $ECHO_N "checking whether cross-directory hard links work... $ECHO_C" >&6; }
+ if test "${ncbi_cv_sys_xdir_ln+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -8953,8 +10689,8 @@
+ fi
+ rm -rf conftestdir conftestfile
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_sys_xdir_ln" >&5
+-echo "${ECHO_T}$ncbi_cv_sys_xdir_ln" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_xdir_ln" >&5
++echo "${ECHO_T}$ncbi_cv_sys_xdir_ln" >&6; }
+ if test "$ncbi_cv_sys_xdir_ln" = "yes"; then
+ BINCOPY="ln -f"
+ MAC_BINCOPY="\$(top_srcdir)/scripts/common/impl/ln_mac.sh"
+@@ -8999,15 +10735,30 @@
+ dbgrx1="$wsrx-g[^cx$wschars]*$wsrx"
+ dbgrx2="$wsrx-gx*coff[0-9+]*$wsrx"
+ optrx="$wsrx-x*O[0-9s]*$wsrx"
++ NDEB_CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ NDEB_CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ NDEB_LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+ if test "$with_symbols" = "no" ; then
+- CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+- CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
+- LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
++ CFLAGS=$NDEB_CFLAGS
++ CXXFLAGS=$NDEB_CXXFLAGS
++ LDFLAGS=$NDEB_LDFLAGS
+ else
+ echo " $CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || CFLAGS="$CFLAGS -g"
+ echo " $CXXFLAGS "| $EGREP_Q "$dbgrx1|$dbgrx2" || CXXFLAGS="$CXXFLAGS -g"
+ echo " $LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || LDFLAGS="$LDFLAGS -g"
+ STRIP="@:"
++ case "$compiler:$compiler_version" in
++ GCC:4[89]? | GCC:[5-9]? | GCC:???? )
++ # GCC 4.8 defaults to DWARF 4, which Totalview for one
++ # can't handle; roll back to version 3 by default.
++ echo " $USER_CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ CFLAGS="$NDEB_CFLAGS -gdwarf-3"
++ echo " $USER_CXXFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ CXXFLAGS="$NDEB_CXXFLAGS -gdwarf-3"
++ echo " $USER_LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
++ LDFLAGS="$NDEB_LDFLAGS -gdwarf-3"
++ ;;
++ esac
+ fi
+
+ NOPT_CFLAGS=` echo " $CFLAGS " | sed "s/$optrx/ /g"`
+@@ -9056,18 +10807,19 @@
+ for ac_header in iostream iostream.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9078,24 +10830,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -9106,13 +10870,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9121,8 +10886,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -9146,9 +10916,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -9172,25 +10943,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -9207,18 +10977,19 @@
+ for ac_header in fstream fstream.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9229,24 +11000,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -9257,13 +11040,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9272,8 +11056,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -9297,9 +11086,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -9323,25 +11113,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -9359,18 +11148,19 @@
+ for ac_header in strstream strstream.h strstrea.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9381,24 +11171,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -9409,13 +11211,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9424,8 +11227,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -9449,9 +11257,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -9475,25 +11284,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -9511,18 +11319,19 @@
+ for ac_header in inttypes.h limits
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9533,24 +11342,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -9561,13 +11382,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9576,8 +11398,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -9601,9 +11428,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -9627,25 +11455,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -9663,18 +11490,19 @@
+ for ac_header in unistd.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9685,24 +11513,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -9713,13 +11553,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9728,8 +11569,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -9753,9 +11599,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -9779,25 +11626,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -9813,18 +11659,19 @@
+ for ac_header in windows.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9835,24 +11682,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -9863,13 +11722,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -9878,8 +11738,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -9903,9 +11768,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -9929,25 +11795,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -10078,8 +11943,8 @@
+ esac
+
+ # AC_CHECK_TYPES is insufficient, as linking may still fail :-/
+-echo "$as_me:$LINENO: checking for wstring" >&5
+-echo $ECHO_N "checking for wstring... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for wstring" >&5
++echo $ECHO_N "checking for wstring... $ECHO_C" >&6; }
+ if test "${ac_cv_type_wstring_linkable+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -10100,24 +11965,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10128,11 +12005,12 @@
+
+ ac_cv_type_wstring_linkable=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_wstring_linkable" >&5
+-echo "${ECHO_T}$ac_cv_type_wstring_linkable" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_wstring_linkable" >&5
++echo "${ECHO_T}$ac_cv_type_wstring_linkable" >&6; }
+ if test "$ac_cv_type_wstring_linkable" = "yes"; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -10141,8 +12019,8 @@
+
+ fi
+
+-echo "$as_me:$LINENO: checking for socklen_t" >&5
+-echo $ECHO_N "checking for socklen_t... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for socklen_t" >&5
++echo $ECHO_N "checking for socklen_t... $ECHO_C" >&6; }
+ if test "${ac_cv_type_socklen_t+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -10155,36 +12033,49 @@
+ #include <sys/types.h>
+ #include <sys/socket.h>
+
++typedef socklen_t ac__type_new_;
+ int
+ main ()
+ {
+-if ((socklen_t *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (socklen_t))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10195,10 +12086,11 @@
+
+ ac_cv_type_socklen_t=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_socklen_t" >&5
+-echo "${ECHO_T}$ac_cv_type_socklen_t" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_socklen_t" >&5
++echo "${ECHO_T}$ac_cv_type_socklen_t" >&6; }
+ if test $ac_cv_type_socklen_t = yes; then
+
+ cat >>confdefs.h <<_ACEOF
+@@ -10222,18 +12114,19 @@
+ sys/sockio.h sys/statvfs.h sys/sysinfo.h sys/vfs.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -10244,24 +12137,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10272,13 +12177,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -10287,8 +12193,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -10312,9 +12223,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -10338,25 +12250,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -10373,18 +12284,19 @@
+ for ac_header in winternl.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -10395,24 +12307,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10423,13 +12347,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -10438,8 +12363,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -10463,9 +12393,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -10489,25 +12420,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -10539,18 +12469,19 @@
+ sys/ioctl.h sys/select.h sys/socket.h sys/time.h wchar.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
+- echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
++ { echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking $ac_header usability" >&5
+-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
++echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -10561,24 +12492,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10589,13 +12532,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking $ac_header presence" >&5
+-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
++echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -10604,8 +12548,13 @@
+ /* end confdefs.h. */
+ #include <$ac_header>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -10629,9 +12578,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -10655,25 +12605,24 @@
+ echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ eval "$as_ac_Header=\$ac_header_preproc"
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+
+ fi
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+@@ -10685,8 +12634,8 @@
+
+ done
+
+-echo "$as_me:$LINENO: checking whether time.h and sys/time.h may both be included" >&5
+-echo $ECHO_N "checking whether time.h and sys/time.h may both be included... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether time.h and sys/time.h may both be included" >&5
++echo $ECHO_N "checking whether time.h and sys/time.h may both be included... $ECHO_C" >&6; }
+ if test "${ac_cv_header_time+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -10710,24 +12659,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10738,10 +12699,11 @@
+
+ ac_cv_header_time=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_header_time" >&5
+-echo "${ECHO_T}$ac_cv_header_time" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_header_time" >&5
++echo "${ECHO_T}$ac_cv_header_time" >&6; }
+ if test $ac_cv_header_time = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -10753,8 +12715,8 @@
+
+ ## gethostbyname_r() -- 2 different variants: 5-arg (Solaris), 6-arg (Linux).
+
+-echo "$as_me:$LINENO: checking for gethostbyname_r" >&5
+-echo $ECHO_N "checking for gethostbyname_r... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for gethostbyname_r" >&5
++echo $ECHO_N "checking for gethostbyname_r... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_gethostbyname_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -10781,24 +12743,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10810,8 +12784,10 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ if test "$ncbi_cv_func_gethostbyname_r" = "no" ; then
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -10835,24 +12811,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10864,12 +12852,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyname_r" >&5
+-echo "${ECHO_T}$ncbi_cv_func_gethostbyname_r" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyname_r" >&5
++echo "${ECHO_T}$ncbi_cv_func_gethostbyname_r" >&6; }
+
+ if test "$ncbi_cv_func_gethostbyname_r" != "no" ; then
+
+@@ -10882,8 +12872,8 @@
+
+ ## gethostbyaddr_r() -- 2 different variants: 7-arg (Solaris), 8-arg (Linux).
+
+-echo "$as_me:$LINENO: checking for gethostbyaddr_r" >&5
+-echo $ECHO_N "checking for gethostbyaddr_r... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for gethostbyaddr_r" >&5
++echo $ECHO_N "checking for gethostbyaddr_r... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_gethostbyaddr_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -10916,24 +12906,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -10945,8 +12947,10 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ if test "$ncbi_cv_func_gethostbyaddr_r" = "no" ; then
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -10976,24 +12980,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11005,12 +13021,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyaddr_r" >&5
+-echo "${ECHO_T}$ncbi_cv_func_gethostbyaddr_r" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyaddr_r" >&5
++echo "${ECHO_T}$ncbi_cv_func_gethostbyaddr_r" >&6; }
+
+ if test "$ncbi_cv_func_gethostbyaddr_r" != "no" ; then
+
+@@ -11023,8 +13041,8 @@
+
+ ## getservbyname_r() -- 2 different variants: 5-arg (Solaris), 6-arg (Linux).
+
+-echo "$as_me:$LINENO: checking for getservbyname_r" >&5
+-echo $ECHO_N "checking for getservbyname_r... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for getservbyname_r" >&5
++echo $ECHO_N "checking for getservbyname_r... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_getservbyname_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -11051,24 +13069,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11080,8 +13110,10 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ if test "$ncbi_cv_func_getservbyname_r" = "no" ; then
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -11105,24 +13137,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11134,12 +13178,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_getservbyname_r" >&5
+-echo "${ECHO_T}$ncbi_cv_func_getservbyname_r" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_getservbyname_r" >&5
++echo "${ECHO_T}$ncbi_cv_func_getservbyname_r" >&6; }
+
+ if test "$ncbi_cv_func_getservbyname_r" != "no" ; then
+
+@@ -11152,8 +13198,8 @@
+ ## getpwuid_r() -- 2 major variants: 4-arg, 5-arg (POSIX).
+ ## (Alternate 4-arg interface ignored due to rarity.)
+
+-echo "$as_me:$LINENO: checking for getpwuid_r" >&5
+-echo $ECHO_N "checking for getpwuid_r... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for getpwuid_r" >&5
++echo $ECHO_N "checking for getpwuid_r... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_getpwuid_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -11178,24 +13224,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11204,8 +13262,10 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ if test "$ncbi_cv_func_getpwuid_r" = "no" ; then
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -11227,24 +13287,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11253,12 +13325,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_getpwuid_r" >&5
+-echo "${ECHO_T}$ncbi_cv_func_getpwuid_r" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_getpwuid_r" >&5
++echo "${ECHO_T}$ncbi_cv_func_getpwuid_r" >&6; }
+
+ if test "$ncbi_cv_func_getpwuid_r" != "no" ; then
+
+@@ -11270,8 +13344,8 @@
+
+ # Perform a full-fledged check in C++ to be sure of an actual declaration.
+ # Accommodate the old Solaris interface that returns char* rather than int. :-/
+-echo "$as_me:$LINENO: checking for getlogin_r" >&5
+-echo $ECHO_N "checking for getlogin_r... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for getlogin_r" >&5
++echo $ECHO_N "checking for getlogin_r... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_getlogin_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -11292,24 +13366,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11320,10 +13406,11 @@
+
+ ncbi_cv_func_getlogin_r=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_getlogin_r" >&5
+-echo "${ECHO_T}$ncbi_cv_func_getlogin_r" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_getlogin_r" >&5
++echo "${ECHO_T}$ncbi_cv_func_getlogin_r" >&6; }
+ if test $ncbi_cv_func_getlogin_r = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -11342,13 +13429,12 @@
+
+
+
+-
+ for ac_func in localtime_r pthread_setconcurrency pthread_atfork
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -11374,53 +13460,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11431,11 +13523,13 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+@@ -11445,8 +13539,8 @@
+ done
+
+ if test "$ac_cv_func_localtime_r" = "yes" ; then
+- echo "$as_me:$LINENO: checking return type of localtime_r" >&5
+-echo $ECHO_N "checking return type of localtime_r... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking return type of localtime_r" >&5
++echo $ECHO_N "checking return type of localtime_r... $ECHO_C" >&6; }
+ if test "${ac_cv_func_which_localtime_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -11469,24 +13563,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11497,10 +13603,11 @@
+
+ ac_cv_func_which_localtime_r=int
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func_which_localtime_r" >&5
+-echo "${ECHO_T}$ac_cv_func_which_localtime_r" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_func_which_localtime_r" >&5
++echo "${ECHO_T}$ac_cv_func_which_localtime_r" >&6; }
+ if test $ac_cv_func_which_localtime_r = struct; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -11516,8 +13623,8 @@
+ fi
+ fi
+
+-echo "$as_me:$LINENO: checking whether pthread mutexes are available" >&5
+-echo $ECHO_N "checking whether pthread mutexes are available... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether pthread mutexes are available" >&5
++echo $ECHO_N "checking whether pthread mutexes are available... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_pthread_mutex+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -11538,24 +13645,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11566,11 +13685,12 @@
+
+ ncbi_cv_func_pthread_mutex=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_pthread_mutex" >&5
+-echo "${ECHO_T}$ncbi_cv_func_pthread_mutex" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_pthread_mutex" >&5
++echo "${ECHO_T}$ncbi_cv_func_pthread_mutex" >&6; }
+ if test $ncbi_cv_func_pthread_mutex=yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -11586,9 +13706,9 @@
+ for ac_func in vprintf
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -11614,53 +13734,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11671,18 +13797,20 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+ _ACEOF
+
+-echo "$as_me:$LINENO: checking for _doprnt" >&5
+-echo $ECHO_N "checking for _doprnt... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for _doprnt" >&5
++echo $ECHO_N "checking for _doprnt... $ECHO_C" >&6; }
+ if test "${ac_cv_func__doprnt+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -11709,53 +13837,59 @@
+
+ #undef _doprnt
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char _doprnt ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub__doprnt) || defined (__stub____doprnt)
++#if defined __stub__doprnt || defined __stub____doprnt
+ choke me
+-#else
+-char (*f) () = _doprnt;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != _doprnt;
++return _doprnt ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11766,11 +13900,12 @@
+
+ ac_cv_func__doprnt=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func__doprnt" >&5
+-echo "${ECHO_T}$ac_cv_func__doprnt" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_func__doprnt" >&5
++echo "${ECHO_T}$ac_cv_func__doprnt" >&6; }
+ if test $ac_cv_func__doprnt = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -11816,17 +13951,18 @@
+
+
+
+-for ac_func in euidaccess atoll basename lchown fseeko getpagesize \
+- getpass getpassphrase getpwuid getrusage gettimeofday \
+- getuid memrchr readpassphrase readv usleep \
++
++for ac_func in euidaccess atoll basename lchown fseeko getgrouplist \
++ getpagesize getpass getpassphrase getpwuid getrusage \
++ gettimeofday getuid memrchr readpassphrase readv usleep \
+ asprintf vasprintf vsnprintf select statfs statvfs \
+ strcasecmp strlcat strlcpy strdup strndup strtok_r \
+ sysmp timegm utimes lutimes writev
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -11852,53 +13988,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -11909,11 +14051,13 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+@@ -11922,15 +14066,15 @@
+ fi
+ done
+
+-ac_ext=cc
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+-echo "$as_me:$LINENO: checking return type of signal handlers" >&5
+-echo $ECHO_N "checking return type of signal handlers... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking return type of signal handlers" >&5
++echo $ECHO_N "checking return type of signal handlers... $ECHO_C" >&6; }
+ if test "${ac_cv_type_signal+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -11942,56 +14086,61 @@
+ /* end confdefs.h. */
+ #include <sys/types.h>
+ #include <signal.h>
+-#ifdef signal
+-# undef signal
+-#endif
+-#ifdef __cplusplus
+-extern "C" void (*signal (int, void (*)(int)))(int);
+-#else
+-void (*signal ()) ();
+-#endif
+
+ int
+ main ()
+ {
+-int i;
++return *(signal (0, 0)) (0) == 1;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_type_signal=void
++ ac_cv_type_signal=int
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_type_signal=int
++ ac_cv_type_signal=void
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_signal" >&5
+-echo "${ECHO_T}$ac_cv_type_signal" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_signal" >&5
++echo "${ECHO_T}$ac_cv_type_signal" >&6; }
+
+ cat >>confdefs.h <<_ACEOF
+ #define RETSIGTYPE $ac_cv_type_signal
+@@ -11999,8 +14148,8 @@
+
+
+ test "$ac_cv_func_select" = yes || ncbi_cv_func_select_updates_timeout=no
+-echo "$as_me:$LINENO: checking whether select updates the timeout when interrupted" >&5
+-echo $ECHO_N "checking whether select updates the timeout when interrupted... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether select updates the timeout when interrupted" >&5
++echo $ECHO_N "checking whether select updates the timeout when interrupted... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_select_updates_timeout+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12041,13 +14190,22 @@
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12060,11 +14218,13 @@
+ ( exit $ac_status )
+ ncbi_cv_func_select_updates_timeout=no
+ fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
++
++
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_select_updates_timeout" >&5
+-echo "${ECHO_T}$ncbi_cv_func_select_updates_timeout" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_select_updates_timeout" >&5
++echo "${ECHO_T}$ncbi_cv_func_select_updates_timeout" >&6; }
+ if test "$ncbi_cv_func_select_updates_timeout" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -12078,8 +14238,8 @@
+ # is yes when cross-compiling; anyone cross-compiling for exceptional
+ # platforms can set ncbi_cv_func_strcasecmp_lc=no in config.site.
+ if test "$ac_cv_func_strcasecmp" = yes; then
+- echo "$as_me:$LINENO: checking whether strcasecmp treats letters as lowercase" >&5
+-echo $ECHO_N "checking whether strcasecmp treats letters as lowercase... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether strcasecmp treats letters as lowercase" >&5
++echo $ECHO_N "checking whether strcasecmp treats letters as lowercase... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_strcasecmp_lc+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12102,13 +14262,22 @@
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12121,11 +14290,13 @@
+ ( exit $ac_status )
+ ncbi_cv_func_strcasecmp_lc=no
+ fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
++
++
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_strcasecmp_lc" >&5
+-echo "${ECHO_T}$ncbi_cv_func_strcasecmp_lc" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_strcasecmp_lc" >&5
++echo "${ECHO_T}$ncbi_cv_func_strcasecmp_lc" >&6; }
+ if test "$ncbi_cv_func_strcasecmp_lc" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -12135,8 +14306,8 @@
+ fi
+ fi
+
+-echo "$as_me:$LINENO: checking for Linux-like sysinfo with 1 arg" >&5
+-echo $ECHO_N "checking for Linux-like sysinfo with 1 arg... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for Linux-like sysinfo with 1 arg" >&5
++echo $ECHO_N "checking for Linux-like sysinfo with 1 arg... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_sysinfo_1+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12160,24 +14331,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12188,10 +14371,11 @@
+
+ ncbi_cv_func_sysinfo_1=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_sysinfo_1" >&5
+-echo "${ECHO_T}$ncbi_cv_func_sysinfo_1" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_sysinfo_1" >&5
++echo "${ECHO_T}$ncbi_cv_func_sysinfo_1" >&6; }
+
+ if test "$ncbi_cv_func_sysinfo_1" = yes; then
+
+@@ -12205,9 +14389,9 @@
+ for ac_func in getloadavg
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -12233,53 +14417,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12290,11 +14480,13 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+@@ -12306,8 +14498,8 @@
+
+ ## readdir_r() -- 2 different variants: 2-arg (trad. Solaris), 3-arg (POSIX).
+
+-echo "$as_me:$LINENO: checking for readdir_r" >&5
+-echo $ECHO_N "checking for readdir_r... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for readdir_r" >&5
++echo $ECHO_N "checking for readdir_r... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_readdir_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12328,24 +14520,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12354,8 +14558,10 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ if test "$ncbi_cv_func_readdir_r" = "no" ; then
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -12373,24 +14579,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12399,12 +14617,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_readdir_r" >&5
+-echo "${ECHO_T}$ncbi_cv_func_readdir_r" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_readdir_r" >&5
++echo "${ECHO_T}$ncbi_cv_func_readdir_r" >&6; }
+
+ if test "$ncbi_cv_func_readdir_r" != "no" ; then
+
+@@ -12415,8 +14635,8 @@
+ fi
+
+ ### Check for typedefs, structures, and compiler features.
+-echo "$as_me:$LINENO: checking for an ANSI C-conforming const" >&5
+-echo $ECHO_N "checking for an ANSI C-conforming const... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for an ANSI C-conforming const" >&5
++echo $ECHO_N "checking for an ANSI C-conforming const... $ECHO_C" >&6; }
+ if test "${ac_cv_c_const+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12456,6 +14676,7 @@
+ char const *s = 0 ? (char *) 0 : (char const *) 0;
+
+ *t++ = 0;
++ if (s) return 0;
+ }
+ { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */
+ int x[] = {25, 17};
+@@ -12474,7 +14695,9 @@
+ }
+ { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */
+ const int foo = 10;
++ if (!foo) return 0;
+ }
++ return !x[0] && !zero.x;
+ #endif
+
+ ;
+@@ -12482,24 +14705,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12510,10 +14745,11 @@
+
+ ac_cv_c_const=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_c_const" >&5
+-echo "${ECHO_T}$ac_cv_c_const" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_c_const" >&5
++echo "${ECHO_T}$ac_cv_c_const" >&6; }
+ if test $ac_cv_c_const = no; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -12525,8 +14761,8 @@
+
+ ### Check for C standard types and sizes
+ if test "${with_universal-no}" = "no"; then
+- echo "$as_me:$LINENO: checking whether byte ordering is bigendian" >&5
+-echo $ECHO_N "checking whether byte ordering is bigendian... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether byte ordering is bigendian" >&5
++echo $ECHO_N "checking whether byte ordering is bigendian... $ECHO_C" >&6; }
+ if test "${ac_cv_c_bigendian+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12552,24 +14788,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12595,24 +14843,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12623,7 +14883,8 @@
+
+ ac_cv_c_bigendian=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+@@ -12638,11 +14899,11 @@
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-short ascii_mm[] = { 0x4249, 0x4765, 0x6E44, 0x6961, 0x6E53, 0x7953, 0 };
+-short ascii_ii[] = { 0x694C, 0x5454, 0x656C, 0x6E45, 0x6944, 0x6E61, 0 };
++short int ascii_mm[] = { 0x4249, 0x4765, 0x6E44, 0x6961, 0x6E53, 0x7953, 0 };
++short int ascii_ii[] = { 0x694C, 0x5454, 0x656C, 0x6E45, 0x6944, 0x6E61, 0 };
+ void _ascii () { char *s = (char *) ascii_mm; s = (char *) ascii_ii; }
+-short ebcdic_ii[] = { 0x89D3, 0xE3E3, 0x8593, 0x95C5, 0x89C4, 0x9581, 0 };
+-short ebcdic_mm[] = { 0xC2C9, 0xC785, 0x95C4, 0x8981, 0x95E2, 0xA8E2, 0 };
++short int ebcdic_ii[] = { 0x89D3, 0xE3E3, 0x8593, 0x95C5, 0x89C4, 0x9581, 0 };
++short int ebcdic_mm[] = { 0xC2C9, 0xC785, 0x95C4, 0x8981, 0x95E2, 0xA8E2, 0 };
+ void _ebcdic () { char *s = (char *) ebcdic_mm; s = (char *) ebcdic_ii; }
+ int
+ main ()
+@@ -12653,24 +14914,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12689,8 +14962,10 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -12698,27 +14973,41 @@
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
++$ac_includes_default
+ int
+ main ()
+ {
++
+ /* Are we little or big endian? From Harbison&Steele. */
+ union
+ {
+- long l;
+- char c[sizeof (long)];
++ long int l;
++ char c[sizeof (long int)];
+ } u;
+ u.l = 1;
+- exit (u.c[sizeof (long) - 1] == 1);
++ return u.c[sizeof (long int) - 1] == 1;
++
++ ;
++ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12731,13 +15020,16 @@
+ ( exit $ac_status )
+ ac_cv_c_bigendian=yes
+ fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
++
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_c_bigendian" >&5
+-echo "${ECHO_T}$ac_cv_c_bigendian" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_c_bigendian" >&5
++echo "${ECHO_T}$ac_cv_c_bigendian" >&6; }
+ case $ac_cv_c_bigendian in
+ yes)
+
+@@ -12756,8 +15048,8 @@
+ esac
+
+
+-echo "$as_me:$LINENO: checking whether char is unsigned" >&5
+-echo $ECHO_N "checking whether char is unsigned... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether char is unsigned" >&5
++echo $ECHO_N "checking whether char is unsigned... $ECHO_C" >&6; }
+ if test "${ac_cv_c_char_unsigned+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12779,24 +15071,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12807,10 +15111,11 @@
+
+ ac_cv_c_char_unsigned=yes
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_c_char_unsigned" >&5
+-echo "${ECHO_T}$ac_cv_c_char_unsigned" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_c_char_unsigned" >&5
++echo "${ECHO_T}$ac_cv_c_char_unsigned" >&6; }
+ if test $ac_cv_c_char_unsigned = yes && test "$GCC" != yes; then
+ cat >>confdefs.h <<\_ACEOF
+ #define __CHAR_UNSIGNED__ 1
+@@ -12818,8 +15123,8 @@
+
+ fi
+
+- echo "$as_me:$LINENO: checking for char" >&5
+-echo $ECHO_N "checking for char... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for char" >&5
++echo $ECHO_N "checking for char... $ECHO_C" >&6; }
+ if test "${ac_cv_type_char+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -12830,36 +15135,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef char ac__type_new_;
+ int
+ main ()
+ {
+-if ((char *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (char))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12870,18 +15188,19 @@
+
+ ac_cv_type_char=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_char" >&5
+-echo "${ECHO_T}$ac_cv_type_char" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_char" >&5
++echo "${ECHO_T}$ac_cv_type_char" >&6; }
+
+-echo "$as_me:$LINENO: checking size of char" >&5
+-echo $ECHO_N "checking size of char... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of char" >&5
++echo $ECHO_N "checking size of char... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_char+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_char" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -12894,10 +15213,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef char ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (char))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -12905,24 +15225,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12935,10 +15267,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef char ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (char))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -12946,24 +15279,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -12979,7 +15324,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -12992,10 +15338,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef char ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (char))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -13003,24 +15350,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13033,10 +15392,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef char ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (char))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13044,24 +15404,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13077,7 +15449,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -13085,9 +15458,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -13098,10 +15473,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef char ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (char))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13109,24 +15485,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13137,24 +15525,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_char=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (char), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (char)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (char), 77
++echo "$as_me: error: cannot compute sizeof (char)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -13162,8 +15544,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (char)); }
+-unsigned long ulongval () { return (long) (sizeof (char)); }
++ typedef char ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -13172,35 +15555,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (char))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (char))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (char))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13211,29 +15603,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (char), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (char)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (char), 77
++echo "$as_me: error: cannot compute sizeof (char)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_char=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_char" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_char" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_char" >&5
++echo "${ECHO_T}$ac_cv_sizeof_char" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_CHAR $ac_cv_sizeof_char
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for double" >&5
+-echo $ECHO_N "checking for double... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for double" >&5
++echo $ECHO_N "checking for double... $ECHO_C" >&6; }
+ if test "${ac_cv_type_double+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -13244,36 +15635,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef double ac__type_new_;
+ int
+ main ()
+ {
+-if ((double *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (double))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13284,18 +15688,19 @@
+
+ ac_cv_type_double=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_double" >&5
+-echo "${ECHO_T}$ac_cv_type_double" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_double" >&5
++echo "${ECHO_T}$ac_cv_type_double" >&6; }
+
+-echo "$as_me:$LINENO: checking size of double" >&5
+-echo $ECHO_N "checking size of double... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of double" >&5
++echo $ECHO_N "checking size of double... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_double+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_double" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -13308,10 +15713,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (double))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -13319,24 +15725,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13349,10 +15767,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (double))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13360,24 +15779,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13393,7 +15824,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -13406,10 +15838,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (double))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -13417,24 +15850,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13447,10 +15892,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (double))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13458,24 +15904,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13491,7 +15949,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -13499,9 +15958,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -13512,10 +15973,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (double))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13523,24 +15985,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13551,24 +16025,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_double=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (double), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (double)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (double), 77
++echo "$as_me: error: cannot compute sizeof (double)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -13576,8 +16044,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (double)); }
+-unsigned long ulongval () { return (long) (sizeof (double)); }
++ typedef double ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -13586,35 +16055,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (double))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (double))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (double))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13625,29 +16103,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (double), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (double)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (double), 77
++echo "$as_me: error: cannot compute sizeof (double)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_double=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_double" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_double" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_double" >&5
++echo "${ECHO_T}$ac_cv_sizeof_double" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_DOUBLE $ac_cv_sizeof_double
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for float" >&5
+-echo $ECHO_N "checking for float... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for float" >&5
++echo $ECHO_N "checking for float... $ECHO_C" >&6; }
+ if test "${ac_cv_type_float+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -13658,36 +16135,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef float ac__type_new_;
+ int
+ main ()
+ {
+-if ((float *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (float))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13698,18 +16188,19 @@
+
+ ac_cv_type_float=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_float" >&5
+-echo "${ECHO_T}$ac_cv_type_float" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_float" >&5
++echo "${ECHO_T}$ac_cv_type_float" >&6; }
+
+-echo "$as_me:$LINENO: checking size of float" >&5
+-echo $ECHO_N "checking size of float... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of float" >&5
++echo $ECHO_N "checking size of float... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_float+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_float" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -13722,10 +16213,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef float ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (float))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -13733,24 +16225,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13763,10 +16267,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef float ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (float))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13774,24 +16279,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13807,7 +16324,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -13820,10 +16338,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef float ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (float))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -13831,24 +16350,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13861,10 +16392,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef float ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (float))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13872,24 +16404,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13905,7 +16449,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -13913,9 +16458,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -13926,10 +16473,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef float ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (float))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -13937,24 +16485,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -13965,24 +16525,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_float=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (float), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (float)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (float), 77
++echo "$as_me: error: cannot compute sizeof (float)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -13990,8 +16544,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (float)); }
+-unsigned long ulongval () { return (long) (sizeof (float)); }
++ typedef float ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -14000,35 +16555,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (float))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (float))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (float))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14039,29 +16603,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (float), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (float)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (float), 77
++echo "$as_me: error: cannot compute sizeof (float)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_float=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_float" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_float" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_float" >&5
++echo "${ECHO_T}$ac_cv_sizeof_float" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_FLOAT $ac_cv_sizeof_float
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for int" >&5
+-echo $ECHO_N "checking for int... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for int" >&5
++echo $ECHO_N "checking for int... $ECHO_C" >&6; }
+ if test "${ac_cv_type_int+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -14072,36 +16635,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef int ac__type_new_;
+ int
+ main ()
+ {
+-if ((int *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (int))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14112,18 +16688,19 @@
+
+ ac_cv_type_int=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_int" >&5
+-echo "${ECHO_T}$ac_cv_type_int" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_int" >&5
++echo "${ECHO_T}$ac_cv_type_int" >&6; }
+
+-echo "$as_me:$LINENO: checking size of int" >&5
+-echo $ECHO_N "checking size of int... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of int" >&5
++echo $ECHO_N "checking size of int... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_int+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_int" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -14136,10 +16713,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef int ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (int))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -14147,24 +16725,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14177,10 +16767,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef int ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (int))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -14188,24 +16779,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14221,7 +16824,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -14234,10 +16838,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef int ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (int))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -14245,24 +16850,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14275,10 +16892,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef int ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (int))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -14286,24 +16904,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14319,7 +16949,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -14327,9 +16958,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -14340,10 +16973,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef int ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (int))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -14351,24 +16985,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14379,24 +17025,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_int=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (int), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (int)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (int), 77
++echo "$as_me: error: cannot compute sizeof (int)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -14404,8 +17044,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (int)); }
+-unsigned long ulongval () { return (long) (sizeof (int)); }
++ typedef int ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -14414,35 +17055,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (int))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (int))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (int))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14453,29 +17103,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (int), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (int)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (int), 77
++echo "$as_me: error: cannot compute sizeof (int)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_int=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_int" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_int" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_int" >&5
++echo "${ECHO_T}$ac_cv_sizeof_int" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_INT $ac_cv_sizeof_int
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for long" >&5
+-echo $ECHO_N "checking for long... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for long" >&5
++echo $ECHO_N "checking for long... $ECHO_C" >&6; }
+ if test "${ac_cv_type_long+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -14486,36 +17135,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef long ac__type_new_;
+ int
+ main ()
+ {
+-if ((long *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (long))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14526,18 +17188,19 @@
+
+ ac_cv_type_long=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_long" >&5
+-echo "${ECHO_T}$ac_cv_type_long" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_long" >&5
++echo "${ECHO_T}$ac_cv_type_long" >&6; }
+
+-echo "$as_me:$LINENO: checking size of long" >&5
+-echo $ECHO_N "checking size of long... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of long" >&5
++echo $ECHO_N "checking size of long... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_long+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_long" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -14550,10 +17213,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -14561,24 +17225,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14591,10 +17267,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -14602,24 +17279,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14635,7 +17324,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -14648,10 +17338,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -14659,24 +17350,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14689,10 +17392,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -14700,24 +17404,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14733,7 +17449,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -14741,9 +17458,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -14754,10 +17473,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -14765,24 +17485,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14793,24 +17525,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_long=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (long), 77
++echo "$as_me: error: cannot compute sizeof (long)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -14818,8 +17544,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (long)); }
+-unsigned long ulongval () { return (long) (sizeof (long)); }
++ typedef long ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -14828,35 +17555,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (long))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (long))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (long))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14867,29 +17603,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (long), 77
++echo "$as_me: error: cannot compute sizeof (long)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_long=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_long" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_long" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_long" >&5
++echo "${ECHO_T}$ac_cv_sizeof_long" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_LONG $ac_cv_sizeof_long
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for long double" >&5
+-echo $ECHO_N "checking for long double... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for long double" >&5
++echo $ECHO_N "checking for long double... $ECHO_C" >&6; }
+ if test "${ac_cv_type_long_double+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -14900,36 +17635,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef long double ac__type_new_;
+ int
+ main ()
+ {
+-if ((long double *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (long double))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -14940,18 +17688,19 @@
+
+ ac_cv_type_long_double=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_long_double" >&5
+-echo "${ECHO_T}$ac_cv_type_long_double" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_long_double" >&5
++echo "${ECHO_T}$ac_cv_type_long_double" >&6; }
+
+-echo "$as_me:$LINENO: checking size of long double" >&5
+-echo $ECHO_N "checking size of long double... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of long double" >&5
++echo $ECHO_N "checking size of long double... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_long_double+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_long_double" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -14964,10 +17713,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long double))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -14975,24 +17725,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15005,10 +17767,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long double))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15016,24 +17779,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15049,7 +17824,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -15062,10 +17838,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long double))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -15073,24 +17850,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15103,10 +17892,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long double))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15114,24 +17904,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15147,7 +17949,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -15155,9 +17958,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -15168,10 +17973,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long double ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long double))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15179,24 +17985,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15207,24 +18025,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_long_double=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long double), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long double)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (long double), 77
++echo "$as_me: error: cannot compute sizeof (long double)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -15232,8 +18044,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (long double)); }
+-unsigned long ulongval () { return (long) (sizeof (long double)); }
++ typedef long double ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -15242,35 +18055,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (long double))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (long double))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (long double))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15281,29 +18103,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long double), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long double)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (long double), 77
++echo "$as_me: error: cannot compute sizeof (long double)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_long_double=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_double" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_long_double" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_double" >&5
++echo "${ECHO_T}$ac_cv_sizeof_long_double" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_LONG_DOUBLE $ac_cv_sizeof_long_double
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for long long" >&5
+-echo $ECHO_N "checking for long long... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for long long" >&5
++echo $ECHO_N "checking for long long... $ECHO_C" >&6; }
+ if test "${ac_cv_type_long_long+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -15314,36 +18135,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef long long ac__type_new_;
+ int
+ main ()
+ {
+-if ((long long *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (long long))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15354,18 +18188,19 @@
+
+ ac_cv_type_long_long=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_long_long" >&5
+-echo "${ECHO_T}$ac_cv_type_long_long" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_long_long" >&5
++echo "${ECHO_T}$ac_cv_type_long_long" >&6; }
+
+-echo "$as_me:$LINENO: checking size of long long" >&5
+-echo $ECHO_N "checking size of long long... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of long long" >&5
++echo $ECHO_N "checking size of long long... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_long_long+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_long_long" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -15378,10 +18213,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long long))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -15389,24 +18225,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15419,10 +18267,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long long))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15430,24 +18279,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15463,7 +18324,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -15476,10 +18338,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long long))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -15487,24 +18350,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15517,10 +18392,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long long))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15528,24 +18404,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15561,7 +18449,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -15569,9 +18458,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -15582,10 +18473,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef long long ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (long long))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15593,24 +18485,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15621,24 +18525,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_long_long=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long long), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long long)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (long long), 77
++echo "$as_me: error: cannot compute sizeof (long long)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -15646,8 +18544,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (long long)); }
+-unsigned long ulongval () { return (long) (sizeof (long long)); }
++ typedef long long ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -15656,35 +18555,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (long long))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (long long))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (long long))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15695,29 +18603,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long long), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long long)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (long long), 77
++echo "$as_me: error: cannot compute sizeof (long long)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_long_long=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_long" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_long_long" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_long" >&5
++echo "${ECHO_T}$ac_cv_sizeof_long_long" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_LONG_LONG $ac_cv_sizeof_long_long
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for short" >&5
+-echo $ECHO_N "checking for short... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for short" >&5
++echo $ECHO_N "checking for short... $ECHO_C" >&6; }
+ if test "${ac_cv_type_short+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -15728,36 +18635,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef short ac__type_new_;
+ int
+ main ()
+ {
+-if ((short *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (short))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15768,18 +18688,19 @@
+
+ ac_cv_type_short=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_short" >&5
+-echo "${ECHO_T}$ac_cv_type_short" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_short" >&5
++echo "${ECHO_T}$ac_cv_type_short" >&6; }
+
+-echo "$as_me:$LINENO: checking size of short" >&5
+-echo $ECHO_N "checking size of short... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of short" >&5
++echo $ECHO_N "checking size of short... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_short+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_short" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -15792,10 +18713,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef short ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (short))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -15803,24 +18725,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15833,10 +18767,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef short ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (short))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15844,24 +18779,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15877,7 +18824,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -15890,10 +18838,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef short ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (short))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -15901,24 +18850,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15931,10 +18892,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef short ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (short))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -15942,24 +18904,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -15975,7 +18949,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -15983,9 +18958,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -15996,10 +18973,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef short ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (short))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -16007,24 +18985,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16035,24 +19025,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_short=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (short), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (short)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (short), 77
++echo "$as_me: error: cannot compute sizeof (short)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -16060,8 +19044,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (short)); }
+-unsigned long ulongval () { return (long) (sizeof (short)); }
++ typedef short ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -16070,35 +19055,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (short))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (short))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (short))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16109,29 +19103,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (short), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (short)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (short), 77
++echo "$as_me: error: cannot compute sizeof (short)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_short=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_short" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_short" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_short" >&5
++echo "${ECHO_T}$ac_cv_sizeof_short" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_SHORT $ac_cv_sizeof_short
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for void*" >&5
+-echo $ECHO_N "checking for void*... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for void*" >&5
++echo $ECHO_N "checking for void*... $ECHO_C" >&6; }
+ if test "${ac_cv_type_voidp+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -16142,36 +19135,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef void* ac__type_new_;
+ int
+ main ()
+ {
+-if ((void* *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (void*))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16182,18 +19188,19 @@
+
+ ac_cv_type_voidp=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_voidp" >&5
+-echo "${ECHO_T}$ac_cv_type_voidp" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_voidp" >&5
++echo "${ECHO_T}$ac_cv_type_voidp" >&6; }
+
+-echo "$as_me:$LINENO: checking size of void*" >&5
+-echo $ECHO_N "checking size of void*... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of void*" >&5
++echo $ECHO_N "checking size of void*... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof_voidp+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type_voidp" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -16206,10 +19213,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef void* ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (void*))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -16217,24 +19225,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16247,10 +19267,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef void* ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (void*))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -16258,24 +19279,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16291,7 +19324,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -16304,10 +19338,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef void* ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (void*))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -16315,24 +19350,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16345,10 +19392,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef void* ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (void*))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -16356,24 +19404,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16389,7 +19449,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -16397,9 +19458,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -16410,10 +19473,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef void* ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (void*))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -16421,24 +19485,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16449,24 +19525,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof_voidp=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (void*), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (void*)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (void*), 77
++echo "$as_me: error: cannot compute sizeof (void*)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -16474,8 +19544,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (void*)); }
+-unsigned long ulongval () { return (long) (sizeof (void*)); }
++ typedef void* ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -16484,35 +19555,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (void*))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (void*))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (void*))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16523,29 +19603,28 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (void*), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (void*)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (void*), 77
++echo "$as_me: error: cannot compute sizeof (void*)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof_voidp=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof_voidp" >&5
+-echo "${ECHO_T}$ac_cv_sizeof_voidp" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_voidp" >&5
++echo "${ECHO_T}$ac_cv_sizeof_voidp" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF_VOIDP $ac_cv_sizeof_voidp
+ _ACEOF
+
+
+- echo "$as_me:$LINENO: checking for __int64" >&5
+-echo $ECHO_N "checking for __int64... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for __int64" >&5
++echo $ECHO_N "checking for __int64... $ECHO_C" >&6; }
+ if test "${ac_cv_type___int64+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -16556,36 +19635,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef __int64 ac__type_new_;
+ int
+ main ()
+ {
+-if ((__int64 *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (__int64))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16596,18 +19688,19 @@
+
+ ac_cv_type___int64=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type___int64" >&5
+-echo "${ECHO_T}$ac_cv_type___int64" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type___int64" >&5
++echo "${ECHO_T}$ac_cv_type___int64" >&6; }
+
+-echo "$as_me:$LINENO: checking size of __int64" >&5
+-echo $ECHO_N "checking size of __int64... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking size of __int64" >&5
++echo $ECHO_N "checking size of __int64... $ECHO_C" >&6; }
+ if test "${ac_cv_sizeof___int64+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ if test "$ac_cv_type___int64" = yes; then
+- # The cast to unsigned long works around a bug in the HP C Compiler
++ # The cast to long int works around a bug in the HP C Compiler
+ # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
+ # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
+ # This bug is HP SR number 8606223364.
+@@ -16620,10 +19713,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef __int64 ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (__int64))) >= 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
+ test_array [0] = 0
+
+ ;
+@@ -16631,24 +19725,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16661,10 +19767,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef __int64 ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (__int64))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -16672,24 +19779,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16705,7 +19824,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -16718,10 +19838,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef __int64 ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (__int64))) < 0)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
+ test_array [0] = 0
+
+ ;
+@@ -16729,24 +19850,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16759,10 +19892,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef __int64 ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (__int64))) >= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -16770,24 +19904,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16803,7 +19949,8 @@
+ fi
+ ac_mid=`expr 2 '*' $ac_mid`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ else
+ echo "$as_me: failed program was:" >&5
+@@ -16811,9 +19958,11 @@
+
+ ac_lo= ac_hi=
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ # Binary search between lo and hi bounds.
+ while test "x$ac_lo" != "x$ac_hi"; do
+ ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
+@@ -16824,10 +19973,11 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++ typedef __int64 ac__type_sizeof_;
+ int
+ main ()
+ {
+-static int test_array [1 - 2 * !(((long) (sizeof (__int64))) <= $ac_mid)];
++static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
+ test_array [0] = 0
+
+ ;
+@@ -16835,24 +19985,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16863,24 +20025,18 @@
+
+ ac_lo=`expr '(' $ac_mid ')' + 1`
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ case $ac_lo in
+ ?*) ac_cv_sizeof___int64=$ac_lo;;
+-'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64), 77
++'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (__int64), 77
++echo "$as_me: error: cannot compute sizeof (__int64)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; } ;;
++ { (exit 77); exit 77; }; } ;;
+ esac
+ else
+- if test "$cross_compiling" = yes; then
+- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot run test program while cross compiling
+-See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-else
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -16888,8 +20044,9 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
+-long longval () { return (long) (sizeof (__int64)); }
+-unsigned long ulongval () { return (long) (sizeof (__int64)); }
++ typedef __int64 ac__type_sizeof_;
++static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
++static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
+ #include <stdio.h>
+ #include <stdlib.h>
+ int
+@@ -16898,35 +20055,44 @@
+
+ FILE *f = fopen ("conftest.val", "w");
+ if (! f)
+- exit (1);
+- if (((long) (sizeof (__int64))) < 0)
++ return 1;
++ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
+ {
+- long i = longval ();
+- if (i != ((long) (sizeof (__int64))))
+- exit (1);
++ long int i = longval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%ld\n", i);
+ }
+ else
+ {
+- unsigned long i = ulongval ();
+- if (i != ((long) (sizeof (__int64))))
+- exit (1);
++ unsigned long int i = ulongval ();
++ if (i != ((long int) (sizeof (ac__type_sizeof_))))
++ return 1;
+ fprintf (f, "%lu\n", i);
+ }
+- exit (ferror (f) || fclose (f) != 0);
++ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -16937,30 +20103,29 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ ( exit $ac_status )
+-{ { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64), 77
++{ { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64)
+ See \`config.log' for more details." >&5
+-echo "$as_me: error: cannot compute sizeof (__int64), 77
++echo "$as_me: error: cannot compute sizeof (__int64)
+ See \`config.log' for more details." >&2;}
+- { (exit 1); exit 1; }; }
+-fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++ { (exit 77); exit 77; }; }
+ fi
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+ rm -f conftest.val
+ else
+ ac_cv_sizeof___int64=0
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_sizeof___int64" >&5
+-echo "${ECHO_T}$ac_cv_sizeof___int64" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_sizeof___int64" >&5
++echo "${ECHO_T}$ac_cv_sizeof___int64" >&6; }
+ cat >>confdefs.h <<_ACEOF
+ #define SIZEOF___INT64 $ac_cv_sizeof___int64
+ _ACEOF
+
+
+ fi
+-echo "$as_me:$LINENO: checking for intptr_t" >&5
+-echo $ECHO_N "checking for intptr_t... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for intptr_t" >&5
++echo $ECHO_N "checking for intptr_t... $ECHO_C" >&6; }
+ if test "${ac_cv_type_intptr_t+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -16971,36 +20136,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef intptr_t ac__type_new_;
+ int
+ main ()
+ {
+-if ((intptr_t *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (intptr_t))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17011,10 +20189,11 @@
+
+ ac_cv_type_intptr_t=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_intptr_t" >&5
+-echo "${ECHO_T}$ac_cv_type_intptr_t" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_intptr_t" >&5
++echo "${ECHO_T}$ac_cv_type_intptr_t" >&6; }
+ if test $ac_cv_type_intptr_t = yes; then
+
+ cat >>confdefs.h <<_ACEOF
+@@ -17023,8 +20202,8 @@
+
+
+ fi
+-echo "$as_me:$LINENO: checking for uintptr_t" >&5
+-echo $ECHO_N "checking for uintptr_t... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for uintptr_t" >&5
++echo $ECHO_N "checking for uintptr_t... $ECHO_C" >&6; }
+ if test "${ac_cv_type_uintptr_t+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17035,36 +20214,49 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ $ac_includes_default
++typedef uintptr_t ac__type_new_;
+ int
+ main ()
+ {
+-if ((uintptr_t *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (uintptr_t))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17075,10 +20267,11 @@
+
+ ac_cv_type_uintptr_t=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_uintptr_t" >&5
+-echo "${ECHO_T}$ac_cv_type_uintptr_t" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_uintptr_t" >&5
++echo "${ECHO_T}$ac_cv_type_uintptr_t" >&6; }
+ if test $ac_cv_type_uintptr_t = yes; then
+
+ cat >>confdefs.h <<_ACEOF
+@@ -17089,8 +20282,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking for struct sockaddr_in.sin_len" >&5
+-echo $ECHO_N "checking for struct sockaddr_in.sin_len... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for struct sockaddr_in.sin_len" >&5
++echo $ECHO_N "checking for struct sockaddr_in.sin_len... $ECHO_C" >&6; }
+ if test "${ac_cv_member_struct_sockaddr_in_sin_len+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17114,24 +20307,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17160,24 +20365,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17188,12 +20405,14 @@
+
+ ac_cv_member_struct_sockaddr_in_sin_len=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_member_struct_sockaddr_in_sin_len" >&5
+-echo "${ECHO_T}$ac_cv_member_struct_sockaddr_in_sin_len" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_member_struct_sockaddr_in_sin_len" >&5
++echo "${ECHO_T}$ac_cv_member_struct_sockaddr_in_sin_len" >&6; }
+ if test $ac_cv_member_struct_sockaddr_in_sin_len = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17203,8 +20422,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking for struct tm.tm_zone" >&5
+-echo $ECHO_N "checking for struct tm.tm_zone... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for struct tm.tm_zone" >&5
++echo $ECHO_N "checking for struct tm.tm_zone... $ECHO_C" >&6; }
+ if test "${ac_cv_member_struct_tm_tm_zone+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17227,24 +20446,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17272,24 +20503,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17300,12 +20543,14 @@
+
+ ac_cv_member_struct_tm_tm_zone=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm_tm_zone" >&5
+-echo "${ECHO_T}$ac_cv_member_struct_tm_tm_zone" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm_tm_zone" >&5
++echo "${ECHO_T}$ac_cv_member_struct_tm_tm_zone" >&6; }
+ if test $ac_cv_member_struct_tm_tm_zone = yes; then
+
+ cat >>confdefs.h <<_ACEOF
+@@ -17314,8 +20559,8 @@
+
+
+ fi
+-echo "$as_me:$LINENO: checking for struct tm.__tm_zone" >&5
+-echo $ECHO_N "checking for struct tm.__tm_zone... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for struct tm.__tm_zone" >&5
++echo $ECHO_N "checking for struct tm.__tm_zone... $ECHO_C" >&6; }
+ if test "${ac_cv_member_struct_tm___tm_zone+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17338,24 +20583,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17383,24 +20640,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17411,12 +20680,14 @@
+
+ ac_cv_member_struct_tm___tm_zone=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm___tm_zone" >&5
+-echo "${ECHO_T}$ac_cv_member_struct_tm___tm_zone" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm___tm_zone" >&5
++echo "${ECHO_T}$ac_cv_member_struct_tm___tm_zone" >&6; }
+ if test $ac_cv_member_struct_tm___tm_zone = yes; then
+
+ cat >>confdefs.h <<_ACEOF
+@@ -17428,8 +20699,8 @@
+
+
+
+-echo "$as_me:$LINENO: checking whether function prototypes can use throw(...)" >&5
+-echo $ECHO_N "checking whether function prototypes can use throw(...)... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether function prototypes can use throw(...)" >&5
++echo $ECHO_N "checking whether function prototypes can use throw(...)... $ECHO_C" >&6; }
+ if test "${ncbi_cv_cxx_throw_spec+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17451,24 +20722,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17479,10 +20762,11 @@
+
+ ncbi_cv_cxx_throw_spec=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_cxx_throw_spec" >&5
+-echo "${ECHO_T}$ncbi_cv_cxx_throw_spec" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_cxx_throw_spec" >&5
++echo "${ECHO_T}$ncbi_cv_cxx_throw_spec" >&6; }
+ if test "$ncbi_cv_cxx_throw_spec" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17492,8 +20776,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking for obsolete string::compare() syntax" >&5
+-echo $ECHO_N "checking for obsolete string::compare() syntax... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for obsolete string::compare() syntax" >&5
++echo $ECHO_N "checking for obsolete string::compare() syntax... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_string_compare_obsolete+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17513,24 +20797,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17541,10 +20837,11 @@
+
+ ncbi_cv_func_string_compare_obsolete=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_string_compare_obsolete" >&5
+-echo "${ECHO_T}$ncbi_cv_func_string_compare_obsolete" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_string_compare_obsolete" >&5
++echo "${ECHO_T}$ncbi_cv_func_string_compare_obsolete" >&6; }
+ if test "$ncbi_cv_func_string_compare_obsolete" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17554,8 +20851,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking whether the auto_ptr template class works" >&5
+-echo $ECHO_N "checking whether the auto_ptr template class works... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether the auto_ptr template class works" >&5
++echo $ECHO_N "checking whether the auto_ptr template class works... $ECHO_C" >&6; }
+ if test "${ncbi_cv_type_auto_ptr_works+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17575,24 +20872,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17603,10 +20912,11 @@
+
+ ncbi_cv_type_auto_ptr_works=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_type_auto_ptr_works" >&5
+-echo "${ECHO_T}$ncbi_cv_type_auto_ptr_works" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_type_auto_ptr_works" >&5
++echo "${ECHO_T}$ncbi_cv_type_auto_ptr_works" >&6; }
+ if test "$ncbi_cv_cxx_auto_ptr_works" = no; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17616,8 +20926,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking for min/max templates" >&5
+-echo $ECHO_N "checking for min/max templates... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for min/max templates" >&5
++echo $ECHO_N "checking for min/max templates... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_min_max+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17645,24 +20955,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17673,10 +20995,11 @@
+
+ ncbi_cv_func_min_max=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_min_max" >&5
+-echo "${ECHO_T}$ncbi_cv_func_min_max" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_min_max" >&5
++echo "${ECHO_T}$ncbi_cv_func_min_max" >&6; }
+ if test "$ncbi_cv_func_min_max" = no; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17686,8 +21009,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking whether new C++ streams have ios_base::" >&5
+-echo $ECHO_N "checking whether new C++ streams have ios_base::... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether new C++ streams have ios_base::" >&5
++echo $ECHO_N "checking whether new C++ streams have ios_base::... $ECHO_C" >&6; }
+ if test "${ncbi_cv_type_ios_base+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17707,24 +21030,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17735,10 +21070,11 @@
+
+ ncbi_cv_type_ios_base=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_type_ios_base" >&5
+-echo "${ECHO_T}$ncbi_cv_type_ios_base" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_type_ios_base" >&5
++echo "${ECHO_T}$ncbi_cv_type_ios_base" >&6; }
+ if test "$ncbi_cv_type_ios_base" = no; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17748,8 +21084,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking for ios(_base)::register_callback" >&5
+-echo $ECHO_N "checking for ios(_base)::register_callback... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for ios(_base)::register_callback" >&5
++echo $ECHO_N "checking for ios(_base)::register_callback... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_ios_register_callback+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17769,24 +21105,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17797,10 +21145,11 @@
+
+ ncbi_cv_func_ios_register_callback=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_ios_register_callback" >&5
+-echo "${ECHO_T}$ncbi_cv_func_ios_register_callback" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_ios_register_callback" >&5
++echo "${ECHO_T}$ncbi_cv_func_ios_register_callback" >&6; }
+ if test "$ncbi_cv_func_ios_register_callback" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17810,8 +21159,8 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking for std::char_traits::" >&5
+-echo $ECHO_N "checking for std::char_traits::... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for std::char_traits::" >&5
++echo $ECHO_N "checking for std::char_traits::... $ECHO_C" >&6; }
+ if test "${ncbi_cv_type_char_traits+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -17837,24 +21186,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17865,10 +21226,11 @@
+
+ ncbi_cv_type_char_traits=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_type_char_traits" >&5
+-echo "${ECHO_T}$ncbi_cv_type_char_traits" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_type_char_traits" >&5
++echo "${ECHO_T}$ncbi_cv_type_char_traits" >&6; }
+ if test "$ncbi_cv_type_char_traits" = no; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -17878,9 +21240,10 @@
+ fi
+
+
+-echo "$as_me:$LINENO: checking for std::is_sorted<> in <algorithm>" >&5
+-echo $ECHO_N "checking for std::is_sorted<> in <algorithm>... $ECHO_C" >&6
+-if test "${ncbi_cv_func_is_sorted+set}" = set; then
++
++{ echo "$as_me:$LINENO: checking for SysV semaphores" >&5
++echo $ECHO_N "checking for SysV semaphores... $ECHO_C" >&6; }
++if test "${ncbi_cv_sys_semaphores+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -17889,99 +21252,48 @@
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <algorithm>
++#include <sys/types.h>
++#include <sys/sem.h>
+ int
+ main ()
+ {
+-int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;
++struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT);
++ buf.sem_op = SEM_UNDO;
+ ;
+ return 0;
+ }
+ _ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_func_is_sorted=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_func_is_sorted=no
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_is_sorted" >&5
+-echo "${ECHO_T}$ncbi_cv_func_is_sorted" >&6
+-if test "$ncbi_cv_func_is_sorted" = yes; then
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_IS_SORTED 1
+-_ACEOF
+-
+-fi
+-
+-
+-
+-echo "$as_me:$LINENO: checking for SysV semaphores" >&5
+-echo $ECHO_N "checking for SysV semaphores... $ECHO_C" >&6
+-if test "${ncbi_cv_sys_semaphores+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <sys/types.h>
+-#include <sys/sem.h>
+-int
+-main ()
+-{
+-struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT);
+- buf.sem_op = SEM_UNDO;
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -17992,11 +21304,12 @@
+
+ ncbi_cv_sys_semaphores=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_sys_semaphores" >&5
+-echo "${ECHO_T}$ncbi_cv_sys_semaphores" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_semaphores" >&5
++echo "${ECHO_T}$ncbi_cv_sys_semaphores" >&6; }
+ if test "$ncbi_cv_sys_semaphores" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18005,8 +21318,8 @@
+
+ fi
+
+-echo "$as_me:$LINENO: checking for union semun" >&5
+-echo $ECHO_N "checking for union semun... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for union semun" >&5
++echo $ECHO_N "checking for union semun... $ECHO_C" >&6; }
+ if test "${ac_cv_type_union_semun+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18019,36 +21332,49 @@
+ #include <sys/types.h>
+ #include <sys/sem.h>
+
++typedef union semun ac__type_new_;
+ int
+ main ()
+ {
+-if ((union semun *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (union semun))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18059,10 +21385,11 @@
+
+ ac_cv_type_union_semun=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_union_semun" >&5
+-echo "${ECHO_T}$ac_cv_type_union_semun" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_union_semun" >&5
++echo "${ECHO_T}$ac_cv_type_union_semun" >&6; }
+ if test $ac_cv_type_union_semun = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18073,8 +21400,8 @@
+
+
+
+-echo "$as_me:$LINENO: checking which way the stack grows" >&5
+-echo $ECHO_N "checking which way the stack grows... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking which way the stack grows" >&5
++echo $ECHO_N "checking which way the stack grows... $ECHO_C" >&6; }
+ if test "${ncbi_cv_sys_stack_dir+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18097,13 +21424,22 @@
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18116,11 +21452,13 @@
+ ( exit $ac_status )
+ ncbi_cv_sys_stack_dir=down
+ fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
++
++
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_sys_stack_dir" >&5
+-echo "${ECHO_T}$ncbi_cv_sys_stack_dir" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_stack_dir" >&5
++echo "${ECHO_T}$ncbi_cv_sys_stack_dir" >&6; }
+ case "$ncbi_cv_sys_stack_dir" in
+ up)
+ cat >>confdefs.h <<\_ACEOF
+@@ -18141,8 +21479,8 @@
+ ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+-echo "$as_me:$LINENO: checking whether the preprocessor supports C99-style variadic macros" >&5
+-echo $ECHO_N "checking whether the preprocessor supports C99-style variadic macros... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether the preprocessor supports C99-style variadic macros" >&5
++echo $ECHO_N "checking whether the preprocessor supports C99-style variadic macros... $ECHO_C" >&6; }
+ if test "${ncbi_cv_cpp_std_varargs+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18165,24 +21503,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18193,10 +21543,11 @@
+
+ ncbi_cv_cpp_std_varargs=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_cpp_std_varargs" >&5
+-echo "${ECHO_T}$ncbi_cv_cpp_std_varargs" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_cpp_std_varargs" >&5
++echo "${ECHO_T}$ncbi_cv_cpp_std_varargs" >&6; }
+ if test "$ncbi_cv_cpp_std_varargs" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18205,8 +21556,8 @@
+
+ fi
+
+-echo "$as_me:$LINENO: checking whether the preprocessor supports GNU-style variadic macros" >&5
+-echo $ECHO_N "checking whether the preprocessor supports GNU-style variadic macros... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether the preprocessor supports GNU-style variadic macros" >&5
++echo $ECHO_N "checking whether the preprocessor supports GNU-style variadic macros... $ECHO_C" >&6; }
+ if test "${ncbi_cv_cpp_gnu_varargs+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18229,24 +21580,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18257,10 +21620,11 @@
+
+ ncbi_cv_cpp_gnu_varargs=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_cpp_gnu_varargs" >&5
+-echo "${ECHO_T}$ncbi_cv_cpp_gnu_varargs" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_cpp_gnu_varargs" >&5
++echo "${ECHO_T}$ncbi_cv_cpp_gnu_varargs" >&6; }
+ if test "$ncbi_cv_cpp_gnu_varargs" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18269,7 +21633,7 @@
+
+ fi
+
+-ac_ext=cc
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+@@ -18292,8 +21656,8 @@
+ ;;
+ esac
+
+-echo "$as_me:$LINENO: checking syntax for marking deprecated functions" >&5
+-echo $ECHO_N "checking syntax for marking deprecated functions... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking syntax for marking deprecated functions" >&5
++echo $ECHO_N "checking syntax for marking deprecated functions... $ECHO_C" >&6; }
+ if test "${ncbi_cv_c_deprecation_syntax+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18313,24 +21677,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18341,10 +21717,11 @@
+
+ ncbi_cv_c_deprecation_syntax=none
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_c_deprecation_syntax" >&5
+-echo "${ECHO_T}$ncbi_cv_c_deprecation_syntax" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_c_deprecation_syntax" >&5
++echo "${ECHO_T}$ncbi_cv_c_deprecation_syntax" >&6; }
+ depr=$ncbi_cv_c_deprecation_syntax
+ test "$depr" = "none" && depr=""
+
+@@ -18359,8 +21736,8 @@
+ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+-echo "$as_me:$LINENO: checking how to force inlining" >&5
+-echo $ECHO_N "checking how to force inlining... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking how to force inlining" >&5
++echo $ECHO_N "checking how to force inlining... $ECHO_C" >&6; }
+ if test "${ncbi_cv_c_forceinline+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18377,24 +21754,36 @@
+ $fi int f(void) { return 0; }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18403,12 +21792,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_c_forceinline" >&5
+-echo "${ECHO_T}$ncbi_cv_c_forceinline" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_c_forceinline" >&5
++echo "${ECHO_T}$ncbi_cv_c_forceinline" >&6; }
+ forceinline=$ncbi_cv_c_forceinline
+ test "$forceinline" = "no" && forceinline=""
+
+@@ -18417,8 +21808,8 @@
+ _ACEOF
+
+
+-echo "$as_me:$LINENO: checking whether the C compiler supports __attribute__((destructor))" >&5
+-echo $ECHO_N "checking whether the C compiler supports __attribute__((destructor))... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether the C compiler supports __attribute__((destructor))" >&5
++echo $ECHO_N "checking whether the C compiler supports __attribute__((destructor))... $ECHO_C" >&6; }
+ if test "${ncbi_cv_c_attribute_destructor+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18438,24 +21829,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18466,10 +21869,11 @@
+
+ ncbi_cv_c_attribute_destructor=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_destructor" >&5
+-echo "${ECHO_T}$ncbi_cv_c_attribute_destructor" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_destructor" >&5
++echo "${ECHO_T}$ncbi_cv_c_attribute_destructor" >&6; }
+ if test $ncbi_cv_c_attribute_destructor = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18483,8 +21887,8 @@
+ * ) ncbi_cv_c_attribute_visibility_default=unnecessary ;;
+ esac
+
+-echo "$as_me:$LINENO: checking whether $CC supports __attribute__((visibility(\"default\")))" >&5
+-echo $ECHO_N "checking whether $CC supports __attribute__((visibility(\"default\")))... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether $CC supports __attribute__((visibility(\"default\")))" >&5
++echo $ECHO_N "checking whether $CC supports __attribute__((visibility(\"default\")))... $ECHO_C" >&6; }
+ if test "${ncbi_cv_c_attribute_visibility_default+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18504,24 +21908,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18532,10 +21948,11 @@
+
+ ncbi_cv_c_attribute_visibility_default=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_visibility_default" >&5
+-echo "${ECHO_T}$ncbi_cv_c_attribute_visibility_default" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_visibility_default" >&5
++echo "${ECHO_T}$ncbi_cv_c_attribute_visibility_default" >&6; }
+ if test $ncbi_cv_c_attribute_visibility_default = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18544,13 +21961,13 @@
+
+ fi
+
+-echo "$as_me:$LINENO: checking whether the C compiler supports C99 restrict" >&5
+-echo $ECHO_N "checking whether the C compiler supports C99 restrict... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether the C compiler supports C99 restrict" >&5
++echo $ECHO_N "checking whether the C compiler supports C99 restrict... $ECHO_C" >&6; }
+ if test "${ncbi_cv_c_restrict+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ncbi_cv_c_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_c_restrict" = "no" || break
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -18561,24 +21978,36 @@
+ void f(int * $restrict p);
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18587,12 +22016,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_c_restrict" >&5
+-echo "${ECHO_T}$ncbi_cv_c_restrict" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_c_restrict" >&5
++echo "${ECHO_T}$ncbi_cv_c_restrict" >&6; }
+ restrict=$ncbi_cv_c_restrict
+ test "$restrict" = "no" && restrict=""
+
+@@ -18607,20 +22038,20 @@
+ _ACEOF
+
+ fi
+-ac_ext=cc
++ac_ext=cpp
+ ac_cpp='$CXXCPP $CPPFLAGS'
+ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+-echo "$as_me:$LINENO: checking whether the C++ compiler supports C99 restrict" >&5
+-echo $ECHO_N "checking whether the C++ compiler supports C99 restrict... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether the C++ compiler supports C99 restrict" >&5
++echo $ECHO_N "checking whether the C++ compiler supports C99 restrict... $ECHO_C" >&6; }
+ if test "${ncbi_cv_cxx_restrict+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ncbi_cv_cxx_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_cxx_restrict" = "no" || break
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -18631,24 +22062,36 @@
+ void f(int * $restrict p);
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18657,12 +22100,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_cxx_restrict" >&5
+-echo "${ECHO_T}$ncbi_cv_cxx_restrict" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_cxx_restrict" >&5
++echo "${ECHO_T}$ncbi_cv_cxx_restrict" >&6; }
+ restrict=$ncbi_cv_cxx_restrict
+ test "$restrict" = "no" && restrict=""
+
+@@ -18678,8 +22123,8 @@
+
+ fi
+
+-echo "$as_me:$LINENO: checking syntax for marking functions that never return" >&5
+-echo $ECHO_N "checking syntax for marking functions that never return... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking syntax for marking functions that never return" >&5
++echo $ECHO_N "checking syntax for marking functions that never return... $ECHO_C" >&6; }
+ if test "${ncbi_cv_c_noreturn+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18699,24 +22144,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18727,10 +22184,11 @@
+
+ ncbi_cv_c_noreturn=none
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_c_noreturn" >&5
+-echo "${ECHO_T}$ncbi_cv_c_noreturn" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_c_noreturn" >&5
++echo "${ECHO_T}$ncbi_cv_c_noreturn" >&6; }
+ noret=$ncbi_cv_c_noreturn
+ test "$noret" = "none" && noret=""
+
+@@ -18739,8 +22197,8 @@
+ _ACEOF
+
+
+-echo "$as_me:$LINENO: checking syntax for declaring thread-local variables" >&5
+-echo $ECHO_N "checking syntax for declaring thread-local variables... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking syntax for declaring thread-local variables" >&5
++echo $ECHO_N "checking syntax for declaring thread-local variables... $ECHO_C" >&6; }
+ if test "${ncbi_cv_c_tls_var+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18763,24 +22221,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18789,12 +22259,14 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_c_tls_var" >&5
+-echo "${ECHO_T}$ncbi_cv_c_tls_var" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_c_tls_var" >&5
++echo "${ECHO_T}$ncbi_cv_c_tls_var" >&6; }
+ tls_var=$ncbi_cv_c_tls_var
+ if test "$tls_var" != "none"; then
+
+@@ -18805,8 +22277,8 @@
+ fi
+
+ # for FreeTDS
+-echo "$as_me:$LINENO: checking whether FIONBIO requires BSD_COMP to be defined" >&5
+-echo $ECHO_N "checking whether FIONBIO requires BSD_COMP to be defined... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether FIONBIO requires BSD_COMP to be defined" >&5
++echo $ECHO_N "checking whether FIONBIO requires BSD_COMP to be defined... $ECHO_C" >&6; }
+ if test "${ncbi_cv_decl_fionbio_needs_bsd_comp+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18827,24 +22299,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18871,24 +22355,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18899,12 +22395,14 @@
+
+ ncbi_cv_decl_fionbio_needs_bsd_comp="never defined at all"
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_decl_fionbio_needs_bsd_comp" >&5
+-echo "${ECHO_T}$ncbi_cv_decl_fionbio_needs_bsd_comp" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_decl_fionbio_needs_bsd_comp" >&5
++echo "${ECHO_T}$ncbi_cv_decl_fionbio_needs_bsd_comp" >&6; }
+ if test "$ncbi_cv_decl_fionbio_needs_bsd_comp" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18913,8 +22411,8 @@
+
+ fi
+
+-echo "$as_me:$LINENO: checking whether INADDR_NONE is defined" >&5
+-echo $ECHO_N "checking whether INADDR_NONE is defined... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether INADDR_NONE is defined" >&5
++echo $ECHO_N "checking whether INADDR_NONE is defined... $ECHO_C" >&6; }
+ if test "${ncbi_cv_decl_inaddr_none+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -18947,24 +22445,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -18975,10 +22485,11 @@
+
+ ncbi_cv_decl_inaddr_none=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_decl_inaddr_none" >&5
+-echo "${ECHO_T}$ncbi_cv_decl_inaddr_none" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_decl_inaddr_none" >&5
++echo "${ECHO_T}$ncbi_cv_decl_inaddr_none" >&6; }
+ if test "$ncbi_cv_decl_inaddr_none" != yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -18987,8 +22498,8 @@
+
+ fi
+
+-echo "$as_me:$LINENO: checking whether unaligned reads are permissible" >&5
+-echo $ECHO_N "checking whether unaligned reads are permissible... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether unaligned reads are permissible" >&5
++echo $ECHO_N "checking whether unaligned reads are permissible... $ECHO_C" >&6; }
+ if test "${ncbi_cv_sys_unaligned_reads+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -19015,13 +22526,22 @@
+ }
+ _ACEOF
+ rm -f conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>&5
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19034,76 +22554,17 @@
+ ( exit $ac_status )
+ ncbi_cv_sys_unaligned_reads=no
+ fi
+-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+-fi
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_sys_unaligned_reads" >&5
+-echo "${ECHO_T}$ncbi_cv_sys_unaligned_reads" >&6
+-if test "$ncbi_cv_sys_unaligned_reads" = yes; then
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_UNALIGNED_READS 1
+-_ACEOF
+-
++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+ fi
+
+-echo "$as_me:$LINENO: checking whether $CXX supports C++0x nullptr" >&5
+-echo $ECHO_N "checking whether $CXX supports C++0x nullptr... $ECHO_C" >&6
+-if test "${ncbi_cv_cxx_nullptr+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-
+-int
+-main ()
+-{
+-void * p = nullptr;
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_cxx_nullptr=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_cxx_nullptr=no
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_cxx_nullptr" >&5
+-echo "${ECHO_T}$ncbi_cv_cxx_nullptr" >&6
+-if test "$ncbi_cv_cxx_nullptr" = yes; then
++{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_unaligned_reads" >&5
++echo "${ECHO_T}$ncbi_cv_sys_unaligned_reads" >&6; }
++if test "$ncbi_cv_sys_unaligned_reads" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_NULLPTR 1
++#define HAVE_UNALIGNED_READS 1
+ _ACEOF
+
+ fi
+@@ -19112,23 +22573,23 @@
+ ### --------------------------------------------
+
+
+-echo "$as_me:$LINENO: checking whether in-house NCBI resources are available" >&5
+-echo $ECHO_N "checking whether in-house NCBI resources are available... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking whether in-house NCBI resources are available" >&5
++echo $ECHO_N "checking whether in-house NCBI resources are available... $ECHO_C" >&6; }
+ if test -n "$orig_NCBI" -a -f "$orig_NCBI/.ncbirc" \
+ -a -d /am/coremake_builds/test_data; \
+ then
+ WithFeatures="$WithFeatures${WithFeaturesSep}in-house-resources"; WithFeaturesSep=" "
+- echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
+ ### Common-use system and miscellaneous libs
+ if test -z "${NETWORK_LIBS+set}"; then
+- echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
+-echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
++echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -19141,40 +22602,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char gethostbyname ();
+ int
+ main ()
+ {
+-gethostbyname ();
++return gethostbyname ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19185,20 +22658,21 @@
+
+ ac_cv_lib_nsl_gethostbyname=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
+-echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
++echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6; }
+ if test $ac_cv_lib_nsl_gethostbyname = yes; then
+ libnsl=-lnsl
+ else
+ libnsl=
+ fi
+
+- echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
+-echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
++echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_socket_connect+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -19211,40 +22685,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char connect ();
+ int
+ main ()
+ {
+-connect ();
++return connect ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19255,12 +22741,13 @@
+
+ ac_cv_lib_socket_connect=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
+-echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
++echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6; }
+ if test $ac_cv_lib_socket_connect = yes; then
+ NETWORK_LIBS="-lsocket $libnsl"
+ else
+@@ -19268,8 +22755,8 @@
+ fi
+
+ fi
+-echo "$as_me:$LINENO: checking for res_search in -lresolv" >&5
+-echo $ECHO_N "checking for res_search in -lresolv... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for res_search in -lresolv" >&5
++echo $ECHO_N "checking for res_search in -lresolv... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_resolv_res_search+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -19292,24 +22779,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19320,12 +22819,13 @@
+
+ ac_cv_lib_resolv_res_search=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$orig_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_resolv_res_search" >&5
+-echo "${ECHO_T}$ac_cv_lib_resolv_res_search" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_resolv_res_search" >&5
++echo "${ECHO_T}$ac_cv_lib_resolv_res_search" >&6; }
+ if test "$ac_cv_lib_resolv_res_search" = "yes"; then
+ RESOLVER_LIBS=-lresolv
+ else
+@@ -19338,9 +22838,9 @@
+ for ac_func in inet_ntoa_r
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -19366,53 +22866,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19423,11 +22929,13 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+@@ -19436,8 +22944,8 @@
+ fi
+ done
+
+-echo "$as_me:$LINENO: checking for getaddrinfo" >&5
+-echo $ECHO_N "checking for getaddrinfo... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for getaddrinfo" >&5
++echo $ECHO_N "checking for getaddrinfo... $ECHO_C" >&6; }
+ if test "${ac_cv_func_getaddrinfo+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -19457,24 +22965,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19485,19 +23005,20 @@
+
+ ac_cv_func_getaddrinfo=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func_getaddrinfo" >&5
+-echo "${ECHO_T}$ac_cv_func_getaddrinfo" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_func_getaddrinfo" >&5
++echo "${ECHO_T}$ac_cv_func_getaddrinfo" >&6; }
+ test "$ac_cv_func_getaddrinfo" = "yes" && \
+
+ cat >>confdefs.h <<\_ACEOF
+ #define HAVE_GETADDRINFO 1
+ _ACEOF
+
+-echo "$as_me:$LINENO: checking for getnameinfo" >&5
+-echo $ECHO_N "checking for getnameinfo... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for getnameinfo" >&5
++echo $ECHO_N "checking for getnameinfo... $ECHO_C" >&6; }
+ if test "${ac_cv_func_getnameinfo+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -19520,24 +23041,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19548,11 +23081,12 @@
+
+ ac_cv_func_getnameinfo=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func_getnameinfo" >&5
+-echo "${ECHO_T}$ac_cv_func_getnameinfo" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_func_getnameinfo" >&5
++echo "${ECHO_T}$ac_cv_func_getnameinfo" >&6; }
+ test "$ac_cv_func_getnameinfo" = "yes" && \
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -19568,9 +23102,9 @@
+ inet_ntop
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -19596,53 +23130,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19653,11 +23193,13 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+@@ -19680,9 +23222,9 @@
+ for ac_func in erf
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -19708,53 +23250,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -19765,11 +23313,13 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+@@ -19780,13 +23330,12 @@
+
+
+ saved_LIBS=$LIBS
+- echo "$as_me:$LINENO: checking for library containing kstat_open" >&5
+-echo $ECHO_N "checking for library containing kstat_open... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for library containing kstat_open" >&5
++echo $ECHO_N "checking for library containing kstat_open... $ECHO_C" >&6; }
+ if test "${ac_cv_search_kstat_open+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_kstat_open=no
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -19794,54 +23343,106 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char kstat_open ();
+ int
+ main ()
+ {
+-kstat_open ();
++return kstat_open ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' "$KSTAT_LIBS" kstat; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_kstat_open="none required"
++ ac_cv_search_kstat_open=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_kstat_open" = no; then
+- for ac_lib in "$KSTAT_LIBS" kstat; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_kstat_open+set}" = set; then
++ break
++fi
++done
++if test "${ac_cv_search_kstat_open+set}" = set; then
++ :
++else
++ ac_cv_search_kstat_open=no
++fi
++rm conftest.$ac_ext
++LIBS=$ac_func_search_save_LIBS
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_search_kstat_open" >&5
++echo "${ECHO_T}$ac_cv_search_kstat_open" >&6; }
++ac_res=$ac_cv_search_kstat_open
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBKSTAT 1
++_ACEOF
++
++ test "x$ac_cv_search_kstat_open" = "xnone required" || KSTAT_LIBS=$ac_cv_search_kstat_open
++fi
++
++ LIBS=$saved_LIBS
++
++saved_LIBS=$LIBS
++ { echo "$as_me:$LINENO: checking for library containing rstat" >&5
++echo $ECHO_N "checking for library containing rstat... $ECHO_C" >&6; }
++if test "${ac_cv_search_rstat+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_func_search_save_LIBS=$LIBS
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -19849,78 +23450,114 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char kstat_open ();
++char rstat ();
+ int
+ main ()
+ {
+-kstat_open ();
++return rstat ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' "$RPCSVC_LIBS" rpcsvc; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_kstat_open="-l$ac_lib"
+-break
++ ac_cv_search_rstat=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_rstat+set}" = set; then
++ break
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+ done
++if test "${ac_cv_search_rstat+set}" = set; then
++ :
++else
++ ac_cv_search_rstat=no
+ fi
++rm conftest.$ac_ext
+ LIBS=$ac_func_search_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_kstat_open" >&5
+-echo "${ECHO_T}$ac_cv_search_kstat_open" >&6
+-if test "$ac_cv_search_kstat_open" != no; then
+- test "$ac_cv_search_kstat_open" = "none required" || LIBS="$ac_cv_search_kstat_open $LIBS"
++{ echo "$as_me:$LINENO: result: $ac_cv_search_rstat" >&5
++echo "${ECHO_T}$ac_cv_search_rstat" >&6; }
++ac_res=$ac_cv_search_rstat
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBKSTAT 1
++#define HAVE_LIBRPCSVC 1
+ _ACEOF
+
+- test "x$ac_cv_search_kstat_open" = "xnone required" || KSTAT_LIBS=$ac_cv_search_kstat_open
++ test "x$ac_cv_search_rstat" = "xnone required" || RPCSVC_LIBS=$ac_cv_search_rstat
+ fi
+
+ LIBS=$saved_LIBS
+
++ac_ext=c
++ac_cpp='$CPP $CPPFLAGS'
++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_c_compiler_gnu
++
++# Force C for this test because Sun WorkShop otherwise complains about
++# multiple extern "C" declarations of setkey.
+ saved_LIBS=$LIBS
+- echo "$as_me:$LINENO: checking for library containing rstat" >&5
+-echo $ECHO_N "checking for library containing rstat... $ECHO_C" >&6
+-if test "${ac_cv_search_rstat+set}" = set; then
++ { echo "$as_me:$LINENO: checking for library containing setkey" >&5
++echo $ECHO_N "checking for library containing setkey... $ECHO_C" >&6; }
++if test "${ac_cv_search_setkey+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_rstat=no
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -19928,54 +23565,116 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char rstat ();
++char setkey ();
+ int
+ main ()
+ {
+-rstat ();
++return setkey ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' "$CRYPT_LIBS" crypt crypt_i; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_rstat="none required"
++ ac_cv_search_setkey=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_rstat" = no; then
+- for ac_lib in "$RPCSVC_LIBS" rpcsvc; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_setkey+set}" = set; then
++ break
++fi
++done
++if test "${ac_cv_search_setkey+set}" = set; then
++ :
++else
++ ac_cv_search_setkey=no
++fi
++rm conftest.$ac_ext
++LIBS=$ac_func_search_save_LIBS
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_search_setkey" >&5
++echo "${ECHO_T}$ac_cv_search_setkey" >&6; }
++ac_res=$ac_cv_search_setkey
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBCRYPT 1
++_ACEOF
++
++ test "x$ac_cv_search_setkey" = "xnone required" || CRYPT_LIBS=$ac_cv_search_setkey
++fi
++
++ LIBS=$saved_LIBS
++
++ac_ext=cpp
++ac_cpp='$CXXCPP $CPPFLAGS'
++ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
++
++case "$host_os:$compiler" in
++ solaris*:GCC ) ac_cv_search_dlopen="-ldl" ;;
++ darwin* ) ac_cv_search_iconv="-liconv" ;;
++esac
++saved_LIBS=$LIBS
++ { echo "$as_me:$LINENO: checking for library containing dlopen" >&5
++echo $ECHO_N "checking for library containing dlopen... $ECHO_C" >&6; }
++if test "${ac_cv_search_dlopen+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_func_search_save_LIBS=$LIBS
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -19983,86 +23682,110 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char rstat ();
++char dlopen ();
+ int
+ main ()
+ {
+-rstat ();
++return dlopen ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' "$DL_LIBS" dl; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_rstat="-l$ac_lib"
+-break
++ ac_cv_search_dlopen=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_dlopen+set}" = set; then
++ break
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+ done
++if test "${ac_cv_search_dlopen+set}" = set; then
++ :
++else
++ ac_cv_search_dlopen=no
+ fi
++rm conftest.$ac_ext
+ LIBS=$ac_func_search_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_rstat" >&5
+-echo "${ECHO_T}$ac_cv_search_rstat" >&6
+-if test "$ac_cv_search_rstat" != no; then
+- test "$ac_cv_search_rstat" = "none required" || LIBS="$ac_cv_search_rstat $LIBS"
++{ echo "$as_me:$LINENO: result: $ac_cv_search_dlopen" >&5
++echo "${ECHO_T}$ac_cv_search_dlopen" >&6; }
++ac_res=$ac_cv_search_dlopen
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBRPCSVC 1
++#define HAVE_LIBDL 1
+ _ACEOF
+
+- test "x$ac_cv_search_rstat" = "xnone required" || RPCSVC_LIBS=$ac_cv_search_rstat
++ test "x$ac_cv_search_dlopen" = "xnone required" || DL_LIBS=$ac_cv_search_dlopen
+ fi
+
+ LIBS=$saved_LIBS
+
+-ac_ext=c
+-ac_cpp='$CPP $CPPFLAGS'
+-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+-ac_compiler_gnu=$ac_cv_c_compiler_gnu
+-
+-# Force C for this test because Sun WorkShop otherwise complains about
+-# multiple extern "C" declarations of setkey.
+-saved_LIBS=$LIBS
+- echo "$as_me:$LINENO: checking for library containing setkey" >&5
+-echo $ECHO_N "checking for library containing setkey... $ECHO_C" >&6
+-if test "${ac_cv_search_setkey+set}" = set; then
++# libc's stubs aren't always sufficient...
++case "$host_os:$libnsl" in
++ solaris2.[89]:* ) orig_LIBS="$DL_LIBS $orig_LIBS" ;;
++ solaris*:-lnsl ) NETWORK_LIBS="$NETWORK_LIBS $DL_LIBS" ;;
++esac
++{ echo "$as_me:$LINENO: checking for library containing uuid_generate" >&5
++echo $ECHO_N "checking for library containing uuid_generate... $ECHO_C" >&6; }
++if test "${ac_cv_search_uuid_generate+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_setkey=no
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -20070,54 +23793,101 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char setkey ();
++char uuid_generate ();
+ int
+ main ()
+ {
+-setkey ();
++return uuid_generate ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' uuid; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_setkey="none required"
++ ac_cv_search_uuid_generate=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_setkey" = no; then
+- for ac_lib in "$CRYPT_LIBS" crypt crypt_i; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_uuid_generate+set}" = set; then
++ break
++fi
++done
++if test "${ac_cv_search_uuid_generate+set}" = set; then
++ :
++else
++ ac_cv_search_uuid_generate=no
++fi
++rm conftest.$ac_ext
++LIBS=$ac_func_search_save_LIBS
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_search_uuid_generate" >&5
++echo "${ECHO_T}$ac_cv_search_uuid_generate" >&6; }
++ac_res=$ac_cv_search_uuid_generate
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
++ WithPackages="$WithPackages${WithPackagesSep}UUID"; WithPackagesSep=" "
++ test "x$ac_cv_search_uuid_generate" = "xnone required" || \
++ UUID_LIBS=$ac_cv_search_uuid_generate
++fi
++
++LIBS=$orig_LIBS
++{ echo "$as_me:$LINENO: checking for library containing fuse_loop" >&5
++echo $ECHO_N "checking for library containing fuse_loop... $ECHO_C" >&6; }
++if test "${ac_cv_search_fuse_loop+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_func_search_save_LIBS=$LIBS
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -20125,88 +23895,107 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char setkey ();
++char fuse_loop ();
+ int
+ main ()
+ {
+-setkey ();
++return fuse_loop ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' fuse; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_c_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_setkey="-l$ac_lib"
+-break
++ ac_cv_search_fuse_loop=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_fuse_loop+set}" = set; then
++ break
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+ done
++if test "${ac_cv_search_fuse_loop+set}" = set; then
++ :
++else
++ ac_cv_search_fuse_loop=no
+ fi
++rm conftest.$ac_ext
+ LIBS=$ac_func_search_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_setkey" >&5
+-echo "${ECHO_T}$ac_cv_search_setkey" >&6
+-if test "$ac_cv_search_setkey" != no; then
+- test "$ac_cv_search_setkey" = "none required" || LIBS="$ac_cv_search_setkey $LIBS"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBCRYPT 1
+-_ACEOF
+-
+- test "x$ac_cv_search_setkey" = "xnone required" || CRYPT_LIBS=$ac_cv_search_setkey
++{ echo "$as_me:$LINENO: result: $ac_cv_search_fuse_loop" >&5
++echo "${ECHO_T}$ac_cv_search_fuse_loop" >&6; }
++ac_res=$ac_cv_search_fuse_loop
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
++ WithPackages="$WithPackages${WithPackagesSep}FUSE"; WithPackagesSep=" "
+ fi
+
+- LIBS=$saved_LIBS
+-
+-ac_ext=cc
+-ac_cpp='$CXXCPP $CPPFLAGS'
+-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+-
+-case "$host_os:$compiler" in
+- solaris*:GCC ) ac_cv_search_dlopen="-ldl" ;;
+- darwin* ) ac_cv_search_iconv="-liconv" ;;
+-esac
++LIBS=$orig_LIBS
++# Temporarily drop OpenMP flags for this test, as some toolchains count
++# its support library's indirect use of librt when building applications
++# but not when building shared libraries with --no-undefined.
++orig_CXXFLAGS=$CXXFLAGS
++orig_LDFLAGS=$LDFLAGS
++CXXFLAGS=`echo $CXXFLAGS | sed -e 's/[^ ]*openmp[^ ]*//g'`
++LDFLAGS=`echo $LDFLAGS | sed -e 's/[^ ]*openmp[^ ]*//g'`
+ saved_LIBS=$LIBS
+- echo "$as_me:$LINENO: checking for library containing dlopen" >&5
+-echo $ECHO_N "checking for library containing dlopen... $ECHO_C" >&6
+-if test "${ac_cv_search_dlopen+set}" = set; then
++ { echo "$as_me:$LINENO: checking for library containing clock_gettime" >&5
++echo $ECHO_N "checking for library containing clock_gettime... $ECHO_C" >&6; }
++if test "${ac_cv_search_clock_gettime+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_dlopen=no
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -20214,54 +24003,108 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char dlopen ();
++char clock_gettime ();
+ int
+ main ()
+ {
+-dlopen ();
++return clock_gettime ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' "$RT_LIBS" rt posix4; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_dlopen="none required"
++ ac_cv_search_clock_gettime=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_dlopen" = no; then
+- for ac_lib in "$DL_LIBS" dl; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_clock_gettime+set}" = set; then
++ break
++fi
++done
++if test "${ac_cv_search_clock_gettime+set}" = set; then
++ :
++else
++ ac_cv_search_clock_gettime=no
++fi
++rm conftest.$ac_ext
++LIBS=$ac_func_search_save_LIBS
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_search_clock_gettime" >&5
++echo "${ECHO_T}$ac_cv_search_clock_gettime" >&6; }
++ac_res=$ac_cv_search_clock_gettime
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBRT 1
++_ACEOF
++
++ test "x$ac_cv_search_clock_gettime" = "xnone required" || RT_LIBS=$ac_cv_search_clock_gettime
++fi
++
++ LIBS=$saved_LIBS
++
++CXXFLAGS=$orig_CXXFLAGS
++LDFLAGS=$orig_LDFLAGS
++saved_LIBS=$LIBS
++ { echo "$as_me:$LINENO: checking for library containing cplus_demangle" >&5
++echo $ECHO_N "checking for library containing cplus_demangle... $ECHO_C" >&6; }
++if test "${ac_cv_search_cplus_demangle+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_func_search_save_LIBS=$LIBS
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -20269,1369 +24112,1910 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char dlopen ();
++char cplus_demangle ();
+ int
+ main ()
+ {
+-dlopen ();
++return cplus_demangle ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' "$DEMANGLE_LIBS" demangle; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_dlopen="-l$ac_lib"
+-break
++ ac_cv_search_cplus_demangle=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_cplus_demangle+set}" = set; then
++ break
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+ done
++if test "${ac_cv_search_cplus_demangle+set}" = set; then
++ :
++else
++ ac_cv_search_cplus_demangle=no
+ fi
++rm conftest.$ac_ext
+ LIBS=$ac_func_search_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_dlopen" >&5
+-echo "${ECHO_T}$ac_cv_search_dlopen" >&6
+-if test "$ac_cv_search_dlopen" != no; then
+- test "$ac_cv_search_dlopen" = "none required" || LIBS="$ac_cv_search_dlopen $LIBS"
++{ echo "$as_me:$LINENO: result: $ac_cv_search_cplus_demangle" >&5
++echo "${ECHO_T}$ac_cv_search_cplus_demangle" >&6; }
++ac_res=$ac_cv_search_cplus_demangle
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBDL 1
++#define HAVE_LIBDEMANGLE 1
+ _ACEOF
+
+- test "x$ac_cv_search_dlopen" = "xnone required" || DL_LIBS=$ac_cv_search_dlopen
++ test "x$ac_cv_search_cplus_demangle" = "xnone required" || DEMANGLE_LIBS=$ac_cv_search_cplus_demangle
+ fi
+
+ LIBS=$saved_LIBS
+
+-# libc's stubs aren't always sufficient...
+-case "$host_os:$libnsl" in
+- solaris2.[89]:* ) orig_LIBS="$DL_LIBS $orig_LIBS" ;;
+- solaris*:-lnsl ) NETWORK_LIBS="$NETWORK_LIBS $DL_LIBS" ;;
+-esac
+-echo "$as_me:$LINENO: checking for library containing uuid_generate" >&5
+-echo $ECHO_N "checking for library containing uuid_generate... $ECHO_C" >&6
+-if test "${ac_cv_search_uuid_generate+set}" = set; then
++# Add to (orig_)LIBS if present for the sake of corelib and the
++# following call to AC_CHECK_FUNCS.
++if test -n "$DEMANGLE_LIBS$RT_LIBS"; then
++ LIBS="$DEMANGLE_LIBS $RT_LIBS $LIBS"
++ orig_LIBS="$DEMANGLE_LIBS $RT_LIBS $orig_LIBS"
++fi
++
++
++for ac_func in nanosleep sched_yield
++do
++as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_uuid_generate=no
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
++/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
++ For example, HP-UX 11i <limits.h> declares gettimeofday. */
++#define $ac_func innocuous_$ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
++/* System header to define __stub macros and hopefully few prototypes,
++ which can conflict with char $ac_func (); below.
++ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
++ <limits.h> exists even on freestanding compilers. */
++
++#ifdef __STDC__
++# include <limits.h>
++#else
++# include <assert.h>
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char uuid_generate ();
+-int
+-main ()
+-{
+-uuid_generate ();
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ac_cv_search_uuid_generate="none required"
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_uuid_generate" = no; then
+- for ac_lib in uuid; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
++#undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char uuid_generate ();
++char $ac_func ();
++/* The GNU C library defines this for functions which it implements
++ to always fail with ENOSYS. Some functions are actually named
++ something starting with __ and the normal name is an alias. */
++#if defined __stub_$ac_func || defined __stub___$ac_func
++choke me
++#endif
++
+ int
+ main ()
+ {
+-uuid_generate ();
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_uuid_generate="-l$ac_lib"
+-break
++ eval "$as_ac_var=yes"
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+- done
+-fi
+-LIBS=$ac_func_search_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_uuid_generate" >&5
+-echo "${ECHO_T}$ac_cv_search_uuid_generate" >&6
+-if test "$ac_cv_search_uuid_generate" != no; then
+- test "$ac_cv_search_uuid_generate" = "none required" || LIBS="$ac_cv_search_uuid_generate $LIBS"
+- WithPackages="$WithPackages${WithPackagesSep}UUID"; WithPackagesSep=" "
+- test "x$ac_cv_search_uuid_generate" = "xnone required" || \
+- UUID_LIBS=$ac_cv_search_uuid_generate
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
++if test `eval echo '${'$as_ac_var'}'` = yes; then
++ cat >>confdefs.h <<_ACEOF
++#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
++_ACEOF
++
+ fi
++done
+
+-LIBS=$orig_LIBS
+-echo "$as_me:$LINENO: checking for library containing fuse_loop" >&5
+-echo $ECHO_N "checking for library containing fuse_loop... $ECHO_C" >&6
+-if test "${ac_cv_search_fuse_loop+set}" = set; then
++
++# We need to include <iconv.h>, since some implementations rename the symbols.
++# This logic adapted from Bruno Haible's iconv.m4.
++{ echo "$as_me:$LINENO: checking for library containing iconv" >&5
++echo $ECHO_N "checking for library containing iconv... $ECHO_C" >&6; }
++if test "${ac_cv_search_iconv+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_fuse_loop=no
++
++ ac_cv_search_iconv=no
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char fuse_loop ();
++#include <stdlib.h>
++ #include <iconv.h>
+ int
+ main ()
+ {
+-fuse_loop ();
++iconv_t cd = iconv_open("","");
++ iconv(cd,NULL,NULL,NULL,NULL);
++ iconv_close(cd);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_fuse_loop="none required"
++ ac_cv_search_iconv="none required"
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_fuse_loop" = no; then
+- for ac_lib in fuse; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ if test "$ac_cv_search_iconv" != "none required"; then
++ for l in iconv; do
++ LIBS="-l$l $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char fuse_loop ();
++#include <stdlib.h>
++ #include <iconv.h>
+ int
+ main ()
+ {
+-fuse_loop ();
++iconv_t cd = iconv_open("","");
++ iconv(cd,NULL,NULL,NULL,NULL);
++ iconv_close(cd);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_fuse_loop="-l$ac_lib"
+-break
++ ac_cv_search_iconv=-l$l
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
++ LIBS="$orig_LIBS"
+ done
+ fi
+-LIBS=$ac_func_search_save_LIBS
+-fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_fuse_loop" >&5
+-echo "${ECHO_T}$ac_cv_search_fuse_loop" >&6
+-if test "$ac_cv_search_fuse_loop" != no; then
+- test "$ac_cv_search_fuse_loop" = "none required" || LIBS="$ac_cv_search_fuse_loop $LIBS"
+- WithPackages="$WithPackages${WithPackagesSep}FUSE"; WithPackagesSep=" "
+ fi
++{ echo "$as_me:$LINENO: result: $ac_cv_search_iconv" >&5
++echo "${ECHO_T}$ac_cv_search_iconv" >&6; }
++if test "x$ac_cv_search_iconv" != xno; then
+
+-LIBS=$orig_LIBS
+-saved_LIBS=$LIBS
+- echo "$as_me:$LINENO: checking for library containing clock_gettime" >&5
+-echo $ECHO_N "checking for library containing clock_gettime... $ECHO_C" >&6
+-if test "${ac_cv_search_clock_gettime+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_clock_gettime=no
+-cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBICONV 1
+ _ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char clock_gettime ();
+-int
+-main ()
+-{
+-clock_gettime ();
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ac_cv_search_clock_gettime="none required"
++ { echo "$as_me:$LINENO: checking for iconv declaration" >&5
++echo $ECHO_N "checking for iconv declaration... $ECHO_C" >&6; }
++ if test "${am_cv_proto_iconv+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_clock_gettime" = no; then
+- for ac_lib in "$RT_LIBS" rt posix4; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++#include <stdlib.h>
++#include <iconv.h>
++extern
+ #ifdef __cplusplus
+-extern "C"
++"C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char clock_gettime ();
+-int
+-main ()
+-{
+-clock_gettime ();
+- ;
+- return 0;
+-}
++#if defined(__STDC__) || defined(__cplusplus)
++size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
++#else
++size_t iconv();
++#endif
++
+ _ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++rm -f conftest.$ac_objext
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -s conftest.$ac_objext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_clock_gettime="-l$ac_lib"
+-break
++ am_cv_proto_iconv_arg1=""
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++ am_cv_proto_iconv_arg1="const"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+- done
+-fi
+-LIBS=$ac_func_search_save_LIBS
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ am_cv_proto_iconv="extern size_t iconv (iconv_t cd, $am_cv_proto_iconv_arg1 char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);"
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_clock_gettime" >&5
+-echo "${ECHO_T}$ac_cv_search_clock_gettime" >&6
+-if test "$ac_cv_search_clock_gettime" != no; then
+- test "$ac_cv_search_clock_gettime" = "none required" || LIBS="$ac_cv_search_clock_gettime $LIBS"
+
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBRT 1
+-_ACEOF
++ am_cv_proto_iconv=`echo "$am_cv_proto_iconv" | tr -s ' ' | sed -e 's/( /(/'`
++ { echo "$as_me:$LINENO: result: ${ac_t:-
++ }$am_cv_proto_iconv" >&5
++echo "${ECHO_T}${ac_t:-
++ }$am_cv_proto_iconv" >&6; }
+
+- test "x$ac_cv_search_clock_gettime" = "xnone required" || RT_LIBS=$ac_cv_search_clock_gettime
++cat >>confdefs.h <<_ACEOF
++#define ICONV_CONST $am_cv_proto_iconv_arg1
++_ACEOF
++
++ if test "x$ac_cv_search_iconv" != "xnone required"; then
++ ICONV_LIBS=$ac_cv_search_iconv
++ fi
+ fi
+
+- LIBS=$saved_LIBS
+
+-saved_LIBS=$LIBS
+- echo "$as_me:$LINENO: checking for library containing cplus_demangle" >&5
+-echo $ECHO_N "checking for library containing cplus_demangle... $ECHO_C" >&6
+-if test "${ac_cv_search_cplus_demangle+set}" = set; then
++### Third-party libraries
++
++usr_lib='[/usr]*/lib/*[amdsprcv]*[23469]*'
++no_usr_lib="s,-L$usr_lib ,,g;"
++
++if test "$with_z" != "no"; then
++ case "$with_z" in
++ yes | "" ) ;;
++ * ) Z_PATH=$with_z ;;
++ esac
++ if test -d "$Z_PATH"; then
++ in_path=" in $Z_PATH"
++ if test -z "$Z_INCLUDE" -a -d "$Z_PATH/include"; then
++ Z_INCLUDE="-I$Z_PATH/include"
++ fi
++ if test -n "$Z_LIBPATH"; then
++ :
++ elif test -d "$Z_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $Z_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ Z_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $Z_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ elif test -d "$Z_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $Z_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ Z_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $Z_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ Z_LIBS="$Z_LIBPATH -lz "
++ else
++ Z_INCLUDE=""
++ Z_LIBS="-lz "
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for libz$in_path" >&5
++echo $ECHO_N "checking for libz$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_z+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_cplus_demangle=no
++ CPPFLAGS=" $Z_INCLUDE $orig_CPPFLAGS"
++ LIBS="$Z_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char cplus_demangle ();
++#include <zlib.h>
+ int
+ main ()
+ {
+-cplus_demangle ();
++gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf))
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_cplus_demangle="none required"
++ ncbi_cv_lib_z=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++ ncbi_cv_lib_z=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_cplus_demangle" = no; then
+- for ac_lib in "$DEMANGLE_LIBS" demangle; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_z" >&5
++echo "${ECHO_T}$ncbi_cv_lib_z" >&6; }
++ if test "$ncbi_cv_lib_z" = "no"; then
++ if test "${with_z:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-z explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-z explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ fi
++ fi
++ if test "$with_z" = "no"; then
++ Z_PATH="No_Z"
++ Z_INCLUDE=
++ Z_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
++ Z_INCLUDE=" $Z_INCLUDE"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBZ 1
++_ACEOF
++
++ fi
++
++
++
++if test -z "$Z_LIBS"; then
++ zlocal=util/compress/zlib
++ { echo "$as_me:$LINENO: using local zlib copy in $zlocal" >&5
++echo "$as_me: using local zlib copy in $zlocal" >&6;}
++ Z_PATH="<$zlocal>"
++ Z_INCLUDE="-I\$(includedir)/$zlocal -I\$(includedir0)/$zlocal"
++ # Z_LIBS="-lz"
++ Z_LIB="z"
++ # AC_DEFINE(USE_LOCAL_ZLIB, 1, [Define to 1 if using a local copy of zlib.])
++ WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
++ WithPackages="$WithPackages${WithPackagesSep}LocalZ"; WithPackagesSep=" "
++fi
++
++if test "$with_bz2" != "no"; then
++ case "$with_bz2" in
++ yes | "" ) ;;
++ * ) BZ2_PATH=$with_bz2 ;;
++ esac
++ if test -d "$BZ2_PATH"; then
++ in_path=" in $BZ2_PATH"
++ if test -z "$BZ2_INCLUDE" -a -d "$BZ2_PATH/include"; then
++ BZ2_INCLUDE="-I$BZ2_PATH/include"
++ fi
++ if test -n "$BZ2_LIBPATH"; then
++ :
++ elif test -d "$BZ2_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $BZ2_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ BZ2_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $BZ2_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ elif test -d "$BZ2_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $BZ2_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ BZ2_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $BZ2_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ BZ2_LIBS="$BZ2_LIBPATH -lbz2 "
++ else
++ BZ2_INCLUDE=""
++ BZ2_LIBS="-lbz2 "
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for libbz2$in_path" >&5
++echo $ECHO_N "checking for libbz2$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_bz2+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ CPPFLAGS=" $BZ2_INCLUDE $orig_CPPFLAGS"
++ LIBS="$BZ2_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char cplus_demangle ();
++#include <bzlib.h>
+ int
+ main ()
+ {
+-cplus_demangle ();
++BZFILE* fp; char buf[1024]; int err;
++ int n = BZ2_bzRead(&err, fp, buf, sizeof(buf))
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_cplus_demangle="-l$ac_lib"
+-break
++ ncbi_cv_lib_bz2=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++ ncbi_cv_lib_bz2=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+- done
+ fi
+-LIBS=$ac_func_search_save_LIBS
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_bz2" >&5
++echo "${ECHO_T}$ncbi_cv_lib_bz2" >&6; }
++ if test "$ncbi_cv_lib_bz2" = "no"; then
++ if test "${with_bz2:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-bz2 explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-bz2 explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_cplus_demangle" >&5
+-echo "${ECHO_T}$ac_cv_search_cplus_demangle" >&6
+-if test "$ac_cv_search_cplus_demangle" != no; then
+- test "$ac_cv_search_cplus_demangle" = "none required" || LIBS="$ac_cv_search_cplus_demangle $LIBS"
++ fi
++ if test "$with_bz2" = "no"; then
++ BZ2_PATH="No_BZ2"
++ BZ2_INCLUDE=
++ BZ2_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
++ BZ2_INCLUDE=" $BZ2_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBDEMANGLE 1
++#define HAVE_LIBBZ2 1
+ _ACEOF
+
+- test "x$ac_cv_search_cplus_demangle" = "xnone required" || DEMANGLE_LIBS=$ac_cv_search_cplus_demangle
+ fi
+
+- LIBS=$saved_LIBS
+
+-# Add to (orig_)LIBS if present for the sake of corelib and the
+-# following call to AC_CHECK_FUNCS.
+-if test -n "$DEMANGLE_LIBS$RT_LIBS"; then
+- LIBS="$DEMANGLE_LIBS $RT_LIBS $LIBS"
+- orig_LIBS="$DEMANGLE_LIBS $RT_LIBS $orig_LIBS"
+-fi
+
++if test -z "$BZ2_LIBS"; then
++ bzlocal=util/compress/bzip2
++ { echo "$as_me:$LINENO: using local bzlib copy in $bzlocal" >&5
++echo "$as_me: using local bzlib copy in $bzlocal" >&6;}
++ BZ2_PATH="<$bzlocal>"
++ BZ2_INCLUDE="-I\$(includedir)/$bzlocal -I\$(includedir0)/$bzlocal"
++ # BZ2_LIBS="-lbz2"
++ BZ2_LIB="bz2"
+
+-for ac_func in nanosleep sched_yield
+-do
+-as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++cat >>confdefs.h <<\_ACEOF
++#define USE_LOCAL_BZLIB 1
++_ACEOF
++
++ WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
++ WithPackages="$WithPackages${WithPackagesSep}LocalBZ2"; WithPackagesSep=" "
++fi
++
++if test -d "$LZO_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $LZO_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $LZO_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ LZO_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$LZO_PATH" in
++ /*) ;;
++ * ) LZO_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) LZO_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++fi
++if test "$with_lzo" != "no"; then
++ case "$with_lzo" in
++ yes | "" ) ;;
++ * ) LZO_PATH=$with_lzo ;;
++ esac
++ if test -d "$LZO_PATH"; then
++ in_path=" in $LZO_PATH"
++ if test -z "$LZO_INCLUDE" -a -d "$LZO_PATH/include"; then
++ LZO_INCLUDE="-I$LZO_PATH/include"
++ fi
++ if test -n "$LZO_LIBPATH"; then
++ :
++ elif test -d "$LZO_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $LZO_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ LZO_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $LZO_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ elif test -d "$LZO_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $LZO_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ LZO_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $LZO_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ LZO_LIBS="$LZO_LIBPATH -llzo2 "
++ else
++ LZO_INCLUDE=""
++ LZO_LIBS="-llzo2 "
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for liblzo2$in_path" >&5
++echo $ECHO_N "checking for liblzo2$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_lzo+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
++ CPPFLAGS=" $LZO_INCLUDE $orig_CPPFLAGS"
++ LIBS="$LZO_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
+- For example, HP-UX 11i <limits.h> declares gettimeofday. */
+-#define $ac_func innocuous_$ac_func
+-
+-/* System header to define __stub macros and hopefully few prototypes,
+- which can conflict with char $ac_func (); below.
+- Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+- <limits.h> exists even on freestanding compilers. */
+-
+-#ifdef __STDC__
+-# include <limits.h>
+-#else
+-# include <assert.h>
+-#endif
+-
+-#undef $ac_func
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-{
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char $ac_func ();
+-/* The GNU C library defines this for functions which it implements
+- to always fail with ENOSYS. Some functions are actually named
+- something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
+-choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+-#endif
+-
++#include <lzo/lzo1x.h>
+ int
+ main ()
+ {
+-return f != $ac_func;
++lzo_uint32 c = lzo_crc32(0, (const unsigned char*)"foo", 3);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- eval "$as_ac_var=yes"
++ ncbi_cv_lib_lzo=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-eval "$as_ac_var=no"
++ ncbi_cv_lib_lzo=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
+-if test `eval echo '${'$as_ac_var'}'` = yes; then
+- cat >>confdefs.h <<_ACEOF
+-#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_lzo" >&5
++echo "${ECHO_T}$ncbi_cv_lib_lzo" >&6; }
++ if test "$ncbi_cv_lib_lzo" = "no"; then
++ if test "${with_lzo:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-lzo explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-lzo explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ fi
++ fi
++ if test "$with_lzo" = "no"; then
++ LZO_PATH="No_LZO"
++ LZO_INCLUDE=
++ LZO_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}LZO"; WithPackagesSep=" "
++ LZO_INCLUDE=" $LZO_INCLUDE"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBLZO 1
+ _ACEOF
+
+ fi
+-done
+
+
+-# We need to include <iconv.h>, since some implementations rename the symbols.
+-# This logic adapted from Bruno Haible's iconv.m4.
+-echo "$as_me:$LINENO: checking for library containing iconv" >&5
+-echo $ECHO_N "checking for library containing iconv... $ECHO_C" >&6
+-if test "${ac_cv_search_iconv+set}" = set; then
++
++
++if test -z "$PCRE_PATH" && pcre-config --version >/dev/null 2>&1; then
++ p=`pcre-config --prefix`
++ test "x$p" = "x/usr" || PCRE_PATH=$p
++fi
++if test "$with_pcre" != "no"; then
++ case "$with_pcre" in
++ yes | "" ) ;;
++ * ) PCRE_PATH=$with_pcre ;;
++ esac
++ if test -d "$PCRE_PATH"; then
++ in_path=" in $PCRE_PATH"
++ if test -z "$PCRE_INCLUDE" -a -d "$PCRE_PATH/include"; then
++ PCRE_INCLUDE="-I$PCRE_PATH/include"
++ fi
++ if test -n "$PCRE_LIBPATH"; then
++ :
++ elif test -d "$PCRE_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $PCRE_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ PCRE_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $PCRE_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ elif test -d "$PCRE_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $PCRE_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ PCRE_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $PCRE_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ PCRE_LIBS="$PCRE_LIBPATH -lpcre "
++ else
++ PCRE_INCLUDE=""
++ PCRE_LIBS="-lpcre "
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for libpcre$in_path" >&5
++echo $ECHO_N "checking for libpcre$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_pcre+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+-
+- ac_cv_search_iconv=no
++ CPPFLAGS=" $PCRE_INCLUDE $orig_CPPFLAGS"
++ LIBS="$PCRE_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <stdlib.h>
+- #include <iconv.h>
++#include <pcre.h>
+ int
+ main ()
+ {
+-iconv_t cd = iconv_open("","");
+- iconv(cd,NULL,NULL,NULL,NULL);
+- iconv_close(cd);
++const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_iconv="none required"
++ ncbi_cv_lib_pcre=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++ ncbi_cv_lib_pcre=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+- if test "$ac_cv_search_iconv" != "none required"; then
+- for l in iconv; do
+- LIBS="-l$l $orig_LIBS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <stdlib.h>
+- #include <iconv.h>
+-int
+-main ()
+-{
+-iconv_t cd = iconv_open("","");
+- iconv(cd,NULL,NULL,NULL,NULL);
+- iconv_close(cd);
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ac_cv_search_iconv=-l$l
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+- LIBS="$orig_LIBS"
+- done
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_pcre" >&5
++echo "${ECHO_T}$ncbi_cv_lib_pcre" >&6; }
++ if test "$ncbi_cv_lib_pcre" = "no"; then
++ if test "${with_pcre:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-pcre explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-pcre explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_iconv" >&5
+-echo "${ECHO_T}$ac_cv_search_iconv" >&6
+-if test "x$ac_cv_search_iconv" != xno; then
++ fi
++ if test "$with_pcre" = "no"; then
++ PCRE_PATH="No_PCRE"
++ PCRE_INCLUDE=
++ PCRE_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
++ PCRE_INCLUDE=" $PCRE_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBICONV 1
++#define HAVE_LIBPCRE 1
+ _ACEOF
+
+- echo "$as_me:$LINENO: checking for iconv declaration" >&5
+-echo $ECHO_N "checking for iconv declaration... $ECHO_C" >&6
+- if test "${am_cv_proto_iconv+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
++ fi
+
+- cat >conftest.$ac_ext <<_ACEOF
+
+-#include <stdlib.h>
+-#include <iconv.h>
+-extern
+-#ifdef __cplusplus
+-"C"
+-#endif
+-#if defined(__STDC__) || defined(__cplusplus)
+-size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
+-#else
+-size_t iconv();
+-#endif
+
++if test -z "$PCRE_LIBS"; then
++ pcrelocal=util/regexp
++ { echo "$as_me:$LINENO: using local PCRE copy in $pcrelocal" >&5
++echo "$as_me: using local PCRE copy in $pcrelocal" >&6;}
++ PCRE_PATH="<$pcrelocal>"
++ PCRE_INCLUDE="-I\$(includedir)/$pcrelocal -I\$(includedir0)/$pcrelocal"
++ # PCRE_LIBS="-lregexp"
++ # PCREPOSIX_LIBS="-lregexp"
++ PCRE_LIB="regexp"
++
++cat >>confdefs.h <<\_ACEOF
++#define USE_LOCAL_PCRE 1
+ _ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- am_cv_proto_iconv_arg1=""
++
++ WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
++ WithPackages="$WithPackages${WithPackagesSep}LocalPCRE"; WithPackagesSep=" "
+ else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
++ PCREPOSIX_LIBS=`echo "$PCRE_LIBS" | sed -e 's/-lpcre/-lpcreposix -lpcre/'`
++fi
+
+-am_cv_proto_iconv_arg1="const"
++## SSL/TLS libraries
++case "$with_gcrypt" in
++ no ) ac_cv_path_LIBGCRYPT_CONFIG=no ;;
++ yes | '' ) ;;
++ * ) GCRYPT_PATH=$with_gcrypt ;;
++esac
++if test -d "$GCRYPT_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $GCRYPT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $GCRYPT_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ GCRYPT_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$GCRYPT_PATH" in
++ /*) ;;
++ * ) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+- am_cv_proto_iconv="extern size_t iconv (iconv_t cd, $am_cv_proto_iconv_arg1 char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);"
++ ;;
++ /*) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
++# Extract the first word of "libgcrypt-config", so it can be a program name with args.
++set dummy libgcrypt-config; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_LIBGCRYPT_CONFIG+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ case $LIBGCRYPT_CONFIG in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_LIBGCRYPT_CONFIG="$LIBGCRYPT_CONFIG" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_dummy="${GCRYPT_BIN-$GCRYPT_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GCRYPT_PATH/bin${bit64_sfx}:$GCRYPT_PATH/bin:$PATH"
++for as_dir in $as_dummy
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_LIBGCRYPT_CONFIG="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++done
++IFS=$as_save_IFS
+
+- am_cv_proto_iconv=`echo "$am_cv_proto_iconv" | tr -s ' ' | sed -e 's/( /(/'`
+- echo "$as_me:$LINENO: result: ${ac_t:-
+- }$am_cv_proto_iconv" >&5
+-echo "${ECHO_T}${ac_t:-
+- }$am_cv_proto_iconv" >&6
+-
+-cat >>confdefs.h <<_ACEOF
+-#define ICONV_CONST $am_cv_proto_iconv_arg1
+-_ACEOF
+-
+- if test "x$ac_cv_search_iconv" != "xnone required"; then
+- ICONV_LIBS=$ac_cv_search_iconv
++ ;;
++esac
+ fi
++LIBGCRYPT_CONFIG=$ac_cv_path_LIBGCRYPT_CONFIG
++if test -n "$LIBGCRYPT_CONFIG"; then
++ { echo "$as_me:$LINENO: result: $LIBGCRYPT_CONFIG" >&5
++echo "${ECHO_T}$LIBGCRYPT_CONFIG" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
+
+-### Third-party libraries
+-
+-usr_lib='[/usr]*/lib/*[amdsprcv]*[23469]*'
+-no_usr_lib="s,-L$usr_lib ,,g;"
+
+-if test "$with_z" != "no"; then
+- case "$with_z" in
++if test "x$with_gcrypt" != xno; then
++ if test -x "$LIBGCRYPT_CONFIG"; then
++ if test -z "$GCRYPT_PATH"; then
++ p=`libgcrypt-config --prefix`
++ test "x$p" = "x/usr" || GCRYPT_PATH=$p
++ fi
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ GCRYPT_LIBPATH=`$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
++ else
++ GCRYPT_LIBPATH=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
++ case "$x" in
++ -L*)
++ GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
++ done
++ GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}"
++ fi
++ GCRYPT_INCLUDE=`$LIBGCRYPT_CONFIG --cflags`
++ GCRYPT_CONFIG_LIBS="`$LIBGCRYPT_CONFIG --libs` $Z_LIBS"
++ fi
++else
++ $as_unset GCRYPT_CONFIG_LIBS || test "${GCRYPT_CONFIG_LIBS+set}" != set || { GCRYPT_CONFIG_LIBS=; export GCRYPT_CONFIG_LIBS; }
++fi
++if test "$with_gcrypt" != "no"; then
++ case "$with_gcrypt" in
+ yes | "" ) ;;
+- * ) Z_PATH=$with_z ;;
++ * ) GCRYPT_PATH=$with_gcrypt ;;
+ esac
+- if test -d "$Z_PATH"; then
+- in_path=" in $Z_PATH"
+- if test -z "$Z_INCLUDE" -a -d "$Z_PATH/include"; then
+- Z_INCLUDE="-I$Z_PATH/include"
++ if test -d "$GCRYPT_PATH"; then
++ in_path=" in $GCRYPT_PATH"
++ if test -z "$GCRYPT_INCLUDE" -a -d "$GCRYPT_PATH/include"; then
++ GCRYPT_INCLUDE="-I$GCRYPT_PATH/include"
+ fi
+- if test -n "$Z_LIBPATH"; then
++ if test -n "$GCRYPT_LIBPATH"; then
+ :
+- elif test -d "$Z_PATH/lib${bit64_sfx}"; then
++ elif test -d "$GCRYPT_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $Z_PATH/lib${bit64_sfx}; do
++ for x in $GCRYPT_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- Z_LIBPATH="${ncbi_rp_L_flags}"
++ GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $Z_PATH/lib${bit64_sfx}; do
++ for x in $GCRYPT_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$Z_PATH/lib"; then
++ elif test -d "$GCRYPT_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $Z_PATH/lib; do
++ for x in $GCRYPT_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- Z_LIBPATH="${ncbi_rp_L_flags}"
++ GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $Z_PATH/lib; do
++ for x in $GCRYPT_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- Z_LIBS="$Z_LIBPATH -lz "
++ GCRYPT_LIBS="$GCRYPT_LIBPATH -lgcrypt $GCRYPT_CONFIG_LIBS"
+ else
+- Z_INCLUDE=""
+- Z_LIBS="-lz "
++ GCRYPT_INCLUDE=""
++ GCRYPT_LIBS="-lgcrypt $GCRYPT_CONFIG_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libz$in_path" >&5
+-echo $ECHO_N "checking for libz$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_z+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libgcrypt$in_path" >&5
++echo $ECHO_N "checking for libgcrypt$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_gcrypt+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $Z_INCLUDE $orig_CPPFLAGS"
+- LIBS="$Z_LIBS $orig_LIBS"
++ CPPFLAGS=" $GCRYPT_INCLUDE $orig_CPPFLAGS"
++ LIBS="$GCRYPT_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <zlib.h>
++#include <gcrypt.h>
++ #include <pthread.h>
++ #include <errno.h>
++ GCRY_THREAD_OPTION_PTHREAD_IMPL;
+ int
+ main ()
+ {
+-gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf))
++gcry_control(GCRYCTL_SET_THREAD_CBS, &gcry_threads_pthread);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_z=yes
++ ncbi_cv_lib_gcrypt=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_z=no
++ ncbi_cv_lib_gcrypt=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_z" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_z" >&6
+- if test "$ncbi_cv_lib_z" = "no"; then
+- if test "${with_z:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-z explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-z explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gcrypt" >&5
++echo "${ECHO_T}$ncbi_cv_lib_gcrypt" >&6; }
++ if test "$ncbi_cv_lib_gcrypt" = "no"; then
++ if test "${with_gcrypt:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-gcrypt explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-gcrypt explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_z" = "no"; then
+- Z_PATH="No_Z"
+- Z_INCLUDE=
+- Z_LIBS=
++ if test "$with_gcrypt" = "no"; then
++ GCRYPT_PATH="No_GCRYPT"
++ GCRYPT_INCLUDE=
++ GCRYPT_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
+- Z_INCLUDE=" $Z_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}GCRYPT"; WithPackagesSep=" "
++ GCRYPT_INCLUDE=" $GCRYPT_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBZ 1
++#define HAVE_LIBGCRYPT 1
+ _ACEOF
+
+ fi
+
+
+
+-if test -z "$Z_LIBS"; then
+- zlocal=util/compress/zlib
+- { echo "$as_me:$LINENO: using local zlib copy in $zlocal" >&5
+-echo "$as_me: using local zlib copy in $zlocal" >&6;}
+- Z_PATH="<$zlocal>"
+- Z_INCLUDE="-I\$(includedir)/$zlocal -I\$(includedir0)/$zlocal"
+- # Z_LIBS="-lz"
+- Z_LIB="z"
+- # AC_DEFINE(USE_LOCAL_ZLIB, 1, [Define to 1 if using a local copy of zlib.])
+- WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
+- WithPackages="$WithPackages${WithPackagesSep}LocalZ"; WithPackagesSep=" "
++if test "x$with_gcrypt" != xno -a -n "$GCRYPT_CONFIG_LIBS"; then
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ GCRYPT_LIBS=`echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`
++ else
++ GCRYPT_LIBS=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
++ case "$x" in
++ -L*)
++ GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
++ done
++ GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}"
++ fi
+ fi
+
+-if test "$with_bz2" != "no"; then
+- case "$with_bz2" in
++case "$with_gnutls" in
++ no ) ac_cv_path_LIBGNUTLS_CONFIG=no ;;
++ yes | '' ) ;;
++ * ) GNUTLS_PATH=$with_gnutls ;;
++esac
++if test -d "$GNUTLS_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $GNUTLS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $GNUTLS_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ GNUTLS_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$GNUTLS_PATH" in
++ /*) ;;
++ * ) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ gnutls_config_path=${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin
++else
++ gnutls_config_path=$PATH
++fi
++# Extract the first word of "libgnutls-config", so it can be a program name with args.
++set dummy libgnutls-config; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_LIBGNUTLS_CONFIG+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ case $LIBGNUTLS_CONFIG in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_LIBGNUTLS_CONFIG="$LIBGNUTLS_CONFIG" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $gnutls_config_path
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_LIBGNUTLS_CONFIG="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++done
++IFS=$as_save_IFS
++
++ ;;
++esac
++fi
++LIBGNUTLS_CONFIG=$ac_cv_path_LIBGNUTLS_CONFIG
++if test -n "$LIBGNUTLS_CONFIG"; then
++ { echo "$as_me:$LINENO: result: $LIBGNUTLS_CONFIG" >&5
++echo "${ECHO_T}$LIBGNUTLS_CONFIG" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++fi
++
++
++
++if test "x$with_gnutls" != xno; then
++ if test -x "$LIBGNUTLS_CONFIG"; then
++ if test -z "$GNUTLS_PATH"; then
++ p=`libgnutls-config --prefix`
++ test "x$p" = "x/usr" || GNUTLS_PATH=$p
++ fi
++ else
++ LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls --static"
++ $LIBGNUTLS_CONFIG --exists >/dev/null 2>&1 || LIBGNUTLS_CONFIG=no
++ fi
++ case "$LIBGNUTLS_CONFIG" in
++ eval\ *)
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`
++ else
++ GNUTLS_LIBPATH=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`; do
++ case "$x" in
++ -L*)
++ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
++ done
++ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
++ fi
++ ;;
++ no)
++ ;;
++ *)
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
++ else
++ GNUTLS_LIBPATH=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
++ case "$x" in
++ -L*)
++ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
++ done
++ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
++ fi
++ ;;
++ esac
++
++ if test "x$LIBGNUTLS_CONFIG" != xno; then
++ GNUTLS_INCLUDE=`$LIBGNUTLS_CONFIG --cflags`
++ GNUTLS_CONFIG_LIBS="`$LIBGNUTLS_CONFIG --libs` $Z_LIBS"
++ fi
++else
++ $as_unset GNUTLS_CONFIG_LIBS || test "${GNUTLS_CONFIG_LIBS+set}" != set || { GNUTLS_CONFIG_LIBS=; export GNUTLS_CONFIG_LIBS; }
++fi
++if test "$with_gnutls" != "no"; then
++ case "$with_gnutls" in
+ yes | "" ) ;;
+- * ) BZ2_PATH=$with_bz2 ;;
++ * ) GNUTLS_PATH=$with_gnutls ;;
+ esac
+- if test -d "$BZ2_PATH"; then
+- in_path=" in $BZ2_PATH"
+- if test -z "$BZ2_INCLUDE" -a -d "$BZ2_PATH/include"; then
+- BZ2_INCLUDE="-I$BZ2_PATH/include"
++ if test -d "$GNUTLS_PATH"; then
++ in_path=" in $GNUTLS_PATH"
++ if test -z "$GNUTLS_INCLUDE" -a -d "$GNUTLS_PATH/include"; then
++ GNUTLS_INCLUDE="-I$GNUTLS_PATH/include"
+ fi
+- if test -n "$BZ2_LIBPATH"; then
++ if test -n "$GNUTLS_LIBPATH"; then
+ :
+- elif test -d "$BZ2_PATH/lib${bit64_sfx}"; then
++ elif test -d "$GNUTLS_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $BZ2_PATH/lib${bit64_sfx}; do
++ for x in $GNUTLS_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- BZ2_LIBPATH="${ncbi_rp_L_flags}"
++ GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $BZ2_PATH/lib${bit64_sfx}; do
++ for x in $GNUTLS_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$BZ2_PATH/lib"; then
++ elif test -d "$GNUTLS_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $BZ2_PATH/lib; do
++ for x in $GNUTLS_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- BZ2_LIBPATH="${ncbi_rp_L_flags}"
++ GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $BZ2_PATH/lib; do
++ for x in $GNUTLS_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- BZ2_LIBS="$BZ2_LIBPATH -lbz2 "
++ GNUTLS_LIBS="$GNUTLS_LIBPATH -lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
+ else
+- BZ2_INCLUDE=""
+- BZ2_LIBS="-lbz2 "
++ GNUTLS_INCLUDE=""
++ GNUTLS_LIBS="-lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libbz2$in_path" >&5
+-echo $ECHO_N "checking for libbz2$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_bz2+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libgnutls$in_path" >&5
++echo $ECHO_N "checking for libgnutls$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_gnutls+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $BZ2_INCLUDE $orig_CPPFLAGS"
+- LIBS="$BZ2_LIBS $orig_LIBS"
++ CPPFLAGS=" $GNUTLS_INCLUDE $orig_CPPFLAGS"
++ LIBS="$GNUTLS_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <bzlib.h>
++#include <gnutls/gnutls.h>
+ int
+ main ()
+ {
+-BZFILE* fp; char buf[1024]; int err;
+- int n = BZ2_bzRead(&err, fp, buf, sizeof(buf))
++gnutls_session_t s; gnutls_init(&s, GNUTLS_CLIENT);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_bz2=yes
++ ncbi_cv_lib_gnutls=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_bz2=no
++ ncbi_cv_lib_gnutls=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_bz2" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_bz2" >&6
+- if test "$ncbi_cv_lib_bz2" = "no"; then
+- if test "${with_bz2:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-bz2 explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-bz2 explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gnutls" >&5
++echo "${ECHO_T}$ncbi_cv_lib_gnutls" >&6; }
++ if test "$ncbi_cv_lib_gnutls" = "no"; then
++ if test "${with_gnutls:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-gnutls explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-gnutls explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_bz2" = "no"; then
+- BZ2_PATH="No_BZ2"
+- BZ2_INCLUDE=
+- BZ2_LIBS=
++ if test "$with_gnutls" = "no"; then
++ GNUTLS_PATH="No_GNUTLS"
++ GNUTLS_INCLUDE=
++ GNUTLS_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
+- BZ2_INCLUDE=" $BZ2_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}GNUTLS"; WithPackagesSep=" "
++ GNUTLS_INCLUDE=" $GNUTLS_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBBZ2 1
++#define HAVE_LIBGNUTLS 1
+ _ACEOF
+
+ fi
+
+
+
+-if test -z "$BZ2_LIBS"; then
+- bzlocal=util/compress/bzip2
+- { echo "$as_me:$LINENO: using local bzlib copy in $bzlocal" >&5
+-echo "$as_me: using local bzlib copy in $bzlocal" >&6;}
+- BZ2_PATH="<$bzlocal>"
+- BZ2_INCLUDE="-I\$(includedir)/$bzlocal -I\$(includedir0)/$bzlocal"
+- # BZ2_LIBS="-lbz2"
+- BZ2_LIB="bz2"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define USE_LOCAL_BZLIB 1
+-_ACEOF
+-
+- WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
+- WithPackages="$WithPackages${WithPackagesSep}LocalBZ2"; WithPackagesSep=" "
+-fi
+-
+-: ${LZO_PATH=$NCBI/lzo2}
+-if test -d "$LZO_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $LZO_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $LZO_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- LZO_PATH=$ncbi_fix_dir_tmp2
++if test "x$with_gnutls" != xno -a -n "$GNUTLS_CONFIG_LIBS"; then
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ GNUTLS_LIBS=`echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`
+ else
+- case "$LZO_PATH" in
+- /*) ;;
+- * ) LZO_PATH=$ncbi_fix_dir_tmp ;;
++ GNUTLS_LIBS=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
++ case "$x" in
++ -L*)
++ GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
+ esac
++ ncbi_rp_L_sep=" "
++ done
++ GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}"
+ fi
+- ;;
+- /*) LZO_PATH=$ncbi_fix_dir_tmp ;;
++ # Conservatively build against gcrypt if available even when gnutls
++ # uses nettle instead, because gcrypt needs explicit initialization
++ # to be thread-safe, but gnutls's headers don't indicate which
++ # underlying crypto library it's actually using.
++ case "$GNUTLS_INCLUDE" in
++ *$GCRYPT_INCLUDE* ) ;;
++ * ) GNUTLS_INCLUDE="$GNUTLS_INCLUDE $GCRYPT_INCLUDE" ;;
++ esac
++ case "$GNUTLS_LIBS" in
++ *\ -lgcrypt* ) ;;
++ * ) GNUTLS_LIBS="$GNUTLS_LIBS $GCRYPT_LIBS" ;;
+ esac
+ fi
+-if test "$with_lzo" != "no"; then
+- case "$with_lzo" in
++
++if test "$with_openssl" != "no"; then
++ case "$with_openssl" in
+ yes | "" ) ;;
+- * ) LZO_PATH=$with_lzo ;;
++ * ) OPENSSL_PATH=$with_openssl ;;
+ esac
+- if test -d "$LZO_PATH"; then
+- in_path=" in $LZO_PATH"
+- if test -z "$LZO_INCLUDE" -a -d "$LZO_PATH/include"; then
+- LZO_INCLUDE="-I$LZO_PATH/include"
++ if test -d "$OPENSSL_PATH"; then
++ in_path=" in $OPENSSL_PATH"
++ if test -z "$OPENSSL_INCLUDE" -a -d "$OPENSSL_PATH/include"; then
++ OPENSSL_INCLUDE="-I$OPENSSL_PATH/include"
+ fi
+- if test -n "$LZO_LIBPATH"; then
++ if test -n "$OPENSSL_LIBPATH"; then
+ :
+- elif test -d "$LZO_PATH/lib${bit64_sfx}"; then
++ elif test -d "$OPENSSL_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $LZO_PATH/lib${bit64_sfx}; do
++ for x in $OPENSSL_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- LZO_LIBPATH="${ncbi_rp_L_flags}"
++ OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $LZO_PATH/lib${bit64_sfx}; do
++ for x in $OPENSSL_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$LZO_PATH/lib"; then
++ elif test -d "$OPENSSL_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $LZO_PATH/lib; do
++ for x in $OPENSSL_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- LZO_LIBPATH="${ncbi_rp_L_flags}"
++ OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $LZO_PATH/lib; do
++ for x in $OPENSSL_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- LZO_LIBS="$LZO_LIBPATH -llzo2 "
++ OPENSSL_LIBS="$OPENSSL_LIBPATH -lssl -lcrypto"
+ else
+- LZO_INCLUDE=""
+- LZO_LIBS="-llzo2 "
++ OPENSSL_INCLUDE=""
++ OPENSSL_LIBS="-lssl -lcrypto"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for liblzo2$in_path" >&5
+-echo $ECHO_N "checking for liblzo2$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_lzo+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libssl$in_path" >&5
++echo $ECHO_N "checking for libssl$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_openssl+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $LZO_INCLUDE $orig_CPPFLAGS"
+- LIBS="$LZO_LIBS $orig_LIBS"
++ CPPFLAGS=" $OPENSSL_INCLUDE $orig_CPPFLAGS"
++ LIBS="$OPENSSL_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <lzo/lzo1x.h>
++#include <openssl/ssl.h>
+ int
+ main ()
+ {
+-lzo_uint32 c = lzo_crc32(0, (const unsigned char*)"foo", 3);
++SSL_library_init();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_lzo=yes
++ ncbi_cv_lib_openssl=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_lzo=no
++ ncbi_cv_lib_openssl=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_lzo" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_lzo" >&6
+- if test "$ncbi_cv_lib_lzo" = "no"; then
+- if test "${with_lzo:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-lzo explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-lzo explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_openssl" >&5
++echo "${ECHO_T}$ncbi_cv_lib_openssl" >&6; }
++ if test "$ncbi_cv_lib_openssl" = "no"; then
++ if test "${with_openssl:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-openssl explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-openssl explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_lzo" = "no"; then
+- LZO_PATH="No_LZO"
+- LZO_INCLUDE=
+- LZO_LIBS=
++ if test "$with_openssl" = "no"; then
++ OPENSSL_PATH="No_OPENSSL"
++ OPENSSL_INCLUDE=
++ OPENSSL_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}LZO"; WithPackagesSep=" "
+- LZO_INCLUDE=" $LZO_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}OPENSSL"; WithPackagesSep=" "
++ OPENSSL_INCLUDE=" $OPENSSL_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBLZO 1
++#define HAVE_LIBOPENSSL 1
+ _ACEOF
+
+ fi
+@@ -21639,1287 +26023,420 @@
+
+
+
+-if test -z "$PCRE_PATH" && pcre-config --version >/dev/null 2>&1; then
+- p=`pcre-config --prefix`
+- test "x$p" = "x/usr" || PCRE_PATH=$p
++OPENSSL_STATIC_LIBS=$OPENSSL_LIBS
++for d in `echo " $OPENSSL_LIBS" | fmt -w 1 | sed -ne 's/^ *-L//p'` \
++ /usr/local/lib${bit64_sfx} /usr/local/lib /usr/lib${bit64_sfx} /usr/lib; do
++ if test -f $d/libssl.a -a -f $d/libcrypto.a; then
++ OPENSSL_STATIC_LIBS="$d/libssl.a $d/libcrypto.a"
++ break
++ elif test -f $d/libssl.so -o -f $d/libssl.dylib; then
++ break
+ fi
+-if test "$with_pcre" != "no"; then
+- case "$with_pcre" in
++done
++
++if test -n "$GNUTLS_LIBS"; then
++ TLS_INCLUDE=$GNUTLS_INCLUDE
++ TLS_LIBS=$GNUTLS_LIBS
++else
++ TLS_INCLUDE=$OPENSSL_INCLUDE
++ TLS_LIBS=$OPENSSL_LIBS
++fi
++
++
++case "$with_krb5" in
++ no ) ac_cv_path_KRB5_CONFIG=no ;;
++ yes | '' ) : ${KRB5_PATH=/usr/kerberos} ;;
++ * ) KRB5_PATH=$with_krb5 ;;
++esac
++# Extract the first word of "krb5-config", so it can be a program name with args.
++set dummy krb5-config; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_KRB5_CONFIG+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ case $KRB5_CONFIG in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_KRB5_CONFIG="$KRB5_CONFIG" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_dummy="${KRB5_BIN-$KRB5_PATH/bin}:$PATH"
++for as_dir in $as_dummy
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_KRB5_CONFIG="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++done
++IFS=$as_save_IFS
++
++ ;;
++esac
++fi
++KRB5_CONFIG=$ac_cv_path_KRB5_CONFIG
++if test -n "$KRB5_CONFIG"; then
++ { echo "$as_me:$LINENO: result: $KRB5_CONFIG" >&5
++echo "${ECHO_T}$KRB5_CONFIG" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++fi
++
++
++
++if test "x$with_krb5" != xno; then
++ if test -x "$KRB5_CONFIG"; then
++ KRB5_PATH=`$KRB5_CONFIG --prefix`
++ KRB5_INCLUDE=`$KRB5_CONFIG --cflags | \
++ sed -e 's/$/ /; s,-I/usr/include ,,'`
++ KRB5_CONFIG_LIBS=`$KRB5_CONFIG --libs gssapi | \
++ sed -e 's/^/ /; s/ -[^Ll][^ ]*//g'`
++ fi
++else
++ KRB5_CONFIG_LIBS=$KRB5_LIBS
++fi
++if test "$with_krb5" != "no"; then
++ case "$with_krb5" in
+ yes | "" ) ;;
+- * ) PCRE_PATH=$with_pcre ;;
++ * ) KRB5_PATH=$with_krb5 ;;
+ esac
+- if test -d "$PCRE_PATH"; then
+- in_path=" in $PCRE_PATH"
+- if test -z "$PCRE_INCLUDE" -a -d "$PCRE_PATH/include"; then
+- PCRE_INCLUDE="-I$PCRE_PATH/include"
++ if test -d "$KRB5_PATH"; then
++ in_path=" in $KRB5_PATH"
++ if test -z "$KRB5_INCLUDE" -a -d "$KRB5_PATH/include"; then
++ KRB5_INCLUDE="-I$KRB5_PATH/include"
+ fi
+- if test -n "$PCRE_LIBPATH"; then
++ if test -n "$KRB5_LIBPATH"; then
+ :
+- elif test -d "$PCRE_PATH/lib${bit64_sfx}"; then
++ elif test -d "$KRB5_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $PCRE_PATH/lib${bit64_sfx}; do
++ for x in $KRB5_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- PCRE_LIBPATH="${ncbi_rp_L_flags}"
++ KRB5_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $PCRE_PATH/lib${bit64_sfx}; do
++ for x in $KRB5_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$PCRE_PATH/lib"; then
++ elif test -d "$KRB5_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $PCRE_PATH/lib; do
++ for x in $KRB5_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- PCRE_LIBPATH="${ncbi_rp_L_flags}"
++ KRB5_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $PCRE_PATH/lib; do
++ for x in $KRB5_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- PCRE_LIBS="$PCRE_LIBPATH -lpcre "
++ KRB5_LIBS="$KRB5_LIBPATH -lgssapi_krb5 $KRB5_CONFIG_LIBS"
+ else
+- PCRE_INCLUDE=""
+- PCRE_LIBS="-lpcre "
++ KRB5_INCLUDE=""
++ KRB5_LIBS="-lgssapi_krb5 $KRB5_CONFIG_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libpcre$in_path" >&5
+-echo $ECHO_N "checking for libpcre$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_pcre+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libgssapi_krb5$in_path" >&5
++echo $ECHO_N "checking for libgssapi_krb5$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_krb5+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $PCRE_INCLUDE $orig_CPPFLAGS"
+- LIBS="$PCRE_LIBS $orig_LIBS"
++ CPPFLAGS=" $KRB5_INCLUDE $orig_CPPFLAGS"
++ LIBS="$KRB5_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <pcre.h>
++#include <time.h>
++extern "C" {
++#include <gssapi/gssapi_krb5.h>
++}
+ int
+ main ()
+ {
+-const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s);
++OM_uint32 min_stat;
++ gss_buffer_desc buf;
++ gss_release_buffer(&min_stat, &buf);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_pcre=yes
++ ncbi_cv_lib_krb5=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_pcre=no
++ ncbi_cv_lib_krb5=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_pcre" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_pcre" >&6
+- if test "$ncbi_cv_lib_pcre" = "no"; then
+- if test "${with_pcre:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-pcre explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-pcre explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_krb5" >&5
++echo "${ECHO_T}$ncbi_cv_lib_krb5" >&6; }
++ if test "$ncbi_cv_lib_krb5" = "no"; then
++ if test "${with_krb5:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-krb5 explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-krb5 explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_pcre" = "no"; then
+- PCRE_PATH="No_PCRE"
+- PCRE_INCLUDE=
+- PCRE_LIBS=
++ if test "$with_krb5" = "no"; then
++ KRB5_PATH="No_KRB5"
++ KRB5_INCLUDE=
++ KRB5_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
+- PCRE_INCLUDE=" $PCRE_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBPCRE 1
+-_ACEOF
+-
+- fi
+-
+-
+-
+-if test -z "$PCRE_LIBS"; then
+- pcrelocal=util/regexp
+- { echo "$as_me:$LINENO: using local PCRE copy in $pcrelocal" >&5
+-echo "$as_me: using local PCRE copy in $pcrelocal" >&6;}
+- PCRE_PATH="<$pcrelocal>"
+- PCRE_INCLUDE="-I\$(includedir)/$pcrelocal -I\$(includedir0)/$pcrelocal"
+- # PCRE_LIBS="-lregexp"
+- # PCREPOSIX_LIBS="-lregexp"
+- PCRE_LIB="regexp"
++ WithPackages="$WithPackages${WithPackagesSep}KRB5"; WithPackagesSep=" "
++ KRB5_INCLUDE=" $KRB5_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define USE_LOCAL_PCRE 1
++#define HAVE_LIBKRB5 1
+ _ACEOF
+
+- WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
+- WithPackages="$WithPackages${WithPackagesSep}LocalPCRE"; WithPackagesSep=" "
+-else
+- PCREPOSIX_LIBS=`echo "$PCRE_LIBS" | sed -e 's/-lpcre/-lpcreposix -lpcre/'`
+-fi
+-
+-## SSL/TLS libraries
+-case "$with_gcrypt" in
+- no ) ac_cv_path_LIBGCRYPT_CONFIG=no ;;
+- yes | '' ) : ${GCRYPT_PATH=$NCBI/gcrypt} ;;
+- * ) GCRYPT_PATH=$with_gcrypt ;;
+-esac
+-if test -d "$GCRYPT_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $GCRYPT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $GCRYPT_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- GCRYPT_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$GCRYPT_PATH" in
+- /*) ;;
+- * ) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+-fi
+-# Extract the first word of "libgcrypt-config", so it can be a program name with args.
+-set dummy libgcrypt-config; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_path_LIBGCRYPT_CONFIG+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- case $LIBGCRYPT_CONFIG in
+- [\\/]* | ?:[\\/]*)
+- ac_cv_path_LIBGCRYPT_CONFIG="$LIBGCRYPT_CONFIG" # Let the user override the test with a path.
+- ;;
+- *)
+- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-as_dummy="${GCRYPT_BIN-$GCRYPT_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GCRYPT_PATH/bin${bit64_sfx}:$GCRYPT_PATH/bin:$PATH"
+-for as_dir in $as_dummy
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_path_LIBGCRYPT_CONFIG="$as_dir/$ac_word$ac_exec_ext"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
+- fi
+-done
+-done
+-
+- ;;
+-esac
+ fi
+-LIBGCRYPT_CONFIG=$ac_cv_path_LIBGCRYPT_CONFIG
+
+-if test -n "$LIBGCRYPT_CONFIG"; then
+- echo "$as_me:$LINENO: result: $LIBGCRYPT_CONFIG" >&5
+-echo "${ECHO_T}$LIBGCRYPT_CONFIG" >&6
+-else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
+-fi
+
+
+-if test "x$with_gcrypt" != xno; then
+- if test -x "$LIBGCRYPT_CONFIG"; then
+- if test -z "$GCRYPT_PATH"; then
+- p=`libgcrypt-config --prefix`
+- test "x$p" = "x/usr" || GCRYPT_PATH=$p
+- fi
++if test "x$with_krb5" != xno; then
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- GCRYPT_LIBPATH=`$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
++ KRB5_LIBS=`echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`
+ else
+- GCRYPT_LIBPATH=
++ KRB5_LIBS=
+ ncbi_rp_L_sep=
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
++ for x in `echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
+ case "$x" in
+ -L*)
+- GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_L_sep}$x"
++ KRB5_LIBS="$KRB5_LIBS${ncbi_rp_L_sep}$x"
+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ ;;
+ *)
+- GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+ ;;
+ esac
+ ncbi_rp_L_sep=" "
+ done
+- GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}"
+- fi
+- GCRYPT_INCLUDE=`$LIBGCRYPT_CONFIG --cflags`
+- GCRYPT_CONFIG_LIBS="`$LIBGCRYPT_CONFIG --libs` $Z_LIBS"
++ KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}"
+ fi
+-else
+- $as_unset GCRYPT_CONFIG_LIBS || test "${GCRYPT_CONFIG_LIBS+set}" != set || { GCRYPT_CONFIG_LIBS=; export GCRYPT_CONFIG_LIBS; }
+ fi
+-if test "$with_gcrypt" != "no"; then
+- case "$with_gcrypt" in
++
++
++if test "$with_curl" != "no"; then
++ case "$with_curl" in
+ yes | "" ) ;;
+- * ) GCRYPT_PATH=$with_gcrypt ;;
++ * ) CURL_PATH=$with_curl ;;
+ esac
+- if test -d "$GCRYPT_PATH"; then
+- in_path=" in $GCRYPT_PATH"
+- if test -z "$GCRYPT_INCLUDE" -a -d "$GCRYPT_PATH/include"; then
+- GCRYPT_INCLUDE="-I$GCRYPT_PATH/include"
++ if test -d "$CURL_PATH"; then
++ in_path=" in $CURL_PATH"
++ if test -z "$CURL_INCLUDE" -a -d "$CURL_PATH/include"; then
++ CURL_INCLUDE="-I$CURL_PATH/include"
+ fi
+- if test -n "$GCRYPT_LIBPATH"; then
++ if test -n "$CURL_LIBPATH"; then
+ :
+- elif test -d "$GCRYPT_PATH/lib${bit64_sfx}"; then
++ elif test -d "$CURL_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $GCRYPT_PATH/lib${bit64_sfx}; do
++ for x in $CURL_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
++ CURL_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $GCRYPT_PATH/lib${bit64_sfx}; do
++ for x in $CURL_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$GCRYPT_PATH/lib"; then
++ elif test -d "$CURL_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $GCRYPT_PATH/lib; do
++ for x in $CURL_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
++ CURL_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $GCRYPT_PATH/lib; do
++ for x in $CURL_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- GCRYPT_LIBS="$GCRYPT_LIBPATH -lgcrypt $GCRYPT_CONFIG_LIBS"
++ CURL_LIBS="$CURL_LIBPATH -lcurl "
+ else
+- GCRYPT_INCLUDE=""
+- GCRYPT_LIBS="-lgcrypt $GCRYPT_CONFIG_LIBS"
++ CURL_INCLUDE=""
++ CURL_LIBS="-lcurl "
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libgcrypt$in_path" >&5
+-echo $ECHO_N "checking for libgcrypt$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_gcrypt+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libcurl$in_path" >&5
++echo $ECHO_N "checking for libcurl$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_curl+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $GCRYPT_INCLUDE $orig_CPPFLAGS"
+- LIBS="$GCRYPT_LIBS $orig_LIBS"
++ CPPFLAGS=" $CURL_INCLUDE $orig_CPPFLAGS"
++ LIBS="$CURL_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <gcrypt.h>
+- #include <pthread.h>
+- #include <errno.h>
+- GCRY_THREAD_OPTION_PTHREAD_IMPL;
++#include <curl/curl.h>
+ int
+ main ()
+ {
+-gcry_control(GCRYCTL_SET_THREAD_CBS, &gcry_threads_pthread);
++char* v = curl_version();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_gcrypt=yes
++ ncbi_cv_lib_curl=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_gcrypt=no
++ ncbi_cv_lib_curl=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_gcrypt" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_gcrypt" >&6
+- if test "$ncbi_cv_lib_gcrypt" = "no"; then
+- if test "${with_gcrypt:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-gcrypt explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-gcrypt explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_curl" >&5
++echo "${ECHO_T}$ncbi_cv_lib_curl" >&6; }
++ if test "$ncbi_cv_lib_curl" = "no"; then
++ if test "${with_curl:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-curl explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-curl explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_gcrypt" = "no"; then
+- GCRYPT_PATH="No_GCRYPT"
+- GCRYPT_INCLUDE=
+- GCRYPT_LIBS=
++ if test "$with_curl" = "no"; then
++ CURL_PATH="No_CURL"
++ CURL_INCLUDE=
++ CURL_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}GCRYPT"; WithPackagesSep=" "
+- GCRYPT_INCLUDE=" $GCRYPT_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}CURL"; WithPackagesSep=" "
++ CURL_INCLUDE=" $CURL_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBGCRYPT 1
+-_ACEOF
+-
+- fi
+-
+-
+-
+-if test "x$with_gcrypt" != xno -a -n "$GCRYPT_CONFIG_LIBS"; then
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- GCRYPT_LIBS=`echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`
+- else
+- GCRYPT_LIBS=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
+- case "$x" in
+- -L*)
+- GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+- done
+- GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}"
+- fi
+-fi
+-
+-case "$with_gnutls" in
+- no ) ac_cv_path_LIBGNUTLS_CONFIG=no ;;
+- yes | '' ) : ${GNUTLS_PATH=$NCBI/gnutls} ;;
+- * ) GNUTLS_PATH=$with_gnutls ;;
+-esac
+-if test -d "$GNUTLS_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $GNUTLS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $GNUTLS_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- GNUTLS_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$GNUTLS_PATH" in
+- /*) ;;
+- * ) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+-fi
+-# Extract the first word of "libgnutls-config", so it can be a program name with args.
+-set dummy libgnutls-config; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_path_LIBGNUTLS_CONFIG+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- case $LIBGNUTLS_CONFIG in
+- [\\/]* | ?:[\\/]*)
+- ac_cv_path_LIBGNUTLS_CONFIG="$LIBGNUTLS_CONFIG" # Let the user override the test with a path.
+- ;;
+- *)
+- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-as_dummy="${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin:$PATH"
+-for as_dir in $as_dummy
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_path_LIBGNUTLS_CONFIG="$as_dir/$ac_word$ac_exec_ext"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
+- fi
+-done
+-done
+-
+- ;;
+-esac
+-fi
+-LIBGNUTLS_CONFIG=$ac_cv_path_LIBGNUTLS_CONFIG
+-
+-if test -n "$LIBGNUTLS_CONFIG"; then
+- echo "$as_me:$LINENO: result: $LIBGNUTLS_CONFIG" >&5
+-echo "${ECHO_T}$LIBGNUTLS_CONFIG" >&6
+-else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
+-fi
+-
+-
+-if test "x$with_gnutls" != xno; then
+- if test -x "$LIBGNUTLS_CONFIG"; then
+- if test -z "$GNUTLS_PATH"; then
+- p=`libgnutls-config --prefix`
+- test "x$p" = "x/usr" || GNUTLS_PATH=$p
+- fi
+- else
+- LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls"
+- $LIBGNUTLS_CONFIG --exists >/dev/null 2>&1 || LIBGNUTLS_CONFIG=no
+- fi
+- case "$LIBGNUTLS_CONFIG" in
+- eval\ *)
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`
+- else
+- GNUTLS_LIBPATH=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`; do
+- case "$x" in
+- -L*)
+- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+- done
+- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
+- fi
+- ;;
+- no)
+- ;;
+- *)
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
+- else
+- GNUTLS_LIBPATH=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
+- case "$x" in
+- -L*)
+- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+- done
+- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
+- fi
+- ;;
+- esac
+-
+- if test "x$LIBGNUTLS_CONFIG" != xno; then
+- GNUTLS_INCLUDE=`$LIBGNUTLS_CONFIG --cflags`
+- GNUTLS_CONFIG_LIBS="`$LIBGNUTLS_CONFIG --libs` $Z_LIBS"
+- fi
+-else
+- $as_unset GNUTLS_CONFIG_LIBS || test "${GNUTLS_CONFIG_LIBS+set}" != set || { GNUTLS_CONFIG_LIBS=; export GNUTLS_CONFIG_LIBS; }
+-fi
+-if test "$with_gnutls" != "no"; then
+- case "$with_gnutls" in
+- yes | "" ) ;;
+- * ) GNUTLS_PATH=$with_gnutls ;;
+- esac
+- if test -d "$GNUTLS_PATH"; then
+- in_path=" in $GNUTLS_PATH"
+- if test -z "$GNUTLS_INCLUDE" -a -d "$GNUTLS_PATH/include"; then
+- GNUTLS_INCLUDE="-I$GNUTLS_PATH/include"
+- fi
+- if test -n "$GNUTLS_LIBPATH"; then
+- :
+- elif test -d "$GNUTLS_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $GNUTLS_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $GNUTLS_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- elif test -d "$GNUTLS_PATH/lib"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $GNUTLS_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $GNUTLS_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- fi
+- GNUTLS_LIBS="$GNUTLS_LIBPATH -lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
+- else
+- GNUTLS_INCLUDE=""
+- GNUTLS_LIBS="-lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
+- in_path=
+- fi
+- echo "$as_me:$LINENO: checking for libgnutls$in_path" >&5
+-echo $ECHO_N "checking for libgnutls$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_gnutls+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- CPPFLAGS=" $GNUTLS_INCLUDE $orig_CPPFLAGS"
+- LIBS="$GNUTLS_LIBS $orig_LIBS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <gnutls/gnutls.h>
+-int
+-main ()
+-{
+-gnutls_session_t s; gnutls_init(&s, GNUTLS_CLIENT);
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_lib_gnutls=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_gnutls=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_gnutls" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_gnutls" >&6
+- if test "$ncbi_cv_lib_gnutls" = "no"; then
+- if test "${with_gnutls:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-gnutls explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-gnutls explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- fi
+- if test "$with_gnutls" = "no"; then
+- GNUTLS_PATH="No_GNUTLS"
+- GNUTLS_INCLUDE=
+- GNUTLS_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}GNUTLS"; WithPackagesSep=" "
+- GNUTLS_INCLUDE=" $GNUTLS_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBGNUTLS 1
+-_ACEOF
+-
+- fi
+-
+-
+-
+-if test "x$with_gnutls" != xno -a -n "$GNUTLS_CONFIG_LIBS"; then
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- GNUTLS_LIBS=`echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`
+- else
+- GNUTLS_LIBS=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
+- case "$x" in
+- -L*)
+- GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+- done
+- GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}"
+- fi
+- case "$GNUTLS_INCLUDE" in
+- *$GCRYPT_INCLUDE* ) ;;
+- * ) GNUTLS_INCLUDE="$GNUTLS_INCLUDE $GCRYPT_INCLUDE" ;;
+- esac
+- case "$GNUTLS_LIBS" in
+- *\ -lgcrypt* ) ;;
+- * ) GNUTLS_LIBS="$GNUTLS_LIBS $GCRYPT_LIBS" ;;
+- esac
+-fi
+-
+-if test "$with_openssl" != "no"; then
+- case "$with_openssl" in
+- yes | "" ) ;;
+- * ) OPENSSL_PATH=$with_openssl ;;
+- esac
+- if test -d "$OPENSSL_PATH"; then
+- in_path=" in $OPENSSL_PATH"
+- if test -z "$OPENSSL_INCLUDE" -a -d "$OPENSSL_PATH/include"; then
+- OPENSSL_INCLUDE="-I$OPENSSL_PATH/include"
+- fi
+- if test -n "$OPENSSL_LIBPATH"; then
+- :
+- elif test -d "$OPENSSL_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $OPENSSL_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $OPENSSL_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- elif test -d "$OPENSSL_PATH/lib"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $OPENSSL_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $OPENSSL_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- fi
+- OPENSSL_LIBS="$OPENSSL_LIBPATH -lssl -lcrypto"
+- else
+- OPENSSL_INCLUDE=""
+- OPENSSL_LIBS="-lssl -lcrypto"
+- in_path=
+- fi
+- echo "$as_me:$LINENO: checking for libssl$in_path" >&5
+-echo $ECHO_N "checking for libssl$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_openssl+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- CPPFLAGS=" $OPENSSL_INCLUDE $orig_CPPFLAGS"
+- LIBS="$OPENSSL_LIBS $orig_LIBS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <openssl/ssl.h>
+-int
+-main ()
+-{
+-SSL_library_init();
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_lib_openssl=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_openssl=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_openssl" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_openssl" >&6
+- if test "$ncbi_cv_lib_openssl" = "no"; then
+- if test "${with_openssl:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-openssl explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-openssl explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- fi
+- if test "$with_openssl" = "no"; then
+- OPENSSL_PATH="No_OPENSSL"
+- OPENSSL_INCLUDE=
+- OPENSSL_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}OPENSSL"; WithPackagesSep=" "
+- OPENSSL_INCLUDE=" $OPENSSL_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBOPENSSL 1
+-_ACEOF
+-
+- fi
+-
+-
+-
+-
+-OPENSSL_STATIC_LIBS=$OPENSSL_LIBS
+-for d in `echo " $OPENSSL_LIBS" | fmt -w 1 | sed -ne 's/^ *-L//p'` \
+- /usr/local/lib${bit64_sfx} /usr/local/lib /usr/lib${bit64_sfx} /usr/lib; do
+- if test -f $d/libssl.a -a -f $d/libcrypto.a; then
+- OPENSSL_STATIC_LIBS="$d/libssl.a $d/libcrypto.a"
+- break
+- elif test -f $d/libssl.so -o -f $d/libssl.dylib; then
+- break
+- fi
+-done
+-
+-if test -n "$GNUTLS_LIBS"; then
+- TLS_INCLUDE=$GNUTLS_INCLUDE
+- TLS_LIBS=$GNUTLS_LIBS
+-else
+- TLS_INCLUDE=$OPENSSL_INCLUDE
+- TLS_LIBS=$OPENSSL_LIBS
+-fi
+-
+-
+-case "$with_krb5" in
+- no ) ac_cv_path_KRB5_CONFIG=no ;;
+- yes | '' ) : ${KRB5_PATH=/usr/kerberos} ;;
+- * ) KRB5_PATH=$with_krb5 ;;
+-esac
+-# Extract the first word of "krb5-config", so it can be a program name with args.
+-set dummy krb5-config; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_path_KRB5_CONFIG+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- case $KRB5_CONFIG in
+- [\\/]* | ?:[\\/]*)
+- ac_cv_path_KRB5_CONFIG="$KRB5_CONFIG" # Let the user override the test with a path.
+- ;;
+- *)
+- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-as_dummy="${KRB5_BIN-$KRB5_PATH/bin}:$PATH"
+-for as_dir in $as_dummy
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_path_KRB5_CONFIG="$as_dir/$ac_word$ac_exec_ext"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
+- fi
+-done
+-done
+-
+- ;;
+-esac
+-fi
+-KRB5_CONFIG=$ac_cv_path_KRB5_CONFIG
+-
+-if test -n "$KRB5_CONFIG"; then
+- echo "$as_me:$LINENO: result: $KRB5_CONFIG" >&5
+-echo "${ECHO_T}$KRB5_CONFIG" >&6
+-else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
+-fi
+-
+-
+-if test "x$with_krb5" != xno; then
+- if test -x "$KRB5_CONFIG"; then
+- KRB5_PATH=`$KRB5_CONFIG --prefix`
+- KRB5_INCLUDE=`$KRB5_CONFIG --cflags | \
+- sed -e 's/$/ /; s,-I/usr/include ,,'`
+- KRB5_CONFIG_LIBS=`$KRB5_CONFIG --libs gssapi | \
+- sed -e 's/^/ /; s/ -[^Ll][^ ]*//g'`
+- fi
+-else
+- KRB5_CONFIG_LIBS=$KRB5_LIBS
+-fi
+-if test "$with_krb5" != "no"; then
+- case "$with_krb5" in
+- yes | "" ) ;;
+- * ) KRB5_PATH=$with_krb5 ;;
+- esac
+- if test -d "$KRB5_PATH"; then
+- in_path=" in $KRB5_PATH"
+- if test -z "$KRB5_INCLUDE" -a -d "$KRB5_PATH/include"; then
+- KRB5_INCLUDE="-I$KRB5_PATH/include"
+- fi
+- if test -n "$KRB5_LIBPATH"; then
+- :
+- elif test -d "$KRB5_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $KRB5_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- KRB5_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $KRB5_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- elif test -d "$KRB5_PATH/lib"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $KRB5_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- KRB5_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $KRB5_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- fi
+- KRB5_LIBS="$KRB5_LIBPATH -lgssapi_krb5 $KRB5_CONFIG_LIBS"
+- else
+- KRB5_INCLUDE=""
+- KRB5_LIBS="-lgssapi_krb5 $KRB5_CONFIG_LIBS"
+- in_path=
+- fi
+- echo "$as_me:$LINENO: checking for libgssapi_krb5$in_path" >&5
+-echo $ECHO_N "checking for libgssapi_krb5$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_krb5+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- CPPFLAGS=" $KRB5_INCLUDE $orig_CPPFLAGS"
+- LIBS="$KRB5_LIBS $orig_LIBS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <time.h>
+-extern "C" {
+-#include <gssapi/gssapi_krb5.h>
+-}
+-int
+-main ()
+-{
+-OM_uint32 min_stat;
+- gss_buffer_desc buf;
+- gss_release_buffer(&min_stat, &buf);
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_lib_krb5=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_krb5=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_krb5" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_krb5" >&6
+- if test "$ncbi_cv_lib_krb5" = "no"; then
+- if test "${with_krb5:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-krb5 explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-krb5 explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- fi
+- if test "$with_krb5" = "no"; then
+- KRB5_PATH="No_KRB5"
+- KRB5_INCLUDE=
+- KRB5_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}KRB5"; WithPackagesSep=" "
+- KRB5_INCLUDE=" $KRB5_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBKRB5 1
+-_ACEOF
+-
+- fi
+-
+-
+-
+-if test "x$with_krb5" != xno; then
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- KRB5_LIBS=`echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`
+- else
+- KRB5_LIBS=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
+- case "$x" in
+- -L*)
+- KRB5_LIBS="$KRB5_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+- done
+- KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}"
+- fi
+-fi
+-
+-
+-if test "$with_curl" != "no"; then
+- case "$with_curl" in
+- yes | "" ) ;;
+- * ) CURL_PATH=$with_curl ;;
+- esac
+- if test -d "$CURL_PATH"; then
+- in_path=" in $CURL_PATH"
+- if test -z "$CURL_INCLUDE" -a -d "$CURL_PATH/include"; then
+- CURL_INCLUDE="-I$CURL_PATH/include"
+- fi
+- if test -n "$CURL_LIBPATH"; then
+- :
+- elif test -d "$CURL_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $CURL_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- CURL_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $CURL_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- elif test -d "$CURL_PATH/lib"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $CURL_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- CURL_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $CURL_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- fi
+- CURL_LIBS="$CURL_LIBPATH -lcurl "
+- else
+- CURL_INCLUDE=""
+- CURL_LIBS="-lcurl "
+- in_path=
+- fi
+- echo "$as_me:$LINENO: checking for libcurl$in_path" >&5
+-echo $ECHO_N "checking for libcurl$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_curl+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- CPPFLAGS=" $CURL_INCLUDE $orig_CPPFLAGS"
+- LIBS="$CURL_LIBS $orig_LIBS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <curl/curl.h>
+-int
+-main ()
+-{
+-char* v = curl_version();
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_lib_curl=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_curl=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_curl" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_curl" >&6
+- if test "$ncbi_cv_lib_curl" = "no"; then
+- if test "${with_curl:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-curl explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-curl explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- fi
+- if test "$with_curl" = "no"; then
+- CURL_PATH="No_CURL"
+- CURL_INCLUDE=
+- CURL_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}CURL"; WithPackagesSep=" "
+- CURL_INCLUDE=" $CURL_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBCURL 1
++#define HAVE_LIBCURL 1
+ _ACEOF
+
+ fi
+@@ -23074,8 +26591,8 @@
+ SYBASE_LIBPATH="$SYBASE_PATH/${sybase_lib}"
+ syb_sfx=$bit64_sfx
+ if test "$with_mt" = "yes" ; then
+- echo "$as_me:$LINENO: checking for reentrant Sybase libraries" >&5
+-echo $ECHO_N "checking for reentrant Sybase libraries... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for reentrant Sybase libraries" >&5
++echo $ECHO_N "checking for reentrant Sybase libraries... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_sybase_r+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23085,8 +26602,8 @@
+ ncbi_cv_lib_sybase_r=no
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase_r" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sybase_r" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase_r" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sybase_r" >&6; }
+ if test $ncbi_cv_lib_sybase_r = yes; then
+ syb_sfx=_r$bit64_sfx
+ fi
+@@ -23164,8 +26681,8 @@
+ SYBASE_DBLIBS="$SYBASE_LPATH $SYBASE_DBLIBS"
+ SYBASE_DLLS="$SYBASE_DLLLIST"
+
+- echo "$as_me:$LINENO: checking for Sybase in $SYBASE_PATH" >&5
+-echo $ECHO_N "checking for Sybase in $SYBASE_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Sybase${SYBASE_PATH:+ in $SYBASE_PATH}" >&5
++echo $ECHO_N "checking for Sybase${SYBASE_PATH:+ in $SYBASE_PATH}... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_sybase+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23187,24 +26704,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -23215,11 +26744,12 @@
+
+ ncbi_cv_lib_sybase=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sybase" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sybase" >&6; }
+
+ if test "$ncbi_cv_lib_sybase" = yes; then
+ WithPackages="$WithPackages${WithPackagesSep}Sybase"; WithPackagesSep=" "
+@@ -23236,8 +26766,8 @@
+
+ fi
+ if test "$with_dbapi" != no -a -f ${real_srcdir}/src/objtools/data_loaders/genbank/pubseq/Makefile.ncbi_xreader_pubseqos.lib ; then
+- echo "$as_me:$LINENO: checking for PubSeq service availability" >&5
+-echo $ECHO_N "checking for PubSeq service availability... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for PubSeq service availability" >&5
++echo $ECHO_N "checking for PubSeq service availability... $ECHO_C" >&6; }
+ if test "${ncbi_cv_db_pubseq+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23247,8 +26777,8 @@
+ ncbi_cv_db_pubseq=no
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_db_pubseq" >&5
+-echo "${ECHO_T}$ncbi_cv_db_pubseq" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_db_pubseq" >&5
++echo "${ECHO_T}$ncbi_cv_db_pubseq" >&6; }
+ if test "$ncbi_cv_db_pubseq" = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -23263,8 +26793,8 @@
+ fi
+
+ SYBASE_DBLIBS="$SYBASE_LPATH -lsybdb${bit64_sfx}"
+- echo "$as_me:$LINENO: checking for Sybase DBLib" >&5
+-echo $ECHO_N "checking for Sybase DBLib... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Sybase DBLib" >&5
++echo $ECHO_N "checking for Sybase DBLib... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_sybdb+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23292,24 +26822,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -23320,11 +26862,12 @@
+
+ ncbi_cv_lib_sybdb=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybdb" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sybdb" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybdb" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sybdb" >&6; }
+ if test "$ncbi_cv_lib_sybdb" = yes; then
+ WithPackages="$WithPackages${WithPackagesSep}DBLib"; WithPackagesSep=" "
+
+@@ -23431,8 +26974,8 @@
+ echo "$as_me: Using bundled FreeTDS (version $ftds_ver) from $FTDS_PATH" >&6;}
+ else
+ FTDS_LIBS="$FTDS_CTLIBS"
+- echo "$as_me:$LINENO: checking for FreeTDS in $FTDS_PATH" >&5
+-echo $ECHO_N "checking for FreeTDS in $FTDS_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for FreeTDS${FTDS_PATH:+ in $FTDS_PATH}" >&5
++echo $ECHO_N "checking for FreeTDS${FTDS_PATH:+ in $FTDS_PATH}... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_freetds+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23463,24 +27006,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -23491,11 +27046,12 @@
+
+ ncbi_cv_lib_freetds=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetds" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_freetds" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetds" >&5
++echo "${ECHO_T}$ncbi_cv_lib_freetds" >&6; }
+ if test "$ncbi_cv_lib_freetds" = "no"; then
+ # Don't panic when using partial trees lacking dbapi/driver/ftdsN.
+ if test "${with_ftds:=no}" != no; then
+@@ -23548,8 +27104,8 @@
+ : ${MYSQL_BINPATH=$MYSQL_PATH/bin}
+ # Extract the first word of "mysql_config", so it can be a program name with args.
+ set dummy mysql_config; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_mysql_config+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23565,40 +27121,41 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_mysql_config="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ mysql_config=$ac_cv_path_mysql_config
+-
+ if test -n "$mysql_config"; then
+- echo "$as_me:$LINENO: result: $mysql_config" >&5
+-echo "${ECHO_T}$mysql_config" >&6
++ { echo "$as_me:$LINENO: result: $mysql_config" >&5
++echo "${ECHO_T}$mysql_config" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -n "$mysql_config" ; then
+ : ${MYSQL_BINPATH=`dirname $mysql_config`}
+ # Kill off single quotes, due to later requoting
+ : ${MYSQL_INCLUDE=`$mysql_config --include | tr -d \'`}
+ if test -z "${MYSQL_LIBS+set}"; then
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- MYSQL_LIBS=`$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; "`
++ MYSQL_LIBS=`$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; $no_usr_lib"`
+ else
+ MYSQL_LIBS=
+ ncbi_rp_L_sep=
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; "`; do
++ for x in `$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; $no_usr_lib"`; do
+ case "$x" in
+ -L*)
+ MYSQL_LIBS="$MYSQL_LIBS${ncbi_rp_L_sep}$x"
+@@ -23617,8 +27174,8 @@
+ MYSQL_LIBS="$MYSQL_LIBS${ncbi_rp_R_flags}"
+ fi
+ fi
+- echo "$as_me:$LINENO: checking whether MySQL works" >&5
+-echo $ECHO_N "checking whether MySQL works... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether MySQL works" >&5
++echo $ECHO_N "checking whether MySQL works... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_mysql+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23640,24 +27197,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -23668,11 +27237,12 @@
+
+ ncbi_cv_lib_mysql=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_mysql" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_mysql" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_mysql" >&5
++echo "${ECHO_T}$ncbi_cv_lib_mysql" >&6; }
+ if test "$ncbi_cv_lib_mysql" = no; then
+ if test "${with_mysql:=no}" != no; then
+ { { echo "$as_me:$LINENO: error: --with-mysql explicitly specified, but no usable version found." >&5
+@@ -23706,7 +27276,6 @@
+ if test "$with_bdb" != "no" ; then
+ case "$with_bdb" in
+ yes | "" )
+- : ${BERKELEYDB_PATH:="$NCBI/BerkeleyDB"}
+ ;;
+ */*)
+ BERKELEYDB_PATH=$with_bdb
+@@ -23794,8 +27363,8 @@
+ else
+ BERKELEYDB_STATIC_LIBS=${BERKELEYDB_LIBS}
+ fi
+- echo "$as_me:$LINENO: checking for Berkeley DB libraries in $BERKELEYDB_PATH" >&5
+-echo $ECHO_N "checking for Berkeley DB libraries in $BERKELEYDB_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Berkeley DB libraries${BERKELEYDB_PATH:+ in $BERKELEYDB_PATH}" >&5
++echo $ECHO_N "checking for Berkeley DB libraries${BERKELEYDB_PATH:+ in $BERKELEYDB_PATH}... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_berkeley_db+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23817,24 +27386,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -23845,11 +27426,12 @@
+
+ ncbi_cv_lib_berkeley_db=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_berkeley_db" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db" >&5
++echo "${ECHO_T}$ncbi_cv_lib_berkeley_db" >&6; }
+ if test "$ncbi_cv_lib_berkeley_db" = "no"; then
+ if test "${with_bdb:=no}" != no; then
+ { { echo "$as_me:$LINENO: error: --with-bdb explicitly specified, but no usable version found." >&5
+@@ -23857,8 +27439,8 @@
+ { (exit 1); exit 1; }; }
+ fi
+ else
+- echo "$as_me:$LINENO: checking Berkeley DB version (4.3 or newer required)" >&5
+-echo $ECHO_N "checking Berkeley DB version (4.3 or newer required)... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking Berkeley DB version (4.3 or newer required)" >&5
++echo $ECHO_N "checking Berkeley DB version (4.3 or newer required)... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_berkeley_db_version+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23880,8 +27462,8 @@
+ rm -f contest*
+
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_version" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_version" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_version" >&5
++echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_version" >&6; }
+ case "$ncbi_cv_lib_berkeley_db_version" in
+ 1.* | 2.* | 3.* | 4.[0-2].* )
+ { echo "$as_me:$LINENO: WARNING: Your Berkeley DB version is too old to use. (Needed >= 4.3.)" >&5
+@@ -23948,8 +27530,8 @@
+ else
+ BERKELEYDB_CXX_STATIC_LIBS=${BERKELEYDB_CXX_LIBS}
+ fi
+- echo "$as_me:$LINENO: checking for native Berkeley DB C++ wrappers (optional)" >&5
+-echo $ECHO_N "checking for native Berkeley DB C++ wrappers (optional)... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for native Berkeley DB C++ wrappers (optional)" >&5
++echo $ECHO_N "checking for native Berkeley DB C++ wrappers (optional)... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_berkeley_db_cxx+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -23971,24 +27553,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -23999,11 +27593,12 @@
+
+ ncbi_cv_lib_berkeley_db_cxx=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_cxx" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_cxx" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_cxx" >&5
++echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_cxx" >&6; }
+ if test "$ncbi_cv_lib_berkeley_db_cxx" = "yes"; then
+ WithPackages="$WithPackages${WithPackagesSep}BerkeleyDB++"; WithPackagesSep=" "
+
+@@ -24052,8 +27647,8 @@
+ fi
+ CPPFLAGS="$ODBC_INCLUDE $orig_CPPFLAGS"
+ LIBS="$ODBC_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for ODBC libraries in $ODBC_PATH" >&5
+-echo $ECHO_N "checking for ODBC libraries in $ODBC_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for ODBC libraries${ODBC_PATH:+ in $ODBC_PATH}" >&5
++echo $ECHO_N "checking for ODBC libraries${ODBC_PATH:+ in $ODBC_PATH}... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_odbc+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24074,24 +27669,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24102,11 +27709,12 @@
+
+ ncbi_cv_lib_odbc=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_odbc" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_odbc" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_odbc" >&5
++echo "${ECHO_T}$ncbi_cv_lib_odbc" >&6; }
+ if test "$ncbi_cv_lib_odbc" = "no"; then
+ if test "${with_odbc:=no}" != no; then
+ { { echo "$as_me:$LINENO: error: --with-odbc explicitly specified, but no usable version found." >&5
+@@ -24119,9 +27727,9 @@
+ for ac_header in odbcss.h
+ do
+ as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_header" >&5
+-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_Header+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_header" >&5
++echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -24135,24 +27743,36 @@
+ #include <$ac_header>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24163,10 +27783,12 @@
+
+ eval "$as_ac_Header=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
++ac_res=`eval echo '${'$as_ac_Header'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_Header'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
+@@ -24181,9 +27803,9 @@
+ for ac_func in SQLGetPrivateProfileString
+ do
+ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -24209,53 +27831,59 @@
+
+ #undef $ac_func
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char $ac_func ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
++#if defined __stub_$ac_func || defined __stub___$ac_func
+ choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != $ac_func;
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24266,11 +27894,13 @@
+
+ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
+ if test `eval echo '${'$as_ac_var'}'` = yes; then
+ cat >>confdefs.h <<_ACEOF
+ #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+@@ -24279,8 +27909,8 @@
+ fi
+ done
+
+- echo "$as_me:$LINENO: checking for SQLLEN" >&5
+-echo $ECHO_N "checking for SQLLEN... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for SQLLEN" >&5
++echo $ECHO_N "checking for SQLLEN... $ECHO_C" >&6; }
+ if test "${ac_cv_type_SQLLEN+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24292,36 +27922,49 @@
+ /* end confdefs.h. */
+ #include <sqltypes.h>
+
++typedef SQLLEN ac__type_new_;
+ int
+ main ()
+ {
+-if ((SQLLEN *) 0)
++if ((ac__type_new_ *) 0)
+ return 0;
+-if (sizeof (SQLLEN))
++if (sizeof (ac__type_new_))
+ return 0;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24332,10 +27975,11 @@
+
+ ac_cv_type_SQLLEN=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_type_SQLLEN" >&5
+-echo "${ECHO_T}$ac_cv_type_SQLLEN" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_type_SQLLEN" >&5
++echo "${ECHO_T}$ac_cv_type_SQLLEN" >&6; }
+ if test $ac_cv_type_SQLLEN = yes; then
+
+ cat >>confdefs.h <<_ACEOF
+@@ -24346,8 +27990,8 @@
+ fi
+
+
+- echo "$as_me:$LINENO: checking whether SQLColAttribute's last argument is an SQLLEN *" >&5
+-echo $ECHO_N "checking whether SQLColAttribute's last argument is an SQLLEN *... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether SQLColAttribute's last argument is an SQLLEN *" >&5
++echo $ECHO_N "checking whether SQLColAttribute's last argument is an SQLLEN *... $ECHO_C" >&6; }
+ if test "${ncbi_cv_func_sqlcolattribute_sqllen+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24370,24 +28014,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24398,10 +28054,11 @@
+
+ ncbi_cv_func_sqlcolattribute_sqllen=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_sqlcolattribute_sqllen" >&5
+-echo "${ECHO_T}$ncbi_cv_func_sqlcolattribute_sqllen" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_func_sqlcolattribute_sqllen" >&5
++echo "${ECHO_T}$ncbi_cv_func_sqlcolattribute_sqllen" >&6; }
+ if test $ncbi_cv_func_sqlcolattribute_sqllen = yes; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -24442,8 +28099,8 @@
+ esac
+ # Extract the first word of "python", so it can be a program name with args.
+ set dummy python; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_PYTHON+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24459,27 +28116,28 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_PYTHON="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ PYTHON=$ac_cv_path_PYTHON
+-
+ if test -n "$PYTHON"; then
+- echo "$as_me:$LINENO: result: $PYTHON" >&5
+-echo "${ECHO_T}$PYTHON" >&6
++ { echo "$as_me:$LINENO: result: $PYTHON" >&5
++echo "${ECHO_T}$PYTHON" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -x "$PYTHON"; then
+ PYTHON_VERSION=`$PYTHON -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
+ else
+@@ -24512,8 +28170,8 @@
+ fi
+ CPPFLAGS="$PYTHON_INCLUDE $orig_CPPFLAGS"
+ LIBS="$PYTHON_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for usable Python $PYTHON_VERSION libraries" >&5
+-echo $ECHO_N "checking for usable Python $PYTHON_VERSION libraries... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for usable Python $PYTHON_VERSION libraries" >&5
++echo $ECHO_N "checking for usable Python $PYTHON_VERSION libraries... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_python+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24540,24 +28198,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24568,11 +28238,12 @@
+
+ ncbi_cv_lib_python=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_python" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_python" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python" >&5
++echo "${ECHO_T}$ncbi_cv_lib_python" >&6; }
+ else
+ ncbi_cv_lib_python=no
+ fi
+@@ -24592,8 +28263,8 @@
+
+ # Extract the first word of "python2.3", so it can be a program name with args.
+ set dummy python2.3; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_PYTHON23+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24609,27 +28280,28 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_PYTHON23="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ PYTHON23=$ac_cv_path_PYTHON23
+-
+ if test -n "$PYTHON23"; then
+- echo "$as_me:$LINENO: result: $PYTHON23" >&5
+-echo "${ECHO_T}$PYTHON23" >&6
++ { echo "$as_me:$LINENO: result: $PYTHON23" >&5
++echo "${ECHO_T}$PYTHON23" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -x "$PYTHON23"; then
+ PYTHON23_VERSION=`$PYTHON23 -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
+ else
+@@ -24662,8 +28334,8 @@
+ fi
+ CPPFLAGS="$PYTHON23_INCLUDE $orig_CPPFLAGS"
+ LIBS="$PYTHON23_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for usable Python $PYTHON23_VERSION libraries" >&5
+-echo $ECHO_N "checking for usable Python $PYTHON23_VERSION libraries... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for usable Python $PYTHON23_VERSION libraries" >&5
++echo $ECHO_N "checking for usable Python $PYTHON23_VERSION libraries... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_python23+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24690,24 +28362,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24718,11 +28402,12 @@
+
+ ncbi_cv_lib_python23=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_python23" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_python23" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python23" >&5
++echo "${ECHO_T}$ncbi_cv_lib_python23" >&6; }
+ else
+ ncbi_cv_lib_python23=no
+ fi
+@@ -24743,8 +28428,8 @@
+ : ${PYTHON_PATH:="/usr/local/python-2.4.4"}
+ # Extract the first word of "python2.4", so it can be a program name with args.
+ set dummy python2.4; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_PYTHON24+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24760,27 +28445,28 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_PYTHON24="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ PYTHON24=$ac_cv_path_PYTHON24
+-
+ if test -n "$PYTHON24"; then
+- echo "$as_me:$LINENO: result: $PYTHON24" >&5
+-echo "${ECHO_T}$PYTHON24" >&6
++ { echo "$as_me:$LINENO: result: $PYTHON24" >&5
++echo "${ECHO_T}$PYTHON24" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -x "$PYTHON24"; then
+ PYTHON24_VERSION=`$PYTHON24 -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
+ else
+@@ -24813,8 +28499,8 @@
+ fi
+ CPPFLAGS="$PYTHON24_INCLUDE $orig_CPPFLAGS"
+ LIBS="$PYTHON24_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for usable Python $PYTHON24_VERSION libraries" >&5
+-echo $ECHO_N "checking for usable Python $PYTHON24_VERSION libraries... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for usable Python $PYTHON24_VERSION libraries" >&5
++echo $ECHO_N "checking for usable Python $PYTHON24_VERSION libraries... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_python24+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24841,24 +28527,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -24869,11 +28567,12 @@
+
+ ncbi_cv_lib_python24=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_python24" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_python24" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python24" >&5
++echo "${ECHO_T}$ncbi_cv_lib_python24" >&6; }
+ else
+ ncbi_cv_lib_python24=no
+ fi
+@@ -24893,8 +28592,8 @@
+
+ # Extract the first word of "python2.5", so it can be a program name with args.
+ set dummy python2.5; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_PYTHON25+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24910,27 +28609,28 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_PYTHON25="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ PYTHON25=$ac_cv_path_PYTHON25
+-
+ if test -n "$PYTHON25"; then
+- echo "$as_me:$LINENO: result: $PYTHON25" >&5
+-echo "${ECHO_T}$PYTHON25" >&6
++ { echo "$as_me:$LINENO: result: $PYTHON25" >&5
++echo "${ECHO_T}$PYTHON25" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -x "$PYTHON25"; then
+ PYTHON25_VERSION=`$PYTHON25 -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
+ else
+@@ -24963,8 +28663,8 @@
+ fi
+ CPPFLAGS="$PYTHON25_INCLUDE $orig_CPPFLAGS"
+ LIBS="$PYTHON25_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for usable Python $PYTHON25_VERSION libraries" >&5
+-echo $ECHO_N "checking for usable Python $PYTHON25_VERSION libraries... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for usable Python $PYTHON25_VERSION libraries" >&5
++echo $ECHO_N "checking for usable Python $PYTHON25_VERSION libraries... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_python25+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -24991,24 +28691,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -25019,11 +28731,12 @@
+
+ ncbi_cv_lib_python25=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_python25" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_python25" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python25" >&5
++echo "${ECHO_T}$ncbi_cv_lib_python25" >&6; }
+ else
+ ncbi_cv_lib_python25=no
+ fi
+@@ -25078,8 +28791,8 @@
+ esac
+ # Extract the first word of "perl", so it can be a program name with args.
+ set dummy perl; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path_PERL+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25095,30 +28808,31 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_PERL="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+ fi
+ PERL=$ac_cv_path_PERL
+-
+ if test -n "$PERL"; then
+- echo "$as_me:$LINENO: result: $PERL" >&5
+-echo "${ECHO_T}$PERL" >&6
++ { echo "$as_me:$LINENO: result: $PERL" >&5
++echo "${ECHO_T}$PERL" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ if test -x "$PERL"; then
+ PERL_ARCHLIB=`$PERL -MConfig -e 'print \$Config{archlibexp};'`
+- PERL_FLAGS=`$PERL -MConfig -e 'print \$Config{cppflags};'`
++ PERL_FLAGS=`$PERL -MConfig -e 'print join " ", grep /^-[DI]/, split /\\s+/, \$Config{cppflags};'`
+ PERL_INCLUDE="-I$PERL_ARCHLIB/CORE $PERL_FLAGS"
+ PERL_DEPS=`$PERL -MConfig -e 'print \$Config{libs};'`
+ ncbi_rp_L_flags=
+@@ -25143,8 +28857,8 @@
+ fi
+ CPPFLAGS="$PERL_INCLUDE $orig_CPPFLAGS"
+ LIBS="$PERL_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for usable Perl libraries" >&5
+-echo $ECHO_N "checking for usable Perl libraries... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for usable Perl libraries" >&5
++echo $ECHO_N "checking for usable Perl libraries... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_perl+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25166,24 +28880,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -25194,11 +28920,12 @@
+
+ ncbi_cv_lib_perl=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_perl" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_perl" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_perl" >&5
++echo "${ECHO_T}$ncbi_cv_lib_perl" >&6; }
+ fi
+ if test "$ncbi_cv_lib_perl" = yes; then
+ WithPackages="$WithPackages${WithPackagesSep}PERL"; WithPackagesSep=" "
+@@ -25236,8 +28963,8 @@
+ { (exit 1); exit 1; }; }
+ # Extract the first word of "$JAVAC", so it can be a program name with args.
+ set dummy $JAVAC; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
+ if test "${ac_cv_path__ACJNI_JAVAC+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25252,28 +28979,29 @@
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path__ACJNI_JAVAC="$as_dir/$ac_word$ac_exec_ext"
+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+ done
+ done
++IFS=$as_save_IFS
+
+ test -z "$ac_cv_path__ACJNI_JAVAC" && ac_cv_path__ACJNI_JAVAC="no"
+ ;;
+ esac
+ fi
+ _ACJNI_JAVAC=$ac_cv_path__ACJNI_JAVAC
+-
+ if test -n "$_ACJNI_JAVAC"; then
+- echo "$as_me:$LINENO: result: $_ACJNI_JAVAC" >&5
+-echo "${ECHO_T}$_ACJNI_JAVAC" >&6
++ { echo "$as_me:$LINENO: result: $_ACJNI_JAVAC" >&5
++echo "${ECHO_T}$_ACJNI_JAVAC" >&6; }
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
+ test "x$_ACJNI_JAVAC" = xno && { { echo "$as_me:$LINENO: error: $JAVAC could not be found in path" >&5
+ echo "$as_me: error: $JAVAC could not be found in path" >&2;}
+ { (exit 1); exit 1; }; }
+@@ -25282,16 +29010,16 @@
+ # find the include directory relative to the javac executable
+ _cur=""$_ACJNI_JAVAC""
+ while ls -ld "$_cur" 2>/dev/null | grep " -> " >/dev/null; do
+- echo "$as_me:$LINENO: checking symlink for $_cur" >&5
+-echo $ECHO_N "checking symlink for $_cur... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking symlink for $_cur" >&5
++echo $ECHO_N "checking symlink for $_cur... $ECHO_C" >&6; }
+ _slink=`ls -ld "$_cur" | sed 's/.* -> //'`
+ case "$_slink" in
+ /*) _cur="$_slink";;
+ # 'X' avoids triggering unwanted echo options.
+ *) _cur=`echo "X$_cur" | sed -e 's/^X//' -e 's:[^/]*$::'`"$_slink";;
+ esac
+- echo "$as_me:$LINENO: result: $_cur" >&5
+-echo "${ECHO_T}$_cur" >&6
++ { echo "$as_me:$LINENO: result: $_cur" >&5
++echo "${ECHO_T}$_cur" >&6; }
+ done
+ _ACJNI_FOLLOWED="$_cur"
+
+@@ -25343,17 +29071,17 @@
+ echo "$as_me: setting JDK_INCLUDE = $JDK_INCLUDE" >&6;}
+ CPPFLAGS="$JDK_INCLUDE $orig_CPPFLAGS"
+ if test "${ac_cv_header_jni_h+set}" = set; then
+- echo "$as_me:$LINENO: checking for jni.h" >&5
+-echo $ECHO_N "checking for jni.h... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for jni.h" >&5
++echo $ECHO_N "checking for jni.h... $ECHO_C" >&6; }
+ if test "${ac_cv_header_jni_h+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
+-echo "${ECHO_T}$ac_cv_header_jni_h" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
++echo "${ECHO_T}$ac_cv_header_jni_h" >&6; }
+ else
+ # Is the header compilable?
+-echo "$as_me:$LINENO: checking jni.h usability" >&5
+-echo $ECHO_N "checking jni.h usability... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking jni.h usability" >&5
++echo $ECHO_N "checking jni.h usability... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -25364,24 +29092,36 @@
+ #include <jni.h>
+ _ACEOF
+ rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -25392,13 +29132,14 @@
+
+ ac_header_compiler=no
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
+
+ # Is the header present?
+-echo "$as_me:$LINENO: checking jni.h presence" >&5
+-echo $ECHO_N "checking jni.h presence... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking jni.h presence" >&5
++echo $ECHO_N "checking jni.h presence... $ECHO_C" >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -25407,8 +29148,13 @@
+ /* end confdefs.h. */
+ #include <jni.h>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -25432,9 +29178,10 @@
+
+ ac_header_preproc=no
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
+
+ # So? What about this header?
+ case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+@@ -25458,25 +29205,23 @@
+ echo "$as_me: WARNING: jni.h: proceeding with the preprocessor's result" >&2;}
+ { echo "$as_me:$LINENO: WARNING: jni.h: in the future, the compiler will take precedence" >&5
+ echo "$as_me: WARNING: jni.h: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
++ ( cat <<\_ASBOX
+ ## ---------------------------------------- ##
+ ## Report this to cpp-core@ncbi.nlm.nih.gov ##
+ ## ---------------------------------------- ##
+ _ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
++ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+ esac
+-echo "$as_me:$LINENO: checking for jni.h" >&5
+-echo $ECHO_N "checking for jni.h... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for jni.h" >&5
++echo $ECHO_N "checking for jni.h... $ECHO_C" >&6; }
+ if test "${ac_cv_header_jni_h+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_cv_header_jni_h=$ac_header_preproc
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
+-echo "${ECHO_T}$ac_cv_header_jni_h" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
++echo "${ECHO_T}$ac_cv_header_jni_h" >&6; }
+
+ fi
+ if test $ac_cv_header_jni_h = yes; then
+@@ -25500,9 +29245,7 @@
+
+ ## Boost
+ if test "$with_boost" != "no"; then
+- if test "${with_boost-yes}" = yes; then
+- : ${BOOST_PATH=$NCBI/boost}
+- else
++ if test "${with_boost-yes}" != yes; then
+ BOOST_PATH=$with_boost
+ fi
+ if test -d "$BOOST_PATH"; then
+@@ -25560,8 +29303,8 @@
+ $as_unset ncbi_cv_lib_boost_thread || test "${ncbi_cv_lib_boost_thread+set}" != set || { ncbi_cv_lib_boost_thread=; export ncbi_cv_lib_boost_thread; }
+ fi
+ fi
+- echo "$as_me:$LINENO: checking Boost version" >&5
+-echo $ECHO_N "checking Boost version... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking Boost version" >&5
++echo $ECHO_N "checking Boost version... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_boost_version+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25583,22 +29326,27 @@
+ rm -f contest*
+
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_version" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_boost_version" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_version" >&5
++echo "${ECHO_T}$ncbi_cv_lib_boost_version" >&6; }
+ if test -d `echo $BOOST_INCLUDE | sed -e 's/^-I//'`/boost-${ncbi_cv_lib_boost_version}/boost; then
+ BOOST_INCLUDE=$BOOST_INCLUDE/boost-${ncbi_cv_lib_boost_version}
+ fi
+- case "$ncbi_compiler" in
+- MIPSPRO)
++ case "$compiler:$ncbi_compiler_ver" in
++ MIPSpro*)
+ BOOST_INCLUDE="$BOOST_INCLUDE $BOOST_INCLUDE/boost/compatibility/cpp_c_headers"
+ ;;
+- WORKSHOP)
++ WorkShop*)
+ # Boost.Test's macros yield a *lot* of spurious "should not initialize
+ # a non-const reference with a temporary" warnings, to the point of
+ # overwhelming the compiler in some cases; turn them off altogether
+ # when using Boost at all.
+ BOOST_INCLUDE="$BOOST_INCLUDE -erroff=reftotemp"
+ ;;
++ GCC*:4[7-9]* | GCC*:5*)
++ # Some portions of Boost also have a lot of "unused" typedefs
++ # from concept checking.
++ BOOST_INCLUDE="$BOOST_INCLUDE -Wno-unused-local-typedefs"
++ ;;
+ esac
+ case "$ncbi_cv_lib_boost_version" in
+ 0_* | 1_[0-9] | 1_[0-9]_* | 1_[0-2][0-9] | 1_[0-2][0-9]_* ) ;;
+@@ -25612,7 +29360,7 @@
+ fi
+ with_boost=no
+ ;;
+- 1_3[5-9] | 1_3[5-9]_* | 1_4* | 1_5[0-2] | 1_5[0-2]_* ) ;;
++ 1_3[5-9] | 1_3[5-9]_* | 1_4* | 1_5[0-3] | 1_5[0-3]_* ) ;;
+ '' ) with_boost=no ;;
+ * )
+ { echo "$as_me:$LINENO: WARNING: Untested Boost version; may prove incompatible." >&5
+@@ -25621,8 +29369,8 @@
+ echo "$as_me: WARNING: If so, please re-run this script with the flag --without-boost." >&2;}
+ ;;
+ esac
+- echo "$as_me:$LINENO: checking for Boost library name tag" >&5
+-echo $ECHO_N "checking for Boost library name tag... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Boost library name tag" >&5
++echo $ECHO_N "checking for Boost library name tag... $ECHO_C" >&6; }
+ case "$with_boost_tag" in
+ yes | "" )
+ case "$host_os:$ncbi_compiler" in
+@@ -25676,18 +29424,18 @@
+ fi
+
+ BOOST_TAG=$base$bsfx
+- echo "$as_me:$LINENO: result: $BOOST_TAG (autodetected)" >&5
+-echo "${ECHO_T}$BOOST_TAG (autodetected)" >&6
++ { echo "$as_me:$LINENO: result: $BOOST_TAG (autodetected)" >&5
++echo "${ECHO_T}$BOOST_TAG (autodetected)" >&6; }
+ ;;
+ no )
+ BOOST_TAG=""
+- echo "$as_me:$LINENO: result: none (by explicit request)" >&5
+-echo "${ECHO_T}none (by explicit request)" >&6
++ { echo "$as_me:$LINENO: result: none (by explicit request)" >&5
++echo "${ECHO_T}none (by explicit request)" >&6; }
+ ;;
+ *)
+ BOOST_TAG=$with_boost_tag
+- echo "$as_me:$LINENO: result: $BOOST_TAG (by explicit request)" >&5
+-echo "${ECHO_T}$BOOST_TAG (by explicit request)" >&6
++ { echo "$as_me:$LINENO: result: $BOOST_TAG (by explicit request)" >&5
++echo "${ECHO_T}$BOOST_TAG (by explicit request)" >&6; }
+ ;;
+ esac
+
+@@ -25701,8 +29449,10 @@
+ BOOST_REGEX_STATIC_LIBS=$BOOST_REGEX_LIBS
+ fi
+
+- echo "$as_me:$LINENO: checking for Boost.Regex in $BOOST_PATH" >&5
+-echo $ECHO_N "checking for Boost.Regex in $BOOST_PATH... $ECHO_C" >&6
++ in_path=${BOOST_PATH:+ in $BOOST_PATH}
++
++ { echo "$as_me:$LINENO: checking for Boost.Regex$in_path" >&5
++echo $ECHO_N "checking for Boost.Regex$in_path... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_boost_regex+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25724,24 +29474,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -25752,14 +29514,15 @@
+
+ ncbi_cv_lib_boost_regex=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_regex" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_boost_regex" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_regex" >&5
++echo "${ECHO_T}$ncbi_cv_lib_boost_regex" >&6; }
+
+- echo "$as_me:$LINENO: checking for Boost.Spirit in $BOOST_PATH" >&5
+-echo $ECHO_N "checking for Boost.Spirit in $BOOST_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Boost.Spirit$in_path" >&5
++echo $ECHO_N "checking for Boost.Spirit$in_path... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_boost_spirit+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25781,24 +29544,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -25809,11 +29584,12 @@
+
+ ncbi_cv_lib_boost_spirit=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_spirit" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_boost_spirit" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_spirit" >&5
++echo "${ECHO_T}$ncbi_cv_lib_boost_spirit" >&6; }
+
+ BOOST_SYSTEM_LIBS=-lboost_system${BOOST_TAG}
+ if test -f "$BOOST_LIBPATH_/libboost_system${BOOST_TAG}-static.a"; then
+@@ -25822,8 +29598,8 @@
+ BOOST_SYSTEM_STATIC_LIBS=$BOOST_SYSTEM_LIBS
+ fi
+
+- echo "$as_me:$LINENO: checking for Boost.System in $BOOST_PATH" >&5
+-echo $ECHO_N "checking for Boost.System in $BOOST_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Boost.System$in_path" >&5
++echo $ECHO_N "checking for Boost.System$in_path... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_boost_system+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25845,24 +29621,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -25875,11 +29663,91 @@
+ BOOST_SYSTEM_LIBS=
+ BOOST_SYSTEM_STATIC_LIBS=
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_system" >&5
++echo "${ECHO_T}$ncbi_cv_lib_boost_system" >&6; }
++
++ boost_fs_lib=-lboost_filesystem${BOOST_TAG}
++ if test -f "$BOOST_LIBPATH_/libboost_filesystem${BOOST_TAG}-static.a"; then
++ boost_fs_static_lib=-lboost_filesystem${BOOST_TAG}-static
++ else
++ boost_fs_static_lib=$boost_fs_lib
++ fi
++ BOOST_FILESYSTEM_LIBS="$boost_fs_lib $BOOST_SYSTEM_LIBS"
++ BOOST_FILESYSTEM_STATIC_LIBS="$boost_fs_static_lib $BOOST_SYSTEM_STATIC_LIBS"
++
++ { echo "$as_me:$LINENO: checking for Boost.Filesystem$in_path" >&5
++echo $ECHO_N "checking for Boost.Filesystem$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_boost_filesystem+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
++ LIBS="$BOOST_LIBPATH $BOOST_FILESYSTEM_LIBS $RT_LIBS $orig_LIBS"
++ cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++#include <boost/filesystem.hpp>
++int
++main ()
++{
++return boost::filesystem::portable_name("foo");
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ncbi_cv_lib_boost_filesystem=yes
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ncbi_cv_lib_boost_filesystem=no
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_system" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_boost_system" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_filesystem" >&5
++echo "${ECHO_T}$ncbi_cv_lib_boost_filesystem" >&6; }
+
+ BOOST_TEST_PEM_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}
+ if test -f "$BOOST_LIBPATH_/libboost_prg_exec_monitor${BOOST_TAG}-static.a"; then
+@@ -25906,8 +29774,8 @@
+ BOOST_TEST_TEM_LIBS=$BOOST_TEST_TEM_STATIC_LIBS
+ BOOST_TEST_UTF_LIBS=$BOOST_TEST_UTF_STATIC_LIBS
+
+- echo "$as_me:$LINENO: checking for Boost.Test in $BOOST_PATH" >&5
+-echo $ECHO_N "checking for Boost.Test in $BOOST_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Boost.Test$in_path" >&5
++echo $ECHO_N "checking for Boost.Test$in_path... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_boost_test+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -25940,24 +29808,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -25966,8 +29846,10 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ done
+ case "$found" in
+@@ -25977,8 +29859,8 @@
+ '' ) ncbi_cv_lib_boost_test=no ;;
+ esac
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_test" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_boost_test" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_test" >&5
++echo "${ECHO_T}$ncbi_cv_lib_boost_test" >&6; }
+
+ BOOST_THREAD_LIBS="-lboost_thread${BOOST_TAG} $BOOST_SYSTEM_LIBS"
+ if test -f "$BOOST_LIBPATH_/libboost_thread${BOOST_TAG}-static.a"; then
+@@ -25987,8 +29869,8 @@
+ BOOST_THREAD_STATIC_LIBS=$BOOST_THREAD_LIBS
+ fi
+
+- echo "$as_me:$LINENO: checking for Boost.Threads in $BOOST_PATH" >&5
+-echo $ECHO_N "checking for Boost.Threads in $BOOST_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for Boost.Threads$in_path" >&5
++echo $ECHO_N "checking for Boost.Threads$in_path... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_boost_thread+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -26010,24 +29892,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26038,21 +29932,33 @@
+
+ ncbi_cv_lib_boost_thread=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_thread" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_boost_thread" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_thread" >&5
++echo "${ECHO_T}$ncbi_cv_lib_boost_thread" >&6; }
+ else
+ BOOST_INCLUDE=
+ BOOST_LIBPATH=
+ BOOST_TAG=
++ ncbi_cv_lib_boost_filesystem=no
+ ncbi_cv_lib_boost_regex=no
+ ncbi_cv_lib_boost_spirit=no
++ ncbi_cv_lib_boost_system=no
+ ncbi_cv_lib_boost_test=no
+ ncbi_cv_lib_boost_thread=no
+ fi
+
++if test "$ncbi_cv_lib_boost_filesystem" != "no"; then
++ WithPackages="$WithPackages${WithPackagesSep}Boost.Filesystem"; WithPackagesSep=" "
++else
++ boost_fs_lib=
++ boost_fs_static_lib=
++ BOOST_FILESYSTEM_LIBS=
++ BOOST_FILESYSTEM_STATIC_LIBS=
++fi
++
+ if test "$ncbi_cv_lib_boost_regex" != "no"; then
+
+ cat >>confdefs.h <<\_ACEOF
+@@ -26122,7 +30028,10 @@
+
+ ## NCBI C Toolkit
+ if test "$with_ncbi_c" != "no" ; then
+- NCBI_C_PATH=${NCBI_C_PATH:="$NCBI"}
++ if test "${with_ncbi_c-yes}" != yes; then
++ NCBI_C_PATH=$with_ncbi_c
++ fi
++ : ${NCBI_C_PATH="$NCBI"}
+ if test "$ncbi_compiler" = ICC -a -d "$NCBI_C_PATH/ncbi_icc"; then
+ NCBI_C_PATH=$NCBI_C_PATH/ncbi_icc
+ fi
+@@ -26144,8 +30053,8 @@
+ NCBI_C_ncbi="-lncbi"
+ fi
+ NCBI_C_LIBPATH="-L$NCBI_C_LIBPATH"
+- echo "$as_me:$LINENO: checking for the NCBI C toolkit in $NCBI_C_PATH" >&5
+-echo $ECHO_N "checking for the NCBI C toolkit in $NCBI_C_PATH... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for the NCBI C toolkit${NCBI_C_PATH:+ in $NCBI_C_PATH}" >&5
++echo $ECHO_N "checking for the NCBI C toolkit${NCBI_C_PATH:+ in $NCBI_C_PATH}... $ECHO_C" >&6; }
+ if test "${ncbi_cv_lib_ctools+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -26167,24 +30076,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26195,11 +30116,12 @@
+
+ ncbi_cv_lib_ctools=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_ctools" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_ctools" >&6
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_ctools" >&5
++echo "${ECHO_T}$ncbi_cv_lib_ctools" >&6; }
+ if test "$ncbi_cv_lib_ctools" = no; then
+ if test "${with_ncbi_c:=no}" != no; then
+ { { echo "$as_me:$LINENO: error: --with-ncbi-c explicitly specified, but no usable version found." >&5
+@@ -26240,44 +30162,49 @@
+ cmp -s /usr/lib$bit64_sfx/$base $xlib || \
+ x_libraries=/usr/X11R6/lib$bit64_sfx x_includes=/usr/X11R6/include
+ fi
+-echo "$as_me:$LINENO: checking for X" >&5
+-echo $ECHO_N "checking for X... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for X" >&5
++echo $ECHO_N "checking for X... $ECHO_C" >&6; }
+
+
+-# Check whether --with-x or --without-x was given.
++# Check whether --with-x was given.
+ if test "${with_x+set}" = set; then
+- withval="$with_x"
++ withval=$with_x;
++fi
+
+-fi;
+ # $have_x is `yes', `no', `disabled', or empty when we do not yet know.
+ if test "x$with_x" = xno; then
+ # The user explicitly disabled X.
+ have_x=disabled
+ else
+- if test "x$x_includes" != xNONE && test "x$x_libraries" != xNONE; then
+- # Both variables are already set.
+- have_x=yes
+- else
+- if test "${ac_cv_have_x+set}" = set; then
++ case $x_includes,$x_libraries in #(
++ *\'*) { { echo "$as_me:$LINENO: error: Cannot use X directory names containing '" >&5
++echo "$as_me: error: Cannot use X directory names containing '" >&2;}
++ { (exit 1); exit 1; }; };; #(
++ *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ # One or both of the vars are not set, and there is no cached value.
+ ac_x_includes=no ac_x_libraries=no
+-rm -fr conftest.dir
++rm -f -r conftest.dir
+ if mkdir conftest.dir; then
+ cd conftest.dir
+- # Make sure to not put "make" in the Imakefile rules, since we grep it out.
+ cat >Imakefile <<'_ACEOF'
+-acfindx:
+- @echo 'ac_im_incroot="${INCROOT}"; ac_im_usrlibdir="${USRLIBDIR}"; ac_im_libdir="${LIBDIR}"'
++incroot:
++ @echo incroot='${INCROOT}'
++usrlibdir:
++ @echo usrlibdir='${USRLIBDIR}'
++libdir:
++ @echo libdir='${LIBDIR}'
+ _ACEOF
+- if (xmkmf) >/dev/null 2>/dev/null && test -f Makefile; then
++ if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then
+ # GNU make sometimes prints "make[1]: Entering...", which would confuse us.
+- eval `${MAKE-make} acfindx 2>/dev/null | grep -v make`
++ for ac_var in incroot usrlibdir libdir; do
++ eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`"
++ done
+ # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR.
+ for ac_extension in a so sl; do
+- if test ! -f $ac_im_usrlibdir/libX11.$ac_extension &&
+- test -f $ac_im_libdir/libX11.$ac_extension; then
++ if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" &&
++ test -f "$ac_im_libdir/libX11.$ac_extension"; then
+ ac_im_usrlibdir=$ac_im_libdir; break
+ fi
+ done
+@@ -26285,7 +30212,7 @@
+ # bogus both because they are the default anyway, and because
+ # using them would break gcc on systems where it needs fixed includes.
+ case $ac_im_incroot in
+- /usr/include) ;;
++ /usr/include) ac_x_includes= ;;
+ *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;;
+ esac
+ case $ac_im_usrlibdir in
+@@ -26294,7 +30221,7 @@
+ esac
+ fi
+ cd ..
+- rm -fr conftest.dir
++ rm -f -r conftest.dir
+ fi
+
+ # Standard set of common directories for X headers.
+@@ -26335,7 +30262,7 @@
+ /usr/openwin/share/include'
+
+ if test "$ac_x_includes" = no; then
+- # Guess where to find include files, by looking for Intrinsic.h.
++ # Guess where to find include files, by looking for Xlib.h.
+ # First, try using that file with no special directory specified.
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -26343,10 +30270,15 @@
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <X11/Intrinsic.h>
++#include <X11/Xlib.h>
+ _ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+@@ -26370,12 +30302,13 @@
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+ for ac_dir in $ac_x_header_dirs; do
+- if test -r "$ac_dir/X11/Intrinsic.h"; then
++ if test -r "$ac_dir/X11/Xlib.h"; then
+ ac_x_includes=$ac_dir
+ break
+ fi
+ done
+ fi
++
+ rm -f conftest.err conftest.$ac_ext
+ fi # $ac_x_includes = no
+
+@@ -26391,34 +30324,46 @@
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <X11/Intrinsic.h>
++#include <X11/Xlib.h>
+ int
+ main ()
+ {
+-XtMalloc (0)
++XrmInitialize ()
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26434,34 +30379,38 @@
+ do
+ # Don't even attempt the hair of trying to link an X program!
+ for ac_extension in a so sl; do
+- if test -r $ac_dir/libXt.$ac_extension; then
++ if test -r "$ac_dir/libXt.$ac_extension"; then
+ ac_x_libraries=$ac_dir
+ break 2
+ fi
+ done
+ done
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi # $ac_x_libraries = no
+
+-if test "$ac_x_includes" = no || test "$ac_x_libraries" = no; then
+- # Didn't find X anywhere. Cache the known absence of X.
+- ac_cv_have_x="have_x=no"
+-else
++case $ac_x_includes,$ac_x_libraries in #(
++ no,* | *,no | *\'*)
++ # Didn't find X, or a directory has "'" in its name.
++ ac_cv_have_x="have_x=no";; #(
++ *)
+ # Record where we found X for the cache.
+ ac_cv_have_x="have_x=yes \
+- ac_x_includes=$ac_x_includes ac_x_libraries=$ac_x_libraries"
+-fi
+-fi
+-
++ ac_x_includes='$ac_x_includes'\
++ ac_x_libraries='$ac_x_libraries'"
++esac
+ fi
++;; #(
++ *) have_x=yes;;
++ esac
+ eval "$ac_cv_have_x"
+ fi # $with_x != no
+
+ if test "$have_x" != yes; then
+- echo "$as_me:$LINENO: result: $have_x" >&5
+-echo "${ECHO_T}$have_x" >&6
++ { echo "$as_me:$LINENO: result: $have_x" >&5
++echo "${ECHO_T}$have_x" >&6; }
+ no_x=yes
+ else
+ # If each of the values was on the command line, it overrides each guess.
+@@ -26469,9 +30418,10 @@
+ test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries
+ # Update the cache value to reflect the command line values.
+ ac_cv_have_x="have_x=yes \
+- ac_x_includes=$x_includes ac_x_libraries=$x_libraries"
+- echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5
+-echo "${ECHO_T}libraries $x_libraries, headers $x_includes" >&6
++ ac_x_includes='$x_includes'\
++ ac_x_libraries='$x_libraries'"
++ { echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5
++echo "${ECHO_T}libraries $x_libraries, headers $x_includes" >&6; }
+ fi
+
+ if test "$no_x" = yes; then
+@@ -26494,8 +30444,8 @@
+ # others require no space. Words are not sufficient . . . .
+ case `(uname -sr) 2>/dev/null` in
+ "SunOS 5"*)
+- echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5
+-echo $ECHO_N "checking whether -R must be followed by a space... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5
++echo $ECHO_N "checking whether -R must be followed by a space... $ECHO_C" >&6; }
+ ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -26513,24 +30463,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26541,11 +30503,12 @@
+
+ ac_R_nospace=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ if test $ac_R_nospace = yes; then
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ X_LIBS="$X_LIBS -R$x_libraries"
+ else
+ LIBS="$ac_xsave_LIBS -R $x_libraries"
+@@ -26565,24 +30528,36 @@
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26593,15 +30568,16 @@
+
+ ac_R_space=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ if test $ac_R_space = yes; then
+- echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
+ X_LIBS="$X_LIBS -R $x_libraries"
+ else
+- echo "$as_me:$LINENO: result: neither works" >&5
+-echo "${ECHO_T}neither works" >&6
++ { echo "$as_me:$LINENO: result: neither works" >&5
++echo "${ECHO_T}neither works" >&6; }
+ fi
+ fi
+ LIBS=$ac_xsave_LIBS
+@@ -26626,40 +30602,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char XOpenDisplay ();
+ int
+ main ()
+ {
+-XOpenDisplay ();
++return XOpenDisplay ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26668,8 +30656,8 @@
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5
+-echo $ECHO_N "checking for dnet_ntoa in -ldnet... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5
++echo $ECHO_N "checking for dnet_ntoa in -ldnet... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -26682,40 +30670,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char dnet_ntoa ();
+ int
+ main ()
+ {
+-dnet_ntoa ();
++return dnet_ntoa ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26726,19 +30726,20 @@
+
+ ac_cv_lib_dnet_dnet_ntoa=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5
+-echo "${ECHO_T}$ac_cv_lib_dnet_dnet_ntoa" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5
++echo "${ECHO_T}$ac_cv_lib_dnet_dnet_ntoa" >&6; }
+ if test $ac_cv_lib_dnet_dnet_ntoa = yes; then
+ X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet"
+ fi
+
+ if test $ac_cv_lib_dnet_dnet_ntoa = no; then
+- echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5
+-echo $ECHO_N "checking for dnet_ntoa in -ldnet_stub... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5
++echo $ECHO_N "checking for dnet_ntoa in -ldnet_stub... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -26751,40 +30752,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char dnet_ntoa ();
+ int
+ main ()
+ {
+-dnet_ntoa ();
++return dnet_ntoa ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26795,19 +30808,21 @@
+
+ ac_cv_lib_dnet_stub_dnet_ntoa=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5
+-echo "${ECHO_T}$ac_cv_lib_dnet_stub_dnet_ntoa" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5
++echo "${ECHO_T}$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; }
+ if test $ac_cv_lib_dnet_stub_dnet_ntoa = yes; then
+ X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub"
+ fi
+
+ fi
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS="$ac_xsave_LIBS"
+
+@@ -26819,8 +30834,8 @@
+ # on Irix 5.2, according to T.E. Dickey.
+ # The functions gethostbyname, getservbyname, and inet_addr are
+ # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking.
+- echo "$as_me:$LINENO: checking for gethostbyname" >&5
+-echo $ECHO_N "checking for gethostbyname... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for gethostbyname" >&5
++echo $ECHO_N "checking for gethostbyname... $ECHO_C" >&6; }
+ if test "${ac_cv_func_gethostbyname+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -26847,53 +30862,59 @@
+
+ #undef gethostbyname
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char gethostbyname ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
++#if defined __stub_gethostbyname || defined __stub___gethostbyname
+ choke me
+-#else
+-char (*f) () = gethostbyname;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != gethostbyname;
++return gethostbyname ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26904,15 +30925,16 @@
+
+ ac_cv_func_gethostbyname=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5
+-echo "${ECHO_T}$ac_cv_func_gethostbyname" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5
++echo "${ECHO_T}$ac_cv_func_gethostbyname" >&6; }
+
+ if test $ac_cv_func_gethostbyname = no; then
+- echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
+-echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
++echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -26925,40 +30947,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char gethostbyname ();
+ int
+ main ()
+ {
+-gethostbyname ();
++return gethostbyname ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -26969,19 +31003,20 @@
+
+ ac_cv_lib_nsl_gethostbyname=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
+-echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
++echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6; }
+ if test $ac_cv_lib_nsl_gethostbyname = yes; then
+ X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl"
+ fi
+
+ if test $ac_cv_lib_nsl_gethostbyname = no; then
+- echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5
+-echo $ECHO_N "checking for gethostbyname in -lbsd... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5
++echo $ECHO_N "checking for gethostbyname in -lbsd... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -26994,40 +31029,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char gethostbyname ();
+ int
+ main ()
+ {
+-gethostbyname ();
++return gethostbyname ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -27038,12 +31085,13 @@
+
+ ac_cv_lib_bsd_gethostbyname=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5
+-echo "${ECHO_T}$ac_cv_lib_bsd_gethostbyname" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5
++echo "${ECHO_T}$ac_cv_lib_bsd_gethostbyname" >&6; }
+ if test $ac_cv_lib_bsd_gethostbyname = yes; then
+ X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd"
+ fi
+@@ -27058,8 +31106,8 @@
+ # variants that don't use the name server (or something). -lsocket
+ # must be given before -lnsl if both are needed. We assume that
+ # if connect needs -lnsl, so does gethostbyname.
+- echo "$as_me:$LINENO: checking for connect" >&5
+-echo $ECHO_N "checking for connect... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for connect" >&5
++echo $ECHO_N "checking for connect... $ECHO_C" >&6; }
+ if test "${ac_cv_func_connect+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -27086,53 +31134,59 @@
+
+ #undef connect
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char connect ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_connect) || defined (__stub___connect)
++#if defined __stub_connect || defined __stub___connect
+ choke me
+-#else
+-char (*f) () = connect;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != connect;
++return connect ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -27143,15 +31197,16 @@
+
+ ac_cv_func_connect=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5
+-echo "${ECHO_T}$ac_cv_func_connect" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5
++echo "${ECHO_T}$ac_cv_func_connect" >&6; }
+
+ if test $ac_cv_func_connect = no; then
+- echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
+-echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
++echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_socket_connect+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -27164,40 +31219,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char connect ();
+ int
+ main ()
+ {
+-connect ();
++return connect ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -27208,12 +31275,13 @@
+
+ ac_cv_lib_socket_connect=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
+-echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
++echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6; }
+ if test $ac_cv_lib_socket_connect = yes; then
+ X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS"
+ fi
+@@ -27221,8 +31289,8 @@
+ fi
+
+ # Guillermo Gomez says -lposix is necessary on A/UX.
+- echo "$as_me:$LINENO: checking for remove" >&5
+-echo $ECHO_N "checking for remove... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for remove" >&5
++echo $ECHO_N "checking for remove... $ECHO_C" >&6; }
+ if test "${ac_cv_func_remove+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -27249,53 +31317,59 @@
+
+ #undef remove
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char remove ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_remove) || defined (__stub___remove)
++#if defined __stub_remove || defined __stub___remove
+ choke me
+-#else
+-char (*f) () = remove;
+-#endif
+-#ifdef __cplusplus
+-}
+ #endif
+
+ int
+ main ()
+ {
+-return f != remove;
++return remove ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -27306,15 +31380,16 @@
+
+ ac_cv_func_remove=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5
+-echo "${ECHO_T}$ac_cv_func_remove" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5
++echo "${ECHO_T}$ac_cv_func_remove" >&6; }
+
+ if test $ac_cv_func_remove = no; then
+- echo "$as_me:$LINENO: checking for remove in -lposix" >&5
+-echo $ECHO_N "checking for remove in -lposix... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for remove in -lposix" >&5
++echo $ECHO_N "checking for remove in -lposix... $ECHO_C" >&6; }
+ if test "${ac_cv_lib_posix_remove+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -27327,40 +31402,52 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char remove ();
+ int
+ main ()
+ {
+-remove ();
++return remove ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+@@ -27371,12 +31458,13 @@
+
+ ac_cv_lib_posix_remove=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5
+-echo "${ECHO_T}$ac_cv_lib_posix_remove" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5
++echo "${ECHO_T}$ac_cv_lib_posix_remove" >&6; }
+ if test $ac_cv_lib_posix_remove = yes; then
+ X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix"
+ fi
+@@ -27384,8 +31472,8 @@
+ fi
+
+ # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay.
+- echo "$as_me:$LINENO: checking for shmat" >&5
+-echo $ECHO_N "checking for shmat... $ECHO_C" >&6
++ { echo "$as_me:$LINENO: checking for shmat" >&5
++echo $ECHO_N "checking for shmat... $ECHO_C" >&6; }
+ if test "${ac_cv_func_shmat+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+@@ -27412,77 +31500,347 @@
+
+ #undef shmat
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+-{
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+ char shmat ();
+ /* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+-#if defined (__stub_shmat) || defined (__stub___shmat)
++#if defined __stub_shmat || defined __stub___shmat
+ choke me
+-#else
+-char (*f) () = shmat;
+ #endif
++
++int
++main ()
++{
++return shmat ();
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ac_cv_func_shmat=yes
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_cv_func_shmat=no
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5
++echo "${ECHO_T}$ac_cv_func_shmat" >&6; }
++
++ if test $ac_cv_func_shmat = no; then
++ { echo "$as_me:$LINENO: checking for shmat in -lipc" >&5
++echo $ECHO_N "checking for shmat in -lipc... $ECHO_C" >&6; }
++if test "${ac_cv_lib_ipc_shmat+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_check_lib_save_LIBS=$LIBS
++LIBS="-lipc $LIBS"
++cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
++extern "C"
++#endif
++char shmat ();
++int
++main ()
++{
++return shmat ();
++ ;
++ return 0;
+ }
++_ACEOF
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ac_cv_lib_ipc_shmat=yes
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_cv_lib_ipc_shmat=no
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++LIBS=$ac_check_lib_save_LIBS
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5
++echo "${ECHO_T}$ac_cv_lib_ipc_shmat" >&6; }
++if test $ac_cv_lib_ipc_shmat = yes; then
++ X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc"
++fi
++
++ fi
++ fi
++
++ # Check for libraries that X11R6 Xt/Xaw programs need.
++ ac_save_LDFLAGS=$LDFLAGS
++ test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries"
++ # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to
++ # check for ICE first), but we must link in the order -lSM -lICE or
++ # we get undefined symbols. So assume we have SM if we have ICE.
++ # These have to be linked with before -lX11, unlike the other
++ # libraries we check for below, so use a different variable.
++ # John Interrante, Karl Berry
++ { echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5
++echo $ECHO_N "checking for IceConnectionNumber in -lICE... $ECHO_C" >&6; }
++if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_check_lib_save_LIBS=$LIBS
++LIBS="-lICE $X_EXTRA_LIBS $LIBS"
++cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
+ #endif
++char IceConnectionNumber ();
++int
++main ()
++{
++return IceConnectionNumber ();
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ac_cv_lib_ICE_IceConnectionNumber=yes
++else
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_cv_lib_ICE_IceConnectionNumber=no
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++LIBS=$ac_check_lib_save_LIBS
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5
++echo "${ECHO_T}$ac_cv_lib_ICE_IceConnectionNumber" >&6; }
++if test $ac_cv_lib_ICE_IceConnectionNumber = yes; then
++ X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE"
++fi
++
++ LDFLAGS=$ac_save_LDFLAGS
+
++fi
++
++x_libraries=`echo "$x_libraries" | sed -e "s,^$usr_lib\$,,"`
++X_LIBS=`echo "$X_LIBS " | sed -e "$no_usr_lib"`
++{ echo "$as_me:$LINENO: checking for XextCreateExtension in -lXext" >&5
++echo $ECHO_N "checking for XextCreateExtension in -lXext... $ECHO_C" >&6; }
++if test "${ac_cv_lib_Xext_XextCreateExtension+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_check_lib_save_LIBS=$LIBS
++LIBS="-lXext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
++cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char XextCreateExtension ();
+ int
+ main ()
+ {
+-return f != shmat;
++return XextCreateExtension ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_func_shmat=yes
++ ac_cv_lib_Xext_XextCreateExtension=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_func_shmat=no
++ ac_cv_lib_Xext_XextCreateExtension=no
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++LIBS=$ac_check_lib_save_LIBS
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_Xext_XextCreateExtension" >&5
++echo "${ECHO_T}$ac_cv_lib_Xext_XextCreateExtension" >&6; }
++if test $ac_cv_lib_Xext_XextCreateExtension = yes; then
++ Xext="-lXext"
++else
++ Xext=
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5
+-echo "${ECHO_T}$ac_cv_func_shmat" >&6
+
+- if test $ac_cv_func_shmat = no; then
+- echo "$as_me:$LINENO: checking for shmat in -lipc" >&5
+-echo $ECHO_N "checking for shmat in -lipc... $ECHO_C" >&6
+-if test "${ac_cv_lib_ipc_shmat+set}" = set; then
++{ echo "$as_me:$LINENO: checking for XtMainLoop in -lXt" >&5
++echo $ECHO_N "checking for XtMainLoop in -lXt... $ECHO_C" >&6; }
++if test "${ac_cv_lib_Xt_XtMainLoop+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lipc $LIBS"
++LIBS="-lXt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -27490,79 +31848,82 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char shmat ();
++char XtMainLoop ();
+ int
+ main ()
+ {
+-shmat ();
++return XtMainLoop ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_lib_ipc_shmat=yes
++ ac_cv_lib_Xt_XtMainLoop=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_lib_ipc_shmat=no
++ ac_cv_lib_Xt_XtMainLoop=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5
+-echo "${ECHO_T}$ac_cv_lib_ipc_shmat" >&6
+-if test $ac_cv_lib_ipc_shmat = yes; then
+- X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc"
+-fi
+-
+- fi
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_Xt_XtMainLoop" >&5
++echo "${ECHO_T}$ac_cv_lib_Xt_XtMainLoop" >&6; }
++if test $ac_cv_lib_Xt_XtMainLoop = yes; then
++ Xt="-lXt"
++else
++ Xt=
+ fi
+
+- # Check for libraries that X11R6 Xt/Xaw programs need.
+- ac_save_LDFLAGS=$LDFLAGS
+- test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries"
+- # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to
+- # check for ICE first), but we must link in the order -lSM -lICE or
+- # we get undefined symbols. So assume we have SM if we have ICE.
+- # These have to be linked with before -lX11, unlike the other
+- # libraries we check for below, so use a different variable.
+- # John Interrante, Karl Berry
+- echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5
+-echo $ECHO_N "checking for IceConnectionNumber in -lICE... $ECHO_C" >&6
+-if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then
++{ echo "$as_me:$LINENO: checking for XmuMakeAtom in -lXmu" >&5
++echo $ECHO_N "checking for XmuMakeAtom in -lXmu... $ECHO_C" >&6; }
++if test "${ac_cv_lib_Xmu_XmuMakeAtom+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lICE $X_EXTRA_LIBS $LIBS"
++LIBS="-lXmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -27570,73 +31931,172 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char IceConnectionNumber ();
++char XmuMakeAtom ();
+ int
+ main ()
+ {
+-IceConnectionNumber ();
++return XmuMakeAtom ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_lib_ICE_IceConnectionNumber=yes
++ ac_cv_lib_Xmu_XmuMakeAtom=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_lib_ICE_IceConnectionNumber=no
++ ac_cv_lib_Xmu_XmuMakeAtom=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5
+-echo "${ECHO_T}$ac_cv_lib_ICE_IceConnectionNumber" >&6
+-if test $ac_cv_lib_ICE_IceConnectionNumber = yes; then
+- X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE"
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_Xmu_XmuMakeAtom" >&5
++echo "${ECHO_T}$ac_cv_lib_Xmu_XmuMakeAtom" >&6; }
++if test $ac_cv_lib_Xmu_XmuMakeAtom = yes; then
++ Xmu="-lXmu"
++else
++ Xmu=
+ fi
+
+- LDFLAGS=$ac_save_LDFLAGS
++LDFLAGS=$orig_LDFLAGS
++X_ALL_LIBS="$Xmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS"
+
++## OpenGL
++if test "$with_opengl" != "no"; then
++ if test "${with_opengl-yes}" != yes; then
++ OPENGL_PATH=$with_opengl
+ fi
+-
+-x_libraries=`echo "$x_libraries" | sed -e "s,^$usr_lib\$,,"`
+-X_LIBS=`echo "$X_LIBS " | sed -e "$no_usr_lib"`
+-echo "$as_me:$LINENO: checking for XextCreateExtension in -lXext" >&5
+-echo $ECHO_N "checking for XextCreateExtension in -lXext... $ECHO_C" >&6
+-if test "${ac_cv_lib_Xext_XextCreateExtension+set}" = set; then
++ if test -d "$OPENGL_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $OPENGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $OPENGL_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ OPENGL_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$OPENGL_PATH" in
++ /*) ;;
++ * ) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ case "$OSTYPE" in
++ darwin) # Use native interface
++ OPENGL_LIBS="-framework AGL -framework OpenGL"
++ ;;
++ # cygwin) ... ;;
++ *) # Default -- assume X-based
++ LIBS="$orig_LIBS"
++ CPPFLAGS="$orig_CPPFLAGS"
++ LDFLAGS="$orig_LDFLAGS $X_LIBS"
++ if test -d "$OPENGL_PATH/include/GL"; then
++ OPENGL_INCLUDE="-I$OPENGL_PATH/include $X_CFLAGS"
++ else
++ OPENGL_INCLUDE=$X_CFLAGS
++ fi
++ if test -n "$OPENGL_PATH" -a -d "$OPENGL_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $OPENGL_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $OPENGL_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
++ fi
++ elif test -f /usr/lib/mesa/libGL.so; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in /usr/lib/mesa; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in /usr/lib/mesa; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
++ fi
++ else
++ OPENGL_LIBPATH=$X_LIBS
++ fi
++ OPENGL_LIBS="$OPENGL_LIBPATH -lGLU -lGL $X_ALL_LIBS"
++ ;;
++ esac
++ case "${OPENGL_PATH}" in
++ */*) where=" in $OPENGL_PATH" ;;
++ * ) where= ;;
++ esac
++ { echo "$as_me:$LINENO: checking for OpenGL$where" >&5
++echo $ECHO_N "checking for OpenGL$where... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_opengl+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lXext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
++ CPPFLAGS="$orig_CPPFLAGS $OPENGL_INCLUDE"
++ LIBS="$OPENGL_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -27644,69 +32104,136 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
++ #ifdef NCBI_OS_DARWIN
++ # include <OpenGL/gl.h>
++ #else
++ # include <GL/gl.h>
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char XextCreateExtension ();
++
+ int
+ main ()
+ {
+-XextCreateExtension ();
++glBegin(0);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_lib_Xext_XextCreateExtension=yes
++ ncbi_cv_lib_opengl=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_lib_Xext_XextCreateExtension=no
++ ncbi_cv_lib_opengl=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+-LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_Xext_XextCreateExtension" >&5
+-echo "${ECHO_T}$ac_cv_lib_Xext_XextCreateExtension" >&6
+-if test $ac_cv_lib_Xext_XextCreateExtension = yes; then
+- Xext="-lXext"
+-else
+- Xext=
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_opengl" >&5
++echo "${ECHO_T}$ncbi_cv_lib_opengl" >&6; }
+ fi
+
+-echo "$as_me:$LINENO: checking for XtMainLoop in -lXt" >&5
+-echo $ECHO_N "checking for XtMainLoop in -lXt... $ECHO_C" >&6
+-if test "${ac_cv_lib_Xt_XtMainLoop+set}" = set; then
++if test "$with_opengl" = "no" -o "$ncbi_cv_lib_opengl" = "no"; then
++ OPENGL_INCLUDE=
++ OPENGL_LIBS=
++ OPENGL_STATIC_LIBS=
++ OSMESA_INCLUDE=
++ OSMESA_LIBS=
++ OSMESA_STATIC_LIBS=
++ GLUT_INCLUDE=
++ GLUT_LIBS=
++ GLEW_INCLUDE=
++ GLEW_LIBS=
++ GLEW_STATIC_LIBS=
++ if test "${with_opengl:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-opengl explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-opengl explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++else
++ WithPackages="$WithPackages${WithPackagesSep}OpenGL"; WithPackagesSep=" "
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_OPENGL 1
++_ACEOF
++
++ if test -f "$OPENGL_PATH/lib${bit64_sfx}/libGLU-static.a"; then
++ OPENGL_STATIC_LIBS="$OPENGL_LIBPATH -lGLU-static -lGL-static $X_ALL_LIBS"
++ else
++ OPENGL_STATIC_LIBS=$OPENGL_LIBS
++ fi
++ : ${OSMESA_PATH=$OPENGL_PATH}
++ if test "$with_mesa" != "no"; then
++ if test "${with_mesa-yes}" != "yes"; then
++ OSMESA_PATH=$with_mesa
++ fi
++ if test -d "$OSMESA_PATH"; then
++ OSMESA_INCLUDE=-I$OSMESA_PATH/include
++ if test "$OSMESA_PATH" != "$OPENGL_PATH"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $OSMESA_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ OSMESA_LDFLAGS="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $OSMESA_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ OSMESA_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ fi
++ LDFLAGS="$orig_LDFLAGS $OSMESA_LDFLAGS $OPENGL_LIBPATH"
++ { echo "$as_me:$LINENO: checking for OSMesaCreateContext in -lOSMesa" >&5
++echo $ECHO_N "checking for OSMesaCreateContext in -lOSMesa... $ECHO_C" >&6; }
++if test "${ac_cv_lib_OSMesa_OSMesaCreateContext+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lXt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
++LIBS="-lOSMesa $OPENGL_LIBS $LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -27714,69 +32241,128 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char XtMainLoop ();
++char OSMesaCreateContext ();
+ int
+ main ()
+ {
+-XtMainLoop ();
++return OSMesaCreateContext ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_lib_Xt_XtMainLoop=yes
++ ac_cv_lib_OSMesa_OSMesaCreateContext=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_lib_Xt_XtMainLoop=no
++ ac_cv_lib_OSMesa_OSMesaCreateContext=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_Xt_XtMainLoop" >&5
+-echo "${ECHO_T}$ac_cv_lib_Xt_XtMainLoop" >&6
+-if test $ac_cv_lib_Xt_XtMainLoop = yes; then
+- Xt="-lXt"
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_OSMesa_OSMesaCreateContext" >&5
++echo "${ECHO_T}$ac_cv_lib_OSMesa_OSMesaCreateContext" >&6; }
++if test $ac_cv_lib_OSMesa_OSMesaCreateContext = yes; then
++ WithPackages="$WithPackages${WithPackagesSep}MESA"; WithPackagesSep=" ";
++ OSMESA_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa -lGLU -lGL $X_ALL_LIBS"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBOSMESA 1
++_ACEOF
++
+ else
+- Xt=
++ OSMESA_LIBS=
+ fi
+
+-echo "$as_me:$LINENO: checking for XmuMakeAtom in -lXmu" >&5
+-echo $ECHO_N "checking for XmuMakeAtom in -lXmu... $ECHO_C" >&6
+-if test "${ac_cv_lib_Xmu_XmuMakeAtom+set}" = set; then
++ fi
++ if test -z "$OSMESA_LIBS"; then
++ if test "${with_mesa:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-mesa explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-mesa explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ elif test -f "$OSMESA_PATH/lib${bit64_sfx}/libOSMesa-static.a"; then
++ OSMESA_STATIC_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa-static -lGLU-static -lGL-static $X_ALL_LIBS"
++ else
++ OSMESA_STATIC_LIBS=$OSMESA_LIBS
++ fi
++ if test "$with_glut" != "no"; then
++ if test "${with_glut-yes}" != "yes"; then
++ GLUT_PATH=$with_glut
++ fi
++ if test -d "GLUT_PATH"; then
++ GLUT_INCLUDE=-I$GLUT_PATH/include
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $GLUT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ GLUT_LDFLAGS="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $GLUT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ GLUT_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ LDFLAGS="$orig_LDFLAGS $GLUT_LDFLAGS $OPENGL_LIBPATH"
++ { echo "$as_me:$LINENO: checking for glutInit in -lglut" >&5
++echo $ECHO_N "checking for glutInit in -lglut... $ECHO_C" >&6; }
++if test "${ac_cv_lib_glut_glutInit+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lXmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
++LIBS="-lglut $OPENGL_LIBS $LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -27784,163 +32370,163 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+-/* Override any gcc2 internal prototype to avoid an error. */
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
+ #ifdef __cplusplus
+ extern "C"
+ #endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char XmuMakeAtom ();
++char glutInit ();
+ int
+ main ()
+ {
+-XmuMakeAtom ();
++return glutInit ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_lib_Xmu_XmuMakeAtom=yes
++ ac_cv_lib_glut_glutInit=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_lib_Xmu_XmuMakeAtom=no
++ ac_cv_lib_glut_glutInit=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_Xmu_XmuMakeAtom" >&5
+-echo "${ECHO_T}$ac_cv_lib_Xmu_XmuMakeAtom" >&6
+-if test $ac_cv_lib_Xmu_XmuMakeAtom = yes; then
+- Xmu="-lXmu"
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_glut_glutInit" >&5
++echo "${ECHO_T}$ac_cv_lib_glut_glutInit" >&6; }
++if test $ac_cv_lib_glut_glutInit = yes; then
++ WithPackages="$WithPackages${WithPackagesSep}GLUT"; WithPackagesSep=" ";
++ GLUT_LIBS="$GLUT_LDFLAGS $OPENGL_LIBPATH -lglut -lGLU -lGL $X_ALL_LIBS"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBGLUT 1
++_ACEOF
++
+ else
+- Xmu=
++ GLUT_LIBS=
+ fi
+
+-LDFLAGS=$orig_LDFLAGS
+-X_ALL_LIBS="$Xmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS"
+-
+-## OpenGL
+-if test "$with_opengl" != "no"; then
+- if test "${with_opengl-yes}" = yes; then
+- if test -d $NCBI/MesaGL; then
+- : ${OPENGL_PATH=$NCBI/MesaGL}
++ if test -z "$GLUT_LIBS"; then
++ if test "${with_glut:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-glut explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-glut explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+- else
+- OPENGL_PATH=$with_opengl
+ fi
+- if test -d "$OPENGL_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $OPENGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ fi
++ if test "$with_glew" != "no"; then
++ if test "${with_glew-yes}" != "yes"; then
++ GLEW_PATH=$with_glew
++ fi
++ if test -d "$GLEW_PATH"; then
++ if test -d "$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx"; then
++ GLEW_PATH=$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx
++ elif test -d "$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx"; then
++ GLEW_PATH=$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx
++ elif test -d "$GLEW_PATH/$DEBUG_SFX$bit64_sfx"; then
++ GLEW_PATH=$GLEW_PATH/$DEBUG_SFX$bit64_sfx
++ fi
++ ncbi_fix_dir_tmp=`if cd $GLEW_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+ case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $OPENGL_PATH && $smart_pwd 2>/dev/null`
++ /.*) ncbi_fix_dir_tmp2=`cd $GLEW_PATH && $smart_pwd 2>/dev/null`
+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- OPENGL_PATH=$ncbi_fix_dir_tmp2
++ GLEW_PATH=$ncbi_fix_dir_tmp2
+ else
+- case "$OPENGL_PATH" in
++ case "$GLEW_PATH" in
+ /*) ;;
+- * ) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
++ * ) GLEW_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+ ;;
+- /*) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
++ /*) GLEW_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+- fi
+- case "$OSTYPE" in
+- darwin) # Use native interface
+- OPENGL_LIBS="-framework AGL -framework OpenGL"
+- ;;
+- # cygwin) ... ;;
+- *) # Default -- assume X-based
+- LIBS="$orig_LIBS"
+- CPPFLAGS="$orig_CPPFLAGS"
+- LDFLAGS="$orig_LDFLAGS $X_LIBS"
+- if test -d "$OPENGL_PATH/include/GL"; then
+- OPENGL_INCLUDE="-I$OPENGL_PATH/include $X_CFLAGS"
++ GLEW_LIBDIR=$GLEW_PATH/lib
++ if test -n "$bit64_sfx" -a -d $GLEW_LIBDIR$bit64_sfx; then
++ if test -d $GLEW_LIBDIR; then
++ for x in $GLEW_LIBDIR/libGLEW*; do
++ if cmp -s "$x" "$GLEW_LIBDIR$bit64_sfx/`basename \"$x\"`"; then
++ :
+ else
+- OPENGL_INCLUDE=$X_CFLAGS
++ GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
++ break
+ fi
+- if test -n "$OPENGL_PATH" -a -d "$OPENGL_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $OPENGL_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $OPENGL_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
++ GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
+ fi
+- elif test -f /usr/lib/mesa/libGL.so; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in /usr/lib/mesa; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
++ fi
++ glew_config="eval PKG_CONFIG_PATH=\"$GLEW_LIBDIR/pkgconfig\" pkg-config"
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in /usr/lib/mesa; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
++ glew_config=pkg-config
+ fi
++ if pkg-config --version >/dev/null 2>&1; then
++ if $glew_config glewmx --exists >/dev/null 2>&1 \
++ && test -n "`$glew_config glewmx --libs 2>/dev/null`"; then
++ glew_config="$glew_config glewmx"
++ elif $glew_config glew --exists >/dev/null 2>&1 \
++ && test -n "`$glew_config glew --libs 2>/dev/null`"; then
++ glew_config="$glew_config glew"
+ else
+- OPENGL_LIBPATH=$X_LIBS
++ glew_config=
+ fi
+- OPENGL_LIBS="$OPENGL_LIBPATH -lGLU -lGL $X_ALL_LIBS"
+- ;;
+- esac
+- case "${OPENGL_PATH}" in
+- */*) where=" in $OPENGL_PATH" ;;
+- * ) where= ;;
+- esac
+- echo "$as_me:$LINENO: checking for OpenGL$where" >&5
+-echo $ECHO_N "checking for OpenGL$where... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_opengl+set}" = set; then
++ if test -n "$glew_config"; then
++ GLEW_INCLUDE=`$glew_config --cflags | sed 's:/GL *$::'`
++ GLEW_LDFLAGS=`$glew_config --libs-only-L`
++ glew_libname=`$glew_config --libs-only-l | sed -e 's/-l//'`
++ fi
++ fi
++ if test -z "$glew_libname" -a -d "$GLEW_PATH"; then
++ GLEW_INCLUDE=-I$GLEW_PATH/include
++ GLEW_LDFLAGS=-L$GLEW_LIBDIR
++ fi
++ LDFLAGS="$orig_LDFLAGS $GLEW_LDFLAGS"
++ LIBS="$OPENGL_LIBS $DL_LIBS $orig_LIBS"
++ saved_LIBS=$LIBS
++ { echo "$as_me:$LINENO: checking for library containing glewGetExtension" >&5
++echo $ECHO_N "checking for library containing glewGetExtension... $ECHO_C" >&6; }
++if test "${ac_cv_search_glewGetExtension+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$orig_CPPFLAGS $OPENGL_INCLUDE"
+- LIBS="$OPENGL_LIBS $orig_LIBS"
++ ac_func_search_save_LIBS=$LIBS
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -27948,567 +32534,656 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+
+- #ifdef NCBI_OS_DARWIN
+- # include <OpenGL/gl.h>
+- #else
+- # include <GL/gl.h>
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
+ #endif
+-
++char glewGetExtension ();
+ int
+ main ()
+ {
+-glBegin(0);
++return glewGetExtension ();
+ ;
+ return 0;
+ }
+ _ACEOF
++for ac_lib in '' "$GLEW_LIBS" $glew_libname GLEWmx GLEW; do
++ if test -z "$ac_lib"; then
++ ac_res="none required"
++ else
++ ac_res=-l$ac_lib
++ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ fi
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_opengl=yes
++ ac_cv_search_glewGetExtension=$ac_res
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_opengl=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_opengl" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_opengl" >&6
+-fi
+-
+-if test "$with_opengl" = "no" -o "$ncbi_cv_lib_opengl" = "no"; then
+- OPENGL_INCLUDE=
+- OPENGL_LIBS=
+- OPENGL_STATIC_LIBS=
+- OSMESA_INCLUDE=
+- OSMESA_LIBS=
+- OSMESA_STATIC_LIBS=
+- GLUT_INCLUDE=
+- GLUT_LIBS=
+- GLEW_INCLUDE=
+- GLEW_LIBS=
+- GLEW_STATIC_LIBS=
+- if test "${with_opengl:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-opengl explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-opengl explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++
++
++fi
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext
++ if test "${ac_cv_search_glewGetExtension+set}" = set; then
++ break
+ fi
++done
++if test "${ac_cv_search_glewGetExtension+set}" = set; then
++ :
+ else
+- WithPackages="$WithPackages${WithPackagesSep}OpenGL"; WithPackagesSep=" "
++ ac_cv_search_glewGetExtension=no
++fi
++rm conftest.$ac_ext
++LIBS=$ac_func_search_save_LIBS
++fi
++{ echo "$as_me:$LINENO: result: $ac_cv_search_glewGetExtension" >&5
++echo "${ECHO_T}$ac_cv_search_glewGetExtension" >&6; }
++ac_res=$ac_cv_search_glewGetExtension
++if test "$ac_res" != no; then
++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_OPENGL 1
++#define HAVE_LIBGLEW 1
+ _ACEOF
+
+- if test -f "$OPENGL_PATH/lib${bit64_sfx}/libGLU-static.a"; then
+- OPENGL_STATIC_LIBS="$OPENGL_LIBPATH -lGLU-static -lGL-static $X_ALL_LIBS"
+- else
+- OPENGL_STATIC_LIBS=$OPENGL_LIBS
++ test "x$ac_cv_search_glewGetExtension" = "xnone required" || GLEW_LIBS=$ac_cv_search_glewGetExtension
+ fi
+- : ${OSMESA_PATH=$OPENGL_PATH}
+- if test "$with_mesa" != "no"; then
+- if test "${with_mesa-yes}" != "yes"; then
+- OSMESA_PATH=$with_mesa
++
++ LIBS=$saved_LIBS
++
++ if test "$ac_cv_search_glewGetExtension" = no; then
++ GLEW_INCLUDE=
++ GLEW_LIBS=
++ if test "${with_glew:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-glew explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-glew explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+- if test -d "$OSMESA_PATH"; then
+- OSMESA_INCLUDE=-I$OSMESA_PATH/include
+- if test "$OSMESA_PATH" != "$OPENGL_PATH"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
++ if test "${with_glew_mx:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ else
++ if test -z "${tmp_LIBS+set}"; then
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $OSMESA_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- OSMESA_LDFLAGS="${ncbi_rp_L_flags}"
++ tmp_LIBS=`echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`
+ else
++ tmp_LIBS=
++ ncbi_rp_L_sep=
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $OSMESA_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ for x in `echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`; do
++ case "$x" in
++ -L*)
++ tmp_LIBS="$tmp_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
++ ;;
++ *)
++ tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
+ done
+- OSMESA_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
++ tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}"
+ fi
+ fi
+- LDFLAGS="$orig_LDFLAGS $OSMESA_LDFLAGS $OPENGL_LIBPATH"
+- echo "$as_me:$LINENO: checking for OSMesaCreateContext in -lOSMesa" >&5
+-echo $ECHO_N "checking for OSMesaCreateContext in -lOSMesa... $ECHO_C" >&6
+-if test "${ac_cv_lib_OSMesa_OSMesaCreateContext+set}" = set; then
++ GLEW_LIBS=$tmp_LIBS
++ WithPackages="$WithPackages${WithPackagesSep}GLEW"; WithPackagesSep=" "
++ CPPFLAGS="$orig_CPPFLAGS $GLEW_INCLUDE $OPENGL_INCLUDE"
++ LIBS="$GLEW_LIBS $OPENGL_LIBS $DL_LIBS $orig_LIBS"
++ { echo "$as_me:$LINENO: checking for GLEW multi-context (MX) support (recommended)" >&5
++echo $ECHO_N "checking for GLEW multi-context (MX) support (recommended)... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_glew_mx+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lOSMesa $OPENGL_LIBS $LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char OSMesaCreateContext ();
++#define GLEW_MX 1
++ #include <GL/glew.h>
+ int
+ main ()
+ {
+-OSMesaCreateContext ();
++glewContextInit(NULL);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_lib_OSMesa_OSMesaCreateContext=yes
++ ncbi_cv_lib_glew_mx=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_lib_OSMesa_OSMesaCreateContext=no
++ ncbi_cv_lib_glew_mx=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+-LIBS=$ac_check_lib_save_LIBS
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_OSMesa_OSMesaCreateContext" >&5
+-echo "${ECHO_T}$ac_cv_lib_OSMesa_OSMesaCreateContext" >&6
+-if test $ac_cv_lib_OSMesa_OSMesaCreateContext = yes; then
+- WithPackages="$WithPackages${WithPackagesSep}MESA"; WithPackagesSep=" ";
+- OSMESA_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa -lGLU -lGL $X_ALL_LIBS"
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_glew_mx" >&5
++echo "${ECHO_T}$ncbi_cv_lib_glew_mx" >&6; }
++ if test $ncbi_cv_lib_glew_mx = yes; then
++ GLEW_INCLUDE="$GLEW_INCLUDE -DGLEW_MX"
++ else
++ if test "${with_glew_mx:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ fi
++ : ${GLEW_STATIC_LIBS=$GLEW_LIBDIR/libGLEW-static.a}
++ test -f "$GLEW_STATIC_LIBS" || GLEW_STATIC_LIBS=$GLEW_LIBS
++ fi
++ fi
++fi
+
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBOSMESA 1
+-_ACEOF
++LDFLAGS=$orig_LDFLAGS
++
++
++## wxWidgets
++# Insist on single-byte builds by default, per various projects' expectations.
++: ${with_wxwidgets_ucs=no}
++if test "$with_wxwidgets" != "no" ; then
++ case "$with_wxwidgets" in
++ yes | "" ) ;;
++ * ) WXWIDGETS_PATH=$with_wxwidgets ;;
++ esac
++ if test -d "$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ -a -z "$WXWIDGETS_ARCH_PATH"; then
++ WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
++ elif test -d "$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ -a -z "$WXWIDGETS_ARCH_PATH"; then
++ WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
++ else
++ WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH"
++ fi
++ WXWIDGETS_BINPATH=${WXWIDGETS_BINPATH:="$WXWIDGETS_ARCH_PATH/bin"}
++ WXWIDGETS_LIBPATH=${WXWIDGETS_LIBPATH:="$WXWIDGETS_ARCH_PATH/lib"}
++ WXWIDGETS_INCLUDE=
++ $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
++ # Extract the first word of "wx-config", so it can be a program name with args.
++set dummy wx-config; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_wxconf+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ case $wxconf in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_wxconf="$wxconf" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_dummy="$WXWIDGETS_BINPATH:$PATH"
++for as_dir in $as_dummy
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_wxconf="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++done
++IFS=$as_save_IFS
+
++ ;;
++esac
++fi
++wxconf=$ac_cv_path_wxconf
++if test -n "$wxconf"; then
++ { echo "$as_me:$LINENO: result: $wxconf" >&5
++echo "${ECHO_T}$wxconf" >&6; }
+ else
+- OSMESA_LIBS=
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+
++
++ if test -x "$wxconf"; then
++ WXWIDGETS_ARCH_PATH=`$wxconf --exec-prefix`
++ if test -n "$with_wxwidgets_ucs"; then
++ wxcfflags=--unicode=$with_wxwidgets_ucs
++ else
++ wxcfflags=
+ fi
+- if test -z "$OSMESA_LIBS"; then
+- if test "${with_mesa:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-mesa explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-mesa explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++ for x in `"$wxconf" $wxcfflags --libs --static 2>&5`; do
++ case "$x" in
++ -L*)
++ d=`echo $x | sed -e 's/^-L//'`
++ pcd=$d/pkgconfig
++ if test -d "$pcd"; then
++ PKG_CONFIG_PATH="${PKG_CONFIG_PATH+$PKG_CONFIG_PATH:}$pcd"
+ fi
+- elif test -f "$OSMESA_PATH/lib${bit64_sfx}/libOSMesa-static.a"; then
+- OSMESA_STATIC_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa-static -lGLU-static -lGL-static $X_ALL_LIBS"
++ ;;
++ esac
++ done
++ export PKG_CONFIG_PATH
+ else
+- OSMESA_STATIC_LIBS=$OSMESA_LIBS
++ $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
+ fi
+- : ${GLUT_PATH=$NCBI/glut}
+- if test "$with_glut" != "no"; then
+- if test "${with_glut-yes}" != "yes"; then
+- GLUT_PATH=$with_glut
++ if test -x "$wxconf" \
++ && "$wxconf" $wxcfflags --list 2>/dev/null \
++ | grep 'Default config is gtk2' >/dev/null; then
++ gtkconf="pkg-config gtk+-2.0"
++ elif test -x "$WXWIDGETS_BINPATH/gtk-config"; then
++ gtkconf=$WXWIDGETS_BINPATH/gtk-config
++ elif gtk-config --version >/dev/null 2>&1; then
++ gtkconf=gtk-config
++ else
++ # May work without gtk-config (e.g., on Mac OS X)
++ gtkconf=:
+ fi
+- if test -d "GLUT_PATH"; then
+- GLUT_INCLUDE=-I$GLUT_PATH/include
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
++ case "$host_os" in
++ darwin* )
++ baseflags=""
++ basesed='s/-isysroot [^ ]*//g; s/-arch [^ ]*//g'
++ if test -n "$SYSROOT"; then
++ deps=`"$wxconf" $wxcfflags --libs --static 2>/dev/null \
++ | sed -e 's/.*\.a//'`
++ libsed="$basesed; s/\$/ $deps/"
++ else
++ libsed=$basesed
++ fi
++ ;;
++ * )
++ baseflags=`$gtkconf --cflags 2>/dev/null`
++ basesed=$no_usr_lib
++ libsed=$basesed
++ ;;
++ esac
++ { echo "$as_me:$LINENO: checking for wxWidgets${WXWIDGETS_ARCH_PATH:+ in $WXWIDGETS_ARCH_PATH}" >&5
++echo $ECHO_N "checking for wxWidgets${WXWIDGETS_ARCH_PATH:+ in $WXWIDGETS_ARCH_PATH}... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_wxwidgets+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ if test -x "$wxconf" ; then
++ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $GLUT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- GLUT_LDFLAGS="${ncbi_rp_L_flags}"
++ WXWIDGETS_LIBS=`"$wxconf" $wxcfflags --libs | sed -e "$libsed; s/ -lm / /g;"`
+ else
++ WXWIDGETS_LIBS=
++ ncbi_rp_L_sep=
+ ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $GLUT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `"$wxconf" $wxcfflags --libs | sed -e "$libsed; s/ -lm / /g;"`; do
++ case "$x" in
++ -L*)
++ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
++ ;;
++ *)
++ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
+ done
+- GLUT_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
++ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
+ fi
+- LDFLAGS="$orig_LDFLAGS $GLUT_LDFLAGS $OPENGL_LIBPATH"
+- echo "$as_me:$LINENO: checking for glutInit in -lglut" >&5
+-echo $ECHO_N "checking for glutInit in -lglut... $ECHO_C" >&6
+-if test "${ac_cv_lib_glut_glutInit+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lglut $OPENGL_LIBS $LIBS"
++
++ CPPFLAGS="$WXWIDGETS_INCLUDE $orig_CPPFLAGS"
++ LIBS="$WXWIDGETS_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char glutInit ();
++#include <wx/wx.h>
+ int
+ main ()
+ {
+-glutInit ();
++ wxExit();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_lib_glut_glutInit=yes
++ ncbi_cv_lib_wxwidgets=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ac_cv_lib_glut_glutInit=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-LIBS=$ac_check_lib_save_LIBS
++ ncbi_cv_lib_wxwidgets=no
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_lib_glut_glutInit" >&5
+-echo "${ECHO_T}$ac_cv_lib_glut_glutInit" >&6
+-if test $ac_cv_lib_glut_glutInit = yes; then
+- WithPackages="$WithPackages${WithPackagesSep}GLUT"; WithPackagesSep=" ";
+- GLUT_LIBS="$GLUT_LDFLAGS $OPENGL_LIBPATH -lglut -lGLU -lGL $X_ALL_LIBS"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBGLUT 1
+-_ACEOF
+
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
+ else
+- GLUT_LIBS=
+-fi
+-
+- if test -z "$GLUT_LIBS"; then
+- if test "${with_glut:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-glut explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-glut explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++ ncbi_cv_lib_wxwidgets=no
+ fi
+ fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_wxwidgets" >&5
++echo "${ECHO_T}$ncbi_cv_lib_wxwidgets" >&6; }
++ if test "$ncbi_cv_lib_wxwidgets" = "no"; then
++ if test "${with_wxwidgets:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-wxwidgets explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-wxwidgets explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+- : ${GLEW_PATH=$NCBI/glew}
+- if test "$with_glew" != "no"; then
+- if test "${with_glew-yes}" != "yes"; then
+- GLEW_PATH=$with_glew
+ fi
+- if test -d "$GLEW_PATH"; then
+- if test -d "$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx"; then
+- GLEW_PATH=$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx
+- elif test -d "$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx"; then
+- GLEW_PATH=$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx
+- elif test -d "$GLEW_PATH/$DEBUG_SFX$bit64_sfx"; then
+- GLEW_PATH=$GLEW_PATH/$DEBUG_SFX$bit64_sfx
+ fi
+- ncbi_fix_dir_tmp=`if cd $GLEW_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $GLEW_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- GLEW_PATH=$ncbi_fix_dir_tmp2
++
++if test "$with_wxwidgets" = "no" ; then
++ WXWIDGETS_LIBPATH="No_wxWidgets"
++ WXWIDGETS_INCLUDE=
++ WXWIDGETS_LIBS=
++ WXWIDGETS_STATIC_LIBS=
++ WXWIDGETS_GL_LIBS=
++ WXWIDGETS_GL_STATIC_LIBS=
++ WXWIDGETS_POST_LINK=:
+ else
+- case "$GLEW_PATH" in
+- /*) ;;
+- * ) GLEW_PATH=$ncbi_fix_dir_tmp ;;
++ WithPackages="$WithPackages${WithPackagesSep}wxWidgets"; WithPackagesSep=" "
++ case "`"$wxconf" $wxcfflags --version`" in
++ 1.* | 2.[0-7].*)
++ wxlibs=std
++ ;;
++ *)
++ WithPackages="$WithPackages${WithPackagesSep}wx2.8"; WithPackagesSep=" "
++ wxlibs=std,richtext,aui,propgrid
++ ;;
+ esac
++ # The "yes" may have been cached; get the actual settings again if needed
++ if test -z "$WXWIDGETS_INCLUDE"; then
++ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
+ fi
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ WXWIDGETS_LIBS=`$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; s/ -lm / /g;"`
++ else
++ WXWIDGETS_LIBS=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; s/ -lm / /g;"`; do
++ case "$x" in
++ -L*)
++ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
+ ;;
+- /*) GLEW_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+- GLEW_LIBDIR=$GLEW_PATH/lib
+- if test -n "$bit64_sfx" -a -d $GLEW_LIBDIR$bit64_sfx; then
+- if test -d $GLEW_LIBDIR; then
+- for x in $GLEW_LIBDIR/libGLEW*; do
+- if cmp -s "$x" "$GLEW_LIBDIR$bit64_sfx/`basename \"$x\"`"; then
+- :
+- else
+- GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
+- break
+- fi
++ ncbi_rp_L_sep=" "
+ done
+- else
+- GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
+- fi
+- fi
+- glew_config="eval PKG_CONFIG_PATH=\"$GLEW_LIBDIR/pkgconfig\" pkg-config"
+- else
+- glew_config=pkg-config
++ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
+ fi
+- if pkg-config --version >/dev/null 2>&1; then
+- if $glew_config glewmx --exists >/dev/null 2>&1 \
+- && test -n "`$glew_config glewmx --libs 2>/dev/null`"; then
+- glew_config="$glew_config glewmx"
+- elif $glew_config glew --exists >/dev/null 2>&1 \
+- && test -n "`$glew_config glew --libs 2>/dev/null`"; then
+- glew_config="$glew_config glew"
++ WXWIDGETS_STATIC_LIBS=`"$wxconf" $wxcfflags --libs --static $wxlibs \
++ 2>/dev/null | sed -e "$basesed; s/ -lm / /g;"`
++ if test -n "$WXWIDGETS_STATIC_LIBS"; then
++ # Allow direct use of underlying libraries with strict linkers
++ WXWIDGETS_LIBS="$WXWIDGETS_LIBS `echo $WXWIDGETS_STATIC_LIBS | sed -e 's/.*\.a *//'`"
+ else
+- glew_config=
++ WXWIDGETS_STATIC_LIBS=$WXWIDGETS_LIBS
+ fi
+- if test -n "$glew_config"; then
+- GLEW_INCLUDE=`$glew_config --cflags | sed 's:/GL *$::'`
+- GLEW_LDFLAGS=`$glew_config --libs-only-L`
+- glew_libname=`$glew_config --libs-only-l | sed -e 's/-l//'`
++ WXWIDGETS_GL_LIBS=`"$wxconf" $wxcfflags --libs gl | sed -e "$basesed"`
++ WXWIDGETS_GL_STATIC_LIBS=`"$wxconf" $wxcfflags --libs gl --static \
++ 2>/dev/null | sed -e "$basesed; s|-lGLU* -lGLU*|$OPENGL_STATIC_LIBS|"`
++ : ${WXWIDGETS_GL_STATIC_LIBS:=$WXWIDGETS_GL_LIBS}
++ WXWIDGETS_POST_LINK=`"$wxconf" $wxcfflags --rezflags 2>/dev/null`
++ test -n "$WXWIDGETS_POST_LINK" || WXWIDGETS_POST_LINK=:
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_WXWIDGETS 1
++_ACEOF
++
+ fi
++
++
++## In-house Fast-CGI library
++if test "$with_fastcgi" != "no" ; then
++ case "$with_fastcgi" in
++ yes | "" ) ;;
++ */* ) FASTCGI_PATH=$with_fastcgi ;;
++ * ) FASTCGI_PATH=$NCBI/fcgi-${with_fastcgi} ;;
++ esac
++ if test -d "$FASTCGI_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $FASTCGI_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $FASTCGI_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ FASTCGI_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$FASTCGI_PATH" in
++ /*) ;;
++ * ) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+- if test -z "$glew_libname" -a -d "$GLEW_PATH"; then
+- GLEW_INCLUDE=-I$GLEW_PATH/include
+- GLEW_LDFLAGS=-L$GLEW_LIBDIR
++ ;;
++ /*) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+- LDFLAGS="$orig_LDFLAGS $GLEW_LDFLAGS"
+- LIBS="$OPENGL_LIBS $DL_LIBS $orig_LIBS"
+- saved_LIBS=$LIBS
+- echo "$as_me:$LINENO: checking for library containing glewGetExtension" >&5
+-echo $ECHO_N "checking for library containing glewGetExtension... $ECHO_C" >&6
+-if test "${ac_cv_search_glewGetExtension+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
++ FASTCGI_INCLUDE="-I$FASTCGI_PATH/include${bit64_sfx}"
++ if test "$with_debug" = "no" ; then
++ FASTCGI_LIBDIR="$FASTCGI_PATH/lib${bit64_sfx}"
+ else
+- ac_func_search_save_LIBS=$LIBS
+-ac_cv_search_glewGetExtension=no
+-cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char glewGetExtension ();
+-int
+-main ()
+-{
+-glewGetExtension ();
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ac_cv_search_glewGetExtension="none required"
++ FASTCGI_LIBDIR="$FASTCGI_PATH/altlib${bit64_sfx}"
++ fi
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $FASTCGI_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ FASTCGI_LIBS="${ncbi_rp_L_flags} -lfcgi $NETWORK_LIBS"
+ else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $FASTCGI_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ FASTCGI_LIBS="${ncbi_rp_L_flags}${ncbi_rp_R_flags} -lfcgi $NETWORK_LIBS"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-if test "$ac_cv_search_glewGetExtension" = no; then
+- for ac_lib in "$GLEW_LIBS" $glew_libname GLEWmx GLEW; do
+- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
++ FASTCGI_OBJS="fcgibuf"
++ LIBS="$FASTCGI_LIBS $orig_LIBS"
++ { echo "$as_me:$LINENO: checking for FastCGI libraries${FASTCGI_PATH:+ in $FASTCGI_PATH}" >&5
++echo $ECHO_N "checking for FastCGI libraries${FASTCGI_PATH:+ in $FASTCGI_PATH}... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_fcgi+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ CPPFLAGS="$FASTCGI_INCLUDE $orig_CPPFLAGS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char glewGetExtension ();
++#include <fcgiapp.h>
+ int
+ main ()
+ {
+-glewGetExtension ();
++ (void) FCGX_IsCGI();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ac_cv_search_glewGetExtension="-l$ac_lib"
+-break
++ ncbi_cv_lib_fcgi=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
++ ncbi_cv_lib_fcgi=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+- done
+-fi
+-LIBS=$ac_func_search_save_LIBS
+-fi
+-echo "$as_me:$LINENO: result: $ac_cv_search_glewGetExtension" >&5
+-echo "${ECHO_T}$ac_cv_search_glewGetExtension" >&6
+-if test "$ac_cv_search_glewGetExtension" != no; then
+- test "$ac_cv_search_glewGetExtension" = "none required" || LIBS="$ac_cv_search_glewGetExtension $LIBS"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBGLEW 1
+-_ACEOF
+-
+- test "x$ac_cv_search_glewGetExtension" = "xnone required" || GLEW_LIBS=$ac_cv_search_glewGetExtension
+-fi
+-
+- LIBS=$saved_LIBS
+
+- if test "$ac_cv_search_glewGetExtension" = no; then
+- GLEW_INCLUDE=
+- GLEW_LIBS=
+- if test "${with_glew:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-glew explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-glew explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
+ fi
+- if test "${with_glew_mx:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_fcgi" >&5
++echo "${ECHO_T}$ncbi_cv_lib_fcgi" >&6; }
++ if test "$ncbi_cv_lib_fcgi" = "no"; then
++ if test "${with_fastcgi:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-fastcgi explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-fastcgi explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+- else
+- if test -z "${tmp_LIBS+set}"; then
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- tmp_LIBS=`echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`
+- else
+- tmp_LIBS=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`; do
+- case "$x" in
+- -L*)
+- tmp_LIBS="$tmp_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+- done
+- tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}"
+- fi
+ fi
+- GLEW_LIBS=$tmp_LIBS
+- WithPackages="$WithPackages${WithPackagesSep}GLEW"; WithPackagesSep=" "
+- CPPFLAGS="$orig_CPPFLAGS $GLEW_INCLUDE $OPENGL_INCLUDE"
+- LIBS="$GLEW_LIBS $OPENGL_LIBS $DL_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for GLEW multi-context (MX) support (recommended)" >&5
+-echo $ECHO_N "checking for GLEW multi-context (MX) support (recommended)... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_glew_mx+set}" = set; then
++
++for ac_func in FCGX_Accept_r
++do
++as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+ cat >conftest.$ac_ext <<_ACEOF
+@@ -28517,3446 +33192,3722 @@
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#define GLEW_MX 1
+- #include <GL/glew.h>
++/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
++ For example, HP-UX 11i <limits.h> declares gettimeofday. */
++#define $ac_func innocuous_$ac_func
++
++/* System header to define __stub macros and hopefully few prototypes,
++ which can conflict with char $ac_func (); below.
++ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
++ <limits.h> exists even on freestanding compilers. */
++
++#ifdef __STDC__
++# include <limits.h>
++#else
++# include <assert.h>
++#endif
++
++#undef $ac_func
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char $ac_func ();
++/* The GNU C library defines this for functions which it implements
++ to always fail with ENOSYS. Some functions are actually named
++ something starting with __ and the normal name is an alias. */
++#if defined __stub_$ac_func || defined __stub___$ac_func
++choke me
++#endif
++
+ int
+ main ()
+ {
+-glewContextInit(NULL);
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_glew_mx=yes
++ eval "$as_ac_var=yes"
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_glew_mx=no
++ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_glew_mx" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_glew_mx" >&6
+- if test $ncbi_cv_lib_glew_mx = yes; then
+- GLEW_INCLUDE="$GLEW_INCLUDE -DGLEW_MX"
+- else
+- if test "${with_glew_mx:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- : ${GLEW_STATIC_LIBS=$GLEW_LIBDIR/libGLEW-static.a}
+- test -f "$GLEW_STATIC_LIBS" || GLEW_STATIC_LIBS=$GLEW_LIBS
+- fi
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
++if test `eval echo '${'$as_ac_var'}'` = yes; then
++ cat >>confdefs.h <<_ACEOF
++#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
++_ACEOF
++
+ fi
++done
++
+ fi
++if test "$with_fastcgi" = "no" ; then
++ FASTCGI_PATH="No_FastCgi"
++ FASTCGI_INCLUDE=
++ FASTCGI_LIBS=
++ FASTCGI_OBJS=
++else
++ WithPackages="$WithPackages${WithPackagesSep}Fast-CGI"; WithPackagesSep=" "
+
+-LDFLAGS=$orig_LDFLAGS
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBFASTCGI 1
++_ACEOF
+
++fi
+
+-## wxWidgets
+-# Insist on single-byte builds by default, per various projects' expectations.
+-: ${with_wxwidgets_ucs=no}
+-if test "$with_wxwidgets" != "no" ; then
+- case "$with_wxwidgets" in
+- yes | "" ) : ${WXWIDGETS_PATH=$NCBI/wxwidgets} ;;
+- * ) WXWIDGETS_PATH=$with_wxwidgets ;;
+- esac
+- if test -d "$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
+- -a -z "$WXWIDGETS_ARCH_PATH"; then
+- WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
+- elif test -d "$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
+- -a -z "$WXWIDGETS_ARCH_PATH"; then
+- WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
+- else
+- WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH"
++
++## NCBI SSS libraries
++if test "$with_sybase" = "no" ; then
++ if test "${with_sssdb:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+- WXWIDGETS_BINPATH=${WXWIDGETS_BINPATH:="$WXWIDGETS_ARCH_PATH/bin"}
+- WXWIDGETS_LIBPATH=${WXWIDGETS_LIBPATH:="$WXWIDGETS_ARCH_PATH/lib"}
+- WXWIDGETS_INCLUDE=
+- $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
+- # Extract the first word of "wx-config", so it can be a program name with args.
+-set dummy wx-config; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_path_wxconf+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- case $wxconf in
+- [\\/]* | ?:[\\/]*)
+- ac_cv_path_wxconf="$wxconf" # Let the user override the test with a path.
+- ;;
+- *)
+- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-as_dummy="$WXWIDGETS_BINPATH:$PATH"
+-for as_dir in $as_dummy
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_path_wxconf="$as_dir/$ac_word$ac_exec_ext"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
+ fi
+-done
+-done
+
++case "$host_os:$compiler:$compiler_version" in
++ linux*:GCC:*)
++ : ${with_included_sss=yes}
+ ;;
+ esac
+-fi
+-wxconf=$ac_cv_path_wxconf
+
+-if test -n "$wxconf"; then
+- echo "$as_me:$LINENO: result: $wxconf" >&5
+-echo "${ECHO_T}$wxconf" >&6
++if test "$with_sss" != "no" ; then
++ local_sss=${real_srcdir}/src/internal/sss
++ if test "${with_included_sss-no}" = "yes" \
++ -a -f "$local_sss/utils/sssdebug.hpp" \
++ -a -f "${local_sss}srv/cli/sssconnection.cpp"; then
++ with_included_sss=yes
++ NCBI_SSS_PATH=$local_sss
++ NCBI_SSS_INCLUDE="\$(incdir)/sss"
++ NCBI_SSS_LIBPATH="\$(libdir)"
++ WithPackages="$WithPackages${WithPackagesSep}LocalSSS"; WithPackagesSep=" "
++ if test -f "$local_sss/../msgmail2/asn/msgmail.asn"; then
++ WithPackages="$WithPackages${WithPackagesSep}LocalMSGMAIL2"; WithPackagesSep=" "
++ fi
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ with_included_sss=no
+ fi
+-
+- if test -x "$wxconf"; then
+- WXWIDGETS_ARCH_PATH=`$wxconf --exec-prefix`
+- if test -n "$with_wxwidgets_ucs"; then
+- wxcfflags=--unicode=$with_wxwidgets_ucs
++ if test "${with_sss-yes}" = yes; then
++ NCBI_SSS_PATH=${NCBI_SSS_PATH:="$NCBI/sss/BUILD"}
+ else
+- wxcfflags=
++ NCBI_SSS_PATH=$with_sss
+ fi
+- for x in `"$wxconf" $wxcfflags --libs --static 2>&5`; do
+- case "$x" in
+- -L*)
+- d=`echo $x | sed -e 's/^-L//'`
+- pcd=$d/pkgconfig
+- if test -d "$pcd"; then
+- PKG_CONFIG_PATH="${PKG_CONFIG_PATH+$PKG_CONFIG_PATH:}$pcd"
++ NCBI_SSS_INCLUDE=${NCBI_SSS_INCLUDE:="$NCBI_SSS_PATH/include"}
++ if test -z "$NCBI_SSS_LIBPATH" ; then
++ NCBI_SSS_LIBPATH="${NCBI_SSS_PATH}/lib/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"
++ if test "$with_mt" = "yes" ; then
++ NCBI_SSS_LIBPATH="${NCBI_SSS_LIBPATH}mt"
++ fi
++ fi
++ { echo "$as_me:$LINENO: checking for NCBI SSS directories${NCBI_SSS_PATH:+ in $NCBI_SSS_PATH}" >&5
++echo $ECHO_N "checking for NCBI SSS directories${NCBI_SSS_PATH:+ in $NCBI_SSS_PATH}... $ECHO_C" >&6; }
++ if test "$with_included_sss" = "yes"; then
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; } # duh
++ elif test ! -d "${NCBI_SSS_LIBPATH}" -o ! -d "${NCBI_SSS_INCLUDE}" ; then
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++ if test "${with_sss:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+- ;;
+- esac
+- done
+- export PKG_CONFIG_PATH
+ else
+- $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
+ fi
+- if test -x "$wxconf" \
+- && "$wxconf" $wxcfflags --list 2>/dev/null \
+- | grep 'Default config is gtk2' >/dev/null; then
+- gtkconf="pkg-config gtk+-2.0"
+- elif test -x "$WXWIDGETS_BINPATH/gtk-config"; then
+- gtkconf=$WXWIDGETS_BINPATH/gtk-config
+- elif gtk-config --version >/dev/null 2>&1; then
+- gtkconf=gtk-config
+- else
+- # May work without gtk-config (e.g., on Mac OS X)
+- gtkconf=:
+ fi
+- case "$host_os" in
+- darwin* )
+- baseflags=""
+- basesed='s/-isysroot [^ ]*//g; s/-arch [^ ]*//g'
+- if test -n "$SYSROOT"; then
+- deps=`"$wxconf" $wxcfflags --libs --static 2>/dev/null \
+- | sed -e 's/.*\.a//'`
+- libsed="$basesed; s/\$/ $deps/"
+- else
+- libsed=$basesed
++
++if test "$with_sss" = "no" ; then
++ if test "${with_sssutils:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+- ;;
+- * )
+- baseflags=`$gtkconf --cflags 2>/dev/null`
+- basesed=$no_usr_lib
+- libsed=$basesed
+- ;;
+- esac
+- echo "$as_me:$LINENO: checking for wxWidgets in $WXWIDGETS_ARCH_PATH" >&5
+-echo $ECHO_N "checking for wxWidgets in $WXWIDGETS_ARCH_PATH... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_wxwidgets+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
++ if test "${with_sssdb:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ NCBI_SSS_INCLUDE=
++ NCBI_SSS_LIBPATH=
++ LIBSSSUTILS=
++ LIBSSSDB=
+ else
+- if test -x "$wxconf" ; then
+- WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- WXWIDGETS_LIBS=`"$wxconf" $wxcfflags --libs | sed -e "$libsed; "`
++ if test "$with_included_sss" = "yes"; then
++ NCBI_SSS_LIBPATH= # Not needed
++ ncbi_cv_lib_sssutils=yes
++ ncbi_cv_lib_sssdb=yes
++ sssutils=sssutils
+ else
+- WXWIDGETS_LIBS=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `"$wxconf" $wxcfflags --libs | sed -e "$libsed; "`; do
+- case "$x" in
+- -L*)
+- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+- done
+- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
++ NCBI_SSS_LIBPATH="-L${NCBI_SSS_LIBPATH}"
+ fi
++ NCBI_SSS_INCLUDE="-I${NCBI_SSS_INCLUDE}"
+
+- CPPFLAGS="$WXWIDGETS_INCLUDE $orig_CPPFLAGS"
+- LIBS="$WXWIDGETS_LIBS $orig_LIBS"
++ # SSS UTILS
++ if test "$with_sssutils" != "no" ; then
++ LIBSSSUTILS="-lsssutils"
++ { echo "$as_me:$LINENO: checking for the NCBI SSS UTILS library" >&5
++echo $ECHO_N "checking for the NCBI SSS UTILS library... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_sssutils+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
++ LIBS="$NCBI_SSS_LIBPATH $LIBSSSUTILS $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <wx/wx.h>
++#include <hashtab.hpp>
+ int
+ main ()
+ {
+- wxExit();
++ (new C_HashTab(123))->Clear();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_wxwidgets=yes
++ ncbi_cv_lib_sssutils=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_wxwidgets=no
++ ncbi_cv_lib_sssutils=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+- else
+- ncbi_cv_lib_wxwidgets=no
++fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssutils" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sssutils" >&6; }
++ if test "$ncbi_cv_lib_sssutils" = yes; then
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBSSSUTILS 1
++_ACEOF
++
++ WithPackages="$WithPackages${WithPackagesSep}SSSUTILS"; WithPackagesSep=" "
++ if test -f "$local_sss/../ncbils2/asn/login.asn"; then
++ if test "$with_included_sss" = yes || \
++ grep vformat $NCBI_SSS_INCLUDE/String.hpp >/dev/null 2>&1; then
++ WithPackages="$WithPackages${WithPackagesSep}LocalNCBILS"; WithPackagesSep=" " # temporary compatibility measure
++ WithPackages="$WithPackages${WithPackagesSep}NCBILS2"; WithPackagesSep=" "
+ fi
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_wxwidgets" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_wxwidgets" >&6
+- if test "$ncbi_cv_lib_wxwidgets" = "no"; then
+- if test "${with_wxwidgets:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-wxwidgets explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-wxwidgets explicitly specified, but no usable version found." >&2;}
++ else
++ if test "${with_sssutils:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ if test "${with_sss:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
++ LIBSSSUTILS=""
+ fi
+ fi
+
+-if test "$with_wxwidgets" = "no" ; then
+- WXWIDGETS_LIBPATH="No_wxWidgets"
+- WXWIDGETS_INCLUDE=
+- WXWIDGETS_LIBS=
+- WXWIDGETS_STATIC_LIBS=
+- WXWIDGETS_GL_LIBS=
+- WXWIDGETS_GL_STATIC_LIBS=
+- WXWIDGETS_POST_LINK=:
++ # SSS DB
++ if test "$with_sssdb" != "no" ; then
++ if test "$with_mt" = "yes" ; then
++ LIBSSSDB="-lsssdb -lssssys"
+ else
+- WithPackages="$WithPackages${WithPackagesSep}wxWidgets"; WithPackagesSep=" "
+- case "`"$wxconf" $wxcfflags --version`" in
+- 2.[89].* | 2.[0-9][0-9]* )
+- WithPackages="$WithPackages${WithPackagesSep}wx2.8"; WithPackagesSep=" "
+- wxlibs=std,richtext,aui
+- ;;
+- *)
+- wxlibs=std
+- ;;
+- esac
+- # The "yes" may have been cached; get the actual settings again if needed
+- if test -z "$WXWIDGETS_INCLUDE"; then
+- WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
++ LIBSSSDB="-lsssdb"
+ fi
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- WXWIDGETS_LIBS=`$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; "`
++ { echo "$as_me:$LINENO: checking for the NCBI SSS DB library" >&5
++echo $ECHO_N "checking for the NCBI SSS DB library... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_sssdb+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- WXWIDGETS_LIBS=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; "`; do
+- case "$x" in
+- -L*)
+- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- ;;
+- *)
+- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
++ CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
++ LIBS="$NCBI_SSS_LIBPATH $LIBSSSDB $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
++ cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++#include <cslink.hpp>
++int
++main ()
++{
++ (new CSLink)->connect2server("srv", "user", "pwd", "db");
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.$ac_objext conftest$ac_exeext
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
+ esac
+- ncbi_rp_L_sep=" "
+- done
+- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
+- fi
+- WXWIDGETS_STATIC_LIBS=`"$wxconf" $wxcfflags --libs --static $wxlibs \
+- 2>/dev/null | sed -e "$basesed"`
+- if test -n "$WXWIDGETS_STATIC_LIBS"; then
+- # Allow direct use of underlying libraries with strict linkers
+- WXWIDGETS_LIBS="$WXWIDGETS_LIBS `echo $WXWIDGETS_STATIC_LIBS | sed -e 's/.*\.a *//'`"
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ncbi_cv_lib_sssdb=yes
+ else
+- WXWIDGETS_STATIC_LIBS=$WXWIDGETS_LIBS
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ncbi_cv_lib_sssdb=no
+ fi
+- WXWIDGETS_GL_LIBS=`"$wxconf" $wxcfflags --libs gl | sed -e "$basesed"`
+- WXWIDGETS_GL_STATIC_LIBS=`"$wxconf" $wxcfflags --libs gl --static \
+- 2>/dev/null | sed -e "$basesed; s|-lGLU* -lGLU*|$OPENGL_STATIC_LIBS|"`
+- : ${WXWIDGETS_GL_STATIC_LIBS:=$WXWIDGETS_GL_LIBS}
+- WXWIDGETS_POST_LINK=`"$wxconf" $wxcfflags --rezflags 2>/dev/null`
+- test -n "$WXWIDGETS_POST_LINK" || WXWIDGETS_POST_LINK=:
++
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssdb" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sssdb" >&6; }
++ if test "$ncbi_cv_lib_sssdb" = "yes"; then
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_WXWIDGETS 1
++#define HAVE_LIBSSSDB 1
+ _ACEOF
+
++ WithPackages="$WithPackages${WithPackagesSep}SSSDB"; WithPackagesSep=" "
++ else
++ if test "${with_sssdb:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+-
+-
+-## In-house Fast-CGI library
+-if test "$with_fastcgi" != "no" ; then
+- case "$with_fastcgi" in
+- yes | "" ) : ${FASTCGI_PATH:="$NCBI/fcgi-current"} ;;
+- */* ) FASTCGI_PATH=$with_fastcgi ;;
+- * ) FASTCGI_PATH=$NCBI/fcgi-${with_fastcgi} ;;
+- esac
+- if test -d "$FASTCGI_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $FASTCGI_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $FASTCGI_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- FASTCGI_PATH=$ncbi_fix_dir_tmp2
++ if test "${with_sss:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ LIBSSSDB=""
++ fi
++ fi
++fi
++
++
++# SP
++if test "$with_sp" != "no" ; then
++ if test -n "$SP_INCLUDE"; then
++ SP_GENERIC="$SP_INCLUDE/../generic"
+ else
+- case "$FASTCGI_PATH" in
+- /*) ;;
+- * ) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
+- esac
++ SP_INCLUDE="$SP_PATH/include"
++ SP_GENERIC="$SP_PATH/generic"
+ fi
+- ;;
+- /*) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
+- esac
++ if test -z "$SP_LIBPATH" ; then
++ SP_LIBPATH="${SP_PATH}/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
++ fi
++ { echo "$as_me:$LINENO: checking for SP directories${SP_PATH:+ in $SP_PATH}" >&5
++echo $ECHO_N "checking for SP directories${SP_PATH:+ in $SP_PATH}... $ECHO_C" >&6; }
++ if test ! -d "${SP_LIBPATH}" -o ! -d "${SP_INCLUDE}" ; then
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++ if test "${with_sp:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+- FASTCGI_INCLUDE="-I$FASTCGI_PATH/include${bit64_sfx}"
+- if test "$with_debug" = "no" ; then
+- FASTCGI_LIBDIR="$FASTCGI_PATH/lib${bit64_sfx}"
+ else
+- FASTCGI_LIBDIR="$FASTCGI_PATH/altlib${bit64_sfx}"
++ { echo "$as_me:$LINENO: result: yes" >&5
++echo "${ECHO_T}yes" >&6; }
+ fi
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $FASTCGI_LIBDIR; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- FASTCGI_LIBS="${ncbi_rp_L_flags} -lfcgi $NETWORK_LIBS"
++fi
++
++if test "$with_sp" != "no" ; then
++ if test -d "$SP_GENERIC"; then
++ SP_INCLUDE="-I${SP_INCLUDE} -I${SP_GENERIC}"
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $FASTCGI_LIBDIR; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- FASTCGI_LIBS="${ncbi_rp_L_flags}${ncbi_rp_R_flags} -lfcgi $NETWORK_LIBS"
++ SP_INCLUDE="-I${SP_INCLUDE}"
+ fi
+- FASTCGI_OBJS="fcgibuf"
+- LIBS="$FASTCGI_LIBS $orig_LIBS"
+- echo "$as_me:$LINENO: checking for FastCGI libraries in $FASTCGI_PATH" >&5
+-echo $ECHO_N "checking for FastCGI libraries in $FASTCGI_PATH... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_fcgi+set}" = set; then
++ SP_LIBS="-L$SP_LIBPATH -lsp"
++ { echo "$as_me:$LINENO: checking for the SP SGML library" >&5
++echo $ECHO_N "checking for the SP SGML library... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_sp+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$FASTCGI_INCLUDE $orig_CPPFLAGS"
++ CPPFLAGS="$SP_INCLUDE $orig_CPPFLAGS"
++ LIBS="$SP_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <fcgiapp.h>
++#include <SGMLApplication.h>
+ int
+ main ()
+ {
+- (void) FCGX_IsCGI();
++ SP_API::SGMLApplication app;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_fcgi=yes
++ ncbi_cv_lib_sp=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_fcgi=no
++ ncbi_cv_lib_sp=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_fcgi" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_fcgi" >&6
+- if test "$ncbi_cv_lib_fcgi" = "no"; then
+- if test "${with_fastcgi:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-fastcgi explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-fastcgi explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sp" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sp" >&6; }
++ if test "$ncbi_cv_lib_sp" = "no"; then
++ if test "${with_sp:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
++fi
+
+-for ac_func in FCGX_Accept_r
+-do
+-as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++if test "$with_sp" = "no" ; then
++ SP_INCLUDE=
++ SP_LIBS=
++else
++ WithPackages="$WithPackages${WithPackagesSep}SP"; WithPackagesSep=" "
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBSP 1
++_ACEOF
++
++fi
++
++
++## ORBacus CORBA
++if test "$with_orbacus" != no; then
++ if test "$with_orbacus" != yes; then
++ ORBACUS_PATH=$with_orbacus
++fi
++if test -d "$ORBACUS_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $ORBACUS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $ORBACUS_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ ORBACUS_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$ORBACUS_PATH" in
++ /*) ;;
++ * ) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++fi
++ fullpath=${ORBACUS_PATH}/${DEBUG_SFX}${mt_sfx}${bit64_sfx}
++ if test -f ${fullpath}/inc/OB/Config.h ; then
++ : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include -I$fullpath/inc"}
++ if test -z "${ORBACUS_LIBPATH+set}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $fullpath/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $fullpath/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ elif test -f ${ORBACUS_PATH}/include/OB/Config.h ; then
++ : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include"}
++ if test -z "${ORBACUS_LIBPATH+set}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $ORBACUS_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $ORBACUS_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ fi
++ case "$host_os:$with_mt" in
++ linux*:no) LIBJTC="-lJTC -pthread" ;;
++ *) LIBJTC="-lJTC" ;;
++ esac
++
++ case "$with_mt:$ORBACUS_LIBPATH" in
++ yes:* | *:-L*MT/lib* )
++ LIBOB="-lOB $LIBJTC"
++ LIBIMR="-lIMR"
++ ;;
++ * )
++ LIBOB="-lOB"
++ LIBIMR=
++ ;;
++ esac
++ { echo "$as_me:$LINENO: checking for ORBacus${ORBACUS_PATH:+ in $ORBACUS_PATH}" >&5
++echo $ECHO_N "checking for ORBacus${ORBACUS_PATH:+ in $ORBACUS_PATH}... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_orbacus+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
++ CPPFLAGS="$ORBACUS_INCLUDE $orig_CPPFLAGS"
++ LIBS="$ORBACUS_LIBPATH $LIBOB $NETWORK_LIBS $DL_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
+- For example, HP-UX 11i <limits.h> declares gettimeofday. */
+-#define $ac_func innocuous_$ac_func
+-
+-/* System header to define __stub macros and hopefully few prototypes,
+- which can conflict with char $ac_func (); below.
+- Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+- <limits.h> exists even on freestanding compilers. */
+-
+-#ifdef __STDC__
+-# include <limits.h>
+-#else
+-# include <assert.h>
+-#endif
+-
+-#undef $ac_func
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-{
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char $ac_func ();
+-/* The GNU C library defines this for functions which it implements
+- to always fail with ENOSYS. Some functions are actually named
+- something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
+-choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+-#endif
+-
++#include <OB/CORBA.h>
+ int
+ main ()
+ {
+-return f != $ac_func;
++
++ int c = 0;
++ char* v[] = { NULL };
++ CORBA::ORB_var orb = CORBA::ORB_init(c, v);
++ if (!CORBA::is_nil(orb)) orb->destroy();
++
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- eval "$as_ac_var=yes"
++ ncbi_cv_lib_orbacus=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-eval "$as_ac_var=no"
++ ncbi_cv_lib_orbacus=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
+-if test `eval echo '${'$as_ac_var'}'` = yes; then
+- cat >>confdefs.h <<_ACEOF
+-#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+-_ACEOF
+-
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_orbacus" >&5
++echo "${ECHO_T}$ncbi_cv_lib_orbacus" >&6; }
++ if test "$ncbi_cv_lib_orbacus" = "no"; then
++ if test "${with_orbacus:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-orbacus explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-orbacus explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+-done
+-
+ fi
+-if test "$with_fastcgi" = "no" ; then
+- FASTCGI_PATH="No_FastCgi"
+- FASTCGI_INCLUDE=
+- FASTCGI_LIBS=
+- FASTCGI_OBJS=
++fi
++if test "$with_orbacus" = no; then
++ ORBACUS_PATH=No_ORBacus
++ ORBACUS_INCLUDE=
++ ORBACUS_LIBPATH=
++ LIBOB=
++ LIBIMR=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}Fast-CGI"; WithPackagesSep=" "
++ WithPackages="$WithPackages${WithPackagesSep}ORBacus"; WithPackagesSep=" "
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBFASTCGI 1
++#define HAVE_ORBACUS 1
+ _ACEOF
+
+ fi
++# Sigh... without this, the linker pulls in the contents of the cache
++# and then gripes about missing JTC stuff.
++test -d SunWS_cache && rm -r SunWS_cache
+
+
+-## NCBI SSS libraries
+-if test "$with_sybase" = "no" ; then
+- if test "${with_sssdb:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
++## International Components for Unicode (ICU)
++if test -z "$ICU_PATH" && icu-config --version >/dev/null 2>&1; then
++ ICU_PATH=`icu-config --prefix`
+ fi
+
+-case "$host_os:$compiler:$compiler_version" in
+- linux*:GCC:*)
+- : ${with_included_sss=yes}
+- ;;
++if test "$with_icu" != "no" ; then
++ case "$with_icu" in
++ yes | "" ) ;;
++ * ) ICU_PATH=$with_icu ;;
+ esac
+-
+-if test "$with_sss" != "no" ; then
+- local_sss=${real_srcdir}/src/internal/sss
+- if test "${with_included_sss-no}" = "yes" \
+- -a -f "$local_sss/utils/sssdebug.hpp" \
+- -a -f "${local_sss}srv/cli/sssconnection.cpp"; then
+- with_included_sss=yes
+- NCBI_SSS_PATH=$local_sss
+- NCBI_SSS_INCLUDE="\$(incdir)/sss"
+- NCBI_SSS_LIBPATH="\$(libdir)"
+- WithPackages="$WithPackages${WithPackagesSep}LocalSSS"; WithPackagesSep=" "
+- if test -f "$local_sss/../msgmail2/asn/msgmail.asn"; then
+- WithPackages="$WithPackages${WithPackagesSep}LocalMSGMAIL2"; WithPackagesSep=" "
+- fi
+- else
+- with_included_sss=no
+- fi
+- NCBI_SSS_PATH=${NCBI_SSS_PATH:="$NCBI/sss/BUILD"}
+- NCBI_SSS_INCLUDE=${NCBI_SSS_INCLUDE:="$NCBI_SSS_PATH/include"}
+- if test -z "$NCBI_SSS_LIBPATH" ; then
+- NCBI_SSS_LIBPATH="${NCBI_SSS_PATH}/lib/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"
+- if test "$with_mt" = "yes" ; then
+- NCBI_SSS_LIBPATH="${NCBI_SSS_LIBPATH}mt"
+- fi
+- fi
+- echo "$as_me:$LINENO: checking for NCBI SSS directories in $NCBI_SSS_PATH" >&5
+-echo $ECHO_N "checking for NCBI SSS directories in $NCBI_SSS_PATH... $ECHO_C" >&6
+- if test "$with_included_sss" = "yes"; then
+- echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6 # duh
+- elif test ! -d "${NCBI_SSS_LIBPATH}" -o ! -d "${NCBI_SSS_INCLUDE}" ; then
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
+- if test "${with_sss:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
++ if test -d "$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
++ -a -z "$ICU_ARCH_PATH"; then
++ ICU_ARCH_PATH="$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
++ elif test -d "$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
++ -a -z "$ICU_ARCH_PATH"; then
++ ICU_ARCH_PATH="$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
+ else
+- echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6
+- fi
+-fi
+-
+-if test "$with_sss" = "no" ; then
+- if test "${with_sssutils:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- if test "${with_sssdb:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++ ICU_ARCH_PATH="$ICU_PATH"
+ fi
+- NCBI_SSS_INCLUDE=
+- NCBI_SSS_LIBPATH=
+- LIBSSSUTILS=
+- LIBSSSDB=
++ ICU_BINPATH=${ICU_BINPATH:="$ICU_ARCH_PATH/bin"}
++ ICU_LIBPATH=${ICU_LIBPATH:="$ICU_ARCH_PATH/lib"}
++ ICU_INCLUDE=
++ { echo "$as_me:$LINENO: checking for ICU${ICU_ARCH_PATH:+ in $ICU_ARCH_PATH}" >&5
++echo $ECHO_N "checking for ICU${ICU_ARCH_PATH:+ in $ICU_ARCH_PATH}... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_icu+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- if test "$with_included_sss" = "yes"; then
+- NCBI_SSS_LIBPATH= # Not needed
+- ncbi_cv_lib_sssutils=yes
+- ncbi_cv_lib_sssdb=yes
+- sssutils=sssutils
++ ICU_CONFIG=`$ICU_BINPATH/icu-config --bindir 2>/dev/null`/icu-config
++ if test -x "$ICU_CONFIG" ; then
++ ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
+ else
+- NCBI_SSS_LIBPATH="-L${NCBI_SSS_LIBPATH}"
++ ICU_LIBS=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
++ case "$x" in
++ -L*)
++ ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
++ done
++ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
+ fi
+- NCBI_SSS_INCLUDE="-I${NCBI_SSS_INCLUDE}"
++ ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
+
+- # SSS UTILS
+- if test "$with_sssutils" != "no" ; then
+- LIBSSSUTILS="-lsssutils"
+- echo "$as_me:$LINENO: checking for the NCBI SSS UTILS library" >&5
+-echo $ECHO_N "checking for the NCBI SSS UTILS library... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_sssutils+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
+- LIBS="$NCBI_SSS_LIBPATH $LIBSSSUTILS $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
++ CPPFLAGS="$ICU_INCLUDE $orig_CPPFLAGS"
++ LIBS="$ICU_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <hashtab.hpp>
++#include <unicode/unistr.h>
+ int
+ main ()
+ {
+- (new C_HashTab(123))->Clear();
++int32_t i = UNICODE_STRING_SIMPLE("foo").indexOf('f');
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_sssutils=yes
++ ncbi_cv_lib_icu=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_sssutils=no
++ ncbi_cv_lib_icu=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
++ else
++ ncbi_cv_lib_icu=no
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssutils" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sssutils" >&6
+- if test "$ncbi_cv_lib_sssutils" = yes; then
++fi
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_icu" >&5
++echo "${ECHO_T}$ncbi_cv_lib_icu" >&6; }
++ if test "$ncbi_cv_lib_icu" = "no"; then
++ if test "${with_icu:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-icu explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-icu explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ fi
++fi
++
++if test "$with_icu" = "no" ; then
++ ICU_PATH="No_ICU"
++ ICU_INCLUDE=
++ ICU_LIBS=
++ ICU_STATIC_LIBS=
++else
++ WithPackages="$WithPackages${WithPackagesSep}ICU"; WithPackagesSep=" "
++ ICU_CONFIG="`$ICU_BINPATH/icu-config --bindir`/icu-config"
++ # The "yes" may have been cached; get the actual settings again if needed
++ if test -z "$ICU_INCLUDE"; then
++ ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
++ else
++ ICU_LIBS=
++ ncbi_rp_L_sep=
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
++ case "$x" in
++ -L*)
++ ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ ;;
++ *)
++ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
++ done
++ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
++ fi
++ ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
++ fi
++ ICU_STATIC_LIBS=`$ICU_CONFIG --ldflags-libsonly | sed -e 's/-licu/-lsicu/g'`
++ ICU_STATIC_LIBS="`$ICU_CONFIG --ldflags-searchpath` $ICU_STATIC_LIBS"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBSSSUTILS 1
++#define HAVE_ICU 1
+ _ACEOF
+
+- WithPackages="$WithPackages${WithPackagesSep}SSSUTILS"; WithPackagesSep=" "
+- if test -f "$local_sss/../ncbils2/asn/login.asn"; then
+- if test "$with_included_sss" = yes || \
+- grep vformat $NCBI_SSS_INCLUDE/String.hpp >/dev/null 2>&1; then
+- WithPackages="$WithPackages${WithPackagesSep}LocalNCBILS"; WithPackagesSep=" " # temporary compatibility measure
+- WithPackages="$WithPackages${WithPackagesSep}NCBILS2"; WithPackagesSep=" "
+ fi
++
++
++### XML/XSL libraries
++if test "$with_expat" != "no"; then
++ case "$with_expat" in
++ yes | "" ) ;;
++ * ) EXPAT_PATH=$with_expat ;;
++ esac
++ if test -d "$EXPAT_PATH"; then
++ in_path=" in $EXPAT_PATH"
++ if test -z "$EXPAT_INCLUDE" -a -d "$EXPAT_PATH/include"; then
++ EXPAT_INCLUDE="-I$EXPAT_PATH/include"
+ fi
++ if test -n "$EXPAT_LIBPATH"; then
++ :
++ elif test -d "$EXPAT_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $EXPAT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ EXPAT_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- if test "${with_sssutils:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- if test "${with_sss:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $EXPAT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- LIBSSSUTILS=""
++ elif test -d "$EXPAT_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $EXPAT_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ EXPAT_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $EXPAT_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+-
+- # SSS DB
+- if test "$with_sssdb" != "no" ; then
+- if test "$with_mt" = "yes" ; then
+- LIBSSSDB="-lsssdb -lssssys"
++ EXPAT_LIBS="$EXPAT_LIBPATH -lexpat "
+ else
+- LIBSSSDB="-lsssdb"
++ EXPAT_INCLUDE=""
++ EXPAT_LIBS="-lexpat "
++ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for the NCBI SSS DB library" >&5
+-echo $ECHO_N "checking for the NCBI SSS DB library... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_sssdb+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libexpat$in_path" >&5
++echo $ECHO_N "checking for libexpat$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_expat+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
+- LIBS="$NCBI_SSS_LIBPATH $LIBSSSDB $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
++ CPPFLAGS=" $EXPAT_INCLUDE $orig_CPPFLAGS"
++ LIBS="$EXPAT_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <cslink.hpp>
++#include <expat.h>
+ int
+ main ()
+ {
+- (new CSLink)->connect2server("srv", "user", "pwd", "db");
++XML_Parser parser = XML_ParserCreate("utf-8");
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_sssdb=yes
++ ncbi_cv_lib_expat=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_sssdb=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
++ ncbi_cv_lib_expat=no
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssdb" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sssdb" >&6
+- if test "$ncbi_cv_lib_sssdb" = "yes"; then
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBSSSDB 1
+-_ACEOF
+
+- WithPackages="$WithPackages${WithPackagesSep}SSSDB"; WithPackagesSep=" "
+- else
+- if test "${with_sssdb:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
+ fi
+- if test "${with_sss:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_expat" >&5
++echo "${ECHO_T}$ncbi_cv_lib_expat" >&6; }
++ if test "$ncbi_cv_lib_expat" = "no"; then
++ if test "${with_expat:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-expat explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-expat explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+- LIBSSSDB=""
+ fi
+ fi
++ if test "$with_expat" = "no"; then
++ EXPAT_PATH="No_EXPAT"
++ EXPAT_INCLUDE=
++ EXPAT_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}EXPAT"; WithPackagesSep=" "
++ EXPAT_INCLUDE=" $EXPAT_INCLUDE"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBEXPAT 1
++_ACEOF
++
+ fi
+
+
+-# SP
+-if test "$with_sp" != "no" ; then
+- SP_PATH=${SP_PATH:="$NCBI/SP"}
+- if test -n "$SP_INCLUDE"; then
+- SP_GENERIC="$SP_INCLUDE/../generic"
++
++if test -f "${EXPAT_PATH}/lib${bit64_sfx}/libexpat-static.a"; then
++ EXPAT_STATIC_LIBS="-L${EXPAT_PATH}/lib${bit64_sfx} -lexpat-static"
+ else
+- SP_INCLUDE="$SP_PATH/include"
+- SP_GENERIC="$SP_PATH/generic"
++ EXPAT_STATIC_LIBS=${EXPAT_LIBS}
+ fi
+- if test -z "$SP_LIBPATH" ; then
+- SP_LIBPATH="${SP_PATH}/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
++vpath="$SABLOT_PATH/${compiler_vpfx}build"
++test -d "$vpath" && SABLOT_PATH=$vpath
++if test -d "$SABLOT_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $SABLOT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $SABLOT_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ SABLOT_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$SABLOT_PATH" in
++ /*) ;;
++ * ) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+- echo "$as_me:$LINENO: checking for SP directories in $SP_PATH" >&5
+-echo $ECHO_N "checking for SP directories in $SP_PATH... $ECHO_C" >&6
+- if test ! -d "${SP_LIBPATH}" -o ! -d "${SP_INCLUDE}" ; then
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
+- if test "${with_sp:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
++ ;;
++ /*) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++fi
++if test "$with_sablot" != "no"; then
++ case "$with_sablot" in
++ yes | "" ) ;;
++ * ) SABLOT_PATH=$with_sablot ;;
++ esac
++ if test -d "$SABLOT_PATH"; then
++ in_path=" in $SABLOT_PATH"
++ if test -z "$SABLOT_INCLUDE" -a -d "$SABLOT_PATH/include"; then
++ SABLOT_INCLUDE="-I$SABLOT_PATH/include"
++ fi
++ if test -n "$SABLOT_LIBPATH"; then
++ :
++ elif test -d "$SABLOT_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $SABLOT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ SABLOT_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $SABLOT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
++ elif test -d "$SABLOT_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $SABLOT_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ SABLOT_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $SABLOT_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+-
+-if test "$with_sp" != "no" ; then
+- if test -d "$SP_GENERIC"; then
+- SP_INCLUDE="-I${SP_INCLUDE} -I${SP_GENERIC}"
++ SABLOT_LIBS="$SABLOT_LIBPATH -lsablot $EXPAT_LIBS"
+ else
+- SP_INCLUDE="-I${SP_INCLUDE}"
++ SABLOT_INCLUDE=""
++ SABLOT_LIBS="-lsablot $EXPAT_LIBS"
++ in_path=
+ fi
+- SP_LIBS="-L$SP_LIBPATH -lsp"
+- echo "$as_me:$LINENO: checking for the SP SGML library" >&5
+-echo $ECHO_N "checking for the SP SGML library... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_sp+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libsablot$in_path" >&5
++echo $ECHO_N "checking for libsablot$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_sablot+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$SP_INCLUDE $orig_CPPFLAGS"
+- LIBS="$SP_LIBS $orig_LIBS"
++ CPPFLAGS=" $SABLOT_INCLUDE $orig_CPPFLAGS"
++ LIBS="$SABLOT_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <SGMLApplication.h>
++#include <sablot.h>
+ int
+ main ()
+ {
+- SP_API::SGMLApplication app;
++SDOM_Document* D; int x = SablotParse(NULL, "file:/dev/null", D);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_sp=yes
++ ncbi_cv_lib_sablot=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_sp=no
++ ncbi_cv_lib_sablot=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sp" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sp" >&6
+- if test "$ncbi_cv_lib_sp" = "no"; then
+- if test "${with_sp:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sablot" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sablot" >&6; }
++ if test "$ncbi_cv_lib_sablot" = "no"; then
++ if test "${with_sablot:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sablot explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sablot explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+-
+-if test "$with_sp" = "no" ; then
+- SP_INCLUDE=
+- SP_LIBS=
++ if test "$with_sablot" = "no"; then
++ SABLOT_PATH="No_SABLOT"
++ SABLOT_INCLUDE=
++ SABLOT_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}SP"; WithPackagesSep=" "
++ WithPackages="$WithPackages${WithPackagesSep}SABLOT"; WithPackagesSep=" "
++ SABLOT_INCLUDE=" $SABLOT_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBSP 1
++#define HAVE_LIBSABLOT 1
+ _ACEOF
+
+ fi
+
+
+-## ORBacus CORBA
+-if test "${with_orbacus:-yes}" = yes; then
+- if test -d $NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT; then
+- : ${ORBACUS_PATH=$NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT}
+- else
+- : ${ORBACUS_PATH=$NCBI/corba/OB-4.0.1}
+- fi
+-elif test "$with_orbacus" != no; then
+- ORBACUS_PATH=$with_orbacus
+-fi
+-if test -d "$ORBACUS_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $ORBACUS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $ORBACUS_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- ORBACUS_PATH=$ncbi_fix_dir_tmp2
++
++test -d SunWS_cache && rm -r SunWS_cache
++if test -f "${SABLOT_PATH}/lib${bit64_sfx}/libsablot-static.a"; then
++ SABLOT_STATIC_LIBS="-L${SABLOT_PATH}/lib${bit64_sfx} -lsablot-static $EXPAT_STATIC_LIBS"
+ else
+- case "$ORBACUS_PATH" in
+- /*) ;;
+- * ) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
+- esac
++ SABLOT_STATIC_LIBS=${SABLOT_LIBS}
+ fi
+- ;;
+- /*) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
++
++# test -d "$LIBXML_PATH" || LIBXML_PATH=`xml2-config --prefix 2>/dev/null`
++if test "$with_libxml" != "no"; then
++ case "$with_libxml" in
++ yes | "" ) ;;
++ * ) LIBXML_PATH=$with_libxml ;;
+ esac
+-fi
+-if test "$with_orbacus" != no; then
+- fullpath=${ORBACUS_PATH}/${DEBUG_SFX}${mt_sfx}${bit64_sfx}
+- if test -f ${fullpath}/inc/OB/Config.h ; then
+- : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include -I$fullpath/inc"}
+- if test -z "${ORBACUS_LIBPATH+set}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $fullpath/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
++ for pfx in "$compiler_vpfx" "$compiler_pfx" "" ; do
++ vpath=$LIBXML_PATH/$pfx${DEBUG_SFX}${mt_sfx}${bit64_sfx}
++ if test -d "$vpath" ; then
++ LIBXML_PATH=$vpath
++ break
++ fi
+ done
+- ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
++ if test -d "$LIBXML_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $LIBXML_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $LIBXML_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ LIBXML_PATH=$ncbi_fix_dir_tmp2
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $fullpath/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ case "$LIBXML_PATH" in
++ /*) ;;
++ * ) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ in_path=" in $LIBXML_PATH"
++ if test -n "$LIBXML_INCLUDE"; then
++ :
++ elif test -d "$LIBXML_PATH/include/libxml2/libxml"; then
++ LIBXML_INCLUDE="-I$LIBXML_PATH/include/libxml2 -I$LIBXML_PATH/include"
++ elif test -d "$LIBXML_PATH/include/libxml"; then
++ LIBXML_INCLUDE="-I$LIBXML_PATH/include";
+ fi
++ if test -d "$LIBXML_PATH/lib${bit64_sfx}"; then
++ LIBXML_LIBPATH_="$LIBXML_PATH/lib${bit64_sfx}"
++ elif test -d "$LIBXML_PATH/lib"; then
++ LIBXML_LIBPATH_="$LIBXML_PATH/lib"
+ fi
+- elif test -f ${ORBACUS_PATH}/include/OB/Config.h ; then
+- : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include"}
+- if test -z "${ORBACUS_LIBPATH+set}"; then
++ if test -z "${LIBXML_LIBPATH+set}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $ORBACUS_PATH/lib; do
++ for x in $LIBXML_LIBPATH_; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
++ LIBXML_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $ORBACUS_PATH/lib; do
++ for x in $LIBXML_LIBPATH_; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ LIBXML_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
++ LIBXML_LIBS="$LIBXML_LIBPATH -lxml2"
++ else
++ LIBXML_INCLUDE="-I/usr/include/libxml2"
++ LIBXML_LIBS="-lxml2"
++ in_path=
+ fi
+- case "$host_os:$with_mt" in
+- linux*:no) LIBJTC="-lJTC -pthread" ;;
+- *) LIBJTC="-lJTC" ;;
+- esac
+-
+- case "$with_mt:$ORBACUS_LIBPATH" in
+- yes:* | *:-L*MT/lib* )
+- LIBOB="-lOB $LIBJTC"
+- LIBIMR="-lIMR"
+- ;;
+- * )
+- LIBOB="-lOB"
+- LIBIMR=
+- ;;
+- esac
+- echo "$as_me:$LINENO: checking for ORBacus in $ORBACUS_PATH" >&5
+-echo $ECHO_N "checking for ORBacus in $ORBACUS_PATH... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_orbacus+set}" = set; then
++ LIBXML_LIBS="$LIBXML_LIBS $ICONV_LIBS"
++ { echo "$as_me:$LINENO: checking for libxml2$in_path" >&5
++echo $ECHO_N "checking for libxml2$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_libxml+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$ORBACUS_INCLUDE $orig_CPPFLAGS"
+- LIBS="$ORBACUS_LIBPATH $LIBOB $NETWORK_LIBS $DL_LIBS $orig_LIBS"
++ CPPFLAGS="$LIBXML_INCLUDE $orig_CPPFLAGS"
++ LIBS="$LIBXML_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <OB/CORBA.h>
++#include <libxml/parser.h>
+ int
+ main ()
+ {
+-
+- int c = 0;
+- char* v[] = { NULL };
+- CORBA::ORB_var orb = CORBA::ORB_init(c, v);
+- if (!CORBA::is_nil(orb)) orb->destroy();
+-
++xmlDocPtr doc = xmlParseFile("foo.xml");
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_orbacus=yes
++ ncbi_cv_lib_libxml=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_orbacus=no
++ ncbi_cv_lib_libxml=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_orbacus" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_orbacus" >&6
+- if test "$ncbi_cv_lib_orbacus" = "no"; then
+- if test "${with_orbacus:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-orbacus explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-orbacus explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxml" >&5
++echo "${ECHO_T}$ncbi_cv_lib_libxml" >&6; }
++ if test "$ncbi_cv_lib_libxml" = "no"; then
++ if test "${with_libxml:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-libxml explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-libxml explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+-if test "$with_orbacus" = no; then
+- ORBACUS_PATH=No_ORBacus
+- ORBACUS_INCLUDE=
+- ORBACUS_LIBPATH=
+- LIBOB=
+- LIBIMR=
++if test "$with_libxml" = "no"; then
++ LIBXML_PATH="No_LIBXML"
++ LIBXML_INCLUDE=
++ LIBXML_LIBPATH_=
++ LIBXML_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}ORBacus"; WithPackagesSep=" "
++ WithPackages="$WithPackages${WithPackagesSep}LIBXML"; WithPackagesSep=" "
++ LIBXML_INCLUDE="$LIBXML_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_ORBACUS 1
++#define HAVE_LIBXML 1
+ _ACEOF
+
+ fi
+-# Sigh... without this, the linker pulls in the contents of the cache
+-# and then gripes about missing JTC stuff.
+-test -d SunWS_cache && rm -r SunWS_cache
+
+
+-## International Components for Unicode (ICU)
+-if test -z "$ICU_PATH" && icu-config --version >/dev/null 2>&1; then
+- ICU_PATH=`icu-config --prefix`
++
++if test -f "${LIBXML_LIBPATH_}/libxml2-static.a"; then
++ LIBXML_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxml2-static"
++else
++ LIBXML_STATIC_LIBS=${LIBXML_LIBS}
+ fi
+
+-if test "$with_icu" != "no" ; then
+- case "$with_icu" in
+- yes | "" ) : ${ICU_PATH=$NCBI/icu} ;;
+- * ) ICU_PATH=$with_icu ;;
++: ${LIBXSLT_PATH=$LIBXML_PATH}
++if test "$with_libxslt" != "no"; then
++ case "$with_libxslt" in
++ yes | "" ) ;;
++ * ) LIBXSLT_PATH=$with_libxslt ;;
+ esac
+- if test -d "$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
+- -a -z "$ICU_ARCH_PATH"; then
+- ICU_ARCH_PATH="$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
+- elif test -d "$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
+- -a -z "$ICU_ARCH_PATH"; then
+- ICU_ARCH_PATH="$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
+- else
+- ICU_ARCH_PATH="$ICU_PATH"
++ if test -d "$LIBXSLT_PATH"; then
++ in_path=" in $LIBXSLT_PATH"
++ if test -z "$LIBXSLT_INCLUDE" -a -d "$LIBXSLT_PATH/include"; then
++ LIBXSLT_INCLUDE="-I$LIBXSLT_PATH/include"
+ fi
+- ICU_BINPATH=${ICU_BINPATH:="$ICU_ARCH_PATH/bin"}
+- ICU_LIBPATH=${ICU_LIBPATH:="$ICU_ARCH_PATH/lib"}
+- ICU_INCLUDE=
+- echo "$as_me:$LINENO: checking for ICU in $ICU_ARCH_PATH" >&5
+-echo $ECHO_N "checking for ICU in $ICU_ARCH_PATH... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_icu+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- ICU_CONFIG=`$ICU_BINPATH/icu-config --bindir 2>/dev/null`/icu-config
+- if test -x "$ICU_CONFIG" ; then
+- ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
++ if test -n "$LIBXSLT_LIBPATH"; then
++ :
++ elif test -d "$LIBXSLT_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
++ for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- ICU_LIBS=
+- ncbi_rp_L_sep=
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
+- case "$x" in
+- -L*)
+- ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+- ;;
+- *)
+- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ done
++ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ elif test -d "$LIBXSLT_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $LIBXSLT_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
++ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
++ for x in $LIBXSLT_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
+ done
+- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
++ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
+-
+- CPPFLAGS="$ICU_INCLUDE $orig_CPPFLAGS"
+- LIBS="$ICU_LIBS $orig_LIBS"
++ fi
++ LIBXSLT_LIBS="$LIBXSLT_LIBPATH -lxslt "
++ else
++ LIBXSLT_INCLUDE=""
++ LIBXSLT_LIBS="-lxslt "
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for libxslt$in_path" >&5
++echo $ECHO_N "checking for libxslt$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_libxslt+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ CPPFLAGS="$LIBXML_INCLUDE $LIBXSLT_INCLUDE $orig_CPPFLAGS"
++ LIBS="$LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <unicode/unistr.h>
++#include <libxslt/xslt.h>
+ int
+ main ()
+ {
+-int32_t i = UNICODE_STRING_SIMPLE("foo").indexOf('f');
++xsltInit()
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_icu=yes
++ ncbi_cv_lib_libxslt=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_icu=no
++ ncbi_cv_lib_libxslt=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+- else
+- ncbi_cv_lib_icu=no
+ fi
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_icu" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_icu" >&6
+- if test "$ncbi_cv_lib_icu" = "no"; then
+- if test "${with_icu:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-icu explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-icu explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxslt" >&5
++echo "${ECHO_T}$ncbi_cv_lib_libxslt" >&6; }
++ if test "$ncbi_cv_lib_libxslt" = "no"; then
++ if test "${with_libxslt:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-libxslt explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-libxslt explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
++ if test "$with_libxslt" = "no"; then
++ LIBXSLT_PATH="No_LIBXSLT"
++ LIBXSLT_INCLUDE=
++ LIBXSLT_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}LIBXSLT"; WithPackagesSep=" "
++ LIBXSLT_INCLUDE="$LIBXML_INCLUDE $LIBXSLT_INCLUDE"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBXSLT 1
++_ACEOF
++
++ fi
+
+-if test "$with_icu" = "no" ; then
+- ICU_PATH="No_ICU"
+- ICU_INCLUDE=
+- ICU_LIBS=
+- ICU_STATIC_LIBS=
++
++
++
++# XXX - they might be in different directories in some setups
++if test -f "${LIBXML_LIBPATH_}/libxslt-static.a"; then
++ LIBXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxslt-static"
+ else
+- WithPackages="$WithPackages${WithPackagesSep}ICU"; WithPackagesSep=" "
+- ICU_CONFIG="`$ICU_BINPATH/icu-config --bindir`/icu-config"
+- # The "yes" may have been cached; get the actual settings again if needed
+- if test -z "$ICU_INCLUDE"; then
+- ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
++ LIBXSLT_STATIC_LIBS=${LIBXSLT_LIBS}
++fi
++
++# Extract the first word of "xsltproc", so it can be a program name with args.
++set dummy xsltproc; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_XSLTPROC+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- ICU_LIBS=
+- ncbi_rp_L_sep=
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
+- case "$x" in
+- -L*)
+- ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
++ case $XSLTPROC in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_XSLTPROC="$XSLTPROC" # Let the user override the test with a path.
+ ;;
+ *)
+- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_dummy="$LIBXSLT_PATH/bin:`dirname $LIBXML_LIBPATH_ 2>/dev/null`/bin:$PATH"
++for as_dir in $as_dummy
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_XSLTPROC="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++done
++IFS=$as_save_IFS
++
++ test -z "$ac_cv_path_XSLTPROC" && ac_cv_path_XSLTPROC=":"
+ ;;
+ esac
+- ncbi_rp_L_sep=" "
+- done
+- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
+ fi
+- ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
++XSLTPROC=$ac_cv_path_XSLTPROC
++if test -n "$XSLTPROC"; then
++ { echo "$as_me:$LINENO: result: $XSLTPROC" >&5
++echo "${ECHO_T}$XSLTPROC" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
+ fi
+- ICU_STATIC_LIBS=`$ICU_CONFIG --ldflags-libsonly | sed -e 's/-licu/-lsicu/g'`
+- ICU_STATIC_LIBS="`$ICU_CONFIG --ldflags-searchpath` $ICU_STATIC_LIBS"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_ICU 1
+-_ACEOF
+
+-fi
+
+
+-### XML/XSL libraries
+-if test -d "$NCBI/expat/include"; then
+- : ${EXPAT_PATH=$NCBI/expat}
+-fi
+-if test "$with_expat" != "no"; then
+- case "$with_expat" in
++: ${LIBEXSLT_PATH=$LIBXSLT_PATH}
++if test "$with_libexslt" != "no"; then
++ case "$with_libexslt" in
+ yes | "" ) ;;
+- * ) EXPAT_PATH=$with_expat ;;
++ * ) LIBEXSLT_PATH=$with_libexslt ;;
+ esac
+- if test -d "$EXPAT_PATH"; then
+- in_path=" in $EXPAT_PATH"
+- if test -z "$EXPAT_INCLUDE" -a -d "$EXPAT_PATH/include"; then
+- EXPAT_INCLUDE="-I$EXPAT_PATH/include"
++ if test -d "$LIBEXSLT_PATH"; then
++ in_path=" in $LIBEXSLT_PATH"
++ if test -z "$LIBEXSLT_INCLUDE" -a -d "$LIBEXSLT_PATH/include"; then
++ LIBEXSLT_INCLUDE="-I$LIBEXSLT_PATH/include"
+ fi
+- if test -n "$EXPAT_LIBPATH"; then
++ if test -n "$LIBEXSLT_LIBPATH"; then
+ :
+- elif test -d "$EXPAT_PATH/lib${bit64_sfx}"; then
++ elif test -d "$LIBEXSLT_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $EXPAT_PATH/lib${bit64_sfx}; do
++ for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- EXPAT_LIBPATH="${ncbi_rp_L_flags}"
++ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $EXPAT_PATH/lib${bit64_sfx}; do
++ for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$EXPAT_PATH/lib"; then
++ elif test -d "$LIBEXSLT_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $EXPAT_PATH/lib; do
++ for x in $LIBEXSLT_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- EXPAT_LIBPATH="${ncbi_rp_L_flags}"
++ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $EXPAT_PATH/lib; do
++ for x in $LIBEXSLT_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- EXPAT_LIBS="$EXPAT_LIBPATH -lexpat "
++ LIBEXSLT_LIBS="$LIBEXSLT_LIBPATH -lexslt "
+ else
+- EXPAT_INCLUDE=""
+- EXPAT_LIBS="-lexpat "
++ LIBEXSLT_INCLUDE=""
++ LIBEXSLT_LIBS="-lexslt "
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libexpat$in_path" >&5
+-echo $ECHO_N "checking for libexpat$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_expat+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libexslt$in_path" >&5
++echo $ECHO_N "checking for libexslt$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_libexslt+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $EXPAT_INCLUDE $orig_CPPFLAGS"
+- LIBS="$EXPAT_LIBS $orig_LIBS"
++ CPPFLAGS="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE $orig_CPPFLAGS"
++ LIBS="$LIBEXSLT_LIBS $LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <expat.h>
++#include <libexslt/exslt.h>
+ int
+ main ()
+ {
+-XML_Parser parser = XML_ParserCreate("utf-8");
++exsltRegisterAll()
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_expat=yes
++ ncbi_cv_lib_libexslt=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_expat=no
++ ncbi_cv_lib_libexslt=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_expat" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_expat" >&6
+- if test "$ncbi_cv_lib_expat" = "no"; then
+- if test "${with_expat:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-expat explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-expat explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_libexslt" >&5
++echo "${ECHO_T}$ncbi_cv_lib_libexslt" >&6; }
++ if test "$ncbi_cv_lib_libexslt" = "no"; then
++ if test "${with_libexslt:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-libexslt explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-libexslt explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_expat" = "no"; then
+- EXPAT_PATH="No_EXPAT"
+- EXPAT_INCLUDE=
+- EXPAT_LIBS=
++ if test "$with_libexslt" = "no"; then
++ LIBEXSLT_PATH="No_LIBEXSLT"
++ LIBEXSLT_INCLUDE=
++ LIBEXSLT_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}EXPAT"; WithPackagesSep=" "
+- EXPAT_INCLUDE=" $EXPAT_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}LIBEXSLT"; WithPackagesSep=" "
++ LIBEXSLT_INCLUDE="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBEXPAT 1
++#define HAVE_LIBEXSLT 1
+ _ACEOF
+
+ fi
+
+
+
+-if test -f "${EXPAT_PATH}/lib${bit64_sfx}/libexpat-static.a"; then
+- EXPAT_STATIC_LIBS="-L${EXPAT_PATH}/lib${bit64_sfx} -lexpat-static"
++
++# XXX - they might be in different directories in some setups
++if test -f "${LIBXML_LIBPATH_}/libexslt-static.a"; then
++ LIBEXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lexslt-static"
+ else
+- EXPAT_STATIC_LIBS=${EXPAT_LIBS}
++ LIBEXSLT_STATIC_LIBS=${LIBEXSLT_LIBS}
+ fi
+-: ${SABLOT_PATH=$NCBI/Sablot}
+-vpath="$SABLOT_PATH/${compiler_vpfx}build"
+-test -d "$vpath" && SABLOT_PATH=$vpath
+-if test -d "$SABLOT_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $SABLOT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++
++if test "$with_xerces" != no; then
++ if test "${with_xerces-yes}" != yes; then
++ XERCES_PATH=$with_xerces
++ fi
++ if test -d "$XERCES_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+ case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $SABLOT_PATH && $smart_pwd 2>/dev/null`
++ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- SABLOT_PATH=$ncbi_fix_dir_tmp2
++ XERCES_PATH=$ncbi_fix_dir_tmp2
+ else
+- case "$SABLOT_PATH" in
++ case "$XERCES_PATH" in
+ /*) ;;
+- * ) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
++ * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+ ;;
+- /*) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
++ /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+-if test "$with_sablot" != "no"; then
+- case "$with_sablot" in
+- yes | "" ) ;;
+- * ) SABLOT_PATH=$with_sablot ;;
++ vpath="$XERCES_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
++ if test -d "$vpath/lib"; then
++ XERCES_PATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XERCES_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$XERCES_PATH" in
++ /*) ;;
++ * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ elif test -d "$vpath"; then
++ : ${XERCES_LIBPATH=$vpath}
++ ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XERCES_LIBPATH=$ncbi_fix_dir_tmp2
++ else
++ case "$XERCES_LIBPATH" in
++ /*) ;;
++ * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
++ else
++ vpath="$XERCES_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
++ if test -d "$vpath/lib"; then
++ XERCES_PATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XERCES_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$XERCES_PATH" in
++ /*) ;;
++ * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ elif test -d "$vpath"; then
++ XERCES_LIBPATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XERCES_LIBPATH=$ncbi_fix_dir_tmp2
++ else
++ case "$XERCES_LIBPATH" in
++ /*) ;;
++ * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
+ esac
+- if test -d "$SABLOT_PATH"; then
+- in_path=" in $SABLOT_PATH"
+- if test -z "$SABLOT_INCLUDE" -a -d "$SABLOT_PATH/include"; then
+- SABLOT_INCLUDE="-I$SABLOT_PATH/include"
+ fi
+- if test -n "$SABLOT_LIBPATH"; then
+- :
+- elif test -d "$SABLOT_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SABLOT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- SABLOT_LIBPATH="${ncbi_rp_L_flags}"
++ fi
++ if test -d "$XERCES_PATH"; then
++ in_path=" in $XERCES_PATH"
++ : ${XERCES_INCLUDE=-I$XERCES_PATH/include}
++ : ${XERCES_LIBPATH=$XERCES_PATH/lib}
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SABLOT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ in_path=''
+ fi
+- elif test -d "$SABLOT_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SABLOT_PATH/lib; do
++ for x in $XERCES_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- SABLOT_LIBPATH="${ncbi_rp_L_flags}"
++ XERCES_LIBPATH_="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SABLOT_PATH/lib; do
++ for x in $XERCES_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- fi
+- SABLOT_LIBS="$SABLOT_LIBPATH -lsablot $EXPAT_LIBS"
+- else
+- SABLOT_INCLUDE=""
+- SABLOT_LIBS="-lsablot $EXPAT_LIBS"
+- in_path=
++ XERCES_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- echo "$as_me:$LINENO: checking for libsablot$in_path" >&5
+-echo $ECHO_N "checking for libsablot$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_sablot+set}" = set; then
++ XERCES_LIBS="$XERCES_LIBPATH_ -lxerces-c"
++ { echo "$as_me:$LINENO: checking for Xerces-C++$in_path" >&5
++echo $ECHO_N "checking for Xerces-C++$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_xerces_c+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $SABLOT_INCLUDE $orig_CPPFLAGS"
+- LIBS="$SABLOT_LIBS $orig_LIBS"
++ CPPFLAGS="$XERCES_INCLUDE $orig_CPPFLAGS"
++ LIBS="$XERCES_LIBS $ICU_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <sablot.h>
++#include <xercesc/dom/DOM.hpp>
+ int
+ main ()
+ {
+-SDOM_Document* D; int x = SablotParse(NULL, "file:/dev/null", D);
++xercesc::DOMImplementation* impl
++ = xercesc::DOMImplementationRegistry::getDOMImplementation
++ (xercesc::XMLString::transcode("XML 1.0"));
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_sablot=yes
++ ncbi_cv_lib_xerces_c=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_sablot=no
++ ncbi_cv_lib_xerces_c=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sablot" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sablot" >&6
+- if test "$ncbi_cv_lib_sablot" = "no"; then
+- if test "${with_sablot:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sablot explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sablot explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_xerces_c" >&5
++echo "${ECHO_T}$ncbi_cv_lib_xerces_c" >&6; }
++ if test $ncbi_cv_lib_xerces_c = yes; then
++ if test -f "$XERCES_LIBPATH/libxerces-c-static.a"; then
++ XERCES_STATIC_LIBS="-L$XERCES_LIBPATH -lxerces-c-static $CURL_LIBS"
++ else
++ XERCES_STATIC_LIBS=$XERCES_LIBS
++ fi
++ else
++ if test "${with_xerces:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-xerces explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-xerces explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_sablot" = "no"; then
+- SABLOT_PATH="No_SABLOT"
+- SABLOT_INCLUDE=
+- SABLOT_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}SABLOT"; WithPackagesSep=" "
+- SABLOT_INCLUDE=" $SABLOT_INCLUDE"
++if test "$with_xerces" != no; then
++ WithPackages="$WithPackages${WithPackagesSep}Xerces"; WithPackagesSep=" "
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBSABLOT 1
++#define HAVE_XERCES 1
+ _ACEOF
+
+- fi
+-
+-
+-
+-test -d SunWS_cache && rm -r SunWS_cache
+-if test -f "${SABLOT_PATH}/lib${bit64_sfx}/libsablot-static.a"; then
+- SABLOT_STATIC_LIBS="-L${SABLOT_PATH}/lib${bit64_sfx} -lsablot-static $EXPAT_STATIC_LIBS"
+ else
+- SABLOT_STATIC_LIBS=${SABLOT_LIBS}
++ XERCES_INCLUDE=
++ XERCES_LIBS=
++ XERCES_STATIC_LIBS=
+ fi
+
+-: ${LIBXML_PATH=$NCBI/libxml}
+-# test -d "$LIBXML_PATH" || LIBXML_PATH=`xml2-config --prefix 2>/dev/null`
+-if test "$with_libxml" != "no"; then
+- case "$with_libxml" in
+- yes | "" ) ;;
+- * ) LIBXML_PATH=$with_libxml ;;
+- esac
+- for pfx in "$compiler_vpfx" "$compiler_pfx" "" ; do
+- vpath=$LIBXML_PATH/$pfx${DEBUG_SFX}${mt_sfx}${bit64_sfx}
+- if test -d "$vpath" ; then
+- LIBXML_PATH=$vpath
+- break
++if test "$with_xalan" != no; then
++ if test "${with_xalan-yes}" != yes; then
++ XALAN_PATH=$with_xalan
+ fi
+- done
+- if test -d "$LIBXML_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $LIBXML_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ if test -d "$XALAN_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+ case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $LIBXML_PATH && $smart_pwd 2>/dev/null`
++ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- LIBXML_PATH=$ncbi_fix_dir_tmp2
++ XALAN_PATH=$ncbi_fix_dir_tmp2
+ else
+- case "$LIBXML_PATH" in
++ case "$XALAN_PATH" in
+ /*) ;;
+- * ) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
++ * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+ ;;
+- /*) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
++ /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+- in_path=" in $LIBXML_PATH"
+- if test -n "$LIBXML_INCLUDE"; then
+- :
+- elif test -d "$LIBXML_PATH/include/libxml2/libxml"; then
+- LIBXML_INCLUDE="-I$LIBXML_PATH/include/libxml2 -I$LIBXML_PATH/include"
+- elif test -d "$LIBXML_PATH/include/libxml"; then
+- LIBXML_INCLUDE="-I$LIBXML_PATH/include";
+- fi
+- if test -d "$LIBXML_PATH/lib${bit64_sfx}"; then
+- LIBXML_LIBPATH_="$LIBXML_PATH/lib${bit64_sfx}"
+- elif test -d "$LIBXML_PATH/lib"; then
+- LIBXML_LIBPATH_="$LIBXML_PATH/lib"
+ fi
+- if test -z "${LIBXML_LIBPATH+set}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $LIBXML_LIBPATH_; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- LIBXML_LIBPATH="${ncbi_rp_L_flags}"
++ vpath="$XALAN_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
++ if test -d "$vpath/lib"; then
++ XALAN_PATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XALAN_PATH=$ncbi_fix_dir_tmp2
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $LIBXML_LIBPATH_; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- LIBXML_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
++ case "$XALAN_PATH" in
++ /*) ;;
++ * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+- LIBXML_LIBS="$LIBXML_LIBPATH -lxml2"
++ ;;
++ /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ elif test -d "$vpath"; then
++ : ${XALAN_LIBPATH=$vpath}
++ ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XALAN_LIBPATH=$ncbi_fix_dir_tmp2
+ else
+- LIBXML_INCLUDE="-I/usr/include/libxml2"
+- LIBXML_LIBS="-lxml2"
+- in_path=
++ case "$XALAN_LIBPATH" in
++ /*) ;;
++ * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+- LIBXML_LIBS="$LIBXML_LIBS $ICONV_LIBS"
+- echo "$as_me:$LINENO: checking for libxml2$in_path" >&5
+-echo $ECHO_N "checking for libxml2$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_libxml+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- CPPFLAGS="$LIBXML_INCLUDE $orig_CPPFLAGS"
+- LIBS="$LIBXML_LIBS $orig_LIBS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <libxml/parser.h>
+-int
+-main ()
+-{
+-xmlDocPtr doc = xmlParseFile("foo.xml");
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_lib_libxml=yes
++ ;;
++ /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
+ else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_libxml=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxml" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_libxml" >&6
+- if test "$ncbi_cv_lib_libxml" = "no"; then
+- if test "${with_libxml:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-libxml explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-libxml explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+-fi
+-if test "$with_libxml" = "no"; then
+- LIBXML_PATH="No_LIBXML"
+- LIBXML_INCLUDE=
+- LIBXML_LIBPATH_=
+- LIBXML_LIBS=
++ vpath="$XALAN_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
++ if test -d "$vpath/lib"; then
++ XALAN_PATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XALAN_PATH=$ncbi_fix_dir_tmp2
+ else
+- WithPackages="$WithPackages${WithPackagesSep}LIBXML"; WithPackagesSep=" "
+- LIBXML_INCLUDE="$LIBXML_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBXML 1
+-_ACEOF
+-
++ case "$XALAN_PATH" in
++ /*) ;;
++ * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+-
+-
+-
+-if test -f "${LIBXML_LIBPATH_}/libxml2-static.a"; then
+- LIBXML_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxml2-static"
++ ;;
++ /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ elif test -d "$vpath"; then
++ XALAN_LIBPATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ XALAN_LIBPATH=$ncbi_fix_dir_tmp2
+ else
+- LIBXML_STATIC_LIBS=${LIBXML_LIBS}
++ case "$XALAN_LIBPATH" in
++ /*) ;;
++ * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+-
+-: ${LIBXSLT_PATH=$LIBXML_PATH}
+-if test "$with_libxslt" != "no"; then
+- case "$with_libxslt" in
+- yes | "" ) ;;
+- * ) LIBXSLT_PATH=$with_libxslt ;;
++ ;;
++ /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
+ esac
+- if test -d "$LIBXSLT_PATH"; then
+- in_path=" in $LIBXSLT_PATH"
+- if test -z "$LIBXSLT_INCLUDE" -a -d "$LIBXSLT_PATH/include"; then
+- LIBXSLT_INCLUDE="-I$LIBXSLT_PATH/include"
+ fi
+- if test -n "$LIBXSLT_LIBPATH"; then
+- :
+- elif test -d "$LIBXSLT_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
++ fi
++ if test -d "$XALAN_PATH"; then
++ in_path=" in $XALAN_PATH"
++ : ${XALAN_INCLUDE=-I$XALAN_PATH/include}
++ : ${XALAN_LIBPATH=$XALAN_PATH/lib}
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ in_path=''
+ fi
+- elif test -d "$LIBXSLT_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $LIBXSLT_PATH/lib; do
++ for x in $XALAN_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
++ XALAN_LIBPATH_="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $LIBXSLT_PATH/lib; do
++ for x in $XALAN_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- fi
+- LIBXSLT_LIBS="$LIBXSLT_LIBPATH -lxslt "
+- else
+- LIBXSLT_INCLUDE=""
+- LIBXSLT_LIBS="-lxslt "
+- in_path=
++ XALAN_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- echo "$as_me:$LINENO: checking for libxslt$in_path" >&5
+-echo $ECHO_N "checking for libxslt$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_libxslt+set}" = set; then
++ XALAN_LIBS="$XALAN_LIBPATH_ -lxalan-c -lxalanMsg"
++ { echo "$as_me:$LINENO: checking for Xalan-C++$in_path" >&5
++echo $ECHO_N "checking for Xalan-C++$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_xalan_c+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$LIBXML_INCLUDE $LIBXSLT_INCLUDE $orig_CPPFLAGS"
+- LIBS="$LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
++ CPPFLAGS="$XALAN_INCLUDE $XERCES_INCLUDE $orig_CPPFLAGS"
++ LIBS="$XALAN_LIBS $XERCES_LIBS $ICU_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <libxslt/xslt.h>
++#include <xalanc/XalanTransformer/XalanTransformer.hpp>
+ int
+ main ()
+ {
+-xsltInit()
++xalanc::XalanTransformer::initialize();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_libxslt=yes
++ ncbi_cv_lib_xalan_c=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_libxslt=no
++ ncbi_cv_lib_xalan_c=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxslt" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_libxslt" >&6
+- if test "$ncbi_cv_lib_libxslt" = "no"; then
+- if test "${with_libxslt:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-libxslt explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-libxslt explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_xalan_c" >&5
++echo "${ECHO_T}$ncbi_cv_lib_xalan_c" >&6; }
++ if test $ncbi_cv_lib_xalan_c = yes; then
++ if test -f "$XALAN_LIBPATH/libxalan-c-static.a"; then
++ XALAN_STATIC_LIBS="-L$XALAN_LIBPATH -lxalan-c-static -lxalanMsg-static"
++ else
++ XALAN_STATIC_LIBS=$XALAN_LIBS
++ fi
++ else
++ if test "${with_xalan:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-xalan explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-xalan explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_libxslt" = "no"; then
+- LIBXSLT_PATH="No_LIBXSLT"
+- LIBXSLT_INCLUDE=
+- LIBXSLT_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}LIBXSLT"; WithPackagesSep=" "
+- LIBXSLT_INCLUDE="$LIBXML_INCLUDE $LIBXSLT_INCLUDE"
++if test "$with_xalan" != no; then
++ WithPackages="$WithPackages${WithPackagesSep}Xalan"; WithPackagesSep=" "
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBXSLT 1
++#define HAVE_XALAN 1
+ _ACEOF
+
++else
++ XALAN_INCLUDE=
++ XALAN_LIBS=
++ XALAN_STATIC_LIBS=
+ fi
+
++test -d SunWS_cache && rm -r SunWS_cache
+
+-
+-
+-# XXX - they might be in different directories in some setups
+-if test -f "${LIBXML_LIBPATH_}/libxslt-static.a"; then
+- LIBXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxslt-static"
++if test "$with_zorba" != no; then
++ if test "${with_zorba-yes}" != yes; then
++ ZORBA_PATH=$with_zorba
++ fi
++ if test -d "$ZORBA_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ ZORBA_PATH=$ncbi_fix_dir_tmp2
+ else
+- LIBXSLT_STATIC_LIBS=${LIBXSLT_LIBS}
++ case "$ZORBA_PATH" in
++ /*) ;;
++ * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+-
+-# Extract the first word of "xsltproc", so it can be a program name with args.
+-set dummy xsltproc; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_path_XSLTPROC+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
++ ;;
++ /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ vpath="$ZORBA_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
++ if test -d "$vpath/lib"; then
++ ZORBA_PATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ ZORBA_PATH=$ncbi_fix_dir_tmp2
+ else
+- case $XSLTPROC in
+- [\\/]* | ?:[\\/]*)
+- ac_cv_path_XSLTPROC="$XSLTPROC" # Let the user override the test with a path.
++ case "$ZORBA_PATH" in
++ /*) ;;
++ * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
+ ;;
+- *)
+- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-as_dummy="$LIBXSLT_PATH/bin:`dirname $LIBXML_LIBPATH_ 2>/dev/null`/bin:$PATH"
+-for as_dir in $as_dummy
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_path_XSLTPROC="$as_dir/$ac_word$ac_exec_ext"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
++ /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ elif test -d "$vpath"; then
++ : ${ZORBA_LIBPATH=$vpath}
++ ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
++ else
++ case "$ZORBA_LIBPATH" in
++ /*) ;;
++ * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+-done
+-done
+-
+- test -z "$ac_cv_path_XSLTPROC" && ac_cv_path_XSLTPROC=":"
+ ;;
++ /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
++ else
++ vpath="$ZORBA_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
++ if test -d "$vpath/lib"; then
++ ZORBA_PATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ ZORBA_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$ZORBA_PATH" in
++ /*) ;;
++ * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+-XSLTPROC=$ac_cv_path_XSLTPROC
+-
+-if test -n "$XSLTPROC"; then
+- echo "$as_me:$LINENO: result: $XSLTPROC" >&5
+-echo "${ECHO_T}$XSLTPROC" >&6
++ ;;
++ /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ elif test -d "$vpath"; then
++ ZORBA_LIBPATH=$vpath
++ ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
+ else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
++ case "$ZORBA_LIBPATH" in
++ /*) ;;
++ * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+-
+-
+-: ${LIBEXSLT_PATH=$LIBXSLT_PATH}
+-if test "$with_libexslt" != "no"; then
+- case "$with_libexslt" in
+- yes | "" ) ;;
+- * ) LIBEXSLT_PATH=$with_libexslt ;;
++ ;;
++ /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
+ esac
+- if test -d "$LIBEXSLT_PATH"; then
+- in_path=" in $LIBEXSLT_PATH"
+- if test -z "$LIBEXSLT_INCLUDE" -a -d "$LIBEXSLT_PATH/include"; then
+- LIBEXSLT_INCLUDE="-I$LIBEXSLT_PATH/include"
+ fi
+- if test -n "$LIBEXSLT_LIBPATH"; then
+- :
+- elif test -d "$LIBEXSLT_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
++ fi
++ ZORBA_CONFIG="$ZORBA_PATH/bin/zorba-config"
++ if test -x "$ZORBA_CONFIG"; then
++ ZORBA_PATH=`$ZORBA_CONFIG --prefix`
++ : ${ZORBA_INCLUDE=`$ZORBA_CONFIG --cppflags`}
++ fi
++ if test -d "$ZORBA_PATH"; then
++ in_path=" in $ZORBA_PATH"
++ : ${ZORBA_INCLUDE=-I$ZORBA_PATH/include}
++ : ${ZORBA_LIBPATH=$ZORBA_PATH/lib}
+ else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ in_path=''
+ fi
+- elif test -d "$LIBEXSLT_PATH/lib"; then
++ if test -x "$ZORBA_CONFIG"; then
++ ZORBA_LIBS=`$ZORBA_CONFIG --libs`
++ else
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $LIBEXSLT_PATH/lib; do
++ for x in $ZORBA_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
++ ZORBA_LIBPATH_="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $LIBEXSLT_PATH/lib; do
++ for x in $ZORBA_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
++ ZORBA_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- LIBEXSLT_LIBS="$LIBEXSLT_LIBPATH -lexslt "
+- else
+- LIBEXSLT_INCLUDE=""
+- LIBEXSLT_LIBS="-lexslt "
+- in_path=
++ ZORBA_LIBS="$ZORBA_LIBPATH_ -lzorba_simplestore"
+ fi
+- echo "$as_me:$LINENO: checking for libexslt$in_path" >&5
+-echo $ECHO_N "checking for libexslt$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_libexslt+set}" = set; then
++ { echo "$as_me:$LINENO: checking for Zorba$in_path" >&5
++echo $ECHO_N "checking for Zorba$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_zorba+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE $orig_CPPFLAGS"
+- LIBS="$LIBEXSLT_LIBS $LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
++ CPPFLAGS="$ZORBA_INCLUDE $orig_CPPFLAGS"
++ LIBS="$ZORBA_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <libexslt/exslt.h>
++#include <zorba/zorba.h>
+ int
+ main ()
+ {
+-exsltRegisterAll()
++zorba::Version v = zorba::Zorba::version();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_libexslt=yes
++ ncbi_cv_lib_zorba=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_libexslt=no
++ ncbi_cv_lib_zorba=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_libexslt" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_libexslt" >&6
+- if test "$ncbi_cv_lib_libexslt" = "no"; then
+- if test "${with_libexslt:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-libexslt explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-libexslt explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_zorba" >&5
++echo "${ECHO_T}$ncbi_cv_lib_zorba" >&6; }
++ if test $ncbi_cv_lib_zorba = yes; then
++ if test -x "$ZORBA_CONFIG"; then
++ ZORBA_STATIC_LIBS=`$ZORBA_CONFIG --static-libs`
++ elif test -f "$ZORBA_LIBPATH/libzorba_simplestore-static.a"; then
++ ZORBA_STATIC_LIBS="-L$ZORBA_LIBPATH -lzorba_simplestore-static $XERCES_STATIC_LIBS $ICU_STATIC_LIBS $LIBXSLT_STATIC_LIBS $LIBXML_STATIC_LIBS"
++ else
++ ZORBA_STATIC_LIBS=$ZORBA_LIBS
++ fi
++ else
++ if test "${with_zorba:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-zorba explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-zorba explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_libexslt" = "no"; then
+- LIBEXSLT_PATH="No_LIBEXSLT"
+- LIBEXSLT_INCLUDE=
+- LIBEXSLT_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}LIBEXSLT"; WithPackagesSep=" "
+- LIBEXSLT_INCLUDE="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE"
++if test "$with_zorba" != no; then
++ WithPackages="$WithPackages${WithPackagesSep}Zorba"; WithPackagesSep=" "
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBEXSLT 1
++#define HAVE_ZORBA 1
+ _ACEOF
+
+- fi
+-
+-
+-
+-
+-# XXX - they might be in different directories in some setups
+-if test -f "${LIBXML_LIBPATH_}/libexslt-static.a"; then
+- LIBEXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lexslt-static"
+ else
+- LIBEXSLT_STATIC_LIBS=${LIBEXSLT_LIBS}
++ ZORBA_INCLUDE=
++ ZORBA_LIBS=
++ ZORBA_STATIC_LIBS=
+ fi
+
+-: ${XERCES_PATH=$NCBI/xerces}
+-if test "$with_xerces" != no; then
+- if test "${with_xerces-yes}" != yes; then
+- XERCES_PATH=$with_xerces
+- fi
+- if test -d "$XERCES_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XERCES_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$XERCES_PATH" in
+- /*) ;;
+- * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
++### SQLite
++case "$with_sqlite3" in
++ yes | '' ) ;;
++ * ) SQLITE3_PATH=$with_sqlite3 ;;
+ esac
+- fi
+- vpath="$XERCES_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
+- if test -d "$vpath/lib"; then
+- XERCES_PATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++
++if test -d "$SQLITE3_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $SQLITE3_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+ case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
++ /.*) ncbi_fix_dir_tmp2=`cd $SQLITE3_PATH && $smart_pwd 2>/dev/null`
+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XERCES_PATH=$ncbi_fix_dir_tmp2
++ SQLITE3_PATH=$ncbi_fix_dir_tmp2
+ else
+- case "$XERCES_PATH" in
++ case "$SQLITE3_PATH" in
+ /*) ;;
+- * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
++ * ) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+ ;;
+- /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- elif test -d "$vpath"; then
+- : ${XERCES_LIBPATH=$vpath}
+- ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XERCES_LIBPATH=$ncbi_fix_dir_tmp2
+- else
+- case "$XERCES_LIBPATH" in
+- /*) ;;
+- * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
++ /*) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+- ;;
+- /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
+- else
+- vpath="$XERCES_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
+- if test -d "$vpath/lib"; then
+- XERCES_PATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XERCES_PATH=$ncbi_fix_dir_tmp2
++if test -d "$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib"; then
++ SQLITE3_LIBDIR=$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib
++elif test -d $SQLITE3_PATH/lib${bit64_sfx}; then
++ SQLITE3_LIBDIR=$SQLITE3_PATH/lib${bit64_sfx}
+ else
+- case "$XERCES_PATH" in
+- /*) ;;
+- * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
+- esac
++ SQLITE3_LIBDIR=$SQLITE3_PATH/lib
+ fi
+- ;;
+- /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- elif test -d "$vpath"; then
+- XERCES_LIBPATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XERCES_LIBPATH=$ncbi_fix_dir_tmp2
++ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $SQLITE3_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- case "$XERCES_LIBPATH" in
+- /*) ;;
+- * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $SQLITE3_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- ;;
+- /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
++if test "$with_sqlite3" != "no"; then
++ case "$with_sqlite3" in
++ yes | "" ) ;;
++ * ) SQLITE3_PATH=$with_sqlite3 ;;
+ esac
++ if test -d "$SQLITE3_PATH"; then
++ in_path=" in $SQLITE3_PATH"
++ if test -z "$SQLITE3_INCLUDE" -a -d "$SQLITE3_PATH/include"; then
++ SQLITE3_INCLUDE="-I$SQLITE3_PATH/include"
+ fi
+- fi
+- if test -d $XERCES_PATH; then
+- in_path=" in $XERCES_PATH"
+- : ${XERCES_INCLUDE=-I$XERCES_PATH/include}
+- : ${XERCES_LIBPATH=$XERCES_PATH/lib}
++ if test -n "$SQLITE3_LIBPATH"; then
++ :
++ elif test -d "$SQLITE3_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $SQLITE3_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- in_path=''
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $SQLITE3_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
++ elif test -d "$SQLITE3_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $XERCES_LIBPATH; do
++ for x in $SQLITE3_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- XERCES_LIBPATH_="${ncbi_rp_L_flags}"
++ SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $XERCES_LIBPATH; do
++ for x in $SQLITE3_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- XERCES_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- XERCES_LIBS="$XERCES_LIBPATH_ -lxerces-c"
+- echo "$as_me:$LINENO: checking for Xerces-C++$in_path" >&5
+-echo $ECHO_N "checking for Xerces-C++$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_xerces_c+set}" = set; then
++ fi
++ SQLITE3_LIBS="$SQLITE3_LIBPATH -lsqlite3 "
++ else
++ SQLITE3_INCLUDE=""
++ SQLITE3_LIBS="-lsqlite3 "
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for libsqlite3$in_path" >&5
++echo $ECHO_N "checking for libsqlite3$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_sqlite3+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$XERCES_INCLUDE $orig_CPPFLAGS"
+- LIBS="$XERCES_LIBS $ICU_LIBS $orig_LIBS"
++ CPPFLAGS=" $SQLITE3_INCLUDE $orig_CPPFLAGS"
++ LIBS="$SQLITE3_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <xercesc/dom/DOM.hpp>
++#include <sqlite3.h>
+ int
+ main ()
+ {
+-xercesc::DOMImplementation* impl
+- = xercesc::DOMImplementationRegistry::getDOMImplementation
+- (xercesc::XMLString::transcode("XML 1.0"));
++sqlite3_pcache_methods m;
++ int status = sqlite3_config(SQLITE_CONFIG_GETPCACHE, &m);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_xerces_c=yes
++ ncbi_cv_lib_sqlite3=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_xerces_c=no
++ ncbi_cv_lib_sqlite3=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_xerces_c" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_xerces_c" >&6
+- if test $ncbi_cv_lib_xerces_c = yes; then
+- if test -f "$XERCES_LIBPATH/libxerces-c-static.a"; then
+- XERCES_STATIC_LIBS="-L$XERCES_LIBPATH -lxerces-c-static $CURL_LIBS"
+- else
+- XERCES_STATIC_LIBS=$XERCES_LIBS
+- fi
+- else
+- if test "${with_xerces:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-xerces explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-xerces explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sqlite3" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sqlite3" >&6; }
++ if test "$ncbi_cv_lib_sqlite3" = "no"; then
++ if test "${with_sqlite3:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sqlite3 explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sqlite3 explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+-if test "$with_xerces" != no; then
+- WithPackages="$WithPackages${WithPackagesSep}Xerces"; WithPackagesSep=" "
++ if test "$with_sqlite3" = "no"; then
++ SQLITE3_PATH="No_SQLITE3"
++ SQLITE3_INCLUDE=
++ SQLITE3_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}SQLITE3"; WithPackagesSep=" "
++ SQLITE3_INCLUDE=" $SQLITE3_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_XERCES 1
++#define HAVE_LIBSQLITE3 1
+ _ACEOF
+
+-else
+- XERCES_INCLUDE=
+- XERCES_LIBS=
+- XERCES_STATIC_LIBS=
+ fi
+
+-: ${XALAN_PATH=$NCBI/xalan}
+-if test "$with_xalan" != no; then
+- if test "${with_xalan-yes}" != yes; then
+- XALAN_PATH=$with_xalan
++
++
++if test -n "$SQLITE3_LIBS"; then
++ CPPFLAGS="$SQLITE3_INCLUDE $orig_CPPFLAGS"
++ if test "${ac_cv_header_sqlite3async_h+set}" = set; then
++ { echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
++echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6; }
++if test "${ac_cv_header_sqlite3async_h+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
+ fi
+- if test -d "$XALAN_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XALAN_PATH=$ncbi_fix_dir_tmp2
++{ echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
++echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6; }
+ else
+- case "$XALAN_PATH" in
+- /*) ;;
+- * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
++ # Is the header compilable?
++{ echo "$as_me:$LINENO: checking sqlite3async.h usability" >&5
++echo $ECHO_N "checking sqlite3async.h usability... $ECHO_C" >&6; }
++cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++$ac_includes_default
++#include <sqlite3async.h>
++_ACEOF
++rm -f conftest.$ac_objext
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
+ esac
+- fi
+- vpath="$XALAN_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
+- if test -d "$vpath/lib"; then
+- XALAN_PATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XALAN_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$XALAN_PATH" in
+- /*) ;;
+- * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } &&
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
+ esac
+- fi
+- ;;
+- /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest.$ac_objext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
+ esac
+- elif test -d "$vpath"; then
+- : ${XALAN_LIBPATH=$vpath}
+- ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XALAN_LIBPATH=$ncbi_fix_dir_tmp2
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ac_header_compiler=yes
+ else
+- case "$XALAN_LIBPATH" in
+- /*) ;;
+- * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_header_compiler=no
+ fi
+- ;;
+- /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
++
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
++echo "${ECHO_T}$ac_header_compiler" >&6; }
++
++# Is the header present?
++{ echo "$as_me:$LINENO: checking sqlite3async.h presence" >&5
++echo $ECHO_N "checking sqlite3async.h presence... $ECHO_C" >&6; }
++cat >conftest.$ac_ext <<_ACEOF
++/* confdefs.h. */
++_ACEOF
++cat confdefs.h >>conftest.$ac_ext
++cat >>conftest.$ac_ext <<_ACEOF
++/* end confdefs.h. */
++#include <sqlite3async.h>
++_ACEOF
++if { (ac_try="$ac_cpp conftest.$ac_ext"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
+ esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
++ ac_status=$?
++ grep -v '^ *+' conftest.er1 >conftest.err
++ rm -f conftest.er1
++ cat conftest.err >&5
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); } >/dev/null; then
++ if test -s conftest.err; then
++ ac_cpp_err=$ac_cxx_preproc_warn_flag
++ ac_cpp_err=$ac_cpp_err$ac_cxx_werror_flag
+ else
+- vpath="$XALAN_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
+- if test -d "$vpath/lib"; then
+- XALAN_PATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XALAN_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$XALAN_PATH" in
+- /*) ;;
+- * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
+- esac
++ ac_cpp_err=
+ fi
+- ;;
+- /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- elif test -d "$vpath"; then
+- XALAN_LIBPATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- XALAN_LIBPATH=$ncbi_fix_dir_tmp2
+ else
+- case "$XALAN_LIBPATH" in
+- /*) ;;
+- * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
++ ac_cpp_err=yes
+ fi
+- if test -d $XALAN_PATH; then
+- in_path=" in $XALAN_PATH"
+- : ${XALAN_INCLUDE=-I$XALAN_PATH/include}
+- : ${XALAN_LIBPATH=$XALAN_PATH/lib}
++if test -z "$ac_cpp_err"; then
++ ac_header_preproc=yes
+ else
+- in_path=''
++ echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_header_preproc=no
+ fi
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $XALAN_LIBPATH; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- XALAN_LIBPATH_="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $XALAN_LIBPATH; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- XALAN_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++
++rm -f conftest.err conftest.$ac_ext
++{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
++echo "${ECHO_T}$ac_header_preproc" >&6; }
++
++# So? What about this header?
++case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
++ yes:no: )
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&5
++echo "$as_me: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the compiler's result" >&5
++echo "$as_me: WARNING: sqlite3async.h: proceeding with the compiler's result" >&2;}
++ ac_header_preproc=yes
++ ;;
++ no:yes:* )
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: present but cannot be compiled" >&5
++echo "$as_me: WARNING: sqlite3async.h: present but cannot be compiled" >&2;}
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&5
++echo "$as_me: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&2;}
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: see the Autoconf documentation" >&5
++echo "$as_me: WARNING: sqlite3async.h: see the Autoconf documentation" >&2;}
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&5
++echo "$as_me: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&2;}
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&5
++echo "$as_me: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&2;}
++ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&5
++echo "$as_me: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&2;}
++ ( cat <<\_ASBOX
++## ---------------------------------------- ##
++## Report this to cpp-core@ncbi.nlm.nih.gov ##
++## ---------------------------------------- ##
++_ASBOX
++ ) | sed "s/^/$as_me: WARNING: /" >&2
++ ;;
++esac
++{ echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
++echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6; }
++if test "${ac_cv_header_sqlite3async_h+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ ac_cv_header_sqlite3async_h=$ac_header_preproc
+ fi
+- XALAN_LIBS="$XALAN_LIBPATH_ -lxalan-c -lxalanMsg"
+- echo "$as_me:$LINENO: checking for Xalan-C++$in_path" >&5
+-echo $ECHO_N "checking for Xalan-C++$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_xalan_c+set}" = set; then
++{ echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
++echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6; }
++
++fi
++if test $ac_cv_header_sqlite3async_h = yes; then
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_SQLITE3ASYNC_H 1
++_ACEOF
++
++ WithPackages="$WithPackages${WithPackagesSep}SQLITE3ASYNC"; WithPackagesSep=" "
++fi
++
++
++ LIBS="$SQLITE3_LIBS $orig_LIBS"
++
++for ac_func in sqlite3_unlock_notify
++do
++as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
++{ echo "$as_me:$LINENO: checking for $ac_func" >&5
++echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
++if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$XALAN_INCLUDE $XERCES_INCLUDE $orig_CPPFLAGS"
+- LIBS="$XALAN_LIBS $XERCES_LIBS $ICU_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <xalanc/XalanTransformer/XalanTransformer.hpp>
++/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
++ For example, HP-UX 11i <limits.h> declares gettimeofday. */
++#define $ac_func innocuous_$ac_func
++
++/* System header to define __stub macros and hopefully few prototypes,
++ which can conflict with char $ac_func (); below.
++ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
++ <limits.h> exists even on freestanding compilers. */
++
++#ifdef __STDC__
++# include <limits.h>
++#else
++# include <assert.h>
++#endif
++
++#undef $ac_func
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char $ac_func ();
++/* The GNU C library defines this for functions which it implements
++ to always fail with ENOSYS. Some functions are actually named
++ something starting with __ and the normal name is an alias. */
++#if defined __stub_$ac_func || defined __stub___$ac_func
++choke me
++#endif
++
+ int
+ main ()
+ {
+-xalanc::XalanTransformer::initialize();
++return $ac_func ();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_xalan_c=yes
++ eval "$as_ac_var=yes"
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_xalan_c=no
++ eval "$as_ac_var=no"
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_xalan_c" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_xalan_c" >&6
+- if test $ncbi_cv_lib_xalan_c = yes; then
+- if test -f "$XALAN_LIBPATH/libxalan-c-static.a"; then
+- XALAN_STATIC_LIBS="-L$XALAN_LIBPATH -lxalan-c-static -lxalanMsg-static"
+- else
+- XALAN_STATIC_LIBS=$XALAN_LIBS
+- fi
+- else
+- if test "${with_xalan:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-xalan explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-xalan explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+-fi
+-if test "$with_xalan" != no; then
+- WithPackages="$WithPackages${WithPackagesSep}Xalan"; WithPackagesSep=" "
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_XALAN 1
++ac_res=`eval echo '${'$as_ac_var'}'`
++ { echo "$as_me:$LINENO: result: $ac_res" >&5
++echo "${ECHO_T}$ac_res" >&6; }
++if test `eval echo '${'$as_ac_var'}'` = yes; then
++ cat >>confdefs.h <<_ACEOF
++#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
+ _ACEOF
+
+-else
+- XALAN_INCLUDE=
+- XALAN_LIBS=
+- XALAN_STATIC_LIBS=
+ fi
++done
+
+-test -d SunWS_cache && rm -r SunWS_cache
+-
+-: ${ZORBA_PATH=$NCBI/zorba}
+-if test "$with_zorba" != no; then
+- if test "${with_zorba-yes}" != yes; then
+- ZORBA_PATH=$with_zorba
+- fi
+- if test -d "$ZORBA_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- ZORBA_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$ZORBA_PATH" in
+- /*) ;;
+- * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- vpath="$ZORBA_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
+- if test -d "$vpath/lib"; then
+- ZORBA_PATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- ZORBA_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$ZORBA_PATH" in
+- /*) ;;
+- * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- elif test -d "$vpath"; then
+- : ${ZORBA_LIBPATH=$vpath}
+- ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
+- else
+- case "$ZORBA_LIBPATH" in
+- /*) ;;
+- * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
+- else
+- vpath="$ZORBA_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
+- if test -d "$vpath/lib"; then
+- ZORBA_PATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- ZORBA_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$ZORBA_PATH" in
+- /*) ;;
+- * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+ fi
+- ;;
+- /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- elif test -d "$vpath"; then
+- ZORBA_LIBPATH=$vpath
+- ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
++if test -n "$SQLITE3_LIBS" -a -f "$SQLITE3_LIBDIR/libsqlite3-static.a"; then
++ SQLITE3_STATIC_LIBS="-L$SQLITE3_LIBDIR -lsqlite3-static"
+ else
+- case "$ZORBA_LIBPATH" in
+- /*) ;;
+- * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
+- esac
++ SQLITE3_STATIC_LIBS=$SQLITE3_LIBS
+ fi
+- ;;
+- /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
++
++
++### OEChem
++# somewhat kludgish, as we now wanto to add in oeiupac and oedepict,
++# which depend on oechem....
++if test "$with_oechem" != "no"; then
++ case "$with_oechem" in
++ yes | "" ) ;;
++ * ) OECHEM_PATH=$with_oechem ;;
+ esac
++ if test -d "$OECHEM_PATH"; then
++ in_path=" in $OECHEM_PATH"
++ if test -z "$OECHEM_INCLUDE" -a -d "$OECHEM_PATH/include"; then
++ OECHEM_INCLUDE="-I$OECHEM_PATH/include"
+ fi
+- fi
+- ZORBA_CONFIG="$ZORBA_PATH/bin/zorba-config"
+- if test -x "$ZORBA_CONFIG"; then
+- ZORBA_PATH=`$ZORBA_CONFIG --prefix`
+- : ${ZORBA_INCLUDE=`$ZORBA_CONFIG --cppflags`}
+- fi
+- if test -d $ZORBA_PATH; then
+- in_path=" in $ZORBA_PATH"
+- : ${ZORBA_INCLUDE=-I$ZORBA_PATH/include}
+- : ${ZORBA_LIBPATH=$ZORBA_PATH/lib}
++ if test -n "$OECHEM_LIBPATH"; then
++ :
++ elif test -d "$OECHEM_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $OECHEM_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ OECHEM_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- in_path=''
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $OECHEM_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- if test -x "$ZORBA_CONFIG"; then
+- ZORBA_LIBS=`$ZORBA_CONFIG --libs`
+- else
++ elif test -d "$OECHEM_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $ZORBA_LIBPATH; do
++ for x in $OECHEM_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- ZORBA_LIBPATH_="${ncbi_rp_L_flags}"
++ OECHEM_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $ZORBA_LIBPATH; do
++ for x in $OECHEM_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- ZORBA_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- ZORBA_LIBS="$ZORBA_LIBPATH_ -lzorba_simplestore"
+ fi
+- echo "$as_me:$LINENO: checking for Zorba$in_path" >&5
+-echo $ECHO_N "checking for Zorba$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_zorba+set}" = set; then
++ OECHEM_LIBS="$OECHEM_LIBPATH -loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
++ else
++ OECHEM_INCLUDE=""
++ OECHEM_LIBS="-loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for liboechem$in_path" >&5
++echo $ECHO_N "checking for liboechem$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_oechem+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$ZORBA_INCLUDE $orig_CPPFLAGS"
+- LIBS="$ZORBA_LIBS $orig_LIBS"
++ CPPFLAGS=" $OECHEM_INCLUDE $orig_CPPFLAGS"
++ LIBS="$OECHEM_LIBS $NETWORK_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <zorba/zorba.h>
++#include <oechem.h>
+ int
+ main ()
+ {
+-zorba::Version v = zorba::Zorba::version();
++OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_zorba=yes
++ ncbi_cv_lib_oechem=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_zorba=no
++ ncbi_cv_lib_oechem=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_zorba" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_zorba" >&6
+- if test $ncbi_cv_lib_zorba = yes; then
+- if test -x "$ZORBA_CONFIG"; then
+- ZORBA_STATIC_LIBS=`$ZORBA_CONFIG --static-libs`
+- elif test -f "$ZORBA_LIBPATH/libzorba_simplestore-static.a"; then
+- ZORBA_STATIC_LIBS="-L$ZORBA_LIBPATH -lzorba_simplestore-static $XERCES_STATIC_LIBS $ICU_STATIC_LIBS $LIBXSLT_STATIC_LIBS $LIBXML_STATIC_LIBS"
+- else
+- ZORBA_STATIC_LIBS=$ZORBA_LIBS
+- fi
+- else
+- if test "${with_zorba:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-zorba explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-zorba explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_oechem" >&5
++echo "${ECHO_T}$ncbi_cv_lib_oechem" >&6; }
++ if test "$ncbi_cv_lib_oechem" = "no"; then
++ if test "${with_oechem:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-oechem explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-oechem explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+-if test "$with_zorba" != no; then
+- WithPackages="$WithPackages${WithPackagesSep}Zorba"; WithPackagesSep=" "
++ if test "$with_oechem" = "no"; then
++ OECHEM_PATH="No_OECHEM"
++ OECHEM_INCLUDE=
++ OECHEM_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}OECHEM"; WithPackagesSep=" "
++ OECHEM_INCLUDE=" $OECHEM_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_ZORBA 1
++#define HAVE_LIBOECHEM 1
+ _ACEOF
+
+-else
+- ZORBA_INCLUDE=
+- ZORBA_LIBS=
+- ZORBA_STATIC_LIBS=
+ fi
+
+-### SQLite
+-case "$with_sqlite3" in
+- yes | '' ) : ${SQLITE3_PATH=$NCBI/sqlite3} ;;
+- * ) SQLITE3_PATH=$with_sqlite3 ;;
+-esac
+
+-if test -d "$SQLITE3_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $SQLITE3_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $SQLITE3_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- SQLITE3_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$SQLITE3_PATH" in
+- /*) ;;
+- * ) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
+- esac
++
++if test -n "$OECHEM_LIBS"; then
++ OECHEM_LIBS=`echo $OECHEM_LIBS | sed -e 's/-loechem \(.*-loechem .*\)/\1/'`
+ fi
+- ;;
+- /*) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
++test -d SunWS_cache && rm -r SunWS_cache
++
++
++### Sun/Univa Grid Engine
++case "$with_sge" in
++ yes | "" ) ;;
++ * ) SGE_PATH=$with_sge ;;
+ esac
++if test -d "$SGE_PATH" -a -z "$SGE_LIBPATH"; then
++ case "$host:$NCBI_PLATFORM_BITS" in
++ i?86-*-darwin* ) SGE_PLATFORMS='darwin-x86' ;;
++ i?86-*-linux* ) SGE_PLATFORMS='lx24-x86 lx-x86' ;;
++ i?86-*-solaris*:32 ) SGE_PLATFORMS='sol-x86' ;;
++ i?86-*-solaris*:64 ) SGE_PLATFORMS='sol-amd64' ;;
++ powerpc-*-darwin* ) SGE_PLATFORMS='darwin-ppc' ;;
++ sparc-*-solaris*:32 ) SGE_PLATFORMS='sol-sparc' ;;
++ sparc-*-solaris*:64 ) SGE_PLATFORMS='sol-sparc64' ;;
++ x86_64-*-linux* ) SGE_PLATFORMS='lx24-amd64 lx-amd64' ;;
++ esac
++ for x in $SGE_PLATFORMS; do
++ if test -d "$SGE_PATH/lib/$x"; then
++ SGE_LIBPATH="$SGE_PATH/lib/$x"
++ break
+ fi
+-if test -d "$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib"; then
+- SQLITE3_LIBDIR=$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib
+-elif test -d $SQLITE3_PATH/lib${bit64_sfx}; then
+- SQLITE3_LIBDIR=$SQLITE3_PATH/lib${bit64_sfx}
+-else
+- SQLITE3_LIBDIR=$SQLITE3_PATH/lib
+-fi
++ done
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SQLITE3_LIBDIR; do
++ for x in $SGE_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
++ SGE_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SQLITE3_LIBDIR; do
++ for x in $SGE_LIBPATH; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+-if test "$with_sqlite3" != "no"; then
+- case "$with_sqlite3" in
++fi
++if test "$with_sge" != "no"; then
++ case "$with_sge" in
+ yes | "" ) ;;
+- * ) SQLITE3_PATH=$with_sqlite3 ;;
++ * ) SGE_PATH=$with_sge ;;
+ esac
+- if test -d "$SQLITE3_PATH"; then
+- in_path=" in $SQLITE3_PATH"
+- if test -z "$SQLITE3_INCLUDE" -a -d "$SQLITE3_PATH/include"; then
+- SQLITE3_INCLUDE="-I$SQLITE3_PATH/include"
++ if test -d "$SGE_PATH"; then
++ in_path=" in $SGE_PATH"
++ if test -z "$SGE_INCLUDE" -a -d "$SGE_PATH/include"; then
++ SGE_INCLUDE="-I$SGE_PATH/include"
+ fi
+- if test -n "$SQLITE3_LIBPATH"; then
++ if test -n "$SGE_LIBPATH"; then
+ :
+- elif test -d "$SQLITE3_PATH/lib${bit64_sfx}"; then
++ elif test -d "$SGE_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SQLITE3_PATH/lib${bit64_sfx}; do
++ for x in $SGE_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
++ SGE_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SQLITE3_PATH/lib${bit64_sfx}; do
++ for x in $SGE_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$SQLITE3_PATH/lib"; then
++ elif test -d "$SGE_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SQLITE3_PATH/lib; do
++ for x in $SGE_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
++ SGE_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SQLITE3_PATH/lib; do
++ for x in $SGE_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- SQLITE3_LIBS="$SQLITE3_LIBPATH -lsqlite3 "
++ SGE_LIBS="$SGE_LIBPATH -ldrmaa "
+ else
+- SQLITE3_INCLUDE=""
+- SQLITE3_LIBS="-lsqlite3 "
++ SGE_INCLUDE=""
++ SGE_LIBS="-ldrmaa "
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libsqlite3$in_path" >&5
+-echo $ECHO_N "checking for libsqlite3$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_sqlite3+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libdrmaa$in_path" >&5
++echo $ECHO_N "checking for libdrmaa$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_sge+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $SQLITE3_INCLUDE $orig_CPPFLAGS"
+- LIBS="$SQLITE3_LIBS $orig_LIBS"
++ CPPFLAGS=" $SGE_INCLUDE $orig_CPPFLAGS"
++ LIBS="$SGE_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <sqlite3.h>
++#include <sys/types.h>
++ #include <drmaa.h>
+ int
+ main ()
+ {
+-sqlite3_pcache_methods m;
+- int status = sqlite3_config(SQLITE_CONFIG_GETPCACHE, &m);
++char buf[1024]; drmaa_init("SGE", buf, sizeof(buf));
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_lib_sqlite3=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_sqlite3=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sqlite3" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sqlite3" >&6
+- if test "$ncbi_cv_lib_sqlite3" = "no"; then
+- if test "${with_sqlite3:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sqlite3 explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sqlite3 explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- fi
+- if test "$with_sqlite3" = "no"; then
+- SQLITE3_PATH="No_SQLITE3"
+- SQLITE3_INCLUDE=
+- SQLITE3_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}SQLITE3"; WithPackagesSep=" "
+- SQLITE3_INCLUDE=" $SQLITE3_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBSQLITE3 1
+-_ACEOF
+-
+- fi
+-
+-
+-
+-if test -n "$SQLITE3_LIBS"; then
+- CPPFLAGS="$SQLITE3_INCLUDE $orig_CPPFLAGS"
+- if test "${ac_cv_header_sqlite3async_h+set}" = set; then
+- echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
+-echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6
+-if test "${ac_cv_header_sqlite3async_h+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-fi
+-echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
+-echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6
+-else
+- # Is the header compilable?
+-echo "$as_me:$LINENO: checking sqlite3async.h usability" >&5
+-echo $ECHO_N "checking sqlite3async.h usability... $ECHO_C" >&6
+-cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-$ac_includes_default
+-#include <sqlite3async.h>
+-_ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ac_header_compiler=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ac_header_compiler=no
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+-echo "${ECHO_T}$ac_header_compiler" >&6
+-
+-# Is the header present?
+-echo "$as_me:$LINENO: checking sqlite3async.h presence" >&5
+-echo $ECHO_N "checking sqlite3async.h presence... $ECHO_C" >&6
+-cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <sqlite3async.h>
+-_ACEOF
+-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
+- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } >/dev/null; then
+- if test -s conftest.err; then
+- ac_cpp_err=$ac_cxx_preproc_warn_flag
+- ac_cpp_err=$ac_cpp_err$ac_cxx_werror_flag
+- else
+- ac_cpp_err=
+- fi
+-else
+- ac_cpp_err=yes
+-fi
+-if test -z "$ac_cpp_err"; then
+- ac_header_preproc=yes
++ (exit $ac_status); }; } &&
++ { ac_try='test -s conftest$ac_exeext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
++ (exit $ac_status); }; }; then
++ ncbi_cv_lib_sge=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+- ac_header_preproc=no
++ ncbi_cv_lib_sge=no
+ fi
+-rm -f conftest.err conftest.$ac_ext
+-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+-echo "${ECHO_T}$ac_header_preproc" >&6
+
+-# So? What about this header?
+-case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
+- yes:no: )
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&5
+-echo "$as_me: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the compiler's result" >&5
+-echo "$as_me: WARNING: sqlite3async.h: proceeding with the compiler's result" >&2;}
+- ac_header_preproc=yes
+- ;;
+- no:yes:* )
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: present but cannot be compiled" >&5
+-echo "$as_me: WARNING: sqlite3async.h: present but cannot be compiled" >&2;}
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&5
+-echo "$as_me: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&2;}
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: see the Autoconf documentation" >&5
+-echo "$as_me: WARNING: sqlite3async.h: see the Autoconf documentation" >&2;}
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&5
+-echo "$as_me: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&2;}
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&5
+-echo "$as_me: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&2;}
+- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&5
+-echo "$as_me: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&2;}
+- (
+- cat <<\_ASBOX
+-## ---------------------------------------- ##
+-## Report this to cpp-core@ncbi.nlm.nih.gov ##
+-## ---------------------------------------- ##
+-_ASBOX
+- ) |
+- sed "s/^/$as_me: WARNING: /" >&2
+- ;;
+-esac
+-echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
+-echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6
+-if test "${ac_cv_header_sqlite3async_h+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- ac_cv_header_sqlite3async_h=$ac_header_preproc
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
+-echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6
+-
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sge" >&5
++echo "${ECHO_T}$ncbi_cv_lib_sge" >&6; }
++ if test "$ncbi_cv_lib_sge" = "no"; then
++ if test "${with_sge:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-sge explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-sge explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
+ fi
+-if test $ac_cv_header_sqlite3async_h = yes; then
++ fi
++ fi
++ if test "$with_sge" = "no"; then
++ SGE_PATH="No_SGE"
++ SGE_INCLUDE=
++ SGE_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}SGE"; WithPackagesSep=" "
++ SGE_INCLUDE=" $SGE_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_SQLITE3ASYNC_H 1
++#define HAVE_LIBSGE 1
+ _ACEOF
+
+- WithPackages="$WithPackages${WithPackagesSep}SQLITE3ASYNC"; WithPackagesSep=" "
+ fi
+
+
+- LIBS="$SQLITE3_LIBS $orig_LIBS"
+
+-for ac_func in sqlite3_unlock_notify
+-do
+-as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
+-echo "$as_me:$LINENO: checking for $ac_func" >&5
+-echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
+-if eval "test \"\${$as_ac_var+set}\" = set"; then
++
++
++### muParser
++case "$with_muparser" in
++ yes | '' ) ;;
++ * ) MUPARSER_PATH=$with_muparser ;;
++esac
++
++if test -d "$MUPARSER_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $MUPARSER_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $MUPARSER_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ MUPARSER_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$MUPARSER_PATH" in
++ /*) ;;
++ * ) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++fi
++if test -d "$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
++ MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
++elif test -d "$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
++ MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
++fi
++
++if test "$with_muparser" != "no"; then
++ case "$with_muparser" in
++ yes | "" ) ;;
++ * ) MUPARSER_PATH=$with_muparser ;;
++ esac
++ if test -d "$MUPARSER_PATH"; then
++ in_path=" in $MUPARSER_PATH"
++ if test -z "$MUPARSER_INCLUDE" -a -d "$MUPARSER_PATH/include"; then
++ MUPARSER_INCLUDE="-I$MUPARSER_PATH/include"
++ fi
++ if test -n "$MUPARSER_LIBPATH"; then
++ :
++ elif test -d "$MUPARSER_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $MUPARSER_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $MUPARSER_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ elif test -d "$MUPARSER_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $MUPARSER_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $MUPARSER_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ fi
++ MUPARSER_LIBS="$MUPARSER_LIBPATH -lmuparser "
++ else
++ MUPARSER_INCLUDE=""
++ MUPARSER_LIBS="-lmuparser "
++ in_path=
++ fi
++ { echo "$as_me:$LINENO: checking for libmuparser$in_path" >&5
++echo $ECHO_N "checking for libmuparser$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_muparser+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
++ CPPFLAGS=" $MUPARSER_INCLUDE $orig_CPPFLAGS"
++ LIBS="$MUPARSER_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
+- For example, HP-UX 11i <limits.h> declares gettimeofday. */
+-#define $ac_func innocuous_$ac_func
+-
+-/* System header to define __stub macros and hopefully few prototypes,
+- which can conflict with char $ac_func (); below.
+- Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+- <limits.h> exists even on freestanding compilers. */
+-
+-#ifdef __STDC__
+-# include <limits.h>
+-#else
+-# include <assert.h>
+-#endif
+-
+-#undef $ac_func
+-
+-/* Override any gcc2 internal prototype to avoid an error. */
+-#ifdef __cplusplus
+-extern "C"
+-{
+-#endif
+-/* We use char because int might match the return type of a gcc2
+- builtin and then its argument prototype would still apply. */
+-char $ac_func ();
+-/* The GNU C library defines this for functions which it implements
+- to always fail with ENOSYS. Some functions are actually named
+- something starting with __ and the normal name is an alias. */
+-#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
+-choke me
+-#else
+-char (*f) () = $ac_func;
+-#endif
+-#ifdef __cplusplus
+-}
+-#endif
+-
++#include <muParser.h>
+ int
+ main ()
+ {
+-return f != $ac_func;
++mu::Parser parser;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- eval "$as_ac_var=yes"
++ ncbi_cv_lib_muparser=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-eval "$as_ac_var=no"
++ ncbi_cv_lib_muparser=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
+-echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
+-if test `eval echo '${'$as_ac_var'}'` = yes; then
+- cat >>confdefs.h <<_ACEOF
+-#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_muparser" >&5
++echo "${ECHO_T}$ncbi_cv_lib_muparser" >&6; }
++ if test "$ncbi_cv_lib_muparser" = "no"; then
++ if test "${with_muparser:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-muparser explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-muparser explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ fi
++ fi
++ if test "$with_muparser" = "no"; then
++ MUPARSER_PATH="No_MUPARSER"
++ MUPARSER_INCLUDE=
++ MUPARSER_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}MUPARSER"; WithPackagesSep=" "
++ MUPARSER_INCLUDE=" $MUPARSER_INCLUDE"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBMUPARSER 1
+ _ACEOF
+
+ fi
+-done
+
++
++
++
++
++### hdf5
++case "$with_hdf5" in
++ yes | '' ) ;;
++ * ) HDF5_PATH=$with_hdf5 ;;
++esac
++
++if test -d "$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"; then
++ HDF5_PATH=$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}
++elif test -d "$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}"; then
++ HDF5_PATH=$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}
+ fi
+-if test -n "$SQLITE3_LIBS" -a -f "$SQLITE3_LIBDIR/libsqlite3-static.a"; then
+- SQLITE3_STATIC_LIBS="-L$SQLITE3_LIBDIR -lsqlite3-static"
++if test -d "$HDF5_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $HDF5_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $HDF5_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ HDF5_PATH=$ncbi_fix_dir_tmp2
+ else
+- SQLITE3_STATIC_LIBS=$SQLITE3_LIBS
++ case "$HDF5_PATH" in
++ /*) ;;
++ * ) HDF5_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) HDF5_PATH=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+
+-
+-### OEChem
+-# somewhat kludgish, as we now wanto to add in oeiupac and oedepict,
+-# which depend on oechem....
+-: ${OECHEM_PATH=$NCBI/oechem}
+-if test "$with_oechem" != "no"; then
+- case "$with_oechem" in
++if test "$with_hdf5" != "no"; then
++ case "$with_hdf5" in
+ yes | "" ) ;;
+- * ) OECHEM_PATH=$with_oechem ;;
++ * ) HDF5_PATH=$with_hdf5 ;;
+ esac
+- if test -d "$OECHEM_PATH"; then
+- in_path=" in $OECHEM_PATH"
+- if test -z "$OECHEM_INCLUDE" -a -d "$OECHEM_PATH/include"; then
+- OECHEM_INCLUDE="-I$OECHEM_PATH/include"
++ if test -d "$HDF5_PATH"; then
++ in_path=" in $HDF5_PATH"
++ if test -z "$HDF5_INCLUDE" -a -d "$HDF5_PATH/include"; then
++ HDF5_INCLUDE="-I$HDF5_PATH/include"
+ fi
+- if test -n "$OECHEM_LIBPATH"; then
++ if test -n "$HDF5_LIBPATH"; then
+ :
+- elif test -d "$OECHEM_PATH/lib${bit64_sfx}"; then
++ elif test -d "$HDF5_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $OECHEM_PATH/lib${bit64_sfx}; do
++ for x in $HDF5_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- OECHEM_LIBPATH="${ncbi_rp_L_flags}"
++ HDF5_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $OECHEM_PATH/lib${bit64_sfx}; do
++ for x in $HDF5_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$OECHEM_PATH/lib"; then
++ elif test -d "$HDF5_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $OECHEM_PATH/lib; do
++ for x in $HDF5_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- OECHEM_LIBPATH="${ncbi_rp_L_flags}"
++ HDF5_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $OECHEM_PATH/lib; do
++ for x in $HDF5_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- OECHEM_LIBS="$OECHEM_LIBPATH -loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
++ HDF5_LIBS="$HDF5_LIBPATH -lhdf5_cpp -lhdf5"
+ else
+- OECHEM_INCLUDE=""
+- OECHEM_LIBS="-loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
++ HDF5_INCLUDE=""
++ HDF5_LIBS="-lhdf5_cpp -lhdf5"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for liboechem$in_path" >&5
+-echo $ECHO_N "checking for liboechem$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_oechem+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libhdf5_cpp$in_path" >&5
++echo $ECHO_N "checking for libhdf5_cpp$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_hdf5+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $OECHEM_INCLUDE $orig_CPPFLAGS"
+- LIBS="$OECHEM_LIBS $NETWORK_LIBS $orig_LIBS"
++ CPPFLAGS=" $HDF5_INCLUDE $orig_CPPFLAGS"
++ LIBS="$HDF5_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <oechem.h>
++#include <H5Cpp.h>
+ int
+ main ()
+ {
+-OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive();
++H5::H5Library::open();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_oechem=yes
++ ncbi_cv_lib_hdf5=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_oechem=no
++ ncbi_cv_lib_hdf5=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_oechem" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_oechem" >&6
+- if test "$ncbi_cv_lib_oechem" = "no"; then
+- if test "${with_oechem:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-oechem explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-oechem explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_hdf5" >&5
++echo "${ECHO_T}$ncbi_cv_lib_hdf5" >&6; }
++ if test "$ncbi_cv_lib_hdf5" = "no"; then
++ if test "${with_hdf5:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-hdf5 explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-hdf5 explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_oechem" = "no"; then
+- OECHEM_PATH="No_OECHEM"
+- OECHEM_INCLUDE=
+- OECHEM_LIBS=
++ if test "$with_hdf5" = "no"; then
++ HDF5_PATH="No_HDF5"
++ HDF5_INCLUDE=
++ HDF5_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}OECHEM"; WithPackagesSep=" "
+- OECHEM_INCLUDE=" $OECHEM_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}HDF5"; WithPackagesSep=" "
++ HDF5_INCLUDE=" $HDF5_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBOECHEM 1
++#define HAVE_LIBHDF5 1
+ _ACEOF
+
+ fi
+
+
+
+-if test -n "$OECHEM_LIBS"; then
+- OECHEM_LIBS=`echo $OECHEM_LIBS | sed -e 's/-loechem \(.*-loechem .*\)/\1/'`
+-fi
+-test -d SunWS_cache && rm -r SunWS_cache
+
+
+-### Sun/Univa Grid Engine
+-case "$with_sge" in
+- yes | "" ) ;;
+- * ) SGE_PATH=$with_sge ;;
+-esac
+-if test -d "$SGE_PATH" -a -z "$SGE_LIBPATH"; then
+- case "$host:$NCBI_PLATFORM_BITS" in
+- i?86-*-darwin* ) SGE_PLATFORMS='darwin-x86' ;;
+- i?86-*-linux* ) SGE_PLATFORMS='lx24-x86 lx-x86' ;;
+- i?86-*-solaris*:32 ) SGE_PLATFORMS='sol-x86' ;;
+- i?86-*-solaris*:64 ) SGE_PLATFORMS='sol-amd64' ;;
+- powerpc-*-darwin* ) SGE_PLATFORMS='darwin-ppc' ;;
+- sparc-*-solaris*:32 ) SGE_PLATFORMS='sol-sparc' ;;
+- sparc-*-solaris*:64 ) SGE_PLATFORMS='sol-sparc64' ;;
+- x86_64-*-linux* ) SGE_PLATFORMS='lx24-amd64 lx-amd64' ;;
+- esac
+- for x in $SGE_PLATFORMS; do
+- if test -d "$SGE_PATH/lib/$x"; then
+- SGE_LIBPATH="$SGE_PATH/lib/$x"
+- break
+- fi
+- done
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SGE_LIBPATH; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- SGE_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SGE_LIBPATH; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+-fi
+-if test "$with_sge" != "no"; then
+- case "$with_sge" in
++### Image libraries
++# : ${JPEG_PATH=/usr/sfw}
++# Grr... jpeglib.h isn't especially well-behaved.
++if test "$with_jpeg" != "no"; then
++ case "$with_jpeg" in
+ yes | "" ) ;;
+- * ) SGE_PATH=$with_sge ;;
++ * ) JPEG_PATH=$with_jpeg ;;
+ esac
+- if test -d "$SGE_PATH"; then
+- in_path=" in $SGE_PATH"
+- if test -z "$SGE_INCLUDE" -a -d "$SGE_PATH/include"; then
+- SGE_INCLUDE="-I$SGE_PATH/include"
++ if test -d "$JPEG_PATH"; then
++ in_path=" in $JPEG_PATH"
++ if test -z "$JPEG_INCLUDE" -a -d "$JPEG_PATH/include"; then
++ JPEG_INCLUDE="-I$JPEG_PATH/include"
+ fi
+- if test -n "$SGE_LIBPATH"; then
++ if test -n "$JPEG_LIBPATH"; then
+ :
+- elif test -d "$SGE_PATH/lib${bit64_sfx}"; then
++ elif test -d "$JPEG_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SGE_PATH/lib${bit64_sfx}; do
++ for x in $JPEG_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- SGE_LIBPATH="${ncbi_rp_L_flags}"
++ JPEG_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SGE_PATH/lib${bit64_sfx}; do
++ for x in $JPEG_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$SGE_PATH/lib"; then
++ elif test -d "$JPEG_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $SGE_PATH/lib; do
++ for x in $JPEG_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- SGE_LIBPATH="${ncbi_rp_L_flags}"
++ JPEG_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $SGE_PATH/lib; do
++ for x in $JPEG_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- SGE_LIBS="$SGE_LIBPATH -ldrmaa "
++ JPEG_LIBS="$JPEG_LIBPATH -ljpeg "
+ else
+- SGE_INCLUDE=""
+- SGE_LIBS="-ldrmaa "
++ JPEG_INCLUDE=""
++ JPEG_LIBS="-ljpeg "
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libdrmaa$in_path" >&5
+-echo $ECHO_N "checking for libdrmaa$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_sge+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libjpeg$in_path" >&5
++echo $ECHO_N "checking for libjpeg$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_jpeg+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $SGE_INCLUDE $orig_CPPFLAGS"
+- LIBS="$SGE_LIBS $orig_LIBS"
++ CPPFLAGS=" $JPEG_INCLUDE $orig_CPPFLAGS"
++ LIBS="$JPEG_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+@@ -31964,67 +36915,86 @@
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+ #include <sys/types.h>
+- #include <drmaa.h>
++ #include <stdio.h>
++ extern "C" {
++ #include <jpeglib.h>
++ }
+ int
+ main ()
+ {
+-char buf[1024]; drmaa_init("SGE", buf, sizeof(buf));
++struct jpeg_decompress_struct cinfo;
++ struct jpeg_error_mgr jerr;
++ cinfo.err = jpeg_std_error(&jerr);
++
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_sge=yes
++ ncbi_cv_lib_jpeg=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_sge=no
++ ncbi_cv_lib_jpeg=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_sge" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_sge" >&6
+- if test "$ncbi_cv_lib_sge" = "no"; then
+- if test "${with_sge:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-sge explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-sge explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_jpeg" >&5
++echo "${ECHO_T}$ncbi_cv_lib_jpeg" >&6; }
++ if test "$ncbi_cv_lib_jpeg" = "no"; then
++ if test "${with_jpeg:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-jpeg explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-jpeg explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_sge" = "no"; then
+- SGE_PATH="No_SGE"
+- SGE_INCLUDE=
+- SGE_LIBS=
++ if test "$with_jpeg" = "no"; then
++ JPEG_PATH="No_JPEG"
++ JPEG_INCLUDE=
++ JPEG_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}SGE"; WithPackagesSep=" "
+- SGE_INCLUDE=" $SGE_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}JPEG"; WithPackagesSep=" "
++ JPEG_INCLUDE=" $JPEG_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBSGE 1
++#define HAVE_LIBJPEG 1
+ _ACEOF
+
+ fi
+@@ -32032,170 +37002,157 @@
+
+
+
+-
+-### muParser
+-case "$with_muparser" in
+- yes | '' ) : ${MUPARSER_PATH=$NCBI/muParser} ;;
+- * ) MUPARSER_PATH=$with_muparser ;;
+-esac
+-
+-if test -d "$MUPARSER_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $MUPARSER_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $MUPARSER_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- MUPARSER_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$MUPARSER_PATH" in
+- /*) ;;
+- * ) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+-fi
+-if test -d "$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
+- MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
+-elif test -d "$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
+- MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
+-fi
+-
+-if test "$with_muparser" != "no"; then
+- case "$with_muparser" in
++# : ${PNG_PATH=/usr/sfw}
++if test "$with_png" != "no"; then
++ case "$with_png" in
+ yes | "" ) ;;
+- * ) MUPARSER_PATH=$with_muparser ;;
++ * ) PNG_PATH=$with_png ;;
+ esac
+- if test -d "$MUPARSER_PATH"; then
+- in_path=" in $MUPARSER_PATH"
+- if test -z "$MUPARSER_INCLUDE" -a -d "$MUPARSER_PATH/include"; then
+- MUPARSER_INCLUDE="-I$MUPARSER_PATH/include"
++ if test -d "$PNG_PATH"; then
++ in_path=" in $PNG_PATH"
++ if test -z "$PNG_INCLUDE" -a -d "$PNG_PATH/include"; then
++ PNG_INCLUDE="-I$PNG_PATH/include"
+ fi
+- if test -n "$MUPARSER_LIBPATH"; then
++ if test -n "$PNG_LIBPATH"; then
+ :
+- elif test -d "$MUPARSER_PATH/lib${bit64_sfx}"; then
++ elif test -d "$PNG_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $MUPARSER_PATH/lib${bit64_sfx}; do
++ for x in $PNG_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
++ PNG_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $MUPARSER_PATH/lib${bit64_sfx}; do
++ for x in $PNG_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$MUPARSER_PATH/lib"; then
++ elif test -d "$PNG_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $MUPARSER_PATH/lib; do
++ for x in $PNG_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
++ PNG_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $MUPARSER_PATH/lib; do
++ for x in $PNG_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- MUPARSER_LIBS="$MUPARSER_LIBPATH -lmuparser "
++ PNG_LIBS="$PNG_LIBPATH -lpng $Z_LIBS"
+ else
+- MUPARSER_INCLUDE=""
+- MUPARSER_LIBS="-lmuparser "
++ PNG_INCLUDE=""
++ PNG_LIBS="-lpng $Z_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libmuparser$in_path" >&5
+-echo $ECHO_N "checking for libmuparser$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_muparser+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libpng$in_path" >&5
++echo $ECHO_N "checking for libpng$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_png+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $MUPARSER_INCLUDE $orig_CPPFLAGS"
+- LIBS="$MUPARSER_LIBS $orig_LIBS"
++ CPPFLAGS="$Z_INCLUDE $PNG_INCLUDE $orig_CPPFLAGS"
++ LIBS="$PNG_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <muParser.h>
++#include <png.h>
+ int
+ main ()
+ {
+-mu::Parser parser;
++png_structp png_ptr
++ = png_create_read_struct(PNG_LIBPNG_VER_STRING, NULL, NULL, NULL);
++
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_muparser=yes
++ ncbi_cv_lib_png=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_muparser=no
++ ncbi_cv_lib_png=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_muparser" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_muparser" >&6
+- if test "$ncbi_cv_lib_muparser" = "no"; then
+- if test "${with_muparser:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-muparser explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-muparser explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_png" >&5
++echo "${ECHO_T}$ncbi_cv_lib_png" >&6; }
++ if test "$ncbi_cv_lib_png" = "no"; then
++ if test "${with_png:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-png explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-png explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_muparser" = "no"; then
+- MUPARSER_PATH="No_MUPARSER"
+- MUPARSER_INCLUDE=
+- MUPARSER_LIBS=
++ if test "$with_png" = "no"; then
++ PNG_PATH="No_PNG"
++ PNG_INCLUDE=
++ PNG_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}MUPARSER"; WithPackagesSep=" "
+- MUPARSER_INCLUDE=" $MUPARSER_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}PNG"; WithPackagesSep=" "
++ PNG_INCLUDE="$Z_INCLUDE $PNG_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBMUPARSER 1
++#define HAVE_LIBPNG 1
+ _ACEOF
+
+ fi
+@@ -32203,1627 +37160,1799 @@
+
+
+
+-
+-### hdf5
+-case "$with_hdf5" in
+- yes | '' ) : ${HDF5_PATH=$NCBI/hdf5} ;;
+- * ) HDF5_PATH=$with_hdf5 ;;
+-esac
+-
+-if test -d "$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"; then
+- HDF5_PATH=$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}
+-elif test -d "$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}"; then
+- HDF5_PATH=$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}
+-fi
+-if test -d "$HDF5_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $HDF5_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $HDF5_PATH && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- HDF5_PATH=$ncbi_fix_dir_tmp2
+- else
+- case "$HDF5_PATH" in
+- /*) ;;
+- * ) HDF5_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+- fi
+- ;;
+- /*) HDF5_PATH=$ncbi_fix_dir_tmp ;;
+- esac
+-fi
+-
+-if test "$with_hdf5" != "no"; then
+- case "$with_hdf5" in
++# : ${TIFF_PATH=/usr/sfw}
++if test "$with_tiff" != "no"; then
++ case "$with_tiff" in
+ yes | "" ) ;;
+- * ) HDF5_PATH=$with_hdf5 ;;
++ * ) TIFF_PATH=$with_tiff ;;
+ esac
+- if test -d "$HDF5_PATH"; then
+- in_path=" in $HDF5_PATH"
+- if test -z "$HDF5_INCLUDE" -a -d "$HDF5_PATH/include"; then
+- HDF5_INCLUDE="-I$HDF5_PATH/include"
++ if test -d "$TIFF_PATH"; then
++ in_path=" in $TIFF_PATH"
++ if test -z "$TIFF_INCLUDE" -a -d "$TIFF_PATH/include"; then
++ TIFF_INCLUDE="-I$TIFF_PATH/include"
+ fi
+- if test -n "$HDF5_LIBPATH"; then
++ if test -n "$TIFF_LIBPATH"; then
+ :
+- elif test -d "$HDF5_PATH/lib${bit64_sfx}"; then
++ elif test -d "$TIFF_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $HDF5_PATH/lib${bit64_sfx}; do
++ for x in $TIFF_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- HDF5_LIBPATH="${ncbi_rp_L_flags}"
++ TIFF_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $HDF5_PATH/lib${bit64_sfx}; do
++ for x in $TIFF_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$HDF5_PATH/lib"; then
++ elif test -d "$TIFF_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $HDF5_PATH/lib; do
++ for x in $TIFF_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- HDF5_LIBPATH="${ncbi_rp_L_flags}"
++ TIFF_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $HDF5_PATH/lib; do
++ for x in $TIFF_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- HDF5_LIBS="$HDF5_LIBPATH -lhdf5_cpp -lhdf5"
++ TIFF_LIBS="$TIFF_LIBPATH -ltiff $Z_LIBS"
+ else
+- HDF5_INCLUDE=""
+- HDF5_LIBS="-lhdf5_cpp -lhdf5"
++ TIFF_INCLUDE=""
++ TIFF_LIBS="-ltiff $Z_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libhdf5_cpp$in_path" >&5
+-echo $ECHO_N "checking for libhdf5_cpp$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_hdf5+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libtiff$in_path" >&5
++echo $ECHO_N "checking for libtiff$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_tiff+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $HDF5_INCLUDE $orig_CPPFLAGS"
+- LIBS="$HDF5_LIBS $orig_LIBS"
++ CPPFLAGS=" $TIFF_INCLUDE $orig_CPPFLAGS"
++ LIBS="$TIFF_LIBS $JPEG_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <H5Cpp.h>
++#include <tiffio.h>
+ int
+ main ()
+ {
+-H5::H5Library::open();
++TIFF* tiff = TIFFOpen("foo", "r");
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_hdf5=yes
++ ncbi_cv_lib_tiff=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_hdf5=no
++ ncbi_cv_lib_tiff=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_hdf5" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_hdf5" >&6
+- if test "$ncbi_cv_lib_hdf5" = "no"; then
+- if test "${with_hdf5:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-hdf5 explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-hdf5 explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_tiff" >&5
++echo "${ECHO_T}$ncbi_cv_lib_tiff" >&6; }
++ if test "$ncbi_cv_lib_tiff" = "no"; then
++ if test "${with_tiff:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-tiff explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-tiff explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_hdf5" = "no"; then
+- HDF5_PATH="No_HDF5"
+- HDF5_INCLUDE=
+- HDF5_LIBS=
++ if test "$with_tiff" = "no"; then
++ TIFF_PATH="No_TIFF"
++ TIFF_INCLUDE=
++ TIFF_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}HDF5"; WithPackagesSep=" "
+- HDF5_INCLUDE=" $HDF5_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}TIFF"; WithPackagesSep=" "
++ TIFF_INCLUDE=" $TIFF_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBHDF5 1
++#define HAVE_LIBTIFF 1
+ _ACEOF
+
+ fi
+
+
+
++## etc.
+
+-
+-### Image libraries
+-# : ${JPEG_PATH=/usr/sfw}
+-# Grr... jpeglib.h isn't especially well-behaved.
+-if test "$with_jpeg" != "no"; then
+- case "$with_jpeg" in
++# Paths?
++with_ungif=$with_gif
++if test "$with_ungif" != "no"; then
++ case "$with_ungif" in
+ yes | "" ) ;;
+- * ) JPEG_PATH=$with_jpeg ;;
++ * ) UNGIF_PATH=$with_ungif ;;
+ esac
+- if test -d "$JPEG_PATH"; then
+- in_path=" in $JPEG_PATH"
+- if test -z "$JPEG_INCLUDE" -a -d "$JPEG_PATH/include"; then
+- JPEG_INCLUDE="-I$JPEG_PATH/include"
++ if test -d "$UNGIF_PATH"; then
++ in_path=" in $UNGIF_PATH"
++ if test -z "$UNGIF_INCLUDE" -a -d "$UNGIF_PATH/include"; then
++ UNGIF_INCLUDE="-I$UNGIF_PATH/include"
+ fi
+- if test -n "$JPEG_LIBPATH"; then
++ if test -n "$UNGIF_LIBPATH"; then
+ :
+- elif test -d "$JPEG_PATH/lib${bit64_sfx}"; then
++ elif test -d "$UNGIF_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $JPEG_PATH/lib${bit64_sfx}; do
++ for x in $UNGIF_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- JPEG_LIBPATH="${ncbi_rp_L_flags}"
++ UNGIF_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $JPEG_PATH/lib${bit64_sfx}; do
++ for x in $UNGIF_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$JPEG_PATH/lib"; then
++ elif test -d "$UNGIF_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $JPEG_PATH/lib; do
++ for x in $UNGIF_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- JPEG_LIBPATH="${ncbi_rp_L_flags}"
++ UNGIF_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $JPEG_PATH/lib; do
++ for x in $UNGIF_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- JPEG_LIBS="$JPEG_LIBPATH -ljpeg "
++ UNGIF_LIBS="$UNGIF_LIBPATH -lungif $X_LIBS -lX11"
+ else
+- JPEG_INCLUDE=""
+- JPEG_LIBS="-ljpeg "
++ UNGIF_INCLUDE=""
++ UNGIF_LIBS="-lungif $X_LIBS -lX11"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libjpeg$in_path" >&5
+-echo $ECHO_N "checking for libjpeg$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_jpeg+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libungif$in_path" >&5
++echo $ECHO_N "checking for libungif$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_ungif+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $JPEG_INCLUDE $orig_CPPFLAGS"
+- LIBS="$JPEG_LIBS $orig_LIBS"
++ CPPFLAGS=" $UNGIF_INCLUDE $orig_CPPFLAGS"
++ LIBS="$UNGIF_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <sys/types.h>
+- #include <stdio.h>
+ extern "C" {
+- #include <jpeglib.h>
++ #include <gif_lib.h>
+ }
+ int
+ main ()
+ {
+-struct jpeg_decompress_struct cinfo;
+- struct jpeg_error_mgr jerr;
+- cinfo.err = jpeg_std_error(&jerr);
+-
++GifFileType* fp = DGifOpenFileName("foo");
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_jpeg=yes
++ ncbi_cv_lib_ungif=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_jpeg=no
++ ncbi_cv_lib_ungif=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_jpeg" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_jpeg" >&6
+- if test "$ncbi_cv_lib_jpeg" = "no"; then
+- if test "${with_jpeg:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-jpeg explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-jpeg explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_ungif" >&5
++echo "${ECHO_T}$ncbi_cv_lib_ungif" >&6; }
++ if test "$ncbi_cv_lib_ungif" = "no"; then
++ if test "${with_ungif:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-ungif explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-ungif explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_jpeg" = "no"; then
+- JPEG_PATH="No_JPEG"
+- JPEG_INCLUDE=
+- JPEG_LIBS=
++ if test "$with_ungif" = "no"; then
++ UNGIF_PATH="No_UNGIF"
++ UNGIF_INCLUDE=
++ UNGIF_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}JPEG"; WithPackagesSep=" "
+- JPEG_INCLUDE=" $JPEG_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}UNGIF"; WithPackagesSep=" "
++ UNGIF_INCLUDE=" $UNGIF_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBJPEG 1
++#define HAVE_LIBUNGIF 1
+ _ACEOF
+
+ fi
+
+
+
+-
+-# : ${PNG_PATH=/usr/sfw}
+-if test "$with_png" != "no"; then
+- case "$with_png" in
++if test "$with_ungif" = "no"; then
++ if test "$with_gif" != "no"; then
++ case "$with_gif" in
+ yes | "" ) ;;
+- * ) PNG_PATH=$with_png ;;
++ * ) GIF_PATH=$with_gif ;;
+ esac
+- if test -d "$PNG_PATH"; then
+- in_path=" in $PNG_PATH"
+- if test -z "$PNG_INCLUDE" -a -d "$PNG_PATH/include"; then
+- PNG_INCLUDE="-I$PNG_PATH/include"
++ if test -d "$GIF_PATH"; then
++ in_path=" in $GIF_PATH"
++ if test -z "$GIF_INCLUDE" -a -d "$GIF_PATH/include"; then
++ GIF_INCLUDE="-I$GIF_PATH/include"
+ fi
+- if test -n "$PNG_LIBPATH"; then
++ if test -n "$GIF_LIBPATH"; then
+ :
+- elif test -d "$PNG_PATH/lib${bit64_sfx}"; then
++ elif test -d "$GIF_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $PNG_PATH/lib${bit64_sfx}; do
++ for x in $GIF_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- PNG_LIBPATH="${ncbi_rp_L_flags}"
++ GIF_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $PNG_PATH/lib${bit64_sfx}; do
++ for x in $GIF_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$PNG_PATH/lib"; then
++ elif test -d "$GIF_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $PNG_PATH/lib; do
++ for x in $GIF_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- PNG_LIBPATH="${ncbi_rp_L_flags}"
++ GIF_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $PNG_PATH/lib; do
++ for x in $GIF_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- PNG_LIBS="$PNG_LIBPATH -lpng $Z_LIBS"
++ GIF_LIBS="$GIF_LIBPATH -lgif $X_LIBS -lX11"
+ else
+- PNG_INCLUDE=""
+- PNG_LIBS="-lpng $Z_LIBS"
++ GIF_INCLUDE=""
++ GIF_LIBS="-lgif $X_LIBS -lX11"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libpng$in_path" >&5
+-echo $ECHO_N "checking for libpng$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_png+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libgif$in_path" >&5
++echo $ECHO_N "checking for libgif$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_gif+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$Z_INCLUDE $PNG_INCLUDE $orig_CPPFLAGS"
+- LIBS="$PNG_LIBS $orig_LIBS"
++ CPPFLAGS=" $GIF_INCLUDE $orig_CPPFLAGS"
++ LIBS="$GIF_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <png.h>
++extern "C" {
++ #include <gif_lib.h>
++ }
+ int
+ main ()
+ {
+-png_structp png_ptr
+- = png_create_read_struct(PNG_LIBPNG_VER_STRING, NULL, NULL, NULL);
+-
++GifFileType* fp = DGifOpenFileName("foo");
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_png=yes
++ ncbi_cv_lib_gif=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_png=no
++ ncbi_cv_lib_gif=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_png" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_png" >&6
+- if test "$ncbi_cv_lib_png" = "no"; then
+- if test "${with_png:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-png explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-png explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gif" >&5
++echo "${ECHO_T}$ncbi_cv_lib_gif" >&6; }
++ if test "$ncbi_cv_lib_gif" = "no"; then
++ if test "${with_gif:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-gif explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-gif explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_png" = "no"; then
+- PNG_PATH="No_PNG"
+- PNG_INCLUDE=
+- PNG_LIBS=
++ if test "$with_gif" = "no"; then
++ GIF_PATH="No_GIF"
++ GIF_INCLUDE=
++ GIF_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}PNG"; WithPackagesSep=" "
+- PNG_INCLUDE="$Z_INCLUDE $PNG_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}GIF"; WithPackagesSep=" "
++ GIF_INCLUDE=" $GIF_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBPNG 1
++#define HAVE_LIBGIF 1
+ _ACEOF
+
+ fi
+
+
+
++else
+
+-# : ${TIFF_PATH=/usr/sfw}
+-if test "$with_tiff" != "no"; then
+- case "$with_tiff" in
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBGIF 1
++_ACEOF
++
++ GIF_INCLUDE=$UNGIF_INCLUDE
++ GIF_LIBS=$UNGIF_LIBS
++fi
++
++case "$x_libraries" in */*) : ${XPM_PATH=`dirname "$x_libraries"`} ;; esac
++if test "$with_xpm" != "no"; then
++ case "$with_xpm" in
+ yes | "" ) ;;
+- * ) TIFF_PATH=$with_tiff ;;
++ * ) XPM_PATH=$with_xpm ;;
+ esac
+- if test -d "$TIFF_PATH"; then
+- in_path=" in $TIFF_PATH"
+- if test -z "$TIFF_INCLUDE" -a -d "$TIFF_PATH/include"; then
+- TIFF_INCLUDE="-I$TIFF_PATH/include"
++ if test -d "$XPM_PATH"; then
++ in_path=" in $XPM_PATH"
++ if test -z "$XPM_INCLUDE" -a -d "$XPM_PATH/include"; then
++ XPM_INCLUDE="-I$XPM_PATH/include"
+ fi
+- if test -n "$TIFF_LIBPATH"; then
++ if test -n "$XPM_LIBPATH"; then
+ :
+- elif test -d "$TIFF_PATH/lib${bit64_sfx}"; then
++ elif test -d "$XPM_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $TIFF_PATH/lib${bit64_sfx}; do
++ for x in $XPM_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- TIFF_LIBPATH="${ncbi_rp_L_flags}"
++ XPM_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $TIFF_PATH/lib${bit64_sfx}; do
++ for x in $XPM_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$TIFF_PATH/lib"; then
++ elif test -d "$XPM_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $TIFF_PATH/lib; do
++ for x in $XPM_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- TIFF_LIBPATH="${ncbi_rp_L_flags}"
++ XPM_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $TIFF_PATH/lib; do
++ for x in $XPM_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- TIFF_LIBS="$TIFF_LIBPATH -ltiff $Z_LIBS"
++ XPM_LIBS="$XPM_LIBPATH -lXpm $X_LIBS -lX11"
+ else
+- TIFF_INCLUDE=""
+- TIFF_LIBS="-ltiff $Z_LIBS"
++ XPM_INCLUDE=""
++ XPM_LIBS="-lXpm $X_LIBS -lX11"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libtiff$in_path" >&5
+-echo $ECHO_N "checking for libtiff$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_tiff+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libXpm$in_path" >&5
++echo $ECHO_N "checking for libXpm$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_xpm+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $TIFF_INCLUDE $orig_CPPFLAGS"
+- LIBS="$TIFF_LIBS $JPEG_LIBS $orig_LIBS"
++ CPPFLAGS="$X_CFLAGS $XPM_INCLUDE $orig_CPPFLAGS"
++ LIBS="$XPM_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <tiffio.h>
++#include <X11/xpm.h>
+ int
+ main ()
+ {
+-TIFF* tiff = TIFFOpen("foo", "r");
++XpmImage image; XpmInfo info;
++ XpmReadFileToXpmImage("foo", &image, &info);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_tiff=yes
++ ncbi_cv_lib_xpm=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_tiff=no
++ ncbi_cv_lib_xpm=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_tiff" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_tiff" >&6
+- if test "$ncbi_cv_lib_tiff" = "no"; then
+- if test "${with_tiff:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-tiff explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-tiff explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_xpm" >&5
++echo "${ECHO_T}$ncbi_cv_lib_xpm" >&6; }
++ if test "$ncbi_cv_lib_xpm" = "no"; then
++ if test "${with_xpm:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-xpm explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-xpm explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_tiff" = "no"; then
+- TIFF_PATH="No_TIFF"
+- TIFF_INCLUDE=
+- TIFF_LIBS=
++ if test "$with_xpm" = "no"; then
++ XPM_PATH="No_XPM"
++ XPM_INCLUDE=
++ XPM_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}TIFF"; WithPackagesSep=" "
+- TIFF_INCLUDE=" $TIFF_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}XPM"; WithPackagesSep=" "
++ XPM_INCLUDE="$X_CFLAGS $XPM_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBTIFF 1
++#define HAVE_LIBXPM 1
+ _ACEOF
+
+ fi
+
+
+
+-## etc.
++# The use of X_CFLAGS is probably redundant, but shouldn't hurt.
+
+-# Paths?
+-with_ungif=$with_gif
+-if test "$with_ungif" != "no"; then
+- case "$with_ungif" in
+- yes | "" ) ;;
+- * ) UNGIF_PATH=$with_ungif ;;
+- esac
+- if test -d "$UNGIF_PATH"; then
+- in_path=" in $UNGIF_PATH"
+- if test -z "$UNGIF_INCLUDE" -a -d "$UNGIF_PATH/include"; then
+- UNGIF_INCLUDE="-I$UNGIF_PATH/include"
+- fi
+- if test -n "$UNGIF_LIBPATH"; then
+- :
+- elif test -d "$UNGIF_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $UNGIF_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
++## FreeType and FTGL
++if test "$with_freetype" != "no" ; then
++ : ${FREETYPE_BINPATH=$FREETYPE_PATH/bin}
++ # Extract the first word of "freetype-config", so it can be a program name with args.
++set dummy freetype-config; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_freetype_config+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ case $freetype_config in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_freetype_config="$freetype_config" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_dummy="$FREETYPE_BINPATH:$PATH"
++for as_dir in $as_dummy
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_freetype_config="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
+ done
+- UNGIF_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $UNGIF_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+ done
+- UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++IFS=$as_save_IFS
++
++ ;;
++esac
+ fi
+- elif test -d "$UNGIF_PATH/lib"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
++freetype_config=$ac_cv_path_freetype_config
++if test -n "$freetype_config"; then
++ { echo "$as_me:$LINENO: result: $freetype_config" >&5
++echo "${ECHO_T}$freetype_config" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++fi
++
++
++ if test -n "$freetype_config" ; then
++ : ${FREETYPE_BINPATH=`dirname $freetype_config`}
++ : ${FREETYPE_INCLUDE=`$freetype_config --cflags`}
++ if test -z "${FREETYPE_LIBS+set}"; then
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $UNGIF_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- UNGIF_LIBPATH="${ncbi_rp_L_flags}"
++ FREETYPE_LIBS=`$freetype_config --libs | sed -e "$no_usr_lib"`
+ else
++ FREETYPE_LIBS=
++ ncbi_rp_L_sep=
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $UNGIF_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ for x in `$freetype_config --libs | sed -e "$no_usr_lib"`; do
++ case "$x" in
++ -L*)
++ FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_L_sep}$x"
++ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
++ ;;
++ *)
++ FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ ;;
++ esac
++ ncbi_rp_L_sep=" "
+ done
+- UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}"
+ fi
+ fi
+- UNGIF_LIBS="$UNGIF_LIBPATH -lungif $X_LIBS -lX11"
+- else
+- UNGIF_INCLUDE=""
+- UNGIF_LIBS="-lungif $X_LIBS -lX11"
+- in_path=
++ case "$host_os:$bit64_sfx" in
++ solaris*:64 )
++ ftprefix=`$freetype_config --exec-prefix`
++ if test -d "$ftprefix/lib/64"; then
++ FREETYPE_LIBS=`echo $FREETYPE_LIBS \
++ | sed -e "s,$ftprefix/lib ,$ftprefix/lib/64 ,g"`
+ fi
+- echo "$as_me:$LINENO: checking for libungif$in_path" >&5
+-echo $ECHO_N "checking for libungif$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_ungif+set}" = set; then
++ ;;
++ esac
++ { echo "$as_me:$LINENO: checking whether FREETYPE_INCLUDE needs doctoring" >&5
++echo $ECHO_N "checking whether FREETYPE_INCLUDE needs doctoring... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_freetype_fix_include+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $UNGIF_INCLUDE $orig_CPPFLAGS"
+- LIBS="$UNGIF_LIBS $orig_LIBS"
++ CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-extern "C" {
+- #include <gif_lib.h>
+- }
++#include <ft2build.h>
+ int
+ main ()
+ {
+-GifFileType* fp = DGifOpenFileName("foo");
++
+ ;
+ return 0;
+ }
+ _ACEOF
+-rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++rm -f conftest.$ac_objext
++if { (ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+- { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -s conftest.$ac_objext'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_ungif=yes
++ ncbi_cv_lib_freetype_fix_include=no
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_ungif=no
+-fi
+-rm -f conftest.err conftest.$ac_objext \
+- conftest$ac_exeext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_ungif" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_ungif" >&6
+- if test "$ncbi_cv_lib_ungif" = "no"; then
+- if test "${with_ungif:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-ungif explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-ungif explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- fi
+- if test "$with_ungif" = "no"; then
+- UNGIF_PATH="No_UNGIF"
+- UNGIF_INCLUDE=
+- UNGIF_LIBS=
+- else
+- WithPackages="$WithPackages${WithPackagesSep}UNGIF"; WithPackagesSep=" "
+- UNGIF_INCLUDE=" $UNGIF_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBUNGIF 1
+-_ACEOF
+-
++ ncbi_cv_lib_freetype_fix_include=yes
+ fi
+
+-
+-
+-if test "$with_ungif" = "no"; then
+- if test "$with_gif" != "no"; then
+- case "$with_gif" in
+- yes | "" ) ;;
+- * ) GIF_PATH=$with_gif ;;
+- esac
+- if test -d "$GIF_PATH"; then
+- in_path=" in $GIF_PATH"
+- if test -z "$GIF_INCLUDE" -a -d "$GIF_PATH/include"; then
+- GIF_INCLUDE="-I$GIF_PATH/include"
+- fi
+- if test -n "$GIF_LIBPATH"; then
+- :
+- elif test -d "$GIF_PATH/lib${bit64_sfx}"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $GIF_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- GIF_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $GIF_PATH/lib${bit64_sfx}; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
+- elif test -d "$GIF_PATH/lib"; then
+- ncbi_rp_L_flags=
+- ncbi_rp_L_sep=$CONF_f_libpath
+- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $GIF_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- done
+- GIF_LIBPATH="${ncbi_rp_L_flags}"
+- else
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $GIF_PATH/lib; do
+- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_L_sep=" $CONF_f_libpath"
+- x=`echo $x | sed -e "$ncbi_rpath_sed"`
+- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+- ncbi_rp_R_sep=:
+- done
+- GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+- fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+- GIF_LIBS="$GIF_LIBPATH -lgif $X_LIBS -lX11"
+- else
+- GIF_INCLUDE=""
+- GIF_LIBS="-lgif $X_LIBS -lX11"
+- in_path=
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype_fix_include" >&5
++echo "${ECHO_T}$ncbi_cv_lib_freetype_fix_include" >&6; }
++ if test "$ncbi_cv_lib_freetype_fix_include" = yes; then
++ FREETYPE_INCLUDE=`echo "$FREETYPE_INCLUDE" |\
++ sed -e 's:\(-I[^ ]*\)\(/freetype2\):\1 \1\2:g'`
+ fi
+- echo "$as_me:$LINENO: checking for libgif$in_path" >&5
+-echo $ECHO_N "checking for libgif$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_gif+set}" = set; then
++ { echo "$as_me:$LINENO: checking whether FreeType works" >&5
++echo $ECHO_N "checking whether FreeType works... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_freetype+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $GIF_INCLUDE $orig_CPPFLAGS"
+- LIBS="$GIF_LIBS $orig_LIBS"
++ CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
++ LIBS="$FREETYPE_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-extern "C" {
+- #include <gif_lib.h>
+- }
++#include <ft2build.h>
++ #include FT_FREETYPE_H
+ int
+ main ()
+ {
+-GifFileType* fp = DGifOpenFileName("foo");
++FT_Select_Charmap(NULL, ft_encoding_unicode);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_gif=yes
++ ncbi_cv_lib_freetype=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_gif=no
++ ncbi_cv_lib_freetype=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_gif" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_gif" >&6
+- if test "$ncbi_cv_lib_gif" = "no"; then
+- if test "${with_gif:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-gif explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-gif explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype" >&5
++echo "${ECHO_T}$ncbi_cv_lib_freetype" >&6; }
++ if test "$ncbi_cv_lib_freetype" = no; then
++ if test "${with_freetype:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
++ { (exit 1); exit 1; }; }
++ fi
++ fi
++ else
++ if test "${with_freetype:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_gif" = "no"; then
+- GIF_PATH="No_GIF"
+- GIF_INCLUDE=
+- GIF_LIBS=
++if test "$with_freetype" = "no" ; then
++ FREETYPE_PATH="No_FREETYPE"
++ FREETYPE_INCLUDE=
++ FREETYPE_LIBS=
++else
++ WithPackages="$WithPackages${WithPackagesSep}FreeType"; WithPackagesSep=" "
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_FREETYPE 1
++_ACEOF
++
++fi
++
++case "$with_ftgl" in
++ yes | '' ) ;;
++ * ) FTGL_PATH=$with_ftgl ;;
++esac
++
++if test -d "$FTGL_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $FTGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $FTGL_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ FTGL_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$FTGL_PATH" in
++ /*) ;;
++ * ) FTGL_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) FTGL_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++fi
++if test -d "$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
++ FTGL_LIBDIR=$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
++elif test -d "$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
++ FTGL_LIBDIR=$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
++fi
++ncbi_fix_dir_tmp=`if cd $FTGL_LIBDIR; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $FTGL_LIBDIR && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ FTGL_LIBDIR=$ncbi_fix_dir_tmp2
+ else
+- WithPackages="$WithPackages${WithPackagesSep}GIF"; WithPackagesSep=" "
+- GIF_INCLUDE=" $GIF_INCLUDE"
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBGIF 1
+-_ACEOF
+-
++ case "$FTGL_LIBDIR" in
++ /*) ;;
++ * ) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
++ esac
+ fi
+-
+-
+-
++ ;;
++ /*) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
++ esac
++ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $FTGL_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ FTGL_LIBPATH="${ncbi_rp_L_flags}"
+ else
+-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBGIF 1
+-_ACEOF
+-
+- GIF_INCLUDE=$UNGIF_INCLUDE
+- GIF_LIBS=$UNGIF_LIBS
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $FTGL_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+
+-test -n "$x_libraries" && : ${XPM_PATH=`dirname "$x_libraries"`}
+-if test "$with_xpm" != "no"; then
+- case "$with_xpm" in
++if test "$with_ftgl" != "no"; then
++ case "$with_ftgl" in
+ yes | "" ) ;;
+- * ) XPM_PATH=$with_xpm ;;
++ * ) FTGL_PATH=$with_ftgl ;;
+ esac
+- if test -d "$XPM_PATH"; then
+- in_path=" in $XPM_PATH"
+- if test -z "$XPM_INCLUDE" -a -d "$XPM_PATH/include"; then
+- XPM_INCLUDE="-I$XPM_PATH/include"
++ if test -d "$FTGL_PATH"; then
++ in_path=" in $FTGL_PATH"
++ if test -z "$FTGL_INCLUDE" -a -d "$FTGL_PATH/include"; then
++ FTGL_INCLUDE="-I$FTGL_PATH/include"
+ fi
+- if test -n "$XPM_LIBPATH"; then
++ if test -n "$FTGL_LIBPATH"; then
+ :
+- elif test -d "$XPM_PATH/lib${bit64_sfx}"; then
++ elif test -d "$FTGL_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $XPM_PATH/lib${bit64_sfx}; do
++ for x in $FTGL_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- XPM_LIBPATH="${ncbi_rp_L_flags}"
++ FTGL_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $XPM_PATH/lib${bit64_sfx}; do
++ for x in $FTGL_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$XPM_PATH/lib"; then
++ elif test -d "$FTGL_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $XPM_PATH/lib; do
++ for x in $FTGL_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- XPM_LIBPATH="${ncbi_rp_L_flags}"
++ FTGL_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $XPM_PATH/lib; do
++ for x in $FTGL_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- XPM_LIBS="$XPM_LIBPATH -lXpm $X_LIBS -lX11"
++ FTGL_LIBS="$FTGL_LIBPATH -lftgl $FREETYPE_LIBS"
+ else
+- XPM_INCLUDE=""
+- XPM_LIBS="-lXpm $X_LIBS -lX11"
++ FTGL_INCLUDE=""
++ FTGL_LIBS="-lftgl $FREETYPE_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libXpm$in_path" >&5
+-echo $ECHO_N "checking for libXpm$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_xpm+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libftgl$in_path" >&5
++echo $ECHO_N "checking for libftgl$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_ftgl+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$X_CFLAGS $XPM_INCLUDE $orig_CPPFLAGS"
+- LIBS="$XPM_LIBS $orig_LIBS"
++ CPPFLAGS="$FREETYPE_INCLUDE $FTGL_INCLUDE $orig_CPPFLAGS"
++ LIBS="$FTGL_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <X11/xpm.h>
++#include <FTGL/ftgl.h>
+ int
+ main ()
+ {
+-XpmImage image; XpmInfo info;
+- XpmReadFileToXpmImage("foo", &image, &info);
++FTSimpleLayout layout;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_xpm=yes
++ ncbi_cv_lib_ftgl=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_xpm=no
++ ncbi_cv_lib_ftgl=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_xpm" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_xpm" >&6
+- if test "$ncbi_cv_lib_xpm" = "no"; then
+- if test "${with_xpm:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-xpm explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-xpm explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_ftgl" >&5
++echo "${ECHO_T}$ncbi_cv_lib_ftgl" >&6; }
++ if test "$ncbi_cv_lib_ftgl" = "no"; then
++ if test "${with_ftgl:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-ftgl explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-ftgl explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_xpm" = "no"; then
+- XPM_PATH="No_XPM"
+- XPM_INCLUDE=
+- XPM_LIBS=
++ if test "$with_ftgl" = "no"; then
++ FTGL_PATH="No_FTGL"
++ FTGL_INCLUDE=
++ FTGL_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}XPM"; WithPackagesSep=" "
+- XPM_INCLUDE="$X_CFLAGS $XPM_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}FTGL"; WithPackagesSep=" "
++ FTGL_INCLUDE="$FREETYPE_INCLUDE $FTGL_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBXPM 1
++#define HAVE_LIBFTGL 1
+ _ACEOF
+
+ fi
+
+
+
+-# The use of X_CFLAGS is probably redundant, but shouldn't hurt.
+
+-## FreeType and FTGL
+-if test "$with_freetype" != "no" ; then
+- : ${FREETYPE_BINPATH=$FREETYPE_PATH/bin}
+- # Extract the first word of "freetype-config", so it can be a program name with args.
+-set dummy freetype-config; ac_word=$2
+-echo "$as_me:$LINENO: checking for $ac_word" >&5
+-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+-if test "${ac_cv_path_freetype_config+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- case $freetype_config in
+- [\\/]* | ?:[\\/]*)
+- ac_cv_path_freetype_config="$freetype_config" # Let the user override the test with a path.
+- ;;
+- *)
+- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-as_dummy="$FREETYPE_BINPATH:$PATH"
+-for as_dir in $as_dummy
+-do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- for ac_exec_ext in '' $ac_executable_extensions; do
+- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+- ac_cv_path_freetype_config="$as_dir/$ac_word$ac_exec_ext"
+- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+- break 2
+- fi
+-done
+-done
+
+- ;;
++if test "$with_magic" != "no"; then
++ case "$with_magic" in
++ yes | "" ) ;;
++ * ) MAGIC_PATH=$with_magic ;;
+ esac
++ if test -d "$MAGIC_PATH"; then
++ in_path=" in $MAGIC_PATH"
++ if test -z "$MAGIC_INCLUDE" -a -d "$MAGIC_PATH/include"; then
++ MAGIC_INCLUDE="-I$MAGIC_PATH/include"
+ fi
+-freetype_config=$ac_cv_path_freetype_config
+-
+-if test -n "$freetype_config"; then
+- echo "$as_me:$LINENO: result: $freetype_config" >&5
+-echo "${ECHO_T}$freetype_config" >&6
+-else
+- echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6
+-fi
+-
+- if test -n "$freetype_config" ; then
+- : ${FREETYPE_BINPATH=`dirname $freetype_config`}
+- : ${FREETYPE_INCLUDE=`$freetype_config --cflags`}
+- if test -z "${FREETYPE_LIBS+set}"; then
++ if test -n "$MAGIC_LIBPATH"; then
++ :
++ elif test -d "$MAGIC_PATH/lib${bit64_sfx}"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- FREETYPE_LIBS=`$freetype_config --libs | sed -e "$no_usr_lib"`
++ for x in $MAGIC_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ MAGIC_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- FREETYPE_LIBS=
+- ncbi_rp_L_sep=
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in `$freetype_config --libs | sed -e "$no_usr_lib"`; do
+- case "$x" in
+- -L*)
+- FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_L_sep}$x"
+- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
++ for x in $MAGIC_PATH/lib${bit64_sfx}; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+- ;;
+- *)
+- FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
+- ncbi_rp_R_flags=
+- ncbi_rp_R_sep=" $CONF_f_runpath"
+- ;;
+- esac
+- ncbi_rp_L_sep=" "
+ done
+- FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}"
+- fi
+- fi
+- case "$host_os:$bit64_sfx" in
+- solaris*:64 )
+- ftprefix=`$freetype_config --exec-prefix`
+- if test -d "$ftprefix/lib/64"; then
+- FREETYPE_LIBS=`echo $FREETYPE_LIBS \
+- | sed -e "s,$ftprefix/lib ,$ftprefix/lib/64 ,g"`
+- fi
+- ;;
+- esac
+- echo "$as_me:$LINENO: checking whether FREETYPE_INCLUDE needs doctoring" >&5
+-echo $ECHO_N "checking whether FREETYPE_INCLUDE needs doctoring... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_freetype_fix_include+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
+-else
+- CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
+-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
+-#include <ft2build.h>
+-int
+-main ()
+-{
+-
+- ;
+- return 0;
+-}
+-_ACEOF
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_lib_freetype_fix_include=no
++ MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++ elif test -d "$MAGIC_PATH/lib"; then
++ ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $MAGIC_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ MAGIC_LIBPATH="${ncbi_rp_L_flags}"
+ else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
+-
+-ncbi_cv_lib_freetype_fix_include=yes
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $MAGIC_PATH/lib; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype_fix_include" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_freetype_fix_include" >&6
+- if test "$ncbi_cv_lib_freetype_fix_include" = yes; then
+- FREETYPE_INCLUDE=`echo "$FREETYPE_INCLUDE" |\
+- sed -e 's:\(-I[^ ]*\)\(/freetype2\):\1 \1\2:g'`
++ MAGIC_LIBS="$MAGIC_LIBPATH -lmagic "
++ else
++ MAGIC_INCLUDE=""
++ MAGIC_LIBS="-lmagic "
++ in_path=
+ fi
+- echo "$as_me:$LINENO: checking whether FreeType works" >&5
+-echo $ECHO_N "checking whether FreeType works... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_freetype+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libmagic$in_path" >&5
++echo $ECHO_N "checking for libmagic$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_magic+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
+- LIBS="$FREETYPE_LIBS $orig_LIBS"
++ CPPFLAGS=" $MAGIC_INCLUDE $orig_CPPFLAGS"
++ LIBS="$MAGIC_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <ft2build.h>
+- #include FT_FREETYPE_H
++#include <magic.h>
+ int
+ main ()
+ {
+-FT_Select_Charmap(NULL, ft_encoding_unicode);
++magic_t m = magic_open(17);
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_freetype=yes
++ ncbi_cv_lib_magic=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_freetype=no
++ ncbi_cv_lib_magic=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_freetype" >&6
+- if test "$ncbi_cv_lib_freetype" = no; then
+- if test "${with_freetype:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
+- { (exit 1); exit 1; }; }
+- fi
+- fi
+- else
+- if test "${with_freetype:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_magic" >&5
++echo "${ECHO_T}$ncbi_cv_lib_magic" >&6; }
++ if test "$ncbi_cv_lib_magic" = "no"; then
++ if test "${with_magic:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-magic explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-magic explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+-if test "$with_freetype" = "no" ; then
+- FREETYPE_PATH="No_FREETYPE"
+- FREETYPE_INCLUDE=
+- FREETYPE_LIBS=
++ if test "$with_magic" = "no"; then
++ MAGIC_PATH="No_MAGIC"
++ MAGIC_INCLUDE=
++ MAGIC_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}FreeType"; WithPackagesSep=" "
++ WithPackages="$WithPackages${WithPackagesSep}MAGIC"; WithPackagesSep=" "
++ MAGIC_INCLUDE=" $MAGIC_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_FREETYPE 1
++#define HAVE_LIBMAGIC 1
+ _ACEOF
+
+ fi
+
+-case "$with_ftgl" in
+- yes | '' ) : ${FTGL_PATH=$NCBI/ftgl} ;;
+- * ) FTGL_PATH=$with_ftgl ;;
+-esac
+
+-if test -d "$FTGL_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $FTGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++
++
++
++# Mimetic
++case "$with_mimetic" in
++ yes | '' ) ;;
++ * ) MIMETIC_PATH=$with_mimetic ;;
++esac
++if test -d "$MIMETIC_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $MIMETIC_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+ case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $FTGL_PATH && $smart_pwd 2>/dev/null`
++ /.*) ncbi_fix_dir_tmp2=`cd $MIMETIC_PATH && $smart_pwd 2>/dev/null`
+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- FTGL_PATH=$ncbi_fix_dir_tmp2
++ MIMETIC_PATH=$ncbi_fix_dir_tmp2
+ else
+- case "$FTGL_PATH" in
++ case "$MIMETIC_PATH" in
+ /*) ;;
+- * ) FTGL_PATH=$ncbi_fix_dir_tmp ;;
++ * ) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+ ;;
+- /*) FTGL_PATH=$ncbi_fix_dir_tmp ;;
++ /*) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+-if test -d "$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
+- FTGL_LIBDIR=$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
+-elif test -d "$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
+- FTGL_LIBDIR=$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
+-fi
+-ncbi_fix_dir_tmp=`if cd $FTGL_LIBDIR; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+- case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $FTGL_LIBDIR && $smart_pwd 2>/dev/null`
+- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- FTGL_LIBDIR=$ncbi_fix_dir_tmp2
+- else
+- case "$FTGL_LIBDIR" in
+- /*) ;;
+- * ) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
+- esac
++for d in "$MIMETIC_LIBDIR" \
++ "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib" \
++ "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib" \
++ "$MIMETIC_PATH/lib${bit64_sfx}" \
++ "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}/lib" \
++ "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}/lib" \
++ "$MIMETIC_PATH/lib"; do
++ if test -d "$d"; then
++ MIMETIC_LIBDIR=$d
++ break
+ fi
+- ;;
+- /*) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
+- esac
++done
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $FTGL_LIBDIR; do
++ for x in $MIMETIC_LIBDIR; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- FTGL_LIBPATH="${ncbi_rp_L_flags}"
++ MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $FTGL_LIBDIR; do
++ for x in $MIMETIC_LIBDIR; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+
+-if test "$with_ftgl" != "no"; then
+- case "$with_ftgl" in
++if test "$with_mimetic" != "no"; then
++ case "$with_mimetic" in
+ yes | "" ) ;;
+- * ) FTGL_PATH=$with_ftgl ;;
++ * ) MIMETIC_PATH=$with_mimetic ;;
+ esac
+- if test -d "$FTGL_PATH"; then
+- in_path=" in $FTGL_PATH"
+- if test -z "$FTGL_INCLUDE" -a -d "$FTGL_PATH/include"; then
+- FTGL_INCLUDE="-I$FTGL_PATH/include"
++ if test -d "$MIMETIC_PATH"; then
++ in_path=" in $MIMETIC_PATH"
++ if test -z "$MIMETIC_INCLUDE" -a -d "$MIMETIC_PATH/include"; then
++ MIMETIC_INCLUDE="-I$MIMETIC_PATH/include"
+ fi
+- if test -n "$FTGL_LIBPATH"; then
++ if test -n "$MIMETIC_LIBPATH"; then
+ :
+- elif test -d "$FTGL_PATH/lib${bit64_sfx}"; then
++ elif test -d "$MIMETIC_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $FTGL_PATH/lib${bit64_sfx}; do
++ for x in $MIMETIC_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- FTGL_LIBPATH="${ncbi_rp_L_flags}"
++ MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $FTGL_PATH/lib${bit64_sfx}; do
++ for x in $MIMETIC_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$FTGL_PATH/lib"; then
++ elif test -d "$MIMETIC_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $FTGL_PATH/lib; do
++ for x in $MIMETIC_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- FTGL_LIBPATH="${ncbi_rp_L_flags}"
++ MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $FTGL_PATH/lib; do
++ for x in $MIMETIC_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- FTGL_LIBS="$FTGL_LIBPATH -lftgl $FREETYPE_LIBS"
++ MIMETIC_LIBS="$MIMETIC_LIBPATH -lmimetic "
+ else
+- FTGL_INCLUDE=""
+- FTGL_LIBS="-lftgl $FREETYPE_LIBS"
++ MIMETIC_INCLUDE=""
++ MIMETIC_LIBS="-lmimetic "
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libftgl$in_path" >&5
+-echo $ECHO_N "checking for libftgl$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_ftgl+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libmimetic$in_path" >&5
++echo $ECHO_N "checking for libmimetic$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_mimetic+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS="$FREETYPE_INCLUDE $FTGL_INCLUDE $orig_CPPFLAGS"
+- LIBS="$FTGL_LIBS $orig_LIBS"
++ CPPFLAGS=" $MIMETIC_INCLUDE $orig_CPPFLAGS"
++ LIBS="$MIMETIC_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <FTGL/ftgl.h>
++#include <mimetic/mimetic.h>
+ int
+ main ()
+ {
+-FTSimpleLayout layout;
++mimetic::MimeEntity me;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_ftgl=yes
++ ncbi_cv_lib_mimetic=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_ftgl=no
++ ncbi_cv_lib_mimetic=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_ftgl" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_ftgl" >&6
+- if test "$ncbi_cv_lib_ftgl" = "no"; then
+- if test "${with_ftgl:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-ftgl explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-ftgl explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_mimetic" >&5
++echo "${ECHO_T}$ncbi_cv_lib_mimetic" >&6; }
++ if test "$ncbi_cv_lib_mimetic" = "no"; then
++ if test "${with_mimetic:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-mimetic explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-mimetic explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_ftgl" = "no"; then
+- FTGL_PATH="No_FTGL"
+- FTGL_INCLUDE=
+- FTGL_LIBS=
++ if test "$with_mimetic" = "no"; then
++ MIMETIC_PATH="No_MIMETIC"
++ MIMETIC_INCLUDE=
++ MIMETIC_LIBS=
++ else
++ WithPackages="$WithPackages${WithPackagesSep}MIMETIC"; WithPackagesSep=" "
++ MIMETIC_INCLUDE=" $MIMETIC_INCLUDE"
++
++cat >>confdefs.h <<\_ACEOF
++#define HAVE_LIBMIMETIC 1
++_ACEOF
++
++ fi
++
++
++
++
++
++# gSOAP++
++case "$with_gsoap" in
++ yes | '' ) ;;
++ * ) GSOAP_PATH=$with_gsoap ;;
++esac
++if test -d "$GSOAP_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $GSOAP_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $GSOAP_PATH && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ GSOAP_PATH=$ncbi_fix_dir_tmp2
++ else
++ case "$GSOAP_PATH" in
++ /*) ;;
++ * ) GSOAP_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) GSOAP_PATH=$ncbi_fix_dir_tmp ;;
++ esac
++fi
++for d in "$GSOAP_LIBDIR" \
++ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
++ "$GSOAP_PATH/lib${bit64_sfx}" \
++ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}/lib" \
++ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}/lib" \
++ "$GSOAP_PATH/lib"; do
++ if test -d "$d"; then
++ GSOAP_LIBDIR=$d
++ ncbi_fix_dir_tmp=`if cd $GSOAP_LIBDIR; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++ case "$ncbi_fix_dir_tmp" in
++ /.*) ncbi_fix_dir_tmp2=`cd $GSOAP_LIBDIR && $smart_pwd 2>/dev/null`
++ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
++ GSOAP_LIBDIR=$ncbi_fix_dir_tmp2
++ else
++ case "$GSOAP_LIBDIR" in
++ /*) ;;
++ * ) GSOAP_LIBDIR=$ncbi_fix_dir_tmp ;;
++ esac
++ fi
++ ;;
++ /*) GSOAP_LIBDIR=$ncbi_fix_dir_tmp ;;
++ esac
++ break
++ fi
++done
++ncbi_rp_L_flags=
++ ncbi_rp_L_sep=$CONF_f_libpath
++ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
++ for x in $GSOAP_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ done
++ GSOAP_LIBPATH="${ncbi_rp_L_flags}"
++ else
++ ncbi_rp_R_flags=
++ ncbi_rp_R_sep=" $CONF_f_runpath"
++ for x in $GSOAP_LIBDIR; do
++ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
++ ncbi_rp_L_sep=" $CONF_f_libpath"
++ x=`echo $x | sed -e "$ncbi_rpath_sed"`
++ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
++ ncbi_rp_R_sep=:
++ done
++ GSOAP_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ fi
++
++: ${GSOAP_BINDIR=`dirname "$GSOAP_LIBDIR"`/bin}
++# Extract the first word of "soapcpp2", so it can be a program name with args.
++set dummy soapcpp2; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_GSOAP_SOAPCPP2+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ case $GSOAP_SOAPCPP2 in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_GSOAP_SOAPCPP2="$GSOAP_SOAPCPP2" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_dummy="$GSOAP_BINDIR:$PATH"
++for as_dir in $as_dummy
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_GSOAP_SOAPCPP2="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++done
++IFS=$as_save_IFS
++
++ ;;
++esac
++fi
++GSOAP_SOAPCPP2=$ac_cv_path_GSOAP_SOAPCPP2
++if test -n "$GSOAP_SOAPCPP2"; then
++ { echo "$as_me:$LINENO: result: $GSOAP_SOAPCPP2" >&5
++echo "${ECHO_T}$GSOAP_SOAPCPP2" >&6; }
+ else
+- WithPackages="$WithPackages${WithPackagesSep}FTGL"; WithPackagesSep=" "
+- FTGL_INCLUDE="$FREETYPE_INCLUDE $FTGL_INCLUDE"
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++fi
+
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBFTGL 1
+-_ACEOF
+
++# Extract the first word of "wsdl2h", so it can be a program name with args.
++set dummy wsdl2h; ac_word=$2
++{ echo "$as_me:$LINENO: checking for $ac_word" >&5
++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
++if test "${ac_cv_path_GSOAP_WSDL2H+set}" = set; then
++ echo $ECHO_N "(cached) $ECHO_C" >&6
++else
++ case $GSOAP_WSDL2H in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_GSOAP_WSDL2H="$GSOAP_WSDL2H" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_dummy="$GSOAP_BINDIR:$PATH"
++for as_dir in $as_dummy
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
++ ac_cv_path_GSOAP_WSDL2H="$as_dir/$ac_word$ac_exec_ext"
++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
+ fi
++done
++done
++IFS=$as_save_IFS
+
++ ;;
++esac
++fi
++GSOAP_WSDL2H=$ac_cv_path_GSOAP_WSDL2H
++if test -n "$GSOAP_WSDL2H"; then
++ { echo "$as_me:$LINENO: result: $GSOAP_WSDL2H" >&5
++echo "${ECHO_T}$GSOAP_WSDL2H" >&6; }
++else
++ { echo "$as_me:$LINENO: result: no" >&5
++echo "${ECHO_T}no" >&6; }
++fi
+
+
+
+-
+-if test "$with_magic" != "no"; then
+- case "$with_magic" in
++if test "$with_gsoap" != "no"; then
++ case "$with_gsoap" in
+ yes | "" ) ;;
+- * ) MAGIC_PATH=$with_magic ;;
++ * ) GSOAP_PATH=$with_gsoap ;;
+ esac
+- if test -d "$MAGIC_PATH"; then
+- in_path=" in $MAGIC_PATH"
+- if test -z "$MAGIC_INCLUDE" -a -d "$MAGIC_PATH/include"; then
+- MAGIC_INCLUDE="-I$MAGIC_PATH/include"
++ if test -d "$GSOAP_PATH"; then
++ in_path=" in $GSOAP_PATH"
++ if test -z "$GSOAP_INCLUDE" -a -d "$GSOAP_PATH/include"; then
++ GSOAP_INCLUDE="-I$GSOAP_PATH/include"
+ fi
+- if test -n "$MAGIC_LIBPATH"; then
++ if test -n "$GSOAP_LIBPATH"; then
+ :
+- elif test -d "$MAGIC_PATH/lib${bit64_sfx}"; then
++ elif test -d "$GSOAP_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $MAGIC_PATH/lib${bit64_sfx}; do
++ for x in $GSOAP_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- MAGIC_LIBPATH="${ncbi_rp_L_flags}"
++ GSOAP_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $MAGIC_PATH/lib${bit64_sfx}; do
++ for x in $GSOAP_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GSOAP_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$MAGIC_PATH/lib"; then
++ elif test -d "$GSOAP_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $MAGIC_PATH/lib; do
++ for x in $GSOAP_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- MAGIC_LIBPATH="${ncbi_rp_L_flags}"
++ GSOAP_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $MAGIC_PATH/lib; do
++ for x in $GSOAP_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ GSOAP_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- MAGIC_LIBS="$MAGIC_LIBPATH -lmagic "
++ GSOAP_LIBS="$GSOAP_LIBPATH -lgsoapssl++ $OPENSSL_LIBS $Z_LIBS"
+ else
+- MAGIC_INCLUDE=""
+- MAGIC_LIBS="-lmagic "
++ GSOAP_INCLUDE=""
++ GSOAP_LIBS="-lgsoapssl++ $OPENSSL_LIBS $Z_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libmagic$in_path" >&5
+-echo $ECHO_N "checking for libmagic$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_magic+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libgsoapssl++$in_path" >&5
++echo $ECHO_N "checking for libgsoapssl++$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_gsoap+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $MAGIC_INCLUDE $orig_CPPFLAGS"
+- LIBS="$MAGIC_LIBS $orig_LIBS"
++ CPPFLAGS=" $GSOAP_INCLUDE $orig_CPPFLAGS"
++ LIBS="$GSOAP_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <magic.h>
++#include <stdsoap2.h>
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultsubcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultstring(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultdetail(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultsubcode(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultdetail(struct soap*)
++ { return NULL; }
++ SOAP_FMAC3 void SOAP_FMAC4 soap_serializeheader(struct soap*) { }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_putheader(struct soap*) { return 0; }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_getheader(struct soap*) { return 0; }
++ SOAP_FMAC3 void SOAP_FMAC4 soap_serializefault(struct soap*) { }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_putfault(struct soap*) { return 0; }
++ SOAP_FMAC3 int SOAP_FMAC4 soap_getfault(struct soap*) { return 0; }
+ int
+ main ()
+ {
+-magic_t m = magic_open(17);
++soap s;
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_magic=yes
++ ncbi_cv_lib_gsoap=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_magic=no
++ ncbi_cv_lib_gsoap=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_magic" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_magic" >&6
+- if test "$ncbi_cv_lib_magic" = "no"; then
+- if test "${with_magic:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-magic explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-magic explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gsoap" >&5
++echo "${ECHO_T}$ncbi_cv_lib_gsoap" >&6; }
++ if test "$ncbi_cv_lib_gsoap" = "no"; then
++ if test "${with_gsoap:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-gsoap explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-gsoap explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_magic" = "no"; then
+- MAGIC_PATH="No_MAGIC"
+- MAGIC_INCLUDE=
+- MAGIC_LIBS=
++ if test "$with_gsoap" = "no"; then
++ GSOAP_PATH="No_GSOAP"
++ GSOAP_INCLUDE=
++ GSOAP_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}MAGIC"; WithPackagesSep=" "
+- MAGIC_INCLUDE=" $MAGIC_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}GSOAP"; WithPackagesSep=" "
++ GSOAP_INCLUDE=" $GSOAP_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBMAGIC 1
++#define HAVE_LIBGSOAP 1
+ _ACEOF
+
+ fi
+@@ -33831,203 +38960,218 @@
+
+
+
+-
+-# Mimetic
+-case "$with_mimetic" in
+- yes | '' ) : ${MIMETIC_PATH=$NCBI/mimetic} ;;
+- * ) MIMETIC_PATH=$with_mimetic ;;
++case "$with_sqlite3" in
++ yes | '' ) ;;
++ * ) SQLITE3_PATH=$with_sqlite3 ;;
+ esac
+-if test -d "$MIMETIC_PATH"; then
+- ncbi_fix_dir_tmp=`if cd $MIMETIC_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
++
++
++# MongoDB
++if test -d "$MONGODB_PATH"; then
++ ncbi_fix_dir_tmp=`if cd $MONGODB_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
+ case "$ncbi_fix_dir_tmp" in
+- /.*) ncbi_fix_dir_tmp2=`cd $MIMETIC_PATH && $smart_pwd 2>/dev/null`
++ /.*) ncbi_fix_dir_tmp2=`cd $MONGODB_PATH && $smart_pwd 2>/dev/null`
+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
+- MIMETIC_PATH=$ncbi_fix_dir_tmp2
++ MONGODB_PATH=$ncbi_fix_dir_tmp2
+ else
+- case "$MIMETIC_PATH" in
++ case "$MONGODB_PATH" in
+ /*) ;;
+- * ) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
++ * ) MONGODB_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+ ;;
+- /*) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
++ /*) MONGODB_PATH=$ncbi_fix_dir_tmp ;;
+ esac
+ fi
+-for d in "$MIMETIC_LIBDIR" \
+- "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib" \
+- "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib" \
+- "$MIMETIC_PATH/lib${bit64_sfx}" \
+- "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}/lib" \
+- "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}/lib" \
+- "$MIMETIC_PATH/lib"; do
+- if test -d "$d"; then
+- MIMETIC_LIBDIR=$d
+- break
++if test -d $MONGODB_PATH/lib${bit64_sfx}; then
++ MONGODB_LIBDIR=$MONGODB_PATH/lib${bit64_sfx}
++else
++ MONGODB_LIBDIR=$MONGODB_PATH/lib
+ fi
+-done
++# need Boost rpath
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $MIMETIC_LIBDIR; do
++ for x in $MONGODB_LIBDIR; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
++ MONGODB_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $MIMETIC_LIBDIR; do
++ for x in $MONGODB_LIBDIR; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ MONGODB_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+-
+-if test "$with_mimetic" != "no"; then
+- case "$with_mimetic" in
++if test "$with_mongodb" != "no"; then
++ case "$with_mongodb" in
+ yes | "" ) ;;
+- * ) MIMETIC_PATH=$with_mimetic ;;
++ * ) MONGODB_PATH=$with_mongodb ;;
+ esac
+- if test -d "$MIMETIC_PATH"; then
+- in_path=" in $MIMETIC_PATH"
+- if test -z "$MIMETIC_INCLUDE" -a -d "$MIMETIC_PATH/include"; then
+- MIMETIC_INCLUDE="-I$MIMETIC_PATH/include"
++ if test -d "$MONGODB_PATH"; then
++ in_path=" in $MONGODB_PATH"
++ if test -z "$MONGODB_INCLUDE" -a -d "$MONGODB_PATH/include"; then
++ MONGODB_INCLUDE="-I$MONGODB_PATH/include"
+ fi
+- if test -n "$MIMETIC_LIBPATH"; then
++ if test -n "$MONGODB_LIBPATH"; then
+ :
+- elif test -d "$MIMETIC_PATH/lib${bit64_sfx}"; then
++ elif test -d "$MONGODB_PATH/lib${bit64_sfx}"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $MIMETIC_PATH/lib${bit64_sfx}; do
++ for x in $MONGODB_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
++ MONGODB_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $MIMETIC_PATH/lib${bit64_sfx}; do
++ for x in $MONGODB_PATH/lib${bit64_sfx}; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ MONGODB_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+- elif test -d "$MIMETIC_PATH/lib"; then
++ elif test -d "$MONGODB_PATH/lib"; then
+ ncbi_rp_L_flags=
+ ncbi_rp_L_sep=$CONF_f_libpath
+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
+- for x in $MIMETIC_PATH/lib; do
++ for x in $MONGODB_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ done
+- MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
++ MONGODB_LIBPATH="${ncbi_rp_L_flags}"
+ else
+ ncbi_rp_R_flags=
+ ncbi_rp_R_sep=" $CONF_f_runpath"
+- for x in $MIMETIC_PATH/lib; do
++ for x in $MONGODB_PATH/lib; do
+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
+ ncbi_rp_L_sep=" $CONF_f_libpath"
+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
+ ncbi_rp_R_sep=:
+ done
+- MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
++ MONGODB_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
+ fi
+ fi
+- MIMETIC_LIBS="$MIMETIC_LIBPATH -lmimetic "
++ MONGODB_LIBS="$MONGODB_LIBPATH -lmongoclient $BOOST_LIBPATH $boost_fs_lib $BOOST_THREAD_LIBS"
+ else
+- MIMETIC_INCLUDE=""
+- MIMETIC_LIBS="-lmimetic "
++ MONGODB_INCLUDE=""
++ MONGODB_LIBS="-lmongoclient $BOOST_LIBPATH $boost_fs_lib $BOOST_THREAD_LIBS"
+ in_path=
+ fi
+- echo "$as_me:$LINENO: checking for libmimetic$in_path" >&5
+-echo $ECHO_N "checking for libmimetic$in_path... $ECHO_C" >&6
+-if test "${ncbi_cv_lib_mimetic+set}" = set; then
++ { echo "$as_me:$LINENO: checking for libmongoclient$in_path" >&5
++echo $ECHO_N "checking for libmongoclient$in_path... $ECHO_C" >&6; }
++if test "${ncbi_cv_lib_mongodb+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+ else
+- CPPFLAGS=" $MIMETIC_INCLUDE $orig_CPPFLAGS"
+- LIBS="$MIMETIC_LIBS $orig_LIBS"
++ CPPFLAGS="$BOOST_INCLUDE $MONGODB_INCLUDE $orig_CPPFLAGS"
++ LIBS="$MONGODB_LIBS $orig_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+ _ACEOF
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h. */
+-#include <mimetic/mimetic.h>
++#include <mongo/client/dbclient.h>
+ int
+ main ()
+ {
+-mimetic::MimeEntity me;
++std::vector<mongo::HostAndPort> v;
++ mongo::DBClientReplicaSet client("foo", v);
++ client.connect();
+ ;
+ return 0;
+ }
+ _ACEOF
+ rm -f conftest.$ac_objext conftest$ac_exeext
+-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+- (eval $ac_link) 2>conftest.er1
++if { (ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; } &&
+ { ac_try='test -s conftest$ac_exeext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
++ { (case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
++ (eval "$ac_try") 2>&5
+ ac_status=$?
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+- ncbi_cv_lib_mimetic=yes
++ ncbi_cv_lib_mongodb=yes
+ else
+ echo "$as_me: failed program was:" >&5
+ sed 's/^/| /' conftest.$ac_ext >&5
+
+-ncbi_cv_lib_mimetic=no
++ ncbi_cv_lib_mongodb=no
+ fi
+-rm -f conftest.err conftest.$ac_objext \
++
++rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_lib_mimetic" >&5
+-echo "${ECHO_T}$ncbi_cv_lib_mimetic" >&6
+- if test "$ncbi_cv_lib_mimetic" = "no"; then
+- if test "${with_mimetic:=no}" != no; then
+- { { echo "$as_me:$LINENO: error: --with-mimetic explicitly specified, but no usable version found." >&5
+-echo "$as_me: error: --with-mimetic explicitly specified, but no usable version found." >&2;}
++{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_mongodb" >&5
++echo "${ECHO_T}$ncbi_cv_lib_mongodb" >&6; }
++ if test "$ncbi_cv_lib_mongodb" = "no"; then
++ if test "${with_mongodb:=no}" != no; then
++ { { echo "$as_me:$LINENO: error: --with-mongodb explicitly specified, but no usable version found." >&5
++echo "$as_me: error: --with-mongodb explicitly specified, but no usable version found." >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+ fi
+- if test "$with_mimetic" = "no"; then
+- MIMETIC_PATH="No_MIMETIC"
+- MIMETIC_INCLUDE=
+- MIMETIC_LIBS=
++ if test "$with_mongodb" = "no"; then
++ MONGODB_PATH="No_MONGODB"
++ MONGODB_INCLUDE=
++ MONGODB_LIBS=
+ else
+- WithPackages="$WithPackages${WithPackagesSep}MIMETIC"; WithPackagesSep=" "
+- MIMETIC_INCLUDE=" $MIMETIC_INCLUDE"
++ WithPackages="$WithPackages${WithPackagesSep}MONGODB"; WithPackagesSep=" "
++ MONGODB_INCLUDE="$BOOST_INCLUDE $MONGODB_INCLUDE"
+
+ cat >>confdefs.h <<\_ACEOF
+-#define HAVE_LIBMIMETIC 1
++#define HAVE_LIBMONGODB 1
+ _ACEOF
+
+ fi
+
+
+
+-
++# MongoDB's own library is normally static, but its supporting Boost
++# libraries might not be by default.
++if test -n "$MONGODB_LIBS"; then
++ MONGODB_STATIC_LIBS="$MONGODB_LIBPATH -lmongodb $BOOST_LIBPATH $boost_fs_static_lib $BOOST_THREAD_STATIC_LIBS"
++else
++ MONGODB_STATIC_LIBS=
++fi
+
+ ### Restore original compiler/linker flags
+ LIBS="$orig_LIBS"
+@@ -34263,16 +39407,6 @@
+ fi
+
+
+-## Sequence Read Archive SDK, which may be attached on either the
+-## public or the internal side
+-
+-if test -f "${real_srcdir}/src/sra/sdk/Makefile.sra_macros.mk"; then
+- sra=sra
+-else
+- sra=
+-fi
+-
+-
+ ## `internal' project cluster
+
+ if test "$with_internal" = "no" \
+@@ -34445,7 +39579,7 @@
+ ;;
+ esac
+ done
+- for x in UUID FUSE Z LocalZ BZ2 LocalBZ2 LZO PCRE LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC; do
++ for x in UUID FUSE Z LocalZ BZ2 LocalBZ2 LZO PCRE LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Filesystem Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP MONGODB; do
+ case " $WithPackages " in
+ *" $x "*) ;;
+ *) WithoutPackages="$WithoutPackages$WithoutPackagesSep$x"
+@@ -34802,6 +39936,11 @@
+
+
+
++
++
++
++
++
+ #############################################################################
+ ### Create output files and do some post-configuration
+
+@@ -34852,39 +39991,58 @@
+
+ # The following way of writing the cache mishandles newlines in values,
+ # but we know of no workaround that is simple, portable, and efficient.
+-# So, don't put newlines in cache variables' values.
++# So, we kill variables containing newlines.
+ # Ultrix sh set writes to stderr and can't be redirected directly,
+ # and sets the high bit in the cache file unless we assign to the vars.
+-{
++(
++ for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
++ eval ac_val=\$$ac_var
++ case $ac_val in #(
++ *${as_nl}*)
++ case $ac_var in #(
++ *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
++echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
++ esac
++ case $ac_var in #(
++ _ | IFS | as_nl) ;; #(
++ *) $as_unset $ac_var ;;
++ esac ;;
++ esac
++ done
++
+ (set) 2>&1 |
+- case `(ac_space=' '; set | grep ac_space) 2>&1` in
+- *ac_space=\ *)
++ case $as_nl`(ac_space=' '; set) 2>&1` in #(
++ *${as_nl}ac_space=\ *)
+ # `set' does not quote correctly, so add quotes (double-quote
+ # substitution turns \\\\ into \\, and sed turns \\ into \).
+ sed -n \
+ "s/'/'\\\\''/g;
+ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
+- ;;
++ ;; #(
+ *)
+ # `set' quotes correctly as required by POSIX, so do not add quotes.
+- sed -n \
+- "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
++ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
+ ;;
+- esac;
+-} |
++ esac |
++ sort
++) |
+ sed '
++ /^ac_cv_env_/b end
+ t clear
+ : clear
+ s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
+ t end
+- /^ac_cv_env/!s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
++ s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
+ : end' >>confcache
+-if diff $cache_file confcache >/dev/null 2>&1; then :; else
+- if test -w $cache_file; then
+- test "x$cache_file" != "x/dev/null" && echo "updating cache $cache_file"
++if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
++ if test -w "$cache_file"; then
++ test "x$cache_file" != "x/dev/null" &&
++ { echo "$as_me:$LINENO: updating cache $cache_file" >&5
++echo "$as_me: updating cache $cache_file" >&6;}
+ cat confcache >$cache_file
+ else
+- echo "not updating unwritable cache $cache_file"
++ { echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5
++echo "$as_me: not updating unwritable cache $cache_file" >&6;}
+ fi
+ fi
+ rm -f confcache
+@@ -34893,32 +40051,18 @@
+ # Let make expand exec_prefix.
+ test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
+
+-# VPATH may cause trouble with some makes, so we remove $(srcdir),
+-# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
+-# trailing colons and then remove the whole line if VPATH becomes empty
+-# (actually we leave an empty line to preserve line numbers).
+-if test "x$srcdir" = x.; then
+- ac_vpsub='/^[ ]*VPATH[ ]*=/{
+-s/:*\$(srcdir):*/:/;
+-s/:*\${srcdir}:*/:/;
+-s/:*@srcdir@:*/:/;
+-s/^\([^=]*=[ ]*\):*/\1/;
+-s/:*$//;
+-s/^[^=]*=[ ]*$//;
+-}'
+-fi
+-
+ DEFS=-DHAVE_CONFIG_H
+
+ ac_libobjs=
+ ac_ltlibobjs=
+ for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
+ # 1. Remove the extension, and $U if already installed.
+- ac_i=`echo "$ac_i" |
+- sed 's/\$U\././;s/\.o$//;s/\.obj$//'`
+- # 2. Add them.
+- ac_libobjs="$ac_libobjs $ac_i\$U.$ac_objext"
+- ac_ltlibobjs="$ac_ltlibobjs $ac_i"'$U.lo'
++ ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
++ ac_i=`echo "$ac_i" | sed "$ac_script"`
++ # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
++ # will be set to the directory where LIBOBJS objects are built.
++ ac_libobjs="$ac_libobjs \${LIBOBJDIR}$ac_i\$U.$ac_objext"
++ ac_ltlibobjs="$ac_ltlibobjs \${LIBOBJDIR}$ac_i"'$U.lo'
+ done
+ LIBOBJS=$ac_libobjs
+
+@@ -34956,66 +40100,15 @@
+ # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+-elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
+- set -o posix
+-fi
+-DUALCASE=1; export DUALCASE # for MKS sh
+-
+-# Support unset when possible.
+-if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+- as_unset=unset
+-else
+- as_unset=false
+-fi
+-
+-
+-# Work around bugs in pre-3.0 UWIN ksh.
+-$as_unset ENV MAIL MAILPATH
+-PS1='$ '
+-PS2='> '
+-PS4='+ '
+-
+-# NLS nuisances.
+-for as_var in \
+- LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
+- LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
+- LC_TELEPHONE LC_TIME
+-do
+- if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
+- eval $as_var=C; export $as_var
+- else
+- $as_unset $as_var
+- fi
+-done
+-
+-# Required to use basename.
+-if expr a : '\(a\)' >/dev/null 2>&1; then
+- as_expr=expr
+-else
+- as_expr=false
+-fi
+-
+-if (basename /) >/dev/null 2>&1 && test "X`basename / 2>&1`" = "X/"; then
+- as_basename=basename
++ setopt NO_GLOB_SUBST
+ else
+- as_basename=false
++ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
+ fi
++BIN_SH=xpg4; export BIN_SH # for Tru64
++DUALCASE=1; export DUALCASE # for MKS sh
+
+
+-# Name of the executable.
+-as_me=`$as_basename "$0" ||
+-$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
+- X"$0" : 'X\(//\)$' \| \
+- X"$0" : 'X\(/\)$' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X/"$0" |
+- sed '/^.*\/\([^/][^/]*\)\/*$/{ s//\1/; q; }
+- /^X\/\(\/\/\)$/{ s//\1/; q; }
+- /^X\/\(\/\).*/{ s//\1/; q; }
+- s/.*/./; q'`
+-
+-
+-# PATH needs CR, and LINENO needs CR and PATH.
++# PATH needs CR
+ # Avoid depending upon Character Ranges.
+ as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+ as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+@@ -35036,14 +40129,24 @@
+ rm -f conf$$.sh
+ fi
+
++# Support unset when possible.
++if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
++ as_unset=unset
++else
++ as_unset=false
++fi
+
+- as_lineno_1=$LINENO
+- as_lineno_2=$LINENO
+- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
+- test "x$as_lineno_1" != "x$as_lineno_2" &&
+- test "x$as_lineno_3" = "x$as_lineno_2" || {
+- # Find who we are. Look in the path if we contain no path at all
+- # relative or not.
++
++# IFS
++# We need space, tab and new line, in precisely that order. Quoting is
++# there to prevent editors from complaining about space-tab.
++# (If _AS_PATH_WALK were called with IFS unset, it would disable word
++# splitting by setting IFS to empty value.)
++as_nl='
++'
++IFS=" "" $as_nl"
++
++# Find who we are. Look in the path if we contain no directory separator.
+ case $0 in
+ *[\\/]* ) as_myself=$0 ;;
+ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+@@ -35053,6 +40156,7 @@
+ test -z "$as_dir" && as_dir=.
+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+ done
++IFS=$as_save_IFS
+
+ ;;
+ esac
+@@ -35062,103 +40166,161 @@
+ as_myself=$0
+ fi
+ if test ! -f "$as_myself"; then
+- { { echo "$as_me:$LINENO: error: cannot find myself; rerun with an absolute path" >&5
+-echo "$as_me: error: cannot find myself; rerun with an absolute path" >&2;}
+- { (exit 1); exit 1; }; }
++ echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
++ { (exit 1); exit 1; }
+ fi
+- case $CONFIG_SHELL in
+- '')
+- $as_unset ZSH_VERSION || test "${ZSH_VERSION+set}" != set || { ZSH_VERSION=; export ZSH_VERSION; }
+- for as_base in sh ksh sh5 bash; do
+- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+-for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
++
++# Work around bugs in pre-3.0 UWIN ksh.
++for as_var in ENV MAIL MAILPATH
++do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
++done
++PS1='$ '
++PS2='> '
++PS4='+ '
++
++# NLS nuisances.
++for as_var in \
++ LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
++ LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
++ LC_TELEPHONE LC_TIME
+ do
+- IFS=$as_save_IFS
+- test -z "$as_dir" && as_dir=.
+- case $as_dir in
+- /*)
+- if ("$as_dir/$as_base" -c \
+- 'test -z "$ZSH_VERSION" && {
++ if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
++ eval $as_var=C; export $as_var
++ else
++ ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
++ fi
++done
++
++# Required to use basename.
++if expr a : '\(a\)' >/dev/null 2>&1 &&
++ test "X`expr 00001 : '.*\(...\)'`" = X001; then
++ as_expr=expr
++else
++ as_expr=false
++fi
++
++if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
++ as_basename=basename
++else
++ as_basename=false
++fi
++
++
++# Name of the executable.
++as_me=`$as_basename -- "$0" ||
++$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
++ X"$0" : 'X\(//\)$' \| \
++ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
++echo X/"$0" |
++ sed '/^.*\/\([^/][^/]*\)\/*$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\).*/{
++ s//\1/
++ q
++ }
++ s/.*/./; q'`
++
++# CDPATH.
++$as_unset CDPATH
++
++
++
+ as_lineno_1=$LINENO
+ as_lineno_2=$LINENO
+- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
+ test "x$as_lineno_1" != "x$as_lineno_2" &&
+- test "x$as_lineno_3" = "x$as_lineno_2" ; }') 2>/dev/null
+- then
+- $as_unset BASH_ENV || test "${BASH_ENV+set}" != set || { BASH_ENV=; export BASH_ENV; }
+- $as_unset ENV || test "${ENV+set}" != set || { ENV=; export ENV; }
+- CONFIG_SHELL=$as_dir/$as_base
+- export CONFIG_SHELL
+- exec "$CONFIG_SHELL" "$0" ${1+"$@"}
+- fi;;
+- esac
+- done
+-done
+-;;
+- esac
++ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
+
+ # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
+ # uniformly replaced by the line number. The first 'sed' inserts a
+- # line-number line before each line; the second 'sed' does the real
+- # work. The second script uses 'N' to pair each line-number line
+- # with the numbered line, and appends trailing '-' during
+- # substitution so that $LINENO is not a special case at line end.
++ # line-number line after each line using $LINENO; the second 'sed'
++ # does the real work. The second script uses 'N' to pair each
++ # line-number line with the line containing $LINENO, and appends
++ # trailing '-' during substitution so that $LINENO is not a special
++ # case at line end.
+ # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
+- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
+- sed '=' <$as_myself |
++ # scripts with optimization help from Paolo Bonzini. Blame Lee
++ # E. McMahon (1931-1989) for sed's syntax. :-)
++ sed -n '
++ p
++ /[$]LINENO/=
++ ' <$as_myself |
+ sed '
++ s/[$]LINENO.*/&-/
++ t lineno
++ b
++ :lineno
+ N
+- s,$,-,
+ : loop
+- s,^\(['$as_cr_digits']*\)\(.*\)[$]LINENO\([^'$as_cr_alnum'_]\),\1\2\1\3,
++ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
+ t loop
+- s,-$,,
+- s,^['$as_cr_digits']*\n,,
++ s/-\n.*//
+ ' >$as_me.lineno &&
+- chmod +x $as_me.lineno ||
+- { { echo "$as_me:$LINENO: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&5
+-echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2;}
++ chmod +x "$as_me.lineno" ||
++ { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
+ { (exit 1); exit 1; }; }
+
+ # Don't try to exec as it changes $[0], causing all sort of problems
+ # (the dirname of $[0] is not the place where we might find the
+- # original and so on. Autoconf is especially sensible to this).
+- . ./$as_me.lineno
++ # original and so on. Autoconf is especially sensitive to this).
++ . "./$as_me.lineno"
+ # Exit status is that of the last command.
+ exit
+ }
+
+
+-case `echo "testing\c"; echo 1,2,3`,`echo -n testing; echo 1,2,3` in
+- *c*,-n*) ECHO_N= ECHO_C='
+-' ECHO_T=' ' ;;
+- *c*,* ) ECHO_N=-n ECHO_C= ECHO_T= ;;
+- *) ECHO_N= ECHO_C='\c' ECHO_T= ;;
++if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
++ as_dirname=dirname
++else
++ as_dirname=false
++fi
++
++ECHO_C= ECHO_N= ECHO_T=
++case `echo -n x` in
++-n*)
++ case `echo 'x\c'` in
++ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
++ *) ECHO_C='\c';;
++ esac;;
++*)
++ ECHO_N='-n';;
+ esac
+
+-if expr a : '\(a\)' >/dev/null 2>&1; then
++if expr a : '\(a\)' >/dev/null 2>&1 &&
++ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
+ else
+ as_expr=false
+ fi
+
+ rm -f conf$$ conf$$.exe conf$$.file
++if test -d conf$$.dir; then
++ rm -f conf$$.dir/conf$$.file
++else
++ rm -f conf$$.dir
++ mkdir conf$$.dir
++fi
+ echo >conf$$.file
+ if ln -s conf$$.file conf$$ 2>/dev/null; then
+- # We could just check for DJGPP; but this test a) works b) is more generic
+- # and c) will remain valid once DJGPP supports symlinks (DJGPP 2.04).
+- if test -f conf$$.exe; then
+- # Don't use ln at all; we don't have any links
+- as_ln_s='cp -p'
+- else
+ as_ln_s='ln -s'
+- fi
++ # ... but there are two gotchas:
++ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
++ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
++ # In both cases, we have to default to `cp -p'.
++ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
++ as_ln_s='cp -p'
+ elif ln conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s=ln
+ else
+ as_ln_s='cp -p'
+ fi
+-rm -f conf$$ conf$$.exe conf$$.file
++rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
++rmdir conf$$.dir 2>/dev/null
+
+ if mkdir -p . 2>/dev/null; then
+ as_mkdir_p=:
+@@ -35167,7 +40329,19 @@
+ as_mkdir_p=false
+ fi
+
+-as_executable_p="test -f"
++# Find out whether ``test -x'' works. Don't use a zero-byte file, as
++# systems may use methods other than mode bits to determine executability.
++cat >conf$$.file <<_ASEOF
++#! /bin/sh
++exit 0
++_ASEOF
++chmod +x conf$$.file
++if test -x conf$$.file >/dev/null 2>&1; then
++ as_executable_p="test -x"
++else
++ as_executable_p=:
++fi
++rm -f conf$$.file
+
+ # Sed expression to map a string onto a valid CPP name.
+ as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+@@ -35176,31 +40350,14 @@
+ as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+
+
+-# IFS
+-# We need space, tab and new line, in precisely that order.
+-as_nl='
+-'
+-IFS=" $as_nl"
+-
+-# CDPATH.
+-$as_unset CDPATH
+-
+ exec 6>&1
+
+-# Open the log real soon, to keep \$[0] and so on meaningful, and to
++# Save the log message, to keep $[0] and so on meaningful, and to
+ # report actual input values of CONFIG_FILES etc. instead of their
+-# values after options handling. Logging --version etc. is OK.
+-exec 5>>config.log
+-{
+- echo
+- sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
+-## Running $as_me. ##
+-_ASBOX
+-} >&5
+-cat >&5 <<_CSEOF
+-
++# values after options handling.
++ac_log="
+ This file was extended by ncbi-tools++ $as_me 0.0, which was
+-generated by GNU Autoconf 2.59. Invocation command line was
++generated by GNU Autoconf 2.60. Invocation command line was
+
+ CONFIG_FILES = $CONFIG_FILES
+ CONFIG_HEADERS = $CONFIG_HEADERS
+@@ -35208,30 +40365,20 @@
+ CONFIG_COMMANDS = $CONFIG_COMMANDS
+ $ $0 $@
+
+-_CSEOF
+-echo "on `(hostname || uname -n) 2>/dev/null | sed 1q`" >&5
+-echo >&5
++on `(hostname || uname -n) 2>/dev/null | sed 1q`
++"
++
+ _ACEOF
+
++cat >>$CONFIG_STATUS <<_ACEOF
+ # Files that config.status was made for.
+-if test -n "$ac_config_files"; then
+- echo "config_files=\"$ac_config_files\"" >>$CONFIG_STATUS
+-fi
+-
+-if test -n "$ac_config_headers"; then
+- echo "config_headers=\"$ac_config_headers\"" >>$CONFIG_STATUS
+-fi
+-
+-if test -n "$ac_config_links"; then
+- echo "config_links=\"$ac_config_links\"" >>$CONFIG_STATUS
+-fi
++config_files="$ac_config_files"
++config_headers="$ac_config_headers"
++config_commands="$ac_config_commands"
+
+-if test -n "$ac_config_commands"; then
+- echo "config_commands=\"$ac_config_commands\"" >>$CONFIG_STATUS
+-fi
++_ACEOF
+
+ cat >>$CONFIG_STATUS <<\_ACEOF
+-
+ ac_cs_usage="\
+ \`$as_me' instantiates files from templates according to the
+ current configuration.
+@@ -35258,19 +40405,21 @@
+ $config_commands
+
+ Report bugs to <bug-autoconf@gnu.org>."
+-_ACEOF
+
++_ACEOF
+ cat >>$CONFIG_STATUS <<_ACEOF
+ ac_cs_version="\\
+ ncbi-tools++ config.status 0.0
+-configured by $0, generated by GNU Autoconf 2.59,
+- with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
++configured by $0, generated by GNU Autoconf 2.60,
++ with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
+
+-Copyright (C) 2003 Free Software Foundation, Inc.
++Copyright (C) 2006 Free Software Foundation, Inc.
+ This config.status script is free software; the Free Software Foundation
+ gives unlimited permission to copy, distribute and modify it."
+-srcdir=$srcdir
+-INSTALL="$INSTALL"
++
++ac_pwd='$ac_pwd'
++srcdir='$srcdir'
++INSTALL='$INSTALL'
+ _ACEOF
+
+ cat >>$CONFIG_STATUS <<\_ACEOF
+@@ -35281,39 +40430,24 @@
+ do
+ case $1 in
+ --*=*)
+- ac_option=`expr "x$1" : 'x\([^=]*\)='`
+- ac_optarg=`expr "x$1" : 'x[^=]*=\(.*\)'`
++ ac_option=`expr "X$1" : 'X\([^=]*\)='`
++ ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
+ ac_shift=:
+ ;;
+- -*)
++ *)
+ ac_option=$1
+ ac_optarg=$2
+ ac_shift=shift
+ ;;
+- *) # This is not an option, so the user has probably given explicit
+- # arguments.
+- ac_option=$1
+- ac_need_defaults=false;;
+ esac
+
+ case $ac_option in
+ # Handling of the options.
+-_ACEOF
+-cat >>$CONFIG_STATUS <<\_ACEOF
+ -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
+ ac_cs_recheck=: ;;
+- --version | --vers* | -V )
+- echo "$ac_cs_version"; exit 0 ;;
+- --he | --h)
+- # Conflict between --help and --header
+- { { echo "$as_me:$LINENO: error: ambiguous option: $1
+-Try \`$0 --help' for more information." >&5
+-echo "$as_me: error: ambiguous option: $1
+-Try \`$0 --help' for more information." >&2;}
+- { (exit 1); exit 1; }; };;
+- --help | --hel | -h )
+- echo "$ac_cs_usage"; exit 0 ;;
+- --debug | --d* | -d )
++ --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
++ echo "$ac_cs_version"; exit ;;
++ --debug | --debu | --deb | --de | --d | -d )
+ debug=: ;;
+ --file | --fil | --fi | --f )
+ $ac_shift
+@@ -35323,18 +40457,24 @@
+ $ac_shift
+ CONFIG_HEADERS="$CONFIG_HEADERS $ac_optarg"
+ ac_need_defaults=false;;
++ --he | --h)
++ # Conflict between --help and --header
++ { echo "$as_me: error: ambiguous option: $1
++Try \`$0 --help' for more information." >&2
++ { (exit 1); exit 1; }; };;
++ --help | --hel | -h )
++ echo "$ac_cs_usage"; exit ;;
+ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
+ | -silent | --silent | --silen | --sile | --sil | --si | --s)
+ ac_cs_silent=: ;;
+
+ # This is an error.
+- -*) { { echo "$as_me:$LINENO: error: unrecognized option: $1
+-Try \`$0 --help' for more information." >&5
+-echo "$as_me: error: unrecognized option: $1
+-Try \`$0 --help' for more information." >&2;}
++ -*) { echo "$as_me: error: unrecognized option: $1
++Try \`$0 --help' for more information." >&2
+ { (exit 1); exit 1; }; } ;;
+
+- *) ac_config_targets="$ac_config_targets $1" ;;
++ *) ac_config_targets="$ac_config_targets $1"
++ ac_need_defaults=false ;;
+
+ esac
+ shift
+@@ -35350,18 +40490,29 @@
+ _ACEOF
+ cat >>$CONFIG_STATUS <<_ACEOF
+ if \$ac_cs_recheck; then
+- echo "running $SHELL $0 " $ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
+- exec $SHELL $0 $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
++ echo "running CONFIG_SHELL=$SHELL $SHELL $0 "$ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
++ CONFIG_SHELL=$SHELL
++ export CONFIG_SHELL
++ exec $SHELL "$0"$ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+ fi
+
+ _ACEOF
++cat >>$CONFIG_STATUS <<\_ACEOF
++exec 5>>config.log
++{
++ echo
++ sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
++## Running $as_me. ##
++_ASBOX
++ echo "$ac_log"
++} >&5
+
++_ACEOF
+ cat >>$CONFIG_STATUS <<_ACEOF
+ #
+-# INIT-COMMANDS section.
++# INIT-COMMANDS
+ #
+
+-
+ status_dir='$status_dir'
+ builddir='$builddir'
+ build_root='$build_root'
+@@ -35391,621 +40542,902 @@
+
+ _ACEOF
+
++cat >>$CONFIG_STATUS <<\_ACEOF
++
++# Handling of arguments.
++for ac_config_target in $ac_config_targets
++do
++ case $ac_config_target in
++ "${ncbiconf}") CONFIG_HEADERS="$CONFIG_HEADERS ${ncbiconf}:src/build-system/config.h.in" ;;
++ "$configurables") CONFIG_FILES="$CONFIG_FILES $configurables" ;;
++ "$srcdir/./Makefile") CONFIG_FILES="$CONFIG_FILES $srcdir/./Makefile:src/build-system/Makefile.in.top" ;;
++ "default") CONFIG_COMMANDS="$CONFIG_COMMANDS default" ;;
++
++ *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
++echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
++ { (exit 1); exit 1; }; };;
++ esac
++done
++
++
++# If the user did not use the arguments to specify the items to instantiate,
++# then the envvar interface is used. Set only those that are not.
++# We use the long form for the default assignment because of an extremely
++# bizarre bug on SunOS 4.1.3.
++if $ac_need_defaults; then
++ test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
++ test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
++ test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
++fi
++
++# Have a temporary directory for convenience. Make it in the build tree
++# simply because there is no reason against having it here, and in addition,
++# creating and moving files from /tmp can sometimes cause problems.
++# Hook for its removal unless debugging.
++# Note that there is a small window in which the directory will not be cleaned:
++# after its creation but before its name has been assigned to `$tmp'.
++$debug ||
++{
++ tmp=
++ trap 'exit_status=$?
++ { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
++' 0
++ trap '{ (exit 1); exit 1; }' 1 2 13 15
++}
++# Create a (secure) tmp directory for tmp files.
++
++{
++ tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
++ test -n "$tmp" && test -d "$tmp"
++} ||
++{
++ tmp=./conf$$-$RANDOM
++ (umask 077 && mkdir "$tmp")
++} ||
++{
++ echo "$me: cannot create a temporary directory in ." >&2
++ { (exit 1); exit 1; }
++}
++
++#
++# Set up the sed scripts for CONFIG_FILES section.
++#
++
++# No need to generate the scripts if there are no CONFIG_FILES.
++# This happens for instance when ./config.status config.h
++if test -n "$CONFIG_FILES"; then
++
++_ACEOF
++
++
++
++ac_delim='%!_!# '
++for ac_last_try in false false false false false :; do
++ cat >conf$$subs.sed <<_ACEOF
++SHELL!$SHELL$ac_delim
++PATH_SEPARATOR!$PATH_SEPARATOR$ac_delim
++PACKAGE_NAME!$PACKAGE_NAME$ac_delim
++PACKAGE_TARNAME!$PACKAGE_TARNAME$ac_delim
++PACKAGE_VERSION!$PACKAGE_VERSION$ac_delim
++PACKAGE_STRING!$PACKAGE_STRING$ac_delim
++PACKAGE_BUGREPORT!$PACKAGE_BUGREPORT$ac_delim
++exec_prefix!$exec_prefix$ac_delim
++prefix!$prefix$ac_delim
++program_transform_name!$program_transform_name$ac_delim
++bindir!$bindir$ac_delim
++sbindir!$sbindir$ac_delim
++libexecdir!$libexecdir$ac_delim
++datarootdir!$datarootdir$ac_delim
++datadir!$datadir$ac_delim
++sysconfdir!$sysconfdir$ac_delim
++sharedstatedir!$sharedstatedir$ac_delim
++localstatedir!$localstatedir$ac_delim
++includedir!$includedir$ac_delim
++oldincludedir!$oldincludedir$ac_delim
++docdir!$docdir$ac_delim
++infodir!$infodir$ac_delim
++htmldir!$htmldir$ac_delim
++dvidir!$dvidir$ac_delim
++pdfdir!$pdfdir$ac_delim
++psdir!$psdir$ac_delim
++libdir!$libdir$ac_delim
++localedir!$localedir$ac_delim
++mandir!$mandir$ac_delim
++DEFS!$DEFS$ac_delim
++ECHO_C!$ECHO_C$ac_delim
++ECHO_N!$ECHO_N$ac_delim
++ECHO_T!$ECHO_T$ac_delim
++LIBS!$LIBS$ac_delim
++build_alias!$build_alias$ac_delim
++host_alias!$host_alias$ac_delim
++target_alias!$target_alias$ac_delim
++PROJECTS!$PROJECTS$ac_delim
++build!$build$ac_delim
++build_cpu!$build_cpu$ac_delim
++build_vendor!$build_vendor$ac_delim
++build_os!$build_os$ac_delim
++host!$host$ac_delim
++host_cpu!$host_cpu$ac_delim
++host_vendor!$host_vendor$ac_delim
++host_os!$host_os$ac_delim
++INSTALL_PROGRAM!$INSTALL_PROGRAM$ac_delim
++INSTALL_SCRIPT!$INSTALL_SCRIPT$ac_delim
++INSTALL_DATA!$INSTALL_DATA$ac_delim
++CC!$CC$ac_delim
++CFLAGS!$CFLAGS$ac_delim
++LDFLAGS!$LDFLAGS$ac_delim
++CPPFLAGS!$CPPFLAGS$ac_delim
++ac_ct_CC!$ac_ct_CC$ac_delim
++EXEEXT!$EXEEXT$ac_delim
++OBJEXT!$OBJEXT$ac_delim
++CXX!$CXX$ac_delim
++CXXFLAGS!$CXXFLAGS$ac_delim
++ac_ct_CXX!$ac_ct_CXX$ac_delim
++MT_SFX!$MT_SFX$ac_delim
++DLL!$DLL$ac_delim
++DLL_LIB_SETTING!$DLL_LIB_SETTING$ac_delim
++IF_WITH_DLL!$IF_WITH_DLL$ac_delim
++UNLESS_WITH_DLL!$UNLESS_WITH_DLL$ac_delim
++STATIC!$STATIC$ac_delim
++USUAL_AND_DLL!$USUAL_AND_DLL$ac_delim
++USUAL_AND_LIB!$USUAL_AND_LIB$ac_delim
++LN_S!$LN_S$ac_delim
++RANLIB!$RANLIB$ac_delim
++AR!$AR$ac_delim
++STRIP!$STRIP$ac_delim
++DISTCC!$DISTCC$ac_delim
++CCACHE!$CCACHE$ac_delim
++TAIL!$TAIL$ac_delim
++TOUCH!$TOUCH$ac_delim
++GREP!$GREP$ac_delim
++EGREP!$EGREP$ac_delim
++VALGRIND_PATH!$VALGRIND_PATH$ac_delim
++LDD!$LDD$ac_delim
++CXXCPP!$CXXCPP$ac_delim
++TCHECK_CL!$TCHECK_CL$ac_delim
++AMQ!$AMQ$ac_delim
++CPP!$CPP$ac_delim
++Z_INCLUDE!$Z_INCLUDE$ac_delim
++Z_LIBS!$Z_LIBS$ac_delim
++BZ2_INCLUDE!$BZ2_INCLUDE$ac_delim
++BZ2_LIBS!$BZ2_LIBS$ac_delim
++LZO_INCLUDE!$LZO_INCLUDE$ac_delim
++LZO_LIBS!$LZO_LIBS$ac_delim
++PCRE_INCLUDE!$PCRE_INCLUDE$ac_delim
++PCRE_LIBS!$PCRE_LIBS$ac_delim
++LIBGCRYPT_CONFIG!$LIBGCRYPT_CONFIG$ac_delim
++GCRYPT_INCLUDE!$GCRYPT_INCLUDE$ac_delim
++GCRYPT_LIBS!$GCRYPT_LIBS$ac_delim
++LIBGNUTLS_CONFIG!$LIBGNUTLS_CONFIG$ac_delim
++GNUTLS_INCLUDE!$GNUTLS_INCLUDE$ac_delim
++GNUTLS_LIBS!$GNUTLS_LIBS$ac_delim
++_ACEOF
++
++ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
++ break
++ elif $ac_last_try; then
++ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
++echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
++ { (exit 1); exit 1; }; }
++ else
++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
++ fi
++done
++
++ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
++if test -n "$ac_eof"; then
++ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
++ ac_eof=`expr $ac_eof + 1`
++fi
++
++cat >>$CONFIG_STATUS <<_ACEOF
++cat >"\$tmp/subs-1.sed" <<\CEOF$ac_eof
++/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
++_ACEOF
++sed '
++s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
++s/^/s,@/; s/!/@,|#_!!_#|/
++:n
++t n
++s/'"$ac_delim"'$/,g/; t
++s/$/\\/; p
++N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
++' >>$CONFIG_STATUS <conf$$subs.sed
++rm -f conf$$subs.sed
++cat >>$CONFIG_STATUS <<_ACEOF
++CEOF$ac_eof
++_ACEOF
++
++
++ac_delim='%!_!# '
++for ac_last_try in false false false false false :; do
++ cat >conf$$subs.sed <<_ACEOF
++OPENSSL_INCLUDE!$OPENSSL_INCLUDE$ac_delim
++OPENSSL_LIBS!$OPENSSL_LIBS$ac_delim
++KRB5_CONFIG!$KRB5_CONFIG$ac_delim
++KRB5_INCLUDE!$KRB5_INCLUDE$ac_delim
++KRB5_LIBS!$KRB5_LIBS$ac_delim
++CURL_INCLUDE!$CURL_INCLUDE$ac_delim
++CURL_LIBS!$CURL_LIBS$ac_delim
++FTDS64_INCLUDE!$FTDS64_INCLUDE$ac_delim
++FTDS64_LIBS!$FTDS64_LIBS$ac_delim
++FTDS64_LIB!$FTDS64_LIB$ac_delim
++FTDS64_CTLIB_INCLUDE!$FTDS64_CTLIB_INCLUDE$ac_delim
++FTDS64_CTLIB_LIBS!$FTDS64_CTLIB_LIBS$ac_delim
++FTDS64_CTLIB_LIB!$FTDS64_CTLIB_LIB$ac_delim
++FTDS_INCLUDE!$FTDS_INCLUDE$ac_delim
++FTDS_LIBS!$FTDS_LIBS$ac_delim
++FTDS_LIB!$FTDS_LIB$ac_delim
++freetds!$freetds$ac_delim
++ftds64!$ftds64$ac_delim
++mysql_config!$mysql_config$ac_delim
++PYTHON!$PYTHON$ac_delim
++PYTHON_INCLUDE!$PYTHON_INCLUDE$ac_delim
++PYTHON_LIBS!$PYTHON_LIBS$ac_delim
++PYTHON23!$PYTHON23$ac_delim
++PYTHON23_INCLUDE!$PYTHON23_INCLUDE$ac_delim
++PYTHON23_LIBS!$PYTHON23_LIBS$ac_delim
++PYTHON24!$PYTHON24$ac_delim
++PYTHON24_INCLUDE!$PYTHON24_INCLUDE$ac_delim
++PYTHON24_LIBS!$PYTHON24_LIBS$ac_delim
++PYTHON25!$PYTHON25$ac_delim
++PYTHON25_INCLUDE!$PYTHON25_INCLUDE$ac_delim
++PYTHON25_LIBS!$PYTHON25_LIBS$ac_delim
++PERL!$PERL$ac_delim
++_ACJNI_JAVAC!$_ACJNI_JAVAC$ac_delim
++XMKMF!$XMKMF$ac_delim
++X_CFLAGS!$X_CFLAGS$ac_delim
++X_PRE_LIBS!$X_PRE_LIBS$ac_delim
++X_LIBS!$X_LIBS$ac_delim
++X_EXTRA_LIBS!$X_EXTRA_LIBS$ac_delim
++wxconf!$wxconf$ac_delim
++EXPAT_INCLUDE!$EXPAT_INCLUDE$ac_delim
++EXPAT_LIBS!$EXPAT_LIBS$ac_delim
++SABLOT_INCLUDE!$SABLOT_INCLUDE$ac_delim
++SABLOT_LIBS!$SABLOT_LIBS$ac_delim
++LIBXML_INCLUDE!$LIBXML_INCLUDE$ac_delim
++LIBXML_LIBS!$LIBXML_LIBS$ac_delim
++LIBXSLT_INCLUDE!$LIBXSLT_INCLUDE$ac_delim
++LIBXSLT_LIBS!$LIBXSLT_LIBS$ac_delim
++XSLTPROC!$XSLTPROC$ac_delim
++LIBEXSLT_INCLUDE!$LIBEXSLT_INCLUDE$ac_delim
++LIBEXSLT_LIBS!$LIBEXSLT_LIBS$ac_delim
++SQLITE3_INCLUDE!$SQLITE3_INCLUDE$ac_delim
++SQLITE3_LIBS!$SQLITE3_LIBS$ac_delim
++OECHEM_INCLUDE!$OECHEM_INCLUDE$ac_delim
++OECHEM_LIBS!$OECHEM_LIBS$ac_delim
++SGE_INCLUDE!$SGE_INCLUDE$ac_delim
++SGE_LIBS!$SGE_LIBS$ac_delim
++MUPARSER_INCLUDE!$MUPARSER_INCLUDE$ac_delim
++MUPARSER_LIBS!$MUPARSER_LIBS$ac_delim
++HDF5_INCLUDE!$HDF5_INCLUDE$ac_delim
++HDF5_LIBS!$HDF5_LIBS$ac_delim
++JPEG_INCLUDE!$JPEG_INCLUDE$ac_delim
++JPEG_LIBS!$JPEG_LIBS$ac_delim
++PNG_INCLUDE!$PNG_INCLUDE$ac_delim
++PNG_LIBS!$PNG_LIBS$ac_delim
++TIFF_INCLUDE!$TIFF_INCLUDE$ac_delim
++TIFF_LIBS!$TIFF_LIBS$ac_delim
++UNGIF_INCLUDE!$UNGIF_INCLUDE$ac_delim
++UNGIF_LIBS!$UNGIF_LIBS$ac_delim
++GIF_INCLUDE!$GIF_INCLUDE$ac_delim
++GIF_LIBS!$GIF_LIBS$ac_delim
++XPM_INCLUDE!$XPM_INCLUDE$ac_delim
++XPM_LIBS!$XPM_LIBS$ac_delim
++freetype_config!$freetype_config$ac_delim
++FTGL_INCLUDE!$FTGL_INCLUDE$ac_delim
++FTGL_LIBS!$FTGL_LIBS$ac_delim
++MAGIC_INCLUDE!$MAGIC_INCLUDE$ac_delim
++MAGIC_LIBS!$MAGIC_LIBS$ac_delim
++MIMETIC_INCLUDE!$MIMETIC_INCLUDE$ac_delim
++MIMETIC_LIBS!$MIMETIC_LIBS$ac_delim
++GSOAP_SOAPCPP2!$GSOAP_SOAPCPP2$ac_delim
++GSOAP_WSDL2H!$GSOAP_WSDL2H$ac_delim
++GSOAP_INCLUDE!$GSOAP_INCLUDE$ac_delim
++GSOAP_LIBS!$GSOAP_LIBS$ac_delim
++MONGODB_INCLUDE!$MONGODB_INCLUDE$ac_delim
++MONGODB_LIBS!$MONGODB_LIBS$ac_delim
++signature!$signature$ac_delim
++build_root!$build_root$ac_delim
++top_srcdir!$top_srcdir$ac_delim
++srcdir!$srcdir$ac_delim
++status_dir!$status_dir$ac_delim
++builddir!$builddir$ac_delim
++runpath!$runpath$ac_delim
++ncbi_runpath!$ncbi_runpath$ac_delim
++c_ncbi_runpath!$c_ncbi_runpath$ac_delim
++LINK!$LINK$ac_delim
++C_LINK!$C_LINK$ac_delim
++TAIL_N!$TAIL_N$ac_delim
++_ACEOF
++
++ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
++ break
++ elif $ac_last_try; then
++ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
++echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
++ { (exit 1); exit 1; }; }
++ else
++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
++ fi
++done
++
++ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
++if test -n "$ac_eof"; then
++ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
++ ac_eof=`expr $ac_eof + 1`
++fi
++
++cat >>$CONFIG_STATUS <<_ACEOF
++cat >"\$tmp/subs-2.sed" <<\CEOF$ac_eof
++/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
++_ACEOF
++sed '
++s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
++s/^/s,@/; s/!/@,|#_!!_#|/
++:n
++t n
++s/'"$ac_delim"'$/,g/; t
++s/$/\\/; p
++N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
++' >>$CONFIG_STATUS <conf$$subs.sed
++rm -f conf$$subs.sed
++cat >>$CONFIG_STATUS <<_ACEOF
++CEOF$ac_eof
++_ACEOF
++
++
++ac_delim='%!_!# '
++for ac_last_try in false false false false false :; do
++ cat >conf$$subs.sed <<_ACEOF
++EGREP_Q!$EGREP_Q$ac_delim
++LDD_R!$LDD_R$ac_delim
++FAST_CFLAGS!$FAST_CFLAGS$ac_delim
++FAST_CXXFLAGS!$FAST_CXXFLAGS$ac_delim
++OBJCXX_CXXFLAGS!$OBJCXX_CXXFLAGS$ac_delim
++DEPFLAGS!$DEPFLAGS$ac_delim
++DEPFLAGS_POST!$DEPFLAGS_POST$ac_delim
++FAST_LDFLAGS!$FAST_LDFLAGS$ac_delim
++APP_LDFLAGS!$APP_LDFLAGS$ac_delim
++DLL_LDFLAGS!$DLL_LDFLAGS$ac_delim
++C_LIBS!$C_LIBS$ac_delim
++OBJCXX_LIBS!$OBJCXX_LIBS$ac_delim
++GCCPCH!$GCCPCH$ac_delim
++RUNPATH_ORIGIN!$RUNPATH_ORIGIN$ac_delim
++NO_STRICT_ALIASING!$NO_STRICT_ALIASING$ac_delim
++D_SFX!$D_SFX$ac_delim
++DEBUG_SFX!$DEBUG_SFX$ac_delim
++LIB_OR_DLL!$LIB_OR_DLL$ac_delim
++FORCE_STATIC_LIB!$FORCE_STATIC_LIB$ac_delim
++APP_LIB_SETTING!$APP_LIB_SETTING$ac_delim
++APP_LIBS_SETTING!$APP_LIBS_SETTING$ac_delim
++LINK_DLL!$LINK_DLL$ac_delim
++has_dll_loadable!$has_dll_loadable$ac_delim
++LINK_LOADABLE!$LINK_LOADABLE$ac_delim
++CFLAGS_DLL!$CFLAGS_DLL$ac_delim
++CXXFLAGS_DLL!$CXXFLAGS_DLL$ac_delim
++ALLOW_UNDEF!$ALLOW_UNDEF$ac_delim
++FORBID_UNDEF!$FORBID_UNDEF$ac_delim
++OPT_GROUPS!$OPT_GROUPS$ac_delim
++local_lbsm!$local_lbsm$ac_delim
++ncbi_crypt!$ncbi_crypt$ac_delim
++CONNEXT!$CONNEXT$ac_delim
++XCONNEXT!$XCONNEXT$ac_delim
++serial!$serial$ac_delim
++bdb!$bdb$ac_delim
++dbapi!$dbapi$ac_delim
++objects!$objects$ac_delim
++gui!$gui$ac_delim
++algo!$algo$ac_delim
++app!$app$ac_delim
++internal!$internal$ac_delim
++check!$check$ac_delim
++CHECK_ARG!$CHECK_ARG$ac_delim
++CHECK_TOOLS!$CHECK_TOOLS$ac_delim
++CHECK_TIMEOUT_MULT!$CHECK_TIMEOUT_MULT$ac_delim
++CHECK_OS_NAME!$CHECK_OS_NAME$ac_delim
++FEATURES!$FEATURES$ac_delim
++script_shell!$script_shell$ac_delim
++make_shell!$make_shell$ac_delim
++obj_ext!$obj_ext$ac_delim
++lib_pre!$lib_pre$ac_delim
++lib_l_pre!$lib_l_pre$ac_delim
++lib_ext!$lib_ext$ac_delim
++dll_ext!$dll_ext$ac_delim
++loadable_ext!$loadable_ext$ac_delim
++lib_l_ext!$lib_l_ext$ac_delim
++exe_ext!$exe_ext$ac_delim
++f_compile!$f_compile$ac_delim
++f_outobj!$f_outobj$ac_delim
++f_outlib!$f_outlib$ac_delim
++f_libpath!$f_libpath$ac_delim
++f_runpath!$f_runpath$ac_delim
++f_outexe!$f_outexe$ac_delim
++BDB_LIB!$BDB_LIB$ac_delim
++BDB_CACHE_LIB!$BDB_CACHE_LIB$ac_delim
++DBAPI_DRIVER!$DBAPI_DRIVER$ac_delim
++DBAPI_CTLIB!$DBAPI_CTLIB$ac_delim
++DBAPI_DBLIB!$DBAPI_DBLIB$ac_delim
++DBAPI_MYSQL!$DBAPI_MYSQL$ac_delim
++DBAPI_ODBC!$DBAPI_ODBC$ac_delim
++THREAD_LIBS!$THREAD_LIBS$ac_delim
++NCBIATOMIC_LIB!$NCBIATOMIC_LIB$ac_delim
++OPENMP_FLAGS!$OPENMP_FLAGS$ac_delim
++NETWORK_LIBS!$NETWORK_LIBS$ac_delim
++NETWORK_PURE_LIBS!$NETWORK_PURE_LIBS$ac_delim
++RESOLVER_LIBS!$RESOLVER_LIBS$ac_delim
++MATH_LIBS!$MATH_LIBS$ac_delim
++KSTAT_LIBS!$KSTAT_LIBS$ac_delim
++RPCSVC_LIBS!$RPCSVC_LIBS$ac_delim
++CRYPT_LIBS!$CRYPT_LIBS$ac_delim
++DL_LIBS!$DL_LIBS$ac_delim
++RT_LIBS!$RT_LIBS$ac_delim
++UUID_LIBS!$UUID_LIBS$ac_delim
++DEMANGLE_LIBS!$DEMANGLE_LIBS$ac_delim
++ICONV_LIBS!$ICONV_LIBS$ac_delim
++Z_LIB!$Z_LIB$ac_delim
++BZ2_LIB!$BZ2_LIB$ac_delim
++PCREPOSIX_LIBS!$PCREPOSIX_LIBS$ac_delim
++PCRE_LIB!$PCRE_LIB$ac_delim
++OPENSSL_STATIC_LIBS!$OPENSSL_STATIC_LIBS$ac_delim
++TLS_INCLUDE!$TLS_INCLUDE$ac_delim
++TLS_LIBS!$TLS_LIBS$ac_delim
++SYBASE_PATH!$SYBASE_PATH$ac_delim
++SYBASE_LCL_PATH!$SYBASE_LCL_PATH$ac_delim
++SYBASE_INCLUDE!$SYBASE_INCLUDE$ac_delim
++SYBASE_LIBS!$SYBASE_LIBS$ac_delim
++SYBASE_DLLS!$SYBASE_DLLS$ac_delim
++_ACEOF
++
++ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
++ break
++ elif $ac_last_try; then
++ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
++echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
++ { (exit 1); exit 1; }; }
++ else
++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
++ fi
++done
++
++ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
++if test -n "$ac_eof"; then
++ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
++ ac_eof=`expr $ac_eof + 1`
++fi
++
++cat >>$CONFIG_STATUS <<_ACEOF
++cat >"\$tmp/subs-3.sed" <<\CEOF$ac_eof
++/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
++_ACEOF
++sed '
++s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
++s/^/s,@/; s/!/@,|#_!!_#|/
++:n
++t n
++s/'"$ac_delim"'$/,g/; t
++s/$/\\/; p
++N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
++' >>$CONFIG_STATUS <conf$$subs.sed
++rm -f conf$$subs.sed
++cat >>$CONFIG_STATUS <<_ACEOF
++CEOF$ac_eof
++_ACEOF
++
+
++ac_delim='%!_!# '
++for ac_last_try in false false false false false :; do
++ cat >conf$$subs.sed <<_ACEOF
++SYBASE_DBLIBS!$SYBASE_DBLIBS$ac_delim
++MYSQL_INCLUDE!$MYSQL_INCLUDE$ac_delim
++MYSQL_LIBS!$MYSQL_LIBS$ac_delim
++BERKELEYDB_INCLUDE!$BERKELEYDB_INCLUDE$ac_delim
++BERKELEYDB_LIBS!$BERKELEYDB_LIBS$ac_delim
++BERKELEYDB_STATIC_LIBS!$BERKELEYDB_STATIC_LIBS$ac_delim
++BERKELEYDB_CXX_LIBS!$BERKELEYDB_CXX_LIBS$ac_delim
++BERKELEYDB_CXX_STATIC_LIBS!$BERKELEYDB_CXX_STATIC_LIBS$ac_delim
++ODBC_INCLUDE!$ODBC_INCLUDE$ac_delim
++ODBC_LIBS!$ODBC_LIBS$ac_delim
++BOOST_INCLUDE!$BOOST_INCLUDE$ac_delim
++BOOST_LIBPATH!$BOOST_LIBPATH$ac_delim
++BOOST_TAG!$BOOST_TAG$ac_delim
++BOOST_FILESYSTEM_LIBS!$BOOST_FILESYSTEM_LIBS$ac_delim
++BOOST_FILESYSTEM_STATIC_LIBS!$BOOST_FILESYSTEM_STATIC_LIBS$ac_delim
++BOOST_REGEX_LIBS!$BOOST_REGEX_LIBS$ac_delim
++BOOST_REGEX_STATIC_LIBS!$BOOST_REGEX_STATIC_LIBS$ac_delim
++BOOST_SYSTEM_LIBS!$BOOST_SYSTEM_LIBS$ac_delim
++BOOST_SYSTEM_STATIC_LIBS!$BOOST_SYSTEM_STATIC_LIBS$ac_delim
++BOOST_TEST_PEM_LIBS!$BOOST_TEST_PEM_LIBS$ac_delim
++BOOST_TEST_PEM_STATIC_LIBS!$BOOST_TEST_PEM_STATIC_LIBS$ac_delim
++BOOST_TEST_TEM_LIBS!$BOOST_TEST_TEM_LIBS$ac_delim
++BOOST_TEST_TEM_STATIC_LIBS!$BOOST_TEST_TEM_STATIC_LIBS$ac_delim
++BOOST_TEST_UTF_LIBS!$BOOST_TEST_UTF_LIBS$ac_delim
++BOOST_TEST_UTF_STATIC_LIBS!$BOOST_TEST_UTF_STATIC_LIBS$ac_delim
++BOOST_THREAD_LIBS!$BOOST_THREAD_LIBS$ac_delim
++BOOST_THREAD_STATIC_LIBS!$BOOST_THREAD_STATIC_LIBS$ac_delim
++NCBI_C_INCLUDE!$NCBI_C_INCLUDE$ac_delim
++NCBI_C_LIBPATH!$NCBI_C_LIBPATH$ac_delim
++OPENGL_INCLUDE!$OPENGL_INCLUDE$ac_delim
++OPENGL_LIBS!$OPENGL_LIBS$ac_delim
++OPENGL_STATIC_LIBS!$OPENGL_STATIC_LIBS$ac_delim
++OSMESA_INCLUDE!$OSMESA_INCLUDE$ac_delim
++OSMESA_LIBS!$OSMESA_LIBS$ac_delim
++OSMESA_STATIC_LIBS!$OSMESA_STATIC_LIBS$ac_delim
++GLUT_INCLUDE!$GLUT_INCLUDE$ac_delim
++GLUT_LIBS!$GLUT_LIBS$ac_delim
++GLEW_INCLUDE!$GLEW_INCLUDE$ac_delim
++GLEW_LIBS!$GLEW_LIBS$ac_delim
++GLEW_STATIC_LIBS!$GLEW_STATIC_LIBS$ac_delim
++WXWIDGETS_INCLUDE!$WXWIDGETS_INCLUDE$ac_delim
++WXWIDGETS_LIBS!$WXWIDGETS_LIBS$ac_delim
++WXWIDGETS_STATIC_LIBS!$WXWIDGETS_STATIC_LIBS$ac_delim
++WXWIDGETS_GL_LIBS!$WXWIDGETS_GL_LIBS$ac_delim
++WXWIDGETS_GL_STATIC_LIBS!$WXWIDGETS_GL_STATIC_LIBS$ac_delim
++WXWIDGETS_POST_LINK!$WXWIDGETS_POST_LINK$ac_delim
++FASTCGI_INCLUDE!$FASTCGI_INCLUDE$ac_delim
++FASTCGI_LIBS!$FASTCGI_LIBS$ac_delim
++FASTCGI_OBJS!$FASTCGI_OBJS$ac_delim
++NCBI_SSS_INCLUDE!$NCBI_SSS_INCLUDE$ac_delim
++NCBI_SSS_LIBPATH!$NCBI_SSS_LIBPATH$ac_delim
++LIBSSSUTILS!$LIBSSSUTILS$ac_delim
++LIBSSSDB!$LIBSSSDB$ac_delim
++sssutils!$sssutils$ac_delim
++SP_INCLUDE!$SP_INCLUDE$ac_delim
++SP_LIBS!$SP_LIBS$ac_delim
++ORBACUS_INCLUDE!$ORBACUS_INCLUDE$ac_delim
++ORBACUS_LIBPATH!$ORBACUS_LIBPATH$ac_delim
++LIBOB!$LIBOB$ac_delim
++LIBIMR!$LIBIMR$ac_delim
++ICU_CONFIG!$ICU_CONFIG$ac_delim
++ICU_INCLUDE!$ICU_INCLUDE$ac_delim
++ICU_LIBS!$ICU_LIBS$ac_delim
++ICU_STATIC_LIBS!$ICU_STATIC_LIBS$ac_delim
++EXPAT_STATIC_LIBS!$EXPAT_STATIC_LIBS$ac_delim
++SABLOT_STATIC_LIBS!$SABLOT_STATIC_LIBS$ac_delim
++LIBXML_STATIC_LIBS!$LIBXML_STATIC_LIBS$ac_delim
++LIBXSLT_STATIC_LIBS!$LIBXSLT_STATIC_LIBS$ac_delim
++LIBEXSLT_STATIC_LIBS!$LIBEXSLT_STATIC_LIBS$ac_delim
++XERCES_INCLUDE!$XERCES_INCLUDE$ac_delim
++XERCES_LIBS!$XERCES_LIBS$ac_delim
++XERCES_STATIC_LIBS!$XERCES_STATIC_LIBS$ac_delim
++XALAN_INCLUDE!$XALAN_INCLUDE$ac_delim
++XALAN_LIBS!$XALAN_LIBS$ac_delim
++XALAN_STATIC_LIBS!$XALAN_STATIC_LIBS$ac_delim
++ZORBA_INCLUDE!$ZORBA_INCLUDE$ac_delim
++ZORBA_LIBS!$ZORBA_LIBS$ac_delim
++ZORBA_STATIC_LIBS!$ZORBA_STATIC_LIBS$ac_delim
++SQLITE3_STATIC_LIBS!$SQLITE3_STATIC_LIBS$ac_delim
++FREETYPE_INCLUDE!$FREETYPE_INCLUDE$ac_delim
++FREETYPE_LIBS!$FREETYPE_LIBS$ac_delim
++GSOAP_PATH!$GSOAP_PATH$ac_delim
++MONGODB_STATIC_LIBS!$MONGODB_STATIC_LIBS$ac_delim
++ncbi_xreader_pubseqos!$ncbi_xreader_pubseqos$ac_delim
++ncbi_xreader_pubseqos2!$ncbi_xreader_pubseqos2$ac_delim
++UNLESS_PUBSEQOS!$UNLESS_PUBSEQOS$ac_delim
++PERL_INCLUDE!$PERL_INCLUDE$ac_delim
++PERL_LIBS!$PERL_LIBS$ac_delim
++JDK_PATH!$JDK_PATH$ac_delim
++JDK_INCLUDE!$JDK_INCLUDE$ac_delim
++ncbi_java!$ncbi_java$ac_delim
++NCBI_C_ncbi!$NCBI_C_ncbi$ac_delim
++BINCOPY!$BINCOPY$ac_delim
++APP_NOCOPY!$APP_NOCOPY$ac_delim
++APP_OR_NULL!$APP_OR_NULL$ac_delim
++IF_REBUILDING_LIBS!$IF_REBUILDING_LIBS$ac_delim
++IF_REBUILDING_CONDITIONALLY!$IF_REBUILDING_CONDITIONALLY$ac_delim
++_ACEOF
+
+-cat >>$CONFIG_STATUS <<\_ACEOF
+-for ac_config_target in $ac_config_targets
+-do
+- case "$ac_config_target" in
+- # Handling of arguments.
+- "$configurables" ) CONFIG_FILES="$CONFIG_FILES $configurables" ;;
+- "$srcdir/./Makefile" ) CONFIG_FILES="$CONFIG_FILES $srcdir/./Makefile:src/build-system/Makefile.in.top" ;;
+- "default" ) CONFIG_COMMANDS="$CONFIG_COMMANDS default" ;;
+- "${ncbiconf}" ) CONFIG_HEADERS="$CONFIG_HEADERS ${ncbiconf}:src/build-system/config.h.in" ;;
+- *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
+-echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
+- { (exit 1); exit 1; }; };;
+- esac
++ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
++ break
++ elif $ac_last_try; then
++ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
++echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
++ { (exit 1); exit 1; }; }
++ else
++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
++ fi
+ done
+
+-# If the user did not use the arguments to specify the items to instantiate,
+-# then the envvar interface is used. Set only those that are not.
+-# We use the long form for the default assignment because of an extremely
+-# bizarre bug on SunOS 4.1.3.
+-if $ac_need_defaults; then
+- test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
+- test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
+- test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
++ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
++if test -n "$ac_eof"; then
++ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
++ ac_eof=`expr $ac_eof + 1`
+ fi
+
+-# Have a temporary directory for convenience. Make it in the build tree
+-# simply because there is no reason to put it here, and in addition,
+-# creating and moving files from /tmp can sometimes cause problems.
+-# Create a temporary directory, and hook for its removal unless debugging.
+-$debug ||
+-{
+- trap 'exit_status=$?; rm -rf $tmp && exit $exit_status' 0
+- trap '{ (exit 1); exit 1; }' 1 2 13 15
+-}
+-
+-# Create a (secure) tmp directory for tmp files.
+-
+-{
+- tmp=`(umask 077 && mktemp -d -q "./confstatXXXXXX") 2>/dev/null` &&
+- test -n "$tmp" && test -d "$tmp"
+-} ||
+-{
+- tmp=./confstat$$-$RANDOM
+- (umask 077 && mkdir $tmp)
+-} ||
+-{
+- echo "$me: cannot create a temporary directory in ." >&2
+- { (exit 1); exit 1; }
+-}
+-
++cat >>$CONFIG_STATUS <<_ACEOF
++cat >"\$tmp/subs-4.sed" <<\CEOF$ac_eof
++/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
+ _ACEOF
+-
++sed '
++s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
++s/^/s,@/; s/!/@,|#_!!_#|/
++:n
++t n
++s/'"$ac_delim"'$/,g/; t
++s/$/\\/; p
++N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
++' >>$CONFIG_STATUS <conf$$subs.sed
++rm -f conf$$subs.sed
+ cat >>$CONFIG_STATUS <<_ACEOF
++CEOF$ac_eof
++_ACEOF
+
+-#
+-# CONFIG_FILES section.
+-#
+-
+-# No need to generate the scripts if there are no CONFIG_FILES.
+-# This happens for instance when ./config.status config.h
+-if test -n "\$CONFIG_FILES"; then
+- # Protect against being on the right side of a sed subst in config.status.
+- sed 's/,@/@@/; s/@,/@@/; s/,;t t\$/@;t t/; /@;t t\$/s/[\\\\&,]/\\\\&/g;
+- s/@@/,@/; s/@@/@,/; s/@;t t\$/,;t t/' >\$tmp/subs.sed <<\\CEOF
+-s,@SHELL@,$SHELL,;t t
+-s,@PATH_SEPARATOR@,$PATH_SEPARATOR,;t t
+-s,@PACKAGE_NAME@,$PACKAGE_NAME,;t t
+-s,@PACKAGE_TARNAME@,$PACKAGE_TARNAME,;t t
+-s,@PACKAGE_VERSION@,$PACKAGE_VERSION,;t t
+-s,@PACKAGE_STRING@,$PACKAGE_STRING,;t t
+-s,@PACKAGE_BUGREPORT@,$PACKAGE_BUGREPORT,;t t
+-s,@exec_prefix@,$exec_prefix,;t t
+-s,@prefix@,$prefix,;t t
+-s,@program_transform_name@,$program_transform_name,;t t
+-s,@bindir@,$bindir,;t t
+-s,@sbindir@,$sbindir,;t t
+-s,@libexecdir@,$libexecdir,;t t
+-s,@datadir@,$datadir,;t t
+-s,@sysconfdir@,$sysconfdir,;t t
+-s,@sharedstatedir@,$sharedstatedir,;t t
+-s,@localstatedir@,$localstatedir,;t t
+-s,@libdir@,$libdir,;t t
+-s,@includedir@,$includedir,;t t
+-s,@oldincludedir@,$oldincludedir,;t t
+-s,@infodir@,$infodir,;t t
+-s,@mandir@,$mandir,;t t
+-s,@build_alias@,$build_alias,;t t
+-s,@host_alias@,$host_alias,;t t
+-s,@target_alias@,$target_alias,;t t
+-s,@DEFS@,$DEFS,;t t
+-s,@ECHO_C@,$ECHO_C,;t t
+-s,@ECHO_N@,$ECHO_N,;t t
+-s,@ECHO_T@,$ECHO_T,;t t
+-s,@LIBS@,$LIBS,;t t
+-s,@PROJECTS@,$PROJECTS,;t t
+-s,@build@,$build,;t t
+-s,@build_cpu@,$build_cpu,;t t
+-s,@build_vendor@,$build_vendor,;t t
+-s,@build_os@,$build_os,;t t
+-s,@host@,$host,;t t
+-s,@host_cpu@,$host_cpu,;t t
+-s,@host_vendor@,$host_vendor,;t t
+-s,@host_os@,$host_os,;t t
+-s,@INSTALL_PROGRAM@,$INSTALL_PROGRAM,;t t
+-s,@INSTALL_SCRIPT@,$INSTALL_SCRIPT,;t t
+-s,@INSTALL_DATA@,$INSTALL_DATA,;t t
+-s,@CC@,$CC,;t t
+-s,@CFLAGS@,$CFLAGS,;t t
+-s,@LDFLAGS@,$LDFLAGS,;t t
+-s,@CPPFLAGS@,$CPPFLAGS,;t t
+-s,@ac_ct_CC@,$ac_ct_CC,;t t
+-s,@EXEEXT@,$EXEEXT,;t t
+-s,@OBJEXT@,$OBJEXT,;t t
+-s,@CXX@,$CXX,;t t
+-s,@CXXFLAGS@,$CXXFLAGS,;t t
+-s,@ac_ct_CXX@,$ac_ct_CXX,;t t
+-s,@MT_SFX@,$MT_SFX,;t t
+-s,@DLL@,$DLL,;t t
+-s,@DLL_LIB_SETTING@,$DLL_LIB_SETTING,;t t
+-s,@IF_WITH_DLL@,$IF_WITH_DLL,;t t
+-s,@UNLESS_WITH_DLL@,$UNLESS_WITH_DLL,;t t
+-s,@STATIC@,$STATIC,;t t
+-s,@USUAL_AND_DLL@,$USUAL_AND_DLL,;t t
+-s,@USUAL_AND_LIB@,$USUAL_AND_LIB,;t t
+-s,@LN_S@,$LN_S,;t t
+-s,@RANLIB@,$RANLIB,;t t
+-s,@ac_ct_RANLIB@,$ac_ct_RANLIB,;t t
+-s,@AR@,$AR,;t t
+-s,@STRIP@,$STRIP,;t t
+-s,@DISTCC@,$DISTCC,;t t
+-s,@CCACHE@,$CCACHE,;t t
+-s,@TAIL@,$TAIL,;t t
+-s,@TOUCH@,$TOUCH,;t t
+-s,@EGREP@,$EGREP,;t t
+-s,@VALGRIND_PATH@,$VALGRIND_PATH,;t t
+-s,@CXXCPP@,$CXXCPP,;t t
+-s,@TCHECK_CL@,$TCHECK_CL,;t t
+-s,@AMQ@,$AMQ,;t t
+-s,@CPP@,$CPP,;t t
+-s,@Z_INCLUDE@,$Z_INCLUDE,;t t
+-s,@Z_LIBS@,$Z_LIBS,;t t
+-s,@BZ2_INCLUDE@,$BZ2_INCLUDE,;t t
+-s,@BZ2_LIBS@,$BZ2_LIBS,;t t
+-s,@LZO_INCLUDE@,$LZO_INCLUDE,;t t
+-s,@LZO_LIBS@,$LZO_LIBS,;t t
+-s,@PCRE_INCLUDE@,$PCRE_INCLUDE,;t t
+-s,@PCRE_LIBS@,$PCRE_LIBS,;t t
+-s,@LIBGCRYPT_CONFIG@,$LIBGCRYPT_CONFIG,;t t
+-s,@GCRYPT_INCLUDE@,$GCRYPT_INCLUDE,;t t
+-s,@GCRYPT_LIBS@,$GCRYPT_LIBS,;t t
+-s,@LIBGNUTLS_CONFIG@,$LIBGNUTLS_CONFIG,;t t
+-s,@GNUTLS_INCLUDE@,$GNUTLS_INCLUDE,;t t
+-s,@GNUTLS_LIBS@,$GNUTLS_LIBS,;t t
+-s,@OPENSSL_INCLUDE@,$OPENSSL_INCLUDE,;t t
+-s,@OPENSSL_LIBS@,$OPENSSL_LIBS,;t t
+-s,@KRB5_CONFIG@,$KRB5_CONFIG,;t t
+-s,@KRB5_INCLUDE@,$KRB5_INCLUDE,;t t
+-s,@KRB5_LIBS@,$KRB5_LIBS,;t t
+-s,@CURL_INCLUDE@,$CURL_INCLUDE,;t t
+-s,@CURL_LIBS@,$CURL_LIBS,;t t
+-s,@FTDS64_INCLUDE@,$FTDS64_INCLUDE,;t t
+-s,@FTDS64_LIBS@,$FTDS64_LIBS,;t t
+-s,@FTDS64_LIB@,$FTDS64_LIB,;t t
+-s,@FTDS64_CTLIB_INCLUDE@,$FTDS64_CTLIB_INCLUDE,;t t
+-s,@FTDS64_CTLIB_LIBS@,$FTDS64_CTLIB_LIBS,;t t
+-s,@FTDS64_CTLIB_LIB@,$FTDS64_CTLIB_LIB,;t t
+-s,@FTDS_INCLUDE@,$FTDS_INCLUDE,;t t
+-s,@FTDS_LIBS@,$FTDS_LIBS,;t t
+-s,@FTDS_LIB@,$FTDS_LIB,;t t
+-s,@freetds@,$freetds,;t t
+-s,@ftds64@,$ftds64,;t t
+-s,@mysql_config@,$mysql_config,;t t
+-s,@PYTHON@,$PYTHON,;t t
+-s,@PYTHON_INCLUDE@,$PYTHON_INCLUDE,;t t
+-s,@PYTHON_LIBS@,$PYTHON_LIBS,;t t
+-s,@PYTHON23@,$PYTHON23,;t t
+-s,@PYTHON23_INCLUDE@,$PYTHON23_INCLUDE,;t t
+-s,@PYTHON23_LIBS@,$PYTHON23_LIBS,;t t
+-s,@PYTHON24@,$PYTHON24,;t t
+-s,@PYTHON24_INCLUDE@,$PYTHON24_INCLUDE,;t t
+-s,@PYTHON24_LIBS@,$PYTHON24_LIBS,;t t
+-s,@PYTHON25@,$PYTHON25,;t t
+-s,@PYTHON25_INCLUDE@,$PYTHON25_INCLUDE,;t t
+-s,@PYTHON25_LIBS@,$PYTHON25_LIBS,;t t
+-s,@PERL@,$PERL,;t t
+-s,@_ACJNI_JAVAC@,$_ACJNI_JAVAC,;t t
+-s,@X_CFLAGS@,$X_CFLAGS,;t t
+-s,@X_PRE_LIBS@,$X_PRE_LIBS,;t t
+-s,@X_LIBS@,$X_LIBS,;t t
+-s,@X_EXTRA_LIBS@,$X_EXTRA_LIBS,;t t
+-s,@wxconf@,$wxconf,;t t
+-s,@EXPAT_INCLUDE@,$EXPAT_INCLUDE,;t t
+-s,@EXPAT_LIBS@,$EXPAT_LIBS,;t t
+-s,@SABLOT_INCLUDE@,$SABLOT_INCLUDE,;t t
+-s,@SABLOT_LIBS@,$SABLOT_LIBS,;t t
+-s,@LIBXML_INCLUDE@,$LIBXML_INCLUDE,;t t
+-s,@LIBXML_LIBS@,$LIBXML_LIBS,;t t
+-s,@LIBXSLT_INCLUDE@,$LIBXSLT_INCLUDE,;t t
+-s,@LIBXSLT_LIBS@,$LIBXSLT_LIBS,;t t
+-s,@XSLTPROC@,$XSLTPROC,;t t
+-s,@LIBEXSLT_INCLUDE@,$LIBEXSLT_INCLUDE,;t t
+-s,@LIBEXSLT_LIBS@,$LIBEXSLT_LIBS,;t t
+-s,@SQLITE3_INCLUDE@,$SQLITE3_INCLUDE,;t t
+-s,@SQLITE3_LIBS@,$SQLITE3_LIBS,;t t
+-s,@OECHEM_INCLUDE@,$OECHEM_INCLUDE,;t t
+-s,@OECHEM_LIBS@,$OECHEM_LIBS,;t t
+-s,@SGE_INCLUDE@,$SGE_INCLUDE,;t t
+-s,@SGE_LIBS@,$SGE_LIBS,;t t
+-s,@MUPARSER_INCLUDE@,$MUPARSER_INCLUDE,;t t
+-s,@MUPARSER_LIBS@,$MUPARSER_LIBS,;t t
+-s,@HDF5_INCLUDE@,$HDF5_INCLUDE,;t t
+-s,@HDF5_LIBS@,$HDF5_LIBS,;t t
+-s,@JPEG_INCLUDE@,$JPEG_INCLUDE,;t t
+-s,@JPEG_LIBS@,$JPEG_LIBS,;t t
+-s,@PNG_INCLUDE@,$PNG_INCLUDE,;t t
+-s,@PNG_LIBS@,$PNG_LIBS,;t t
+-s,@TIFF_INCLUDE@,$TIFF_INCLUDE,;t t
+-s,@TIFF_LIBS@,$TIFF_LIBS,;t t
+-s,@UNGIF_INCLUDE@,$UNGIF_INCLUDE,;t t
+-s,@UNGIF_LIBS@,$UNGIF_LIBS,;t t
+-s,@GIF_INCLUDE@,$GIF_INCLUDE,;t t
+-s,@GIF_LIBS@,$GIF_LIBS,;t t
+-s,@XPM_INCLUDE@,$XPM_INCLUDE,;t t
+-s,@XPM_LIBS@,$XPM_LIBS,;t t
+-s,@freetype_config@,$freetype_config,;t t
+-s,@FTGL_INCLUDE@,$FTGL_INCLUDE,;t t
+-s,@FTGL_LIBS@,$FTGL_LIBS,;t t
+-s,@MAGIC_INCLUDE@,$MAGIC_INCLUDE,;t t
+-s,@MAGIC_LIBS@,$MAGIC_LIBS,;t t
+-s,@MIMETIC_INCLUDE@,$MIMETIC_INCLUDE,;t t
+-s,@MIMETIC_LIBS@,$MIMETIC_LIBS,;t t
+-s,@signature@,$signature,;t t
+-s,@build_root@,$build_root,;t t
+-s,@top_srcdir@,$top_srcdir,;t t
+-s,@srcdir@,$srcdir,;t t
+-s,@status_dir@,$status_dir,;t t
+-s,@builddir@,$builddir,;t t
+-s,@runpath@,$runpath,;t t
+-s,@ncbi_runpath@,$ncbi_runpath,;t t
+-s,@c_ncbi_runpath@,$c_ncbi_runpath,;t t
+-s,@LINK@,$LINK,;t t
+-s,@C_LINK@,$C_LINK,;t t
+-s,@TAIL_N@,$TAIL_N,;t t
+-s,@EGREP_Q@,$EGREP_Q,;t t
+-s,@FAST_CFLAGS@,$FAST_CFLAGS,;t t
+-s,@FAST_CXXFLAGS@,$FAST_CXXFLAGS,;t t
+-s,@OBJCXX_CXXFLAGS@,$OBJCXX_CXXFLAGS,;t t
+-s,@DEPFLAGS@,$DEPFLAGS,;t t
+-s,@DEPFLAGS_POST@,$DEPFLAGS_POST,;t t
+-s,@FAST_LDFLAGS@,$FAST_LDFLAGS,;t t
+-s,@APP_LDFLAGS@,$APP_LDFLAGS,;t t
+-s,@DLL_LDFLAGS@,$DLL_LDFLAGS,;t t
+-s,@C_LIBS@,$C_LIBS,;t t
+-s,@OBJCXX_LIBS@,$OBJCXX_LIBS,;t t
+-s,@GCCPCH@,$GCCPCH,;t t
+-s,@RUNPATH_ORIGIN@,$RUNPATH_ORIGIN,;t t
+-s,@NO_STRICT_ALIASING@,$NO_STRICT_ALIASING,;t t
+-s,@D_SFX@,$D_SFX,;t t
+-s,@DEBUG_SFX@,$DEBUG_SFX,;t t
+-s,@LIB_OR_DLL@,$LIB_OR_DLL,;t t
+-s,@FORCE_STATIC_LIB@,$FORCE_STATIC_LIB,;t t
+-s,@APP_LIB_SETTING@,$APP_LIB_SETTING,;t t
+-s,@APP_LIBS_SETTING@,$APP_LIBS_SETTING,;t t
+-s,@LINK_DLL@,$LINK_DLL,;t t
+-s,@has_dll_loadable@,$has_dll_loadable,;t t
+-s,@LINK_LOADABLE@,$LINK_LOADABLE,;t t
+-s,@CFLAGS_DLL@,$CFLAGS_DLL,;t t
+-s,@CXXFLAGS_DLL@,$CXXFLAGS_DLL,;t t
+-s,@ALLOW_UNDEF@,$ALLOW_UNDEF,;t t
+-s,@FORBID_UNDEF@,$FORBID_UNDEF,;t t
+-s,@OPT_GROUPS@,$OPT_GROUPS,;t t
+-s,@local_lbsm@,$local_lbsm,;t t
+-s,@ncbi_crypt@,$ncbi_crypt,;t t
+-s,@CONNEXT@,$CONNEXT,;t t
+-s,@XCONNEXT@,$XCONNEXT,;t t
+-s,@serial@,$serial,;t t
+-s,@bdb@,$bdb,;t t
+-s,@dbapi@,$dbapi,;t t
+-s,@objects@,$objects,;t t
+-s,@gui@,$gui,;t t
+-s,@algo@,$algo,;t t
+-s,@app@,$app,;t t
+-s,@internal@,$internal,;t t
+-s,@sra@,$sra,;t t
+-s,@check@,$check,;t t
+-s,@CHECK_ARG@,$CHECK_ARG,;t t
+-s,@CHECK_TOOLS@,$CHECK_TOOLS,;t t
+-s,@CHECK_TIMEOUT_MULT@,$CHECK_TIMEOUT_MULT,;t t
+-s,@CHECK_OS_NAME@,$CHECK_OS_NAME,;t t
+-s,@FEATURES@,$FEATURES,;t t
+-s,@script_shell@,$script_shell,;t t
+-s,@make_shell@,$make_shell,;t t
+-s,@obj_ext@,$obj_ext,;t t
+-s,@lib_pre@,$lib_pre,;t t
+-s,@lib_l_pre@,$lib_l_pre,;t t
+-s,@lib_ext@,$lib_ext,;t t
+-s,@dll_ext@,$dll_ext,;t t
+-s,@loadable_ext@,$loadable_ext,;t t
+-s,@lib_l_ext@,$lib_l_ext,;t t
+-s,@exe_ext@,$exe_ext,;t t
+-s,@f_compile@,$f_compile,;t t
+-s,@f_outobj@,$f_outobj,;t t
+-s,@f_outlib@,$f_outlib,;t t
+-s,@f_libpath@,$f_libpath,;t t
+-s,@f_runpath@,$f_runpath,;t t
+-s,@f_outexe@,$f_outexe,;t t
+-s,@BDB_LIB@,$BDB_LIB,;t t
+-s,@BDB_CACHE_LIB@,$BDB_CACHE_LIB,;t t
+-s,@DBAPI_DRIVER@,$DBAPI_DRIVER,;t t
+-s,@DBAPI_CTLIB@,$DBAPI_CTLIB,;t t
+-s,@DBAPI_DBLIB@,$DBAPI_DBLIB,;t t
+-s,@DBAPI_MYSQL@,$DBAPI_MYSQL,;t t
+-s,@DBAPI_ODBC@,$DBAPI_ODBC,;t t
+-s,@THREAD_LIBS@,$THREAD_LIBS,;t t
+-s,@NCBIATOMIC_LIB@,$NCBIATOMIC_LIB,;t t
+-s,@NETWORK_LIBS@,$NETWORK_LIBS,;t t
+-s,@NETWORK_PURE_LIBS@,$NETWORK_PURE_LIBS,;t t
+-s,@RESOLVER_LIBS@,$RESOLVER_LIBS,;t t
+-s,@MATH_LIBS@,$MATH_LIBS,;t t
+-s,@KSTAT_LIBS@,$KSTAT_LIBS,;t t
+-s,@RPCSVC_LIBS@,$RPCSVC_LIBS,;t t
+-s,@CRYPT_LIBS@,$CRYPT_LIBS,;t t
+-s,@DL_LIBS@,$DL_LIBS,;t t
+-s,@RT_LIBS@,$RT_LIBS,;t t
+-s,@UUID_LIBS@,$UUID_LIBS,;t t
+-s,@DEMANGLE_LIBS@,$DEMANGLE_LIBS,;t t
+-s,@ICONV_LIBS@,$ICONV_LIBS,;t t
+-s,@Z_LIB@,$Z_LIB,;t t
+-s,@BZ2_LIB@,$BZ2_LIB,;t t
+-s,@PCREPOSIX_LIBS@,$PCREPOSIX_LIBS,;t t
+-s,@PCRE_LIB@,$PCRE_LIB,;t t
+-s,@OPENSSL_STATIC_LIBS@,$OPENSSL_STATIC_LIBS,;t t
+-s,@TLS_INCLUDE@,$TLS_INCLUDE,;t t
+-s,@TLS_LIBS@,$TLS_LIBS,;t t
+-s,@SYBASE_PATH@,$SYBASE_PATH,;t t
+-s,@SYBASE_LCL_PATH@,$SYBASE_LCL_PATH,;t t
+-s,@SYBASE_INCLUDE@,$SYBASE_INCLUDE,;t t
+-s,@SYBASE_LIBS@,$SYBASE_LIBS,;t t
+-s,@SYBASE_DLLS@,$SYBASE_DLLS,;t t
+-s,@SYBASE_DBLIBS@,$SYBASE_DBLIBS,;t t
+-s,@MYSQL_INCLUDE@,$MYSQL_INCLUDE,;t t
+-s,@MYSQL_LIBS@,$MYSQL_LIBS,;t t
+-s,@BERKELEYDB_INCLUDE@,$BERKELEYDB_INCLUDE,;t t
+-s,@BERKELEYDB_LIBS@,$BERKELEYDB_LIBS,;t t
+-s,@BERKELEYDB_STATIC_LIBS@,$BERKELEYDB_STATIC_LIBS,;t t
+-s,@BERKELEYDB_CXX_LIBS@,$BERKELEYDB_CXX_LIBS,;t t
+-s,@BERKELEYDB_CXX_STATIC_LIBS@,$BERKELEYDB_CXX_STATIC_LIBS,;t t
+-s,@ODBC_INCLUDE@,$ODBC_INCLUDE,;t t
+-s,@ODBC_LIBS@,$ODBC_LIBS,;t t
+-s,@BOOST_INCLUDE@,$BOOST_INCLUDE,;t t
+-s,@BOOST_LIBPATH@,$BOOST_LIBPATH,;t t
+-s,@BOOST_TAG@,$BOOST_TAG,;t t
+-s,@BOOST_REGEX_LIBS@,$BOOST_REGEX_LIBS,;t t
+-s,@BOOST_REGEX_STATIC_LIBS@,$BOOST_REGEX_STATIC_LIBS,;t t
+-s,@BOOST_SYSTEM_LIBS@,$BOOST_SYSTEM_LIBS,;t t
+-s,@BOOST_SYSTEM_STATIC_LIBS@,$BOOST_SYSTEM_STATIC_LIBS,;t t
+-s,@BOOST_TEST_PEM_LIBS@,$BOOST_TEST_PEM_LIBS,;t t
+-s,@BOOST_TEST_PEM_STATIC_LIBS@,$BOOST_TEST_PEM_STATIC_LIBS,;t t
+-s,@BOOST_TEST_TEM_LIBS@,$BOOST_TEST_TEM_LIBS,;t t
+-s,@BOOST_TEST_TEM_STATIC_LIBS@,$BOOST_TEST_TEM_STATIC_LIBS,;t t
+-s,@BOOST_TEST_UTF_LIBS@,$BOOST_TEST_UTF_LIBS,;t t
+-s,@BOOST_TEST_UTF_STATIC_LIBS@,$BOOST_TEST_UTF_STATIC_LIBS,;t t
+-s,@BOOST_THREAD_LIBS@,$BOOST_THREAD_LIBS,;t t
+-s,@BOOST_THREAD_STATIC_LIBS@,$BOOST_THREAD_STATIC_LIBS,;t t
+-s,@NCBI_C_INCLUDE@,$NCBI_C_INCLUDE,;t t
+-s,@NCBI_C_LIBPATH@,$NCBI_C_LIBPATH,;t t
+-s,@OPENGL_INCLUDE@,$OPENGL_INCLUDE,;t t
+-s,@OPENGL_LIBS@,$OPENGL_LIBS,;t t
+-s,@OPENGL_STATIC_LIBS@,$OPENGL_STATIC_LIBS,;t t
+-s,@OSMESA_INCLUDE@,$OSMESA_INCLUDE,;t t
+-s,@OSMESA_LIBS@,$OSMESA_LIBS,;t t
+-s,@OSMESA_STATIC_LIBS@,$OSMESA_STATIC_LIBS,;t t
+-s,@GLUT_INCLUDE@,$GLUT_INCLUDE,;t t
+-s,@GLUT_LIBS@,$GLUT_LIBS,;t t
+-s,@GLEW_INCLUDE@,$GLEW_INCLUDE,;t t
+-s,@GLEW_LIBS@,$GLEW_LIBS,;t t
+-s,@GLEW_STATIC_LIBS@,$GLEW_STATIC_LIBS,;t t
+-s,@WXWIDGETS_INCLUDE@,$WXWIDGETS_INCLUDE,;t t
+-s,@WXWIDGETS_LIBS@,$WXWIDGETS_LIBS,;t t
+-s,@WXWIDGETS_STATIC_LIBS@,$WXWIDGETS_STATIC_LIBS,;t t
+-s,@WXWIDGETS_GL_LIBS@,$WXWIDGETS_GL_LIBS,;t t
+-s,@WXWIDGETS_GL_STATIC_LIBS@,$WXWIDGETS_GL_STATIC_LIBS,;t t
+-s,@WXWIDGETS_POST_LINK@,$WXWIDGETS_POST_LINK,;t t
+-s,@FASTCGI_INCLUDE@,$FASTCGI_INCLUDE,;t t
+-s,@FASTCGI_LIBS@,$FASTCGI_LIBS,;t t
+-s,@FASTCGI_OBJS@,$FASTCGI_OBJS,;t t
+-s,@NCBI_SSS_INCLUDE@,$NCBI_SSS_INCLUDE,;t t
+-s,@NCBI_SSS_LIBPATH@,$NCBI_SSS_LIBPATH,;t t
+-s,@LIBSSSUTILS@,$LIBSSSUTILS,;t t
+-s,@LIBSSSDB@,$LIBSSSDB,;t t
+-s,@sssutils@,$sssutils,;t t
+-s,@SP_INCLUDE@,$SP_INCLUDE,;t t
+-s,@SP_LIBS@,$SP_LIBS,;t t
+-s,@ORBACUS_INCLUDE@,$ORBACUS_INCLUDE,;t t
+-s,@ORBACUS_LIBPATH@,$ORBACUS_LIBPATH,;t t
+-s,@LIBOB@,$LIBOB,;t t
+-s,@LIBIMR@,$LIBIMR,;t t
+-s,@ICU_CONFIG@,$ICU_CONFIG,;t t
+-s,@ICU_INCLUDE@,$ICU_INCLUDE,;t t
+-s,@ICU_LIBS@,$ICU_LIBS,;t t
+-s,@ICU_STATIC_LIBS@,$ICU_STATIC_LIBS,;t t
+-s,@EXPAT_STATIC_LIBS@,$EXPAT_STATIC_LIBS,;t t
+-s,@SABLOT_STATIC_LIBS@,$SABLOT_STATIC_LIBS,;t t
+-s,@LIBXML_STATIC_LIBS@,$LIBXML_STATIC_LIBS,;t t
+-s,@LIBXSLT_STATIC_LIBS@,$LIBXSLT_STATIC_LIBS,;t t
+-s,@LIBEXSLT_STATIC_LIBS@,$LIBEXSLT_STATIC_LIBS,;t t
+-s,@XERCES_INCLUDE@,$XERCES_INCLUDE,;t t
+-s,@XERCES_LIBS@,$XERCES_LIBS,;t t
+-s,@XERCES_STATIC_LIBS@,$XERCES_STATIC_LIBS,;t t
+-s,@XALAN_INCLUDE@,$XALAN_INCLUDE,;t t
+-s,@XALAN_LIBS@,$XALAN_LIBS,;t t
+-s,@XALAN_STATIC_LIBS@,$XALAN_STATIC_LIBS,;t t
+-s,@ZORBA_INCLUDE@,$ZORBA_INCLUDE,;t t
+-s,@ZORBA_LIBS@,$ZORBA_LIBS,;t t
+-s,@ZORBA_STATIC_LIBS@,$ZORBA_STATIC_LIBS,;t t
+-s,@SQLITE3_STATIC_LIBS@,$SQLITE3_STATIC_LIBS,;t t
+-s,@FREETYPE_INCLUDE@,$FREETYPE_INCLUDE,;t t
+-s,@FREETYPE_LIBS@,$FREETYPE_LIBS,;t t
+-s,@ncbi_xreader_pubseqos@,$ncbi_xreader_pubseqos,;t t
+-s,@ncbi_xreader_pubseqos2@,$ncbi_xreader_pubseqos2,;t t
+-s,@UNLESS_PUBSEQOS@,$UNLESS_PUBSEQOS,;t t
+-s,@PERL_INCLUDE@,$PERL_INCLUDE,;t t
+-s,@PERL_LIBS@,$PERL_LIBS,;t t
+-s,@JDK_PATH@,$JDK_PATH,;t t
+-s,@JDK_INCLUDE@,$JDK_INCLUDE,;t t
+-s,@ncbi_java@,$ncbi_java,;t t
+-s,@NCBI_C_ncbi@,$NCBI_C_ncbi,;t t
+-s,@BINCOPY@,$BINCOPY,;t t
+-s,@APP_NOCOPY@,$APP_NOCOPY,;t t
+-s,@APP_OR_NULL@,$APP_OR_NULL,;t t
+-s,@IF_REBUILDING_LIBS@,$IF_REBUILDING_LIBS,;t t
+-s,@IF_REBUILDING_CONDITIONALLY@,$IF_REBUILDING_CONDITIONALLY,;t t
+-s,@IF_DEACTIVATING@,$IF_DEACTIVATING,;t t
+-s,@configurables_mfname@,$configurables_mfname,;t t
+-s,@CC_FILTER@,$CC_FILTER,;t t
+-s,@CXX_FILTER@,$CXX_FILTER,;t t
+-s,@AR_FILTER@,$AR_FILTER,;t t
+-s,@LINK_FILTER@,$LINK_FILTER,;t t
+-s,@CC_WRAPPER@,$CC_WRAPPER,;t t
+-s,@CXX_WRAPPER@,$CXX_WRAPPER,;t t
+-s,@AR_WRAPPER@,$AR_WRAPPER,;t t
+-s,@LINK_WRAPPER@,$LINK_WRAPPER,;t t
+-s,@KeepStateTarget@,$KeepStateTarget,;t t
+-s,@Rules@,$Rules,;t t
+-s,@serial_ws50_rtti_kludge@,$serial_ws50_rtti_kludge,;t t
+-s,@ncbicntr@,$ncbicntr,;t t
+-s,@UNIX_SRC@,$UNIX_SRC,;t t
+-s,@UNIX_USR_PROJ@,$UNIX_USR_PROJ,;t t
+-s,@compiler@,$compiler,;t t
+-s,@compiler_root@,$compiler_root,;t t
+-s,@compiler_version@,$compiler_version,;t t
+-s,@COMPILER@,$COMPILER,;t t
+-s,@OSTYPE@,$OSTYPE,;t t
+-s,@NCBI_PLATFORM_BITS@,$NCBI_PLATFORM_BITS,;t t
+-s,@LIBOBJS@,$LIBOBJS,;t t
+-s,@LTLIBOBJS@,$LTLIBOBJS,;t t
+-CEOF
+
++ac_delim='%!_!# '
++for ac_last_try in false false false false false :; do
++ cat >conf$$subs.sed <<_ACEOF
++IF_DEACTIVATING!$IF_DEACTIVATING$ac_delim
++configurables_mfname!$configurables_mfname$ac_delim
++CC_FILTER!$CC_FILTER$ac_delim
++CXX_FILTER!$CXX_FILTER$ac_delim
++AR_FILTER!$AR_FILTER$ac_delim
++LINK_FILTER!$LINK_FILTER$ac_delim
++CC_WRAPPER!$CC_WRAPPER$ac_delim
++CXX_WRAPPER!$CXX_WRAPPER$ac_delim
++AR_WRAPPER!$AR_WRAPPER$ac_delim
++LINK_WRAPPER!$LINK_WRAPPER$ac_delim
++KeepStateTarget!$KeepStateTarget$ac_delim
++Rules!$Rules$ac_delim
++serial_ws50_rtti_kludge!$serial_ws50_rtti_kludge$ac_delim
++ncbicntr!$ncbicntr$ac_delim
++UNIX_SRC!$UNIX_SRC$ac_delim
++UNIX_USR_PROJ!$UNIX_USR_PROJ$ac_delim
++compiler!$compiler$ac_delim
++compiler_root!$compiler_root$ac_delim
++compiler_version!$compiler_version$ac_delim
++COMPILER!$COMPILER$ac_delim
++OSTYPE!$OSTYPE$ac_delim
++NCBI_PLATFORM_BITS!$NCBI_PLATFORM_BITS$ac_delim
++LIBOBJS!$LIBOBJS$ac_delim
++LTLIBOBJS!$LTLIBOBJS$ac_delim
+ _ACEOF
+
+- cat >>$CONFIG_STATUS <<\_ACEOF
+- # Split the substitutions into bite-sized pieces for seds with
+- # small command number limits, like on Digital OSF/1 and HP-UX.
+- ac_max_sed_lines=48
+- ac_sed_frag=1 # Number of current file.
+- ac_beg=1 # First line for current file.
+- ac_end=$ac_max_sed_lines # Line after last line for current file.
+- ac_more_lines=:
+- ac_sed_cmds=
+- while $ac_more_lines; do
+- if test $ac_beg -gt 1; then
+- sed "1,${ac_beg}d; ${ac_end}q" $tmp/subs.sed >$tmp/subs.frag
+- else
+- sed "${ac_end}q" $tmp/subs.sed >$tmp/subs.frag
+- fi
+- if test ! -s $tmp/subs.frag; then
+- ac_more_lines=false
+- else
+- # The purpose of the label and of the branching condition is to
+- # speed up the sed processing (if there are no `@' at all, there
+- # is no need to browse any of the substitutions).
+- # These are the two extra sed commands mentioned above.
+- (echo ':t
+- /@[a-zA-Z_][a-zA-Z_0-9]*@/!b' && cat $tmp/subs.frag) >$tmp/subs-$ac_sed_frag.sed
+- if test -z "$ac_sed_cmds"; then
+- ac_sed_cmds="sed -f $tmp/subs-$ac_sed_frag.sed"
+- else
+- ac_sed_cmds="$ac_sed_cmds | sed -f $tmp/subs-$ac_sed_frag.sed"
+- fi
+- ac_sed_frag=`expr $ac_sed_frag + 1`
+- ac_beg=$ac_end
+- ac_end=`expr $ac_end + $ac_max_sed_lines`
++ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 24; then
++ break
++ elif $ac_last_try; then
++ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
++echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
++ { (exit 1); exit 1; }; }
++ else
++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
+ fi
+ done
+- if test -z "$ac_sed_cmds"; then
+- ac_sed_cmds=cat
++
++ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
++if test -n "$ac_eof"; then
++ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
++ ac_eof=`expr $ac_eof + 1`
+ fi
+-fi # test -n "$CONFIG_FILES"
+
++cat >>$CONFIG_STATUS <<_ACEOF
++cat >"\$tmp/subs-5.sed" <<\CEOF$ac_eof
++/@[a-zA-Z_][a-zA-Z_0-9]*@/!b end
++_ACEOF
++sed '
++s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
++s/^/s,@/; s/!/@,|#_!!_#|/
++:n
++t n
++s/'"$ac_delim"'$/,g/; t
++s/$/\\/; p
++N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
++' >>$CONFIG_STATUS <conf$$subs.sed
++rm -f conf$$subs.sed
++cat >>$CONFIG_STATUS <<_ACEOF
++:end
++s/|#_!!_#|//g
++CEOF$ac_eof
+ _ACEOF
++
++
++# VPATH may cause trouble with some makes, so we remove $(srcdir),
++# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
++# trailing colons and then remove the whole line if VPATH becomes empty
++# (actually we leave an empty line to preserve line numbers).
++if test "x$srcdir" = x.; then
++ ac_vpsub='/^[ ]*VPATH[ ]*=/{
++s/:*\$(srcdir):*/:/
++s/:*\${srcdir}:*/:/
++s/:*@srcdir@:*/:/
++s/^\([^=]*=[ ]*\):*/\1/
++s/:*$//
++s/^[^=]*=[ ]*$//
++}'
++fi
++
+ cat >>$CONFIG_STATUS <<\_ACEOF
+-for ac_file in : $CONFIG_FILES; do test "x$ac_file" = x: && continue
+- # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
+- case $ac_file in
+- - | *:- | *:-:* ) # input from stdin
+- cat >$tmp/stdin
+- ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
+- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+- *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
+- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+- * ) ac_file_in=$ac_file.in ;;
++fi # test -n "$CONFIG_FILES"
++
++
++for ac_tag in :F $CONFIG_FILES :H $CONFIG_HEADERS :C $CONFIG_COMMANDS
++do
++ case $ac_tag in
++ :[FHLC]) ac_mode=$ac_tag; continue;;
++ esac
++ case $ac_mode$ac_tag in
++ :[FHL]*:*);;
++ :L* | :C*:*) { { echo "$as_me:$LINENO: error: Invalid tag $ac_tag." >&5
++echo "$as_me: error: Invalid tag $ac_tag." >&2;}
++ { (exit 1); exit 1; }; };;
++ :[FH]-) ac_tag=-:-;;
++ :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
++ esac
++ ac_save_IFS=$IFS
++ IFS=:
++ set x $ac_tag
++ IFS=$ac_save_IFS
++ shift
++ ac_file=$1
++ shift
++
++ case $ac_mode in
++ :L) ac_source=$1;;
++ :[FH])
++ ac_file_inputs=
++ for ac_f
++ do
++ case $ac_f in
++ -) ac_f="$tmp/stdin";;
++ *) # Look for the file first in the build tree, then in the source tree
++ # (if the path is not absolute). The absolute path cannot be DOS-style,
++ # because $ac_f cannot contain `:'.
++ test -f "$ac_f" ||
++ case $ac_f in
++ [\\/$]*) false;;
++ *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
++ esac ||
++ { { echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
++echo "$as_me: error: cannot find input file: $ac_f" >&2;}
++ { (exit 1); exit 1; }; };;
++ esac
++ ac_file_inputs="$ac_file_inputs $ac_f"
++ done
++
++ # Let's still pretend it is `configure' which instantiates (i.e., don't
++ # use $as_me), people would be surprised to read:
++ # /* config.h. Generated by config.status. */
++ configure_input="Generated from "`IFS=:
++ echo $* | sed 's|^[^:]*/||;s|:[^:]*/|, |g'`" by configure."
++ if test x"$ac_file" != x-; then
++ configure_input="$ac_file. $configure_input"
++ { echo "$as_me:$LINENO: creating $ac_file" >&5
++echo "$as_me: creating $ac_file" >&6;}
++ fi
++
++ case $ac_tag in
++ *:-:* | *:-) cat >"$tmp/stdin";;
++ esac
++ ;;
+ esac
+
+- # Compute @srcdir@, @top_srcdir@, and @INSTALL@ for subdirectories.
+- ac_dir=`(dirname "$ac_file") 2>/dev/null ||
++ ac_dir=`$as_dirname -- "$ac_file" ||
+ $as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$ac_file" : 'X\(//\)[^/]' \| \
+ X"$ac_file" : 'X\(//\)$' \| \
+- X"$ac_file" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
++ X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
+ echo X"$ac_file" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
+ s/.*/./; q'`
+- { if $as_mkdir_p; then
+- mkdir -p "$ac_dir"
+- else
+- as_dir="$ac_dir"
++ { as_dir="$ac_dir"
++ case $as_dir in #(
++ -*) as_dir=./$as_dir;;
++ esac
++ test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
+ as_dirs=
+- while test ! -d "$as_dir"; do
+- as_dirs="$as_dir $as_dirs"
+- as_dir=`(dirname "$as_dir") 2>/dev/null ||
++ while :; do
++ case $as_dir in #(
++ *\'*) as_qdir=`echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #(
++ *) as_qdir=$as_dir;;
++ esac
++ as_dirs="'$as_qdir' $as_dirs"
++ as_dir=`$as_dirname -- "$as_dir" ||
+ $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$as_dir" : 'X\(//\)[^/]' \| \
+ X"$as_dir" : 'X\(//\)$' \| \
+- X"$as_dir" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
++ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+ echo X"$as_dir" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
+ s/.*/./; q'`
++ test -d "$as_dir" && break
+ done
+- test ! -n "$as_dirs" || mkdir $as_dirs
+- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
+-echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
++ test -z "$as_dirs" || eval "mkdir $as_dirs"
++ } || test -d "$as_dir" || { { echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
++echo "$as_me: error: cannot create directory $as_dir" >&2;}
+ { (exit 1); exit 1; }; }; }
+-
+- #ac_builddir=. # Useless!
+-ac_builddir=$builddir
+-if test -n "$ac_file_in"; then
+- ac_dir_in=`(dirname "$ac_file_in") 2>/dev/null ||
+-$as_expr X"$ac_file_in" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+- X"$ac_file_in" : 'X\(//\)[^/]' \| \
+- X"$ac_file_in" : 'X\(//\)$' \| \
+- X"$ac_file_in" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X"$ac_file_in" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
++ # Base source directories on path to *input* file.
++if test -n "$ac_f"; then
++ ac_dir_in=`$as_dirname -- "$ac_f" ||
++$as_expr X"$ac_f" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
++ X"$ac_f" : 'X\(//\)[^/]' \| \
++ X"$ac_f" : 'X\(//\)$' \| \
++ X"$ac_f" : 'X\(/\)' \| . 2>/dev/null ||
++echo X"$ac_f" |
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
+ s/.*/./; q'`
+ else
+ ac_dir_in="$ac_dir"
+ fi
+
+-if test $ac_dir_in != .; then
+- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[\\/],,'`
+- # A "../" for each directory in $ac_dir_suffix.
+- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
+-else
+- ac_dir_suffix= ac_top_builddir=
+-fi
++ac_builddir=.
+
+-case $srcdir in
+- .) # No --srcdir option. We are building in place.
+- ac_srcdir=.
+- if test -z "$ac_top_builddir"; then
+- ac_top_srcdir=.
+- else
+- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
+- fi ;;
+- [\\/]* | ?:[\\/]* ) # Absolute path.
+- ac_srcdir=$srcdir/$ac_dir_suffix;
+- ac_top_srcdir=$srcdir ;;
+- *) # Relative path.
+- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
+- ac_top_srcdir=$ac_top_builddir$srcdir ;;
+-esac
+-# Do not use `cd foo && pwd` to compute absolute paths, because
+-# the directories may not exist.
+-case $builddir in
+-.) ac_abs_builddir="$ac_dir";;
+-*)
+- case "$ac_dir" in
+- .) ac_abs_builddir=$builddir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
+- *) ac_abs_builddir=$builddir/"$ac_dir";;
+- esac;;
+-esac
+-case $ac_abs_builddir in
+-.) ac_abs_top_builddir=${ac_top_builddir}.;;
++case "$ac_dir_in" in
++.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
+ *)
+- case ${ac_top_builddir}. in
+- .) ac_abs_top_builddir=$ac_abs_builddir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
+- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
++ ac_dir_suffix=/`echo "$ac_dir_in" | sed 's,^\.[\\/],,'`
++ # A ".." for each directory in $ac_dir_suffix.
++ ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
++ case $ac_top_builddir_sub in
++ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
++ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
+ esac;;
+ esac
++ac_abs_top_builddir=$ac_pwd
++ac_abs_builddir=$ac_pwd$ac_dir_suffix
++# for backward compatibility:
++ac_top_builddir=$ac_top_build_prefix
++
++case $srcdir in
++ .) # We are building in place.
++ ac_srcdir=.
++ ac_top_srcdir=$ac_top_builddir_sub
++ ac_abs_top_srcdir=$ac_pwd ;;
++ [\\/]* | ?:[\\/]* ) # Absolute name.
++ ac_srcdir=$srcdir$ac_dir_suffix;
++ ac_top_srcdir=$srcdir
++ ac_abs_top_srcdir=$srcdir ;;
++ *) # Relative name.
++ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
++ ac_top_srcdir=$ac_top_build_prefix$srcdir
++ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
++esac
++ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
++
++
+ case $ac_dir_in in
+ .) ac_abs_top_srcdir=$real_srcdir;;
+ *)
+@@ -36015,66 +41447,55 @@
+ *) ac_abs_top_srcdir=$ac_dir_in/$real_srcdir;;
+ esac;;
+ esac
+-case $ac_abs_top_srcdir in
+-.) ac_abs_srcdir=$ac_dir_suffix;;
+-*)
+- case $ac_dir_suffix in
+- .) ac_abs_srcdir=$ac_abs_top_srcdir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_dir_suffix;;
+- *) ac_abs_srcdir=$ac_abs_top_srcdir/$ac_dir_suffix;;
+- esac;;
+-esac
++ac_builddir=$builddir
+
+
++ case $ac_mode in
++ :F)
++ #
++ # CONFIG_FILE
++ #
++
+ case $INSTALL in
+ [\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
+- *) ac_INSTALL=$ac_top_builddir$INSTALL ;;
++ *) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
+ esac
++_ACEOF
+
+- if test x"$ac_file" != x-; then
+- { echo "$as_me:$LINENO: creating $ac_file" >&5
+-echo "$as_me: creating $ac_file" >&6;}
+- rm -f "$ac_file"
+- fi
+- # Let's still pretend it is `configure' which instantiates (i.e., don't
+- # use $as_me), people would be surprised to read:
+- # /* config.h. Generated by config.status. */
+- if test x"$ac_file" = x-; then
+- configure_input=
+- else
+- configure_input="$ac_file. "
+- fi
+- configure_input=$configure_input"Generated from `echo $ac_file_in |
+- sed 's,.*/,,'` by configure."
+-
+- # First look for the input files in the build tree, otherwise in the
+- # src tree.
+- ac_file_inputs=`IFS=:
+- for f in $ac_file_in; do
+- case $f in
+- -) echo $tmp/stdin ;;
+- [\\/$]*)
+- # Absolute (can't be DOS-style, as IFS=:)
+- test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+-echo "$as_me: error: cannot find input file: $f" >&2;}
+- { (exit 1); exit 1; }; }
+- echo "$f";;
+- *) # Relative
+- if test -f "$f"; then
+- # Build tree
+- echo "$f"
+- elif test -f "$srcdir/$f"; then
+- # Source tree
+- echo "$srcdir/$f"
+- else
+- # /dev/null tree
+- { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+-echo "$as_me: error: cannot find input file: $f" >&2;}
+- { (exit 1); exit 1; }; }
+- fi;;
++cat >>$CONFIG_STATUS <<\_ACEOF
++# If the template does not know about datarootdir, expand it.
++# FIXME: This hack should be removed a few years after 2.60.
++ac_datarootdir_hack=; ac_datarootdir_seen=
++
++case `sed -n '/datarootdir/ {
++ p
++ q
++}
++/@datadir@/p
++/@docdir@/p
++/@infodir@/p
++/@localedir@/p
++/@mandir@/p
++' $ac_file_inputs` in
++*datarootdir*) ac_datarootdir_seen=yes;;
++*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
++ { echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
++echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
++_ACEOF
++cat >>$CONFIG_STATUS <<_ACEOF
++ ac_datarootdir_hack='
++ s&@datadir@&$datadir&g
++ s&@docdir@&$docdir&g
++ s&@infodir@&$infodir&g
++ s&@localedir@&$localedir&g
++ s&@mandir@&$mandir&g
++ s&\\\${datarootdir}&$datarootdir&g' ;;
+ esac
+- done` || { (exit 1); exit 1; }
+ _ACEOF
++
++# Neutralize VPATH when `$srcdir' = `.'.
++# Shell code in configure.ac might set extrasub.
++# FIXME: do we really want to maintain this feature?
+ cat >>$CONFIG_STATUS <<_ACEOF
+ sed "$ac_vpsub
+ $extrasub
+@@ -36082,381 +41503,140 @@
+ cat >>$CONFIG_STATUS <<\_ACEOF
+ :t
+ /@[a-zA-Z_][a-zA-Z_0-9]*@/!b
+-s,@configure_input@,$configure_input,;t t
+-s,@srcdir@,$ac_srcdir,;t t
+-s,@abs_srcdir@,$ac_abs_srcdir,;t t
+-s,@top_srcdir@,$ac_top_srcdir,;t t
+-s,@abs_top_srcdir@,$ac_abs_top_srcdir,;t t
+-s,@builddir@,$ac_builddir,;t t
+-s,@abs_builddir@,$ac_abs_builddir,;t t
+-s,@top_builddir@,$ac_top_builddir,;t t
+-s,@abs_top_builddir@,$ac_abs_top_builddir,;t t
+-s,@INSTALL@,$ac_INSTALL,;t t
+-" $ac_file_inputs | (eval "$ac_sed_cmds") >$tmp/out
+- rm -f $tmp/stdin
+- if test x"$ac_file" != x-; then
+- mv $tmp/out $ac_file
+- else
+- cat $tmp/out
+- rm -f $tmp/out
+- fi
+-
+-done
+-_ACEOF
+-cat >>$CONFIG_STATUS <<\_ACEOF
++s&@configure_input@&$configure_input&;t t
++s&@top_builddir@&$ac_top_builddir_sub&;t t
++s&@srcdir@&$ac_srcdir&;t t
++s&@abs_srcdir@&$ac_abs_srcdir&;t t
++s&@top_srcdir@&$ac_top_srcdir&;t t
++s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
++s&@builddir@&$ac_builddir&;t t
++s&@abs_builddir@&$ac_abs_builddir&;t t
++s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
++s&@INSTALL@&$ac_INSTALL&;t t
++$ac_datarootdir_hack
++" $ac_file_inputs | sed -f "$tmp/subs-1.sed" | sed -f "$tmp/subs-2.sed" | sed -f "$tmp/subs-3.sed" | sed -f "$tmp/subs-4.sed" | sed -f "$tmp/subs-5.sed" >$tmp/out
++
++test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
++ { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
++ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
++ { echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
++which seems to be undefined. Please make sure it is defined." >&5
++echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
++which seems to be undefined. Please make sure it is defined." >&2;}
+
++ rm -f "$tmp/stdin"
++ case $ac_file in
++ -) cat "$tmp/out"; rm -f "$tmp/out";;
++ *) rm -f "$ac_file"; mv "$tmp/out" $ac_file;;
++ esac
++ ;;
++ :H)
+ #
+-# CONFIG_HEADER section.
++ # CONFIG_HEADER
+ #
++_ACEOF
+
+-# These sed commands are passed to sed as "A NAME B NAME C VALUE D", where
+-# NAME is the cpp macro being defined and VALUE is the value it is being given.
+-#
+-# ac_d sets the value in "#define NAME VALUE" lines.
+-ac_dA='s,^\([ ]*\)#\([ ]*define[ ][ ]*\)'
+-ac_dB='[ ].*$,\1#\2'
++# Transform confdefs.h into a sed script `conftest.defines', that
++# substitutes the proper values into config.h.in to produce config.h.
++rm -f conftest.defines conftest.tail
++# First, append a space to every undef/define line, to ease matching.
++echo 's/$/ /' >conftest.defines
++# Then, protect against being on the right side of a sed subst, or in
++# an unquoted here document, in config.status. If some macros were
++# called several times there might be several #defines for the same
++# symbol, which is useless. But do not sort them, since the last
++# AC_DEFINE must be honored.
++ac_word_re=[_$as_cr_Letters][_$as_cr_alnum]*
++# These sed commands are passed to sed as "A NAME B PARAMS C VALUE D", where
++# NAME is the cpp macro being defined, VALUE is the value it is being given.
++# PARAMS is the parameter list in the macro definition--in most cases, it's
++# just an empty string.
++ac_dA='s,^\\([ #]*\\)[^ ]*\\([ ]*'
++ac_dB='\\)[ (].*,\\1define\\2'
+ ac_dC=' '
+-ac_dD=',;t'
+-# ac_u turns "#undef NAME" without trailing blanks into "#define NAME VALUE".
+-ac_uA='s,^\([ ]*\)#\([ ]*\)undef\([ ][ ]*\)'
+-ac_uB='$,\1#\2define\3'
+-ac_uC=' '
+-ac_uD=',;t'
++ac_dD=' ,'
+
+-for ac_file in : $CONFIG_HEADERS; do test "x$ac_file" = x: && continue
+- # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
+- case $ac_file in
+- - | *:- | *:-:* ) # input from stdin
+- cat >$tmp/stdin
+- ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
+- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+- *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
+- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
+- * ) ac_file_in=$ac_file.in ;;
+- esac
+-
+- test x"$ac_file" != x- && { echo "$as_me:$LINENO: creating $ac_file" >&5
+-echo "$as_me: creating $ac_file" >&6;}
+-
+- # First look for the input files in the build tree, otherwise in the
+- # src tree.
+- ac_file_inputs=`IFS=:
+- for f in $ac_file_in; do
+- case $f in
+- -) echo $tmp/stdin ;;
+- [\\/$]*)
+- # Absolute (can't be DOS-style, as IFS=:)
+- test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+-echo "$as_me: error: cannot find input file: $f" >&2;}
+- { (exit 1); exit 1; }; }
+- # Do quote $f, to prevent DOS paths from being IFS'd.
+- echo "$f";;
+- *) # Relative
+- if test -f "$f"; then
+- # Build tree
+- echo "$f"
+- elif test -f "$srcdir/$f"; then
+- # Source tree
+- echo "$srcdir/$f"
+- else
+- # /dev/null tree
+- { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
+-echo "$as_me: error: cannot find input file: $f" >&2;}
+- { (exit 1); exit 1; }; }
+- fi;;
+- esac
+- done` || { (exit 1); exit 1; }
+- # Remove the trailing spaces.
+- sed 's/[ ]*$//' $ac_file_inputs >$tmp/in
+-
+-_ACEOF
+-
+-# Transform confdefs.h into two sed scripts, `conftest.defines' and
+-# `conftest.undefs', that substitutes the proper values into
+-# config.h.in to produce config.h. The first handles `#define'
+-# templates, and the second `#undef' templates.
+-# And first: Protect against being on the right side of a sed subst in
+-# config.status. Protect against being in an unquoted here document
+-# in config.status.
+-rm -f conftest.defines conftest.undefs
+-# Using a here document instead of a string reduces the quoting nightmare.
+-# Putting comments in sed scripts is not portable.
+-#
+-# `end' is used to avoid that the second main sed command (meant for
+-# 0-ary CPP macros) applies to n-ary macro definitions.
+-# See the Autoconf documentation for `clear'.
+-cat >confdef2sed.sed <<\_ACEOF
++uniq confdefs.h |
++ sed -n '
++ t rset
++ :rset
++ s/^[ ]*#[ ]*define[ ][ ]*//
++ t ok
++ d
++ :ok
+ s/[\\&,]/\\&/g
+-s,[\\$`],\\&,g
+-t clear
+-: clear
+-s,^[ ]*#[ ]*define[ ][ ]*\([^ (][^ (]*\)\(([^)]*)\)[ ]*\(.*\)$,${ac_dA}\1${ac_dB}\1\2${ac_dC}\3${ac_dD},gp
+-t end
+-s,^[ ]*#[ ]*define[ ][ ]*\([^ ][^ ]*\)[ ]*\(.*\)$,${ac_dA}\1${ac_dB}\1${ac_dC}\2${ac_dD},gp
+-: end
+-_ACEOF
+-# If some macros were called several times there might be several times
+-# the same #defines, which is useless. Nevertheless, we may not want to
+-# sort them, since we want the *last* AC-DEFINE to be honored.
+-uniq confdefs.h | sed -n -f confdef2sed.sed >conftest.defines
+-sed 's/ac_d/ac_u/g' conftest.defines >conftest.undefs
+-rm -f confdef2sed.sed
++ s/^\('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/ '"$ac_dA"'\1'"$ac_dB"'\2'"${ac_dC}"'\3'"$ac_dD"'/p
++ s/^\('"$ac_word_re"'\)[ ]*\(.*\)/'"$ac_dA"'\1'"$ac_dB$ac_dC"'\2'"$ac_dD"'/p
++ ' >>conftest.defines
+
+-# This sed command replaces #undef with comments. This is necessary, for
++# Remove the space that was appended to ease matching.
++# Then replace #undef with comments. This is necessary, for
+ # example, in the case of _POSIX_SOURCE, which is predefined and required
+ # on some systems where configure will not decide to define it.
+-cat >>conftest.undefs <<\_ACEOF
+-s,^[ ]*#[ ]*undef[ ][ ]*[a-zA-Z_][a-zA-Z_0-9]*,/* & */,
+-_ACEOF
++# (The regexp can be short, since the line contains either #define or #undef.)
++echo 's/ $//
++s,^[ #]*u.*,/* & */,' >>conftest.defines
++
++# Break up conftest.defines:
++ac_max_sed_lines=50
++
++# First sed command is: sed -f defines.sed $ac_file_inputs >"$tmp/out1"
++# Second one is: sed -f defines.sed "$tmp/out1" >"$tmp/out2"
++# Third one will be: sed -f defines.sed "$tmp/out2" >"$tmp/out1"
++# et cetera.
++ac_in='$ac_file_inputs'
++ac_out='"$tmp/out1"'
++ac_nxt='"$tmp/out2"'
+
+-# Break up conftest.defines because some shells have a limit on the size
+-# of here documents, and old seds have small limits too (100 cmds).
+-echo ' # Handle all the #define templates only if necessary.' >>$CONFIG_STATUS
+-echo ' if grep "^[ ]*#[ ]*define" $tmp/in >/dev/null; then' >>$CONFIG_STATUS
+-echo ' # If there are no defines, we may have an empty if/fi' >>$CONFIG_STATUS
+-echo ' :' >>$CONFIG_STATUS
+-rm -f conftest.tail
+-while grep . conftest.defines >/dev/null
+-do
+- # Write a limited-size here document to $tmp/defines.sed.
+- echo ' cat >$tmp/defines.sed <<CEOF' >>$CONFIG_STATUS
+- # Speed up: don't consider the non `#define' lines.
+- echo '/^[ ]*#[ ]*define/!b' >>$CONFIG_STATUS
+- # Work around the forget-to-reset-the-flag bug.
+- echo 't clr' >>$CONFIG_STATUS
+- echo ': clr' >>$CONFIG_STATUS
+- sed ${ac_max_here_lines}q conftest.defines >>$CONFIG_STATUS
++while :
++do
++ # Write a here document:
++ cat >>$CONFIG_STATUS <<_ACEOF
++ # First, check the format of the line:
++ cat >"\$tmp/defines.sed" <<\\CEOF
++/^[ ]*#[ ]*undef[ ][ ]*$ac_word_re[ ]*\$/b def
++/^[ ]*#[ ]*define[ ][ ]*$ac_word_re[( ]/b def
++b
++:def
++_ACEOF
++ sed ${ac_max_sed_lines}q conftest.defines >>$CONFIG_STATUS
+ echo 'CEOF
+- sed -f $tmp/defines.sed $tmp/in >$tmp/out
+- rm -f $tmp/in
+- mv $tmp/out $tmp/in
+-' >>$CONFIG_STATUS
+- sed 1,${ac_max_here_lines}d conftest.defines >conftest.tail
++ sed -f "$tmp/defines.sed"' "$ac_in >$ac_out" >>$CONFIG_STATUS
++ ac_in=$ac_out; ac_out=$ac_nxt; ac_nxt=$ac_in
++ sed 1,${ac_max_sed_lines}d conftest.defines >conftest.tail
++ grep . conftest.tail >/dev/null || break
+ rm -f conftest.defines
+ mv conftest.tail conftest.defines
+ done
+-rm -f conftest.defines
+-echo ' fi # grep' >>$CONFIG_STATUS
+-echo >>$CONFIG_STATUS
+-
+-# Break up conftest.undefs because some shells have a limit on the size
+-# of here documents, and old seds have small limits too (100 cmds).
+-echo ' # Handle all the #undef templates' >>$CONFIG_STATUS
+-rm -f conftest.tail
+-while grep . conftest.undefs >/dev/null
+-do
+- # Write a limited-size here document to $tmp/undefs.sed.
+- echo ' cat >$tmp/undefs.sed <<CEOF' >>$CONFIG_STATUS
+- # Speed up: don't consider the non `#undef'
+- echo '/^[ ]*#[ ]*undef/!b' >>$CONFIG_STATUS
+- # Work around the forget-to-reset-the-flag bug.
+- echo 't clr' >>$CONFIG_STATUS
+- echo ': clr' >>$CONFIG_STATUS
+- sed ${ac_max_here_lines}q conftest.undefs >>$CONFIG_STATUS
+- echo 'CEOF
+- sed -f $tmp/undefs.sed $tmp/in >$tmp/out
+- rm -f $tmp/in
+- mv $tmp/out $tmp/in
+-' >>$CONFIG_STATUS
+- sed 1,${ac_max_here_lines}d conftest.undefs >conftest.tail
+- rm -f conftest.undefs
+- mv conftest.tail conftest.undefs
+-done
+-rm -f conftest.undefs
++rm -f conftest.defines conftest.tail
+
++echo "ac_result=$ac_in" >>$CONFIG_STATUS
+ cat >>$CONFIG_STATUS <<\_ACEOF
+- # Let's still pretend it is `configure' which instantiates (i.e., don't
+- # use $as_me), people would be surprised to read:
+- # /* config.h. Generated by config.status. */
+- if test x"$ac_file" = x-; then
+- echo "/* Generated by configure. */" >$tmp/config.h
+- else
+- echo "/* $ac_file. Generated by configure. */" >$tmp/config.h
+- fi
+- cat $tmp/in >>$tmp/config.h
+- rm -f $tmp/in
+ if test x"$ac_file" != x-; then
+- if diff $ac_file $tmp/config.h >/dev/null 2>&1; then
++ echo "/* $configure_input */" >"$tmp/config.h"
++ cat "$ac_result" >>"$tmp/config.h"
++ if diff $ac_file "$tmp/config.h" >/dev/null 2>&1; then
+ { echo "$as_me:$LINENO: $ac_file is unchanged" >&5
+ echo "$as_me: $ac_file is unchanged" >&6;}
+ else
+- ac_dir=`(dirname "$ac_file") 2>/dev/null ||
+-$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+- X"$ac_file" : 'X\(//\)[^/]' \| \
+- X"$ac_file" : 'X\(//\)$' \| \
+- X"$ac_file" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X"$ac_file" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
+- s/.*/./; q'`
+- { if $as_mkdir_p; then
+- mkdir -p "$ac_dir"
+- else
+- as_dir="$ac_dir"
+- as_dirs=
+- while test ! -d "$as_dir"; do
+- as_dirs="$as_dir $as_dirs"
+- as_dir=`(dirname "$as_dir") 2>/dev/null ||
+-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+- X"$as_dir" : 'X\(//\)[^/]' \| \
+- X"$as_dir" : 'X\(//\)$' \| \
+- X"$as_dir" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X"$as_dir" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
+- s/.*/./; q'`
+- done
+- test ! -n "$as_dirs" || mkdir $as_dirs
+- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
+-echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
+- { (exit 1); exit 1; }; }; }
+-
+ rm -f $ac_file
+- mv $tmp/config.h $ac_file
+- fi
+- else
+- cat $tmp/config.h
+- rm -f $tmp/config.h
+- fi
+-done
+-_ACEOF
+-cat >>$CONFIG_STATUS <<\_ACEOF
+-
+-#
+-# CONFIG_COMMANDS section.
+-#
+-for ac_file in : $CONFIG_COMMANDS; do test "x$ac_file" = x: && continue
+- ac_dest=`echo "$ac_file" | sed 's,:.*,,'`
+- ac_source=`echo "$ac_file" | sed 's,[^:]*:,,'`
+- ac_dir=`(dirname "$ac_dest") 2>/dev/null ||
+-$as_expr X"$ac_dest" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+- X"$ac_dest" : 'X\(//\)[^/]' \| \
+- X"$ac_dest" : 'X\(//\)$' \| \
+- X"$ac_dest" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X"$ac_dest" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
+- s/.*/./; q'`
+- { if $as_mkdir_p; then
+- mkdir -p "$ac_dir"
+- else
+- as_dir="$ac_dir"
+- as_dirs=
+- while test ! -d "$as_dir"; do
+- as_dirs="$as_dir $as_dirs"
+- as_dir=`(dirname "$as_dir") 2>/dev/null ||
+-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+- X"$as_dir" : 'X\(//\)[^/]' \| \
+- X"$as_dir" : 'X\(//\)$' \| \
+- X"$as_dir" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X"$as_dir" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
+- s/.*/./; q'`
+- done
+- test ! -n "$as_dirs" || mkdir $as_dirs
+- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
+-echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
+- { (exit 1); exit 1; }; }; }
+-
+- #ac_builddir=. # Useless!
+-ac_builddir=$builddir
+-if test -n "$ac_file_in"; then
+- ac_dir_in=`(dirname "$ac_file_in") 2>/dev/null ||
+-$as_expr X"$ac_file_in" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+- X"$ac_file_in" : 'X\(//\)[^/]' \| \
+- X"$ac_file_in" : 'X\(//\)$' \| \
+- X"$ac_file_in" : 'X\(/\)' \| \
+- . : '\(.\)' 2>/dev/null ||
+-echo X"$ac_file_in" |
+- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
+- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
+- /^X\(\/\/\)$/{ s//\1/; q; }
+- /^X\(\/\).*/{ s//\1/; q; }
+- s/.*/./; q'`
+-else
+- ac_dir_in="$ac_dir"
++ mv "$tmp/config.h" $ac_file
+ fi
+-
+-if test $ac_dir_in != .; then
+- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[\\/],,'`
+- # A "../" for each directory in $ac_dir_suffix.
+- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
+ else
+- ac_dir_suffix= ac_top_builddir=
++ echo "/* $configure_input */"
++ cat "$ac_result"
+ fi
++ rm -f "$tmp/out12"
++ ;;
+
+-case $srcdir in
+- .) # No --srcdir option. We are building in place.
+- ac_srcdir=.
+- if test -z "$ac_top_builddir"; then
+- ac_top_srcdir=.
+- else
+- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
+- fi ;;
+- [\\/]* | ?:[\\/]* ) # Absolute path.
+- ac_srcdir=$srcdir/$ac_dir_suffix;
+- ac_top_srcdir=$srcdir ;;
+- *) # Relative path.
+- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
+- ac_top_srcdir=$ac_top_builddir$srcdir ;;
+-esac
+-# Do not use `cd foo && pwd` to compute absolute paths, because
+-# the directories may not exist.
+-case $builddir in
+-.) ac_abs_builddir="$ac_dir";;
+-*)
+- case "$ac_dir" in
+- .) ac_abs_builddir=$builddir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
+- *) ac_abs_builddir=$builddir/"$ac_dir";;
+- esac;;
+-esac
+-case $ac_abs_builddir in
+-.) ac_abs_top_builddir=${ac_top_builddir}.;;
+-*)
+- case ${ac_top_builddir}. in
+- .) ac_abs_top_builddir=$ac_abs_builddir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
+- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
+- esac;;
+-esac
+-case $ac_dir_in in
+-.) ac_abs_top_srcdir=$real_srcdir;;
+-*)
+- case $real_srcdir in
+- .) ac_abs_top_srcdir=$ac_dir_in;;
+- [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$real_srcdir;;
+- *) ac_abs_top_srcdir=$ac_dir_in/$real_srcdir;;
+- esac;;
+-esac
+-case $ac_abs_top_srcdir in
+-.) ac_abs_srcdir=$ac_dir_suffix;;
+-*)
+- case $ac_dir_suffix in
+- .) ac_abs_srcdir=$ac_abs_top_srcdir;;
+- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_dir_suffix;;
+- *) ac_abs_srcdir=$ac_abs_top_srcdir/$ac_dir_suffix;;
+- esac;;
++ :C) { echo "$as_me:$LINENO: executing $ac_file commands" >&5
++echo "$as_me: executing $ac_file commands" >&6;}
++ ;;
+ esac
+
+
+- { echo "$as_me:$LINENO: executing $ac_dest commands" >&5
+-echo "$as_me: executing $ac_dest commands" >&6;}
+- case $ac_dest in
+- default )
++ case $ac_file$ac_mode in
++ "default":C)
+ find "$build_root/." -name '*.sh' -print | while read x_file ; do
+ chmod a+x "$x_file"
+ done
+@@ -36601,7 +41781,9 @@
+
+ cat << EOCONF
+ ===============================================================================
+-NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running
++NCBI C++ Toolkit documentation:
++ Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
++ Local: ./doc/public/index.html
+ For the available configuration flags run: ./configure --help
+
+ CFLAGS = $CFLAGS
+@@ -36628,11 +41810,10 @@
+ ******* CONFIGURATION SUCCESSFUL *******
+ EOCONF
+ ;;
++
+ esac
+-done
+-_ACEOF
++done # for ac_tag
+
+-cat >>$CONFIG_STATUS <<\_ACEOF
+
+ { (exit 0); exit 0; }
+ _ACEOF
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 64e8c23..2a77c11 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -26,14 +26,12 @@ IUSE="
debug static-libs static threads pch
test wxwidgets odbc
berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif
- glut hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
+ glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X"
-# removed IUSE=gnutls due to Gentoo bug #421777
#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
KEYWORDS=""
# sys-libs/db should be compiled with USE=cxx
-# dropped 'gnutls? ( net-libs/gnutls[lzo] )' from DEPEND due to Gentoo bug #421777
DEPEND="
berkdb? ( sys-libs/db:4.3[cxx] )
ftds? ( dev-db/freetds )
@@ -51,6 +49,7 @@ DEPEND="
glut? ( media-libs/freeglut )
freetype? ( media-libs/freetype )
fastcgi? ( www-apache/mod_fastcgi )
+ gnutls? ( net-libs/gnutls[lzo] )
python? ( dev-lang/python )
cppunit? ( dev-util/cppunit )
icu? ( dev-libs/icu )
@@ -114,14 +113,19 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
"${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
"${FILESDIR}"/${P}-support-autoconf-2.60.patch
+ "${FILESDIR}"/${P}-configure.patch
)
epatch ${PATCHES[@]}
+ # make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60
+ # https://bugs.gentoo.org/show_bug.cgi?id=514706
tc-export CXX CC
cd src/build-system || die
# eautoreconf
- eautoconf
+
+ # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
+ #eautoconf
# beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
}
@@ -218,7 +222,7 @@ src_configure() {
$(use_with pch)
$(use_with lzo lzo "${EPREFIX}/usr")
$(use_with pcre pcre "${EPREFIX}/usr")
-# $(use_with gnutls gnutls "${EPREFIX}/usr")
+ $(use_with gnutls gnutls "${EPREFIX}/usr")
$(use_with ssl openssl "${EPREFIX}/usr")
$(use_with ftds ftds "${EPREFIX}/usr")
$(use_with mysql mysql "${EPREFIX}/usr")
@@ -251,7 +255,7 @@ src_configure() {
$(use_with xpm xpm "${EPREFIX}/usr")
$(use_with curl curl "${EPREFIX}/usr")
# $(use_with X x "${EPREFIX}/usr")
- $(use_with X x)
+# $(use_with X x) # there is no --with-x option
)
# http://www.ncbi.nlm.nih.gov/books/NBK7167/
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-06-25 15:00 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2014-06-25 15:00 UTC (permalink / raw
To: gentoo-commits
commit: 10e04f5023b0d6d66f63f277104707e2aea0fda7
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 25 15:00:13 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 25 15:00:13 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=10e04f50
more changes to get ncbi-tools++-12.0.0 compiled
---
.../files/ncbi-tools++-12.0.0-linking.patch | 52 +
.../files/ncbi-tools++-12.0.0-linking2.patch | 10 +
.../files/ncbi-tools++-12.0.0-more-patches.patch | 136 ++
...ncbi-tools++-12.0.0-support-autoconf-2.60.patch | 1512 +-------------------
...tools++-12.0.0-support-autoconf-2.60.patch.bad} | 0
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 46 +-
6 files changed, 308 insertions(+), 1448 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking.patch
new file mode 100644
index 0000000..196f3a4
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking.patch
@@ -0,0 +1,52 @@
+--- ncbi_cxx--12_0_0/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib.ori (revision 400707)
++++ ncbi_cxx--12_0_0/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib (working copy)
+@@ -10,6 +10,6 @@
+ LIB_OR_DLL = both
+
+ # Dependencies for shared library
+-DLL_LIB = ncbi_xreader$(DLL)
++DLL_LIB = $(GENBANK_LDEP)
+
+ WATCHERS = vasilche
+--- ncbi_cxx--12_0_0/src/app/grid/util/Makefile.ncfetch.app.ori (revision 400707)
++++ ncbi_cxx--12_0_0/src/app/grid/util/Makefile.ncfetch.app (working copy)
+@@ -5,7 +5,7 @@
+ APP = ncfetch.cgi
+ SRC = ncfetch
+
+-LIB = xcgi xconnserv xconnect xutil xncbi
++LIB = xcgi xconnserv xthrserv xconnect xutil xncbi
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = kazimird
+--- ncbi_cxx--12_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app.ori (revision 400707)
++++ ncbi_cxx--12_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app (working copy)
+@@ -4,7 +4,7 @@
+ SRC = netcache_cgi_sample
+
+ ### BEGIN COPIED SETTINGS
+-LIB = xconnserv xconnect xcgi xhtml xutil xncbi
++LIB = xconnserv xthrserv xconnect xcgi xhtml xutil xncbi
+
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+ ### END COPIED SETTINGS
+--- ncbi_cxx--12_0_0/src/misc/grid_cgi/Makefile.xgridcgi.lib.ori 2014-06-24 21:42:11.000000000 +0200
++++ ncbi_cxx--12_0_0/src/misc/grid_cgi/Makefile.xgridcgi.lib 2014-06-24 21:42:29.000000000 +0200
+@@ -10,4 +10,4 @@
+
+ WATCHERS = vakatov
+
+-DLL_LIB = xncbi xcgi xconnserv xhtml
++DLL_LIB = xhtml xcgi xconnserv
+--- ncbi_cxx--12_0_0/src/sra/sdk/libs/vfs/Makefile.vfs.lib.ori 2014-06-24 22:54:55.000000000 +0200
++++ ncbi_cxx--12_0_0/src/sra/sdk/libs/vfs/Makefile.vfs.lib 2014-06-24 22:55:05.000000000 +0200
+@@ -8,6 +8,7 @@
+ CPPFLAGS = -I$(srcdir) $(SRA_INCLUDE) $(Z_INCLUDE) $(BZ2_INCLUDE) \
+ $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY -DALWAYS_ADD_EXE $(ORIG_CPPFLAGS)
+
+-DLL_LIB = srapath$(DLL) kurl$(DLL) krypto$(DLL) kfg$(DLL) kfs$(DLL) klib$(DLL)
++DLL_LIB = srapath$(FORCE_STATIC) kurl$(FORCE_STATIC) krypto$(DLL) \
++ kfg$(DLL) kfs$(DLL) klib$(DLL)
+
+ LIB_OR_DLL = both
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking2.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking2.patch
new file mode 100644
index 0000000..5507b84
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking2.patch
@@ -0,0 +1,10 @@
+--- ncbi_cxx--12_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app.ori 2014-06-24 21:50:43.000000000 +0200
++++ ncbi_cxx--12_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app 2014-06-24 21:50:48.000000000 +0200
+@@ -11,7 +11,7 @@
+ # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
+
+ ### BEGIN COPIED SETTINGS
+-LIB = xgridcgi xcgi xhtml xconnserv xconnect xutil xncbi
++LIB = xgridcgi xcgi xhtml xconnserv xthrserv xconnect xutil xncbi
+
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-more-patches.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-more-patches.patch
new file mode 100644
index 0000000..449bbc5
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-more-patches.patch
@@ -0,0 +1,136 @@
+--- ncbi_cxx--12_0_0/include/common/config/ncbiconf_msvc.h.ori 2013/09/30 13:46:04 59961
++++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_msvc.h 2013/09/30 14:10:44 59962
+@@ -62,10 +62,6 @@
+ #define HAVE_SYS_TYPES_H 1
+ #define HAVE_VSNPRINTF 1
+
+-#if _MSC_VER >= 1600
+-# define HAVE_IS_SORTED 1
+-#endif
+-
+ #if _MSC_VER < 1500
+ # define vsnprintf _vsnprintf
+ #endif
+@@ -136,10 +132,6 @@
+
+ #endif
+
+-#if _MSC_VER >= 1600
+-# define HAVE_NULLPTR 1
+-#endif
+-
+ /* Windows XP and above */
+ #define NCBI_WIN32_WINNT 0x0501
+ #if !defined(_WIN32_WINNT)
+--- ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h.ori 2013/09/30 13:46:04 59961
++++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h 2013/09/30 14:10:44 59962
+@@ -258,9 +258,6 @@
+ /* Define to 1 if you have `ios(_base)::register_callback'. */
+ #define HAVE_IOS_REGISTER_CALLBACK 1
+
+-/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
+-/* #undef HAVE_IS_SORTED */
+-
+ /* Define to 1 if you have the `lchown' function. */
+ /* #undef HAVE_LCHOWN */
+
+@@ -595,9 +592,6 @@
+ /* Define to 1 if wxWidgets is available. */
+ /* #undef HAVE_WXWIDGETS */
+
+-/* Define to 1 if nullptr keyword is available. */
+-/* #undef HAVE_NULLPTR */
+-
+ /* Define as const if the declaration of iconv() needs const. */
+ #if MAC_OS_X_VERSION_MIN_REQUIRED >= 1050 /* MAC_OS_X_VERSION_10_5 */
+ # define ICONV_CONST
+--- ncbi_cxx--12_0_0/include/common/ncbiconf_impl.h.ori 2013/09/30 13:46:04 59961
++++ ncbi_cxx--12_0_0/include/common/ncbiconf_impl.h 2013/09/30 14:10:44 59962
+@@ -115,6 +115,11 @@
+ || defined(__GXX_EXPERIMENTAL_CPP0X__)
+ # define NCBI_HAVE_CXX11 1
+ # endif
++# if defined(NCBI_HAVE_CXX11) \
++ || (defined(NCBI_COMPILER_MSVC) && _MSC_VER >= 1600)
++# define HAVE_IS_SORTED 1
++# define HAVE_NULLPTR 1
++# endif
+ #endif
+
+ #include <common/ncbi_skew_guard.h>
+--- ncbi_cxx--12_0_0/src/build-system/config.h.in.ori 2013/09/30 13:46:04 59961
++++ ncbi_cxx--12_0_0/src/build-system/config.h.in 2013/09/30 14:10:44 59962
+@@ -179,9 +179,6 @@
+ /* Define to 1 if you have `ios(_base)::register_callback'. */
+ #undef HAVE_IOS_REGISTER_CALLBACK
+
+-/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
+-#undef HAVE_IS_SORTED
+-
+ /* Define to 1 if you have the `lchown' function. */
+ #undef HAVE_LCHOWN
+
+@@ -391,9 +388,6 @@
+ /* Define to 1 if `min'/`max' templates are not implemented. */
+ #undef HAVE_NO_MINMAX_TEMPLATE
+
+-/* Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword. */
+-#undef HAVE_NULLPTR
+-
+ /* Define to 1 if ODBC libraries are available. */
+ #undef HAVE_ODBC
+
+--- ncbi_cxx--12_0_0/src/build-system/configure.ac.ori 2013/09/30 13:46:04 59961
++++ ncbi_cxx--12_0_0/src/build-system/configure.ac 2013/09/30 14:10:44 59962
+@@ -3351,17 +3351,6 @@
+ fi
+
+
+-AC_CACHE_CHECK([for std::is_sorted<> in <algorithm>], ncbi_cv_func_is_sorted,
+- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM(
+- [[#include <algorithm>]],
+- [[int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;]])],
+- [ncbi_cv_func_is_sorted=yes], [ncbi_cv_func_is_sorted=no])])
+-if test "$ncbi_cv_func_is_sorted" = yes; then
+- AC_DEFINE(HAVE_IS_SORTED, 1,
+- [Define to 1 if <algorithm> supplies `std::is_sorted<>'.])
+-fi
+-
+-
+
+ AC_CACHE_CHECK([for SysV semaphores], ncbi_cv_sys_semaphores,
+ AC_LINK_IFELSE([AC_LANG_PROGRAM([#include <sys/types.h>
+@@ -3498,7 +3487,7 @@
+ AC_CACHE_CHECK([whether the C compiler supports C99 restrict],
+ ncbi_cv_c_restrict,
+ [ncbi_cv_c_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_c_restrict" = "no" || break
+ AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
+ [ncbi_cv_c_restrict=$restrict], [])
+@@ -3518,7 +3507,7 @@
+ AC_CACHE_CHECK([whether the C++ compiler supports C99 restrict],
+ ncbi_cv_cxx_restrict,
+ [ncbi_cv_cxx_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_cxx_restrict" = "no" || break
+ AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
+ [ncbi_cv_cxx_restrict=$restrict], [])
+@@ -3623,14 +3612,6 @@
+ unaligned addresses.])
+ fi
+
+-AC_CACHE_CHECK([whether $CXX supports C++0x nullptr], ncbi_cv_cxx_nullptr,
+- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([], [[void * p = nullptr;]])],
+- [ncbi_cv_cxx_nullptr=yes], [ncbi_cv_cxx_nullptr=no])])
+-if test "$ncbi_cv_cxx_nullptr" = yes; then
+- AC_DEFINE(HAVE_NULLPTR, 1,
+- [Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword.])
+-fi
+-
+ ### Check for the availability of other packages
+ ### --------------------------------------------
+
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
index 80b23e9..9047c33 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
@@ -1,1337 +1,6 @@
---- ncbi_cxx--12_0_0/src/build-system/configure.ac.ori 2014-06-23 17:35:47.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/configure.ac 2014-06-23 17:36:41.000000000 +0200
-@@ -1,5 +1,5 @@
- #############################################################################
--# $Id: configure.ac 398256 2013-05-03 19:14:07Z rafanovi $
-+# $Id$
- # Derived from configure.in version 1.173.
- # ==========================================================================
- #
-@@ -38,7 +38,7 @@
- #
- #############################################################################
-
--AC_PREREQ(2.59)
-+AC_PREREQ(2.60)
-
- dnl Early setup, most crucially for locking. The diversion magic lets
- dnl this occur before AC_INIT, which already interferes with other
-@@ -71,7 +71,7 @@
- python, perl, jni, sqlite3, mimetic, sge, icu, sp, expat,
- sablot, libxml, libxslt, libexslt, xerces, xalan, zorba,
- oechem, muparser, hdf5, gif, jpeg, png, tiff, xpm,
-- magic, curl],
-+ magic, curl, gsoap, mongodb],
- [if test "${[with_]X-no}" != "no"; then
- AC_MSG_ERROR([incompatible options: --with-]X[ but --without-3psw])
- else
-@@ -143,6 +143,8 @@
- [ --with-bin-release build executables suitable for public release])
- AC_ARG_WITH(mt,
- [ --with-mt compile in a MultiThread-safe manner])
-+AC_ARG_WITH(openmp,
-+ [ --with-openmp enable OpenMP extensions for all projects])
- AC_ARG_WITH(64,
- [ --with-64 compile to 64-bit code])
- AC_ARG_WITH(universal,
-@@ -220,11 +222,15 @@
-
- ## NCBI packages
- AC_ARG_WITH(ncbi-c,
-+ [ --with-ncbi-c=DIR use NCBI C Toolkit installation in DIR])
-+AC_ARG_WITH(ncbi-c2,
- [ --without-ncbi-c do not use NCBI C Toolkit])
- AC_ARG_WITH(sss,
-+ [ --with-sss=DIR use NCBI SSS installation in DIR])
-+AC_ARG_WITH(sss2,
- [ --without-sss do not use NCBI SSS libraries])
- AC_ARG_WITH(sssutils,
-- [ --without-sssutils do not use NCBI SSS UTIL library])
-+ [ --without-utils do not use NCBI SSS UTIL library])
- AC_ARG_WITH(sssdb,
- [ --without-sssdb do not use NCBI SSS DB library])
- AC_ARG_WITH(included-sss,
-@@ -439,6 +445,14 @@
- [ --with-mimetic=DIR use libmimetic installation in DIR])
- AC_ARG_WITH(mimetic2,
- [ --without-mimetic do not use libmimetic])
-+AC_ARG_WITH(gsoap,
-+ [ --with-gsoap=DIR use gSOAP++ installation in DIR])
-+AC_ARG_WITH(gsoap2,
-+ [ --without-gsoap do not use gSOAP++])
-+AC_ARG_WITH(mongodb,
-+ [ --with-mongodb=DIR use MongoDB installation in DIR])
-+AC_ARG_WITH(mongodb2,
-+ [ --without-mongodb do not use MongoDB])
- AC_ARG_WITH(3psw,
- [ --with-3psw=std:netopt favor standard (system) builds of the above pkgs.])
- AC_ARG_WITH(3psw2,
-@@ -479,24 +493,28 @@
- [***** See also HTML documentation in ./doc/index.html *****])
-
-
-+AC_DIVERT_PUSH(PARSE_ARGS)
-+dnl As of Autoconf 2.60, this needs to run too early for config.log,
-+dnl to which AC_MSG_ERROR normally copies its output, to be available.
-+m4_rename([AS_MESSAGE_LOG_FD], [NCBI_ORIG_ASMLFD])
- #### Check the passed arguments against the list of available ones
- x_with_list="\
- debug max-debug symbols optimization profiling tcheck dll static static-exe \
- plugin-auto-load bundles bin-release mt 64 universal exe runpath hard-runpath \
--lfs limited-linker \
-+lfs limited-linker openmp \
- autodep suffix hostspec version execopy bincopy lib-rebuilds lib-rebuilds=ask \
- deactivation makefile-auto-update projects flat-makefile configure-dialog \
- check ncbi-public strip pch caution ccache distcc \
- ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
- geo included-geo \
- z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
--ftds mysql orbacus odbc freetype ftgl opengl mesa glut glew glew-mx \
-+ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
- bdb python perl jni sqlite3 icu boost boost-tag \
- sp expat sablot libxml libxslt libexslt xerces xalan zorba \
- oechem sge muparser hdf5 \
--gif jpeg tiff png xpm magic curl mimetic 3psw \
-+gif jpeg tiff png xpm magic curl mimetic gsoap mongodb 3psw \
- local-lbsm ncbi-crypt connext \
--serial objects dbapi app ctools gui algo internal gbench x"
-+serial objects dbapi app ctools gui algo internal gbench"
-
- changequote(, )dnl
- x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-@@ -522,7 +540,6 @@
- case "$x_arg" in
- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-- | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
- | --with-relative-runpath= | --x-includes= | --x-libraries= )
- AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
- ;;
-@@ -533,12 +550,11 @@
- | --with-universal=* | --with-tcheck=* \
- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-- | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
- | [[A-Z]*=*] \
- | --with-z=* | --with-bz2=* | --with-lzo=* \
-- | --with-pcre=* \
-+ | --with-pcre=* | --with-ncbi-c=* | --with-sss=* \
- | --with-gcrypt=* | --with-gnutls=* | --with-openssl=* \
-- | --with-krb5=* | --with-curl=* \
-+ | --with-krb5=* | --with-curl=* | --with-gsoap=* | --with-mongodb=* \
- | --with-sybase-local=* | --with-wxwidgets=* | --with-mimetic=* \
- | --with-ftds=* | --with-mysql=* | --with-fastcgi=* \
- | --with-sqlite3=* | --with-expat=* | --with-sablot=* \
-@@ -552,7 +568,7 @@
- | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
- | --x-includes=* | --x-libraries=* | --with-3psw=* \
- | --target=* | --with-runpath=* | --with-relative-runpath=* \
-- | --no-create | --no-recursion)
-+ | --help | --no-create | --no-recursion)
- ;;
-
- * )
-@@ -560,6 +576,8 @@
- ;;
- esac
- done
-+m4_rename([NCBI_ORIG_ASMLFD], [AS_MESSAGE_LOG_FD])
-+AC_DIVERT_POP
-
-
- if test "$with_gbench" = "yes" ; then
-@@ -604,6 +622,13 @@
- : ${with_optimization=no}
- fi
-
-+if test "$with_openmp" = yes; then
-+ if test "$with_mt" = no; then
-+ AC_MSG_ERROR([incompatible options: --without-mt but --with-openmp])
-+ fi
-+ : ${with_mt=yes}
-+fi
-+
- #### Check for special options
- if test "$with_extra_action" = "yes" ; then
- AC_MSG_ERROR([--with-extra-action must have a value after =])
-@@ -649,15 +674,10 @@
- *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
- esac
- fi
--if test -n "$with_projects"; then
-- case "$with_projects" in
-- /* ) abs_projects=$with_projects ;;
-- yes) abs_projects=$srcdir/projects ;;
-- * ) abs_projects=$srcdir/$with_projects ;;
-- esac
-- test -r "$abs_projects" || \
-- AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
--fi
-+# Generally save any originally specified flags.
-+USER_CFLAGS=$CFLAGS
-+USER_CXXFLAGS=$CXXFLAGS
-+USER_LDFLAGS=$LDFLAGS
-
- #### Always define this
- AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
-@@ -675,6 +695,23 @@
- #### Make some provisions for traditional operation
- AC_PROG_INSTALL
-
-+#### Point ICC at a suitable GCC version ASAP.
-+case "/$CXX" in
-+ */icpc )
-+ if test -d /usr/local/gcc; then
-+ case "`$CXX -dumpversion`:$host_cpu" in
-+ *:i?86) v=4.4.5 ;;
-+ ?.* | 1[[01]].* ) v=4.0.1 ;;
-+ *) v=4.4.2 ;;
-+ esac
-+ gcc=/usr/local/gcc/$v/bin/gcc
-+ if test -x $gcc; then
-+ CC="$CC -gcc-name=$gcc"
-+ CXX="$CXX -gcc-name=$gcc"
-+ fi
-+ fi
-+ ;;
-+esac
-
- #### C and C++ compilers
- AC_LANG(C++)
-@@ -987,6 +1024,30 @@
- ;;
- * ) NCBIATOMIC_LIB=xncbi ;;
- esac
-+ case "$compiler" in
-+ GCC )
-+ if $CC -v | grep clang >/dev/null; then
-+ :
-+ # Will allegedly support -openmp at some point, but as of 3.4,
-+ # just parses it as specifying an output filename: -o penmp.
-+ else
-+ case "$compiler_version" in
-+ [[123]]?? | 4[[01]]? ) ;;
-+ * ) : ${OPENMP_FLAGS=-fopenmp} ;;
-+ esac
-+ fi
-+ ;;
-+ ICC )
-+ : ${OPENMP_FLAGS=-openmp}
-+ ;;
-+ WorkShop* )
-+ : ${OPENMP_FLAGS=-xopenmp=parallel}
-+ ;;
-+ esac
-+ if test "$with_openmp" = yes; then
-+ MT_FLAG="$MT_FLAG $OPENMP_FLAGS"
-+ OPENMP_FLAGS=
-+ fi
- mt_sfx="MT"
- NCBI_FEATURE(MT)
- else
-@@ -994,6 +1055,7 @@
- MT_FLAG=
- THREAD_LIBS=
- NCBIATOMIC_LIB=
-+ OPENMP_FLAGS=
- mt_sfx=""
- fi
- MT_SFX="${mt_sfx}"
-@@ -1006,6 +1068,9 @@
- APP_LDFLAGS=
- DLL_LDFLAGS=
-
-+### Should go before any test compiler runs
-+AC_GNU_SOURCE
-+
- case "$host_os:$compiler" in
- darwin*:GCC )
- AC_CACHE_CHECK([whether $CC supports -Wl,-rpath],
-@@ -1047,6 +1112,47 @@
- ;;
- esac
-
-+case "$compiler:$compiler_version" in
-+ GCC:4[[0-6]]? | ICC:1[[01]]?? )
-+ ncbi_cv_prog_cxx_11=no
-+ ncbi_cv_prog_c_99=no
-+ ;;
-+ ICC:* )
-+ ncbi_cv_prog_c_99='-std=gnu99 -fgnu89-inline'
-+ ;;
-+esac
-+
-+AC_CACHE_CHECK([how to enable C++ '11 features in $CXX],
-+ ncbi_cv_prog_cxx_11,
-+ [orig_CXX=$CXX
-+ ncbi_cv_prog_cxx_11=no
-+ for x in -std=gnu++11 -std=gnu++0x; do
-+ CXX="$orig_CXX $x"
-+ AC_LINK_IFELSE([AC_LANG_PROGRAM([], [])],
-+ [ncbi_cv_prog_cxx_11=$x])
-+ test "x$ncbi_cv_prog_cxx_11" = "xno" || break
-+ done
-+ CXX=$orig_CXX])
-+test "$ncbi_cv_prog_cxx_11" = no || CXX="$CXX $ncbi_cv_prog_cxx_11"
-+
-+AC_LANG_PUSH(C)
-+AC_CACHE_CHECK([how to enable C '11 or at least '99 features in $CC],
-+ ncbi_cv_prog_c_99,
-+ [orig_CC=$CC
-+ ncbi_cv_prog_c_99=no
-+ for x in -xc99=all "-std=gnu11 -fgnu89-inline" \
-+ "-std=gnu1x -fgnu89-inline" \
-+ "-std=gnu99 -fgnu89-inline" \
-+ "-std=gnu9x -fgnu89-inline"; do
-+ CC="$orig_CC $x"
-+ AC_LINK_IFELSE([AC_LANG_PROGRAM([], [])],
-+ [ncbi_cv_prog_c_99=$x])
-+ test "x$ncbi_cv_prog_c_99" = "xno" || break
-+ done
-+ CC=$orig_CC])
-+AC_LANG_POP(C)
-+test "$ncbi_cv_prog_c_99" = no || CC="$CC $ncbi_cv_prog_c_99"
-+
- #### Provide default environment setup for known platforms/compilers
- DEPFLAGS="-M"
- DEPFLAGS_POST="" # Needed for VisualAge
-@@ -1059,7 +1165,15 @@
- ;;
-
- solaris*:GCC )
-- CPPFLAGS="-D_XOPEN_SOURCE=500 $CPPFLAGS"
-+ # On Solaris, GCC defaults to setting _XOPEN_SOURCE (to 500) only
-+ # in C++ mode. Set it for C code as well to ensure consistent
-+ # header behavior, taking care to match the C standard version
-+ # (as enforced by <sys/feature_tests.h>).
-+ case "$ncbi_cv_prog_c_99" in
-+ no) CC="$CC -D_XOPEN_SOURCE=500" ;;
-+ *) CC="$CC -D_XOPEN_SOURCE=600" ;;
-+ esac
-+
- STRIP="@:"
- ;;
-
-@@ -1202,11 +1316,19 @@
- LDFLAGS="-flat_namespace $LDFLAGS"
-
- if test "$with_ncbi_public" = yes; then
-+ sdks='/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk'
-+ case "$host_os" in
-+ darwin?.* | darwin10.* ) # Mac OS X 10.6.x or older
- TARGET='-mmacosx-version-min=10.5'
-- sdks='/Developer/SDKs/MacOSX10.6.sdk /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.6.sdk'
-+ sdks="/Developer/SDKs/MacOSX10.6.sdk"
- if test "$with_64:${with_universal-no}" != "yes:no"; then
- sdks="/Developer/SDKs/MacOSX10.5.sdk $sdks"
- fi
-+ ;;
-+ * )
-+ TARGET='-mmacosx-version-min=10.7'
-+ ;;
-+ esac
- for sdk in $sdks; do
- if test -d "$sdk"; then
- TARGET="-isysroot $sdk $TARGET"
-@@ -1487,8 +1609,8 @@
- ;;
- GCC:* )
- DEF_FAST_FLAGS="-O3 -finline-functions -fstrict-aliasing"
-- case "$host_os" in
-- freebsd* ) ;;
-+ case "$host_os:$host_cpu:$compiler_version" in
-+ freebsd* | solaris*:*86*:* | *:4[[5-9]]? | *:[[5-9]]?? ) ;;
- * ) DEF_FAST_FLAGS="$DEF_FAST_FLAGS -ffast-math" ;;
- esac
- if test "$with_profiling" != "yes"; then
-@@ -1587,13 +1709,9 @@
- solaris* )
- CONF_f_runpath="-R"
- ;;
-- linux*:GCC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
-+ linux*:[[GI]]CC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
- CONF_f_runpath="-Wl,-rpath,"
- ;;
-- linux*:ICC )
-- # trying to use "-Wl,-rpath," here sends "ld" to endless 100% CPU loop
-- CONF_f_runpath="-Xlinker -rpath -Xlinker "
-- ;;
- irix*:* | linux*:KCC | *:Compaq )
- CONF_f_runpath="-rpath "
- ;;
-@@ -1697,8 +1815,11 @@
- LINK="$LINK -Kc++"
- ;;
- ICC:1???:* )
-- APP_LDFLAGS="-static-intel $APP_LDFLAGS"
-- DLL_LDFLAGS="-static-intel -nodefaultlibs $DLL_LDFLAGS"
-+ # Suppress "warning #10237: -lcilkrts linked in dynamically, static
-+ # library not available" which is not a problem in practice due to
-+ # as-needed linkage.
-+ APP_LDFLAGS="-static-intel -diag-disable 10237 $APP_LDFLAGS"
-+ DLL_LDFLAGS="-static-intel -diag-disable 10237 -nodefaultlibs $DLL_LDFLAGS"
- # Redundant for apps, but necessary for plugins to be adequately
- # self-contained, at least on 32-bit Linux.
- LIBS="$LIBS -lstdc++"
-@@ -1817,18 +1938,6 @@
-
- #### Intel compiler:: common flags and definitions
- if test "$compiler" = "ICC" ; then
-- if test -d /usr/local/gcc; then
-- case "$compiler_version:$HOST_CPU" in
-- *:i?86) v=4.4.5 ;;
-- ???:* | 1[[01]]??:* ) v=4.0.1 ;;
-- *) v=4.4.2 ;;
-- esac
-- gcc=/usr/local/gcc/$v/bin/gcc
-- if test -x $gcc; then
-- CC="$CC -gcc-name=$gcc"
-- CXX="$CXX -gcc-name=$gcc"
-- fi
-- fi
- if test -n "$icc_license" ; then
- icc_CC="$CC"
- icc_CXX="$CXX"
-@@ -2073,6 +2182,7 @@
- fi
-
- AC_PATH_PROG(TOUCH, touch, [], /bin:/usr/bin:$PATH)
-+dnl AC_PATH_PROG(GREP, grep)
- AC_PROG_EGREP
- AC_MSG_CHECKING([how to run $EGREP quietly])
- if test -z "`echo foo | $EGREP -q fo+ 2>>config.log || echo $?`"; then
-@@ -2086,6 +2196,16 @@
-
- AC_CHECK_PROG(VALGRIND_PATH, valgrind, valgrind)
-
-+AC_PATH_PROG(LDD, ldd)
-+if test -n "$LDD"; then
-+ AC_MSG_CHECKING([whether $LDD accepts -r])
-+ if $LDD -r /bin/ls >/dev/null 2>&1; then
-+ AC_MSG_RESULT(yes)
-+ LDD_R="$LDD -r"
-+ else
-+ AC_MSG_RESULT(no)
-+ fi
-+fi
-
- #### Check if "${build_root}" is defined; provide a default one
- if test -n "${with_build_root}" ; then
-@@ -2170,9 +2290,6 @@
- fi
-
-
--### Should go before any test compiler runs
--AC_GNU_SOURCE
--
- #### Determine whether this is implicitly a 64-bit platform
- AC_TYPE_SIZE_T
- if test "${with_universal-no}" = "no"; then
-@@ -2342,7 +2459,7 @@
- fi
- ;;
- *:ICC )
-- runpath="$runpath -Xlinker -rpath-link -Xlinker \$(libdir)"
-+ runpath="$runpath -Wl,-rpath-link,\$(libdir)"
- ;;
- esac
- elif test "$with_runpath" = "yes" -o "$with_dll" != "no" ; then
-@@ -2658,15 +2775,30 @@
- dbgrx1="$wsrx-g[^cx$wschars]*$wsrx"
- dbgrx2="$wsrx-gx*coff[0-9+]*$wsrx"
- optrx="$wsrx-x*O[0-9s]*$wsrx"
-+ NDEB_CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-+ NDEB_CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-+ NDEB_LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
- if test "$with_symbols" = "no" ; then
-- CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-- CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-- LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-+ CFLAGS=$NDEB_CFLAGS
-+ CXXFLAGS=$NDEB_CXXFLAGS
-+ LDFLAGS=$NDEB_LDFLAGS
- else
- echo " $CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || CFLAGS="$CFLAGS -g"
- echo " $CXXFLAGS "| $EGREP_Q "$dbgrx1|$dbgrx2" || CXXFLAGS="$CXXFLAGS -g"
- echo " $LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || LDFLAGS="$LDFLAGS -g"
- STRIP="@:"
-+ case "$compiler:$compiler_version" in
-+ GCC:4[89]? | GCC:[5-9]? | GCC:???? )
-+ # GCC 4.8 defaults to DWARF 4, which Totalview for one
-+ # can't handle; roll back to version 3 by default.
-+ echo " $USER_CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
-+ CFLAGS="$NDEB_CFLAGS -gdwarf-3"
-+ echo " $USER_CXXFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
-+ CXXFLAGS="$NDEB_CXXFLAGS -gdwarf-3"
-+ echo " $USER_LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
-+ LDFLAGS="$NDEB_LDFLAGS -gdwarf-3"
-+ ;;
-+ esac
- fi
-
- NOPT_CFLAGS=` echo " $CFLAGS " | sed "s/$optrx/ /g"`
-@@ -3024,9 +3156,9 @@
- ### Check for other standard library functions
-
- AC_FUNC_VPRINTF
--AC_CHECK_FUNCS(euidaccess atoll basename lchown fseeko getpagesize \
-- getpass getpassphrase getpwuid getrusage gettimeofday \
-- getuid memrchr readpassphrase readv usleep \
-+AC_CHECK_FUNCS(euidaccess atoll basename lchown fseeko getgrouplist \
-+ getpagesize getpass getpassphrase getpwuid getrusage \
-+ gettimeofday getuid memrchr readpassphrase readv usleep \
- asprintf vasprintf vsnprintf select statfs statvfs \
- strcasecmp strlcat strlcpy strdup strndup strtok_r \
- sysmp timegm utimes lutimes writev)
-@@ -3253,17 +3385,6 @@
- fi
-
-
--AC_CACHE_CHECK([for std::is_sorted<> in <algorithm>], ncbi_cv_func_is_sorted,
-- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM(
-- [[#include <algorithm>]],
-- [[int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;]])],
-- [ncbi_cv_func_is_sorted=yes], [ncbi_cv_func_is_sorted=no])])
--if test "$ncbi_cv_func_is_sorted" = yes; then
-- AC_DEFINE(HAVE_IS_SORTED, 1,
-- [Define to 1 if <algorithm> supplies `std::is_sorted<>'.])
--fi
--
--
-
- AC_CACHE_CHECK([for SysV semaphores], ncbi_cv_sys_semaphores,
- AC_LINK_IFELSE([AC_LANG_PROGRAM([#include <sys/types.h>
-@@ -3400,7 +3521,7 @@
- AC_CACHE_CHECK([whether the C compiler supports C99 restrict],
- ncbi_cv_c_restrict,
- [ncbi_cv_c_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_c_restrict" = "no" || break
- AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
- [ncbi_cv_c_restrict=$restrict], [])
-@@ -3420,7 +3541,7 @@
- AC_CACHE_CHECK([whether the C++ compiler supports C99 restrict],
- ncbi_cv_cxx_restrict,
- [ncbi_cv_cxx_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_cxx_restrict" = "no" || break
- AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
- [ncbi_cv_cxx_restrict=$restrict], [])
-@@ -3525,14 +3646,6 @@
- unaligned addresses.])
- fi
-
--AC_CACHE_CHECK([whether $CXX supports C++0x nullptr], ncbi_cv_cxx_nullptr,
-- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([], [[void * p = nullptr;]])],
-- [ncbi_cv_cxx_nullptr=yes], [ncbi_cv_cxx_nullptr=no])])
--if test "$ncbi_cv_cxx_nullptr" = yes; then
-- AC_DEFINE(HAVE_NULLPTR, 1,
-- [Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword.])
--fi
--
- ### Check for the availability of other packages
- ### --------------------------------------------
-
-@@ -3630,7 +3743,16 @@
- dnl NCBI_CHECK_LIBS(FUSE, fuse, fuse_loop)
- AC_SEARCH_LIBS(fuse_loop, fuse, [NCBI_PACKAGE(FUSE)])
- LIBS=$orig_LIBS
-+# Temporarily drop OpenMP flags for this test, as some toolchains count
-+# its support library's indirect use of librt when building applications
-+# but not when building shared libraries with --no-undefined.
-+orig_CXXFLAGS=$CXXFLAGS
-+orig_LDFLAGS=$LDFLAGS
-+CXXFLAGS=`echo $CXXFLAGS | sed -e 's/[[^ ]]*openmp[[^ ]]*//g'`
-+LDFLAGS=`echo $LDFLAGS | sed -e 's/[[^ ]]*openmp[[^ ]]*//g'`
- NCBI_CHECK_LIBS(RT, rt posix4, clock_gettime)
-+CXXFLAGS=$orig_CXXFLAGS
-+LDFLAGS=$orig_LDFLAGS
- NCBI_CHECK_LIBS(DEMANGLE, demangle, cplus_demangle)
- # Add to (orig_)LIBS if present for the sake of corelib and the
- # following call to AC_CHECK_FUNCS.
-@@ -3734,7 +3856,6 @@
- NCBI_PACKAGE(LocalBZ2)
- fi
-
--: ${LZO_PATH=$NCBI/lzo2}
- if test -d "$LZO_PATH"; then
- NCBI_FIX_DIR(LZO_PATH)
- fi
-@@ -3767,7 +3888,7 @@
- ## SSL/TLS libraries
- case "$with_gcrypt" in
- no ) ac_cv_path_LIBGCRYPT_CONFIG=no ;;
-- yes | '' ) : ${GCRYPT_PATH=$NCBI/gcrypt} ;;
-+ yes | '' ) ;;
- * ) GCRYPT_PATH=$with_gcrypt ;;
- esac
- if test -d "$GCRYPT_PATH"; then
-@@ -3802,13 +3923,16 @@
-
- case "$with_gnutls" in
- no ) ac_cv_path_LIBGNUTLS_CONFIG=no ;;
-- yes | '' ) : ${GNUTLS_PATH=$NCBI/gnutls} ;;
-+ yes | '' ) ;;
- * ) GNUTLS_PATH=$with_gnutls ;;
- esac
- if test -d "$GNUTLS_PATH"; then
- NCBI_FIX_DIR(GNUTLS_PATH)
-+ gnutls_config_path=${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin
-+else
-+ gnutls_config_path=$PATH
- fi
--AC_PATH_PROG(LIBGNUTLS_CONFIG, libgnutls-config, [], [${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin:$PATH])
-+AC_PATH_PROG(LIBGNUTLS_CONFIG, libgnutls-config, [], [$gnutls_config_path])
-
- if test "x$with_gnutls" != xno; then
- if test -x "$LIBGNUTLS_CONFIG"; then
-@@ -3817,7 +3941,7 @@
- test "x$p" = "x/usr" || GNUTLS_PATH=$p
- fi
- else
-- LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls"
-+ LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls --static"
- $LIBGNUTLS_CONFIG --exists >/dev/null 2>&1 || LIBGNUTLS_CONFIG=no
- fi
- case "$LIBGNUTLS_CONFIG" in
-@@ -3846,6 +3970,10 @@
- $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS)
- if test "x$with_gnutls" != xno -a -n "$GNUTLS_CONFIG_LIBS"; then
- NCBI_RPATHIFY_OUTPUT(GNUTLS_LIBS, [echo $GNUTLS_CONFIG_LIBS], [$no_usr_lib])
-+ # Conservatively build against gcrypt if available even when gnutls
-+ # uses nettle instead, because gcrypt needs explicit initialization
-+ # to be thread-safe, but gnutls's headers don't indicate which
-+ # underlying crypto library it's actually using.
- case "$GNUTLS_INCLUDE" in
- *$GCRYPT_INCLUDE* ) ;;
- * ) GNUTLS_INCLUDE="$GNUTLS_INCLUDE $GCRYPT_INCLUDE" ;;
-@@ -4108,7 +4236,8 @@
- SYBASE_DBLIBS="$SYBASE_LPATH $SYBASE_DBLIBS"
- SYBASE_DLLS="$SYBASE_DLLLIST"
-
-- AC_CACHE_CHECK([for Sybase in $SYBASE_PATH], ncbi_cv_lib_sybase,
-+ AC_CACHE_CHECK([for Sybase${SYBASE_PATH:+ in $SYBASE_PATH}],
-+ ncbi_cv_lib_sybase,
- [CPPFLAGS="$SYBASE_INCLUDE $orig_CPPFLAGS"
- LIBS="$SYBASE_LIBS $SYBASE_DLLS $SYBASE_NETWORK_LIBS $DL_LIBS $orig_LIBS"
- AC_LINK_IFELSE([AC_LANG_PROGRAM(
-@@ -4216,7 +4345,8 @@
- AC_MSG_NOTICE([Using bundled FreeTDS (version $ftds_ver) from $FTDS_PATH])
- else
- FTDS_LIBS="$FTDS_CTLIBS"
-- AC_CACHE_CHECK([for FreeTDS in $FTDS_PATH], ncbi_cv_lib_freetds,
-+ AC_CACHE_CHECK([for FreeTDS${FTDS_PATH:+ in $FTDS_PATH}],
-+ ncbi_cv_lib_freetds,
- [CPPFLAGS="$FTDS_INCLUDE $orig_CPPFLAGS"
- LIBS="$FTDS_LIBS $NETWORK_LIBS $orig_LIBS"
- AC_LINK_IFELSE([AC_LANG_PROGRAM(
-@@ -4281,7 +4411,7 @@
- # Kill off single quotes, due to later requoting
- : ${MYSQL_INCLUDE=`$mysql_config --include | tr -d \'`}
- NCBI_RPATHIFY_OUTPUT_COND(MYSQL_LIBS, $mysql_config --libs${mt_sfx:+_r},
-- [s/'//g; ])
-+ [s/'//g; $no_usr_lib])
- AC_CACHE_CHECK([whether MySQL works], ncbi_cv_lib_mysql,
- [CPPFLAGS="$MYSQL_INCLUDE $orig_CPPFLAGS"
- LIBS="$MYSQL_LIBS $orig_LIBS"
-@@ -4310,7 +4440,6 @@
- if test "$with_bdb" != "no" ; then
- case "$with_bdb" in
- yes | "" )
-- : ${BERKELEYDB_PATH:="$NCBI/BerkeleyDB"}
- ;;
- */*)
- BERKELEYDB_PATH=$with_bdb
-@@ -4351,7 +4480,8 @@
- else
- BERKELEYDB_STATIC_LIBS=${BERKELEYDB_LIBS}
- fi
-- AC_CACHE_CHECK([for Berkeley DB libraries in $BERKELEYDB_PATH],
-+ AC_CACHE_CHECK(
-+ [for Berkeley DB libraries${BERKELEYDB_PATH:+ in $BERKELEYDB_PATH}],
- ncbi_cv_lib_berkeley_db,
- [CPPFLAGS="$BERKELEYDB_INCLUDE $orig_CPPFLAGS"
- LIBS="$BERKELEYDB_LIBS $orig_LIBS"
-@@ -4450,7 +4580,8 @@
- NCBI_RPATHIFY(ODBC_LIBS, ${ODBC_LIBPATH}, [ -lodbc -lodbcinst])
- CPPFLAGS="$ODBC_INCLUDE $orig_CPPFLAGS"
- LIBS="$ODBC_LIBS $orig_LIBS"
-- AC_CACHE_CHECK([for ODBC libraries in $ODBC_PATH], ncbi_cv_lib_odbc,
-+ AC_CACHE_CHECK([for ODBC libraries${ODBC_PATH:+ in $ODBC_PATH}],
-+ ncbi_cv_lib_odbc,
- [AC_LINK_IFELSE([AC_LANG_PROGRAM(
- [[#include <sql.h>]],
- [[SQLHDBC hdbc; SQLCHAR* cp = (SQLCHAR*) "x";
-@@ -4542,7 +4673,7 @@
- AC_PATH_PROG(PERL, perl, [], [$PERL_PATH/bin:$PATH])
- if test -x "$PERL"; then
- PERL_ARCHLIB=`$PERL -MConfig -e 'print \$Config{archlibexp};'`
-- PERL_FLAGS=`$PERL -MConfig -e 'print \$Config{cppflags};'`
-+ PERL_FLAGS=`$PERL -MConfig -e 'print join " ", grep /^-[[DI]]/, split /\\s+/, \$Config{cppflags};'`
- PERL_INCLUDE="-I$PERL_ARCHLIB/CORE $PERL_FLAGS"
- PERL_DEPS=`$PERL -MConfig -e 'print \$Config{libs};'`
- NCBI_RPATHIFY(PERL_LIBS, $PERL_ARCHLIB/CORE, [ -lperl $PERL_DEPS])
-@@ -4603,9 +4734,7 @@
-
- ## Boost
- if test "$with_boost" != "no"; then
-- if test "${with_boost-yes}" = yes; then
-- : ${BOOST_PATH=$NCBI/boost}
-- else
-+ if test "${with_boost-yes}" != yes; then
- BOOST_PATH=$with_boost
- fi
- if test -d "$BOOST_PATH"; then
-@@ -4644,17 +4773,22 @@
- if test -d `echo $BOOST_INCLUDE | sed -e 's/^-I//'`/boost-${ncbi_cv_lib_boost_version}/boost; then
- BOOST_INCLUDE=$BOOST_INCLUDE/boost-${ncbi_cv_lib_boost_version}
- fi
-- case "$ncbi_compiler" in
-- MIPSPRO)
-+ case "$compiler:$ncbi_compiler_ver" in
-+ MIPSpro*)
- BOOST_INCLUDE="$BOOST_INCLUDE $BOOST_INCLUDE/boost/compatibility/cpp_c_headers"
- ;;
-- WORKSHOP)
-+ WorkShop*)
- # Boost.Test's macros yield a *lot* of spurious "should not initialize
- # a non-const reference with a temporary" warnings, to the point of
- # overwhelming the compiler in some cases; turn them off altogether
- # when using Boost at all.
- BOOST_INCLUDE="$BOOST_INCLUDE -erroff=reftotemp"
- ;;
-+ GCC*:4[[7-9]]* | GCC*:5*)
-+ # Some portions of Boost also have a lot of "unused" typedefs
-+ # from concept checking.
-+ BOOST_INCLUDE="$BOOST_INCLUDE -Wno-unused-local-typedefs"
-+ ;;
- esac
- case "$ncbi_cv_lib_boost_version" in
- 0_* | 1_[[0-9]] | 1_[[0-9]]_* | 1_[[0-2]][[0-9]] | 1_[[0-2]][[0-9]]_* ) ;;
-@@ -4666,7 +4800,7 @@
- fi
- with_boost=no
- ;;
-- 1_3[[5-9]] | 1_3[[5-9]]_* | 1_4* | 1_5[[0-2]] | 1_5[[0-2]]_* ) ;;
-+ 1_3[[5-9]] | 1_3[[5-9]]_* | 1_4* | 1_5[[0-3]] | 1_5[[0-3]]_* ) ;;
- '' ) with_boost=no ;;
- * )
- AC_MSG_WARN(
-@@ -4751,7 +4885,9 @@
- BOOST_REGEX_STATIC_LIBS=$BOOST_REGEX_LIBS
- fi
-
-- AC_CACHE_CHECK([for Boost.Regex in $BOOST_PATH], ncbi_cv_lib_boost_regex,
-+ in_path=${BOOST_PATH:+ in $BOOST_PATH}
-+
-+ AC_CACHE_CHECK([for Boost.Regex$in_path], ncbi_cv_lib_boost_regex,
- CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
- LIBS="$BOOST_LIBPATH $BOOST_REGEX_LIBS $RT_LIBS $orig_LIBS"
- [AC_LINK_IFELSE(
-@@ -4759,7 +4895,7 @@
- [[throw boost::regex_error(boost::regex_constants::error_stack);]])],
- [ncbi_cv_lib_boost_regex=yes], [ncbi_cv_lib_boost_regex=no])])
-
-- AC_CACHE_CHECK([for Boost.Spirit in $BOOST_PATH], ncbi_cv_lib_boost_spirit,
-+ AC_CACHE_CHECK([for Boost.Spirit$in_path], ncbi_cv_lib_boost_spirit,
- CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
- LIBS="$RT_LIBS $orig_LIBS"
- [AC_LINK_IFELSE(
-@@ -4774,7 +4910,7 @@
- BOOST_SYSTEM_STATIC_LIBS=$BOOST_SYSTEM_LIBS
- fi
-
-- AC_CACHE_CHECK([for Boost.System in $BOOST_PATH], ncbi_cv_lib_boost_system,
-+ AC_CACHE_CHECK([for Boost.System$in_path], ncbi_cv_lib_boost_system,
- CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
- LIBS="$BOOST_LIBPATH $BOOST_SYSTEM_LIBS $RT_LIBS $orig_LIBS"
- [AC_LINK_IFELSE(
-@@ -4785,6 +4921,24 @@
- BOOST_SYSTEM_LIBS=
- BOOST_SYSTEM_STATIC_LIBS=])])
-
-+ boost_fs_lib=-lboost_filesystem${BOOST_TAG}
-+ if test -f "$BOOST_LIBPATH_/libboost_filesystem${BOOST_TAG}-static.a"; then
-+ boost_fs_static_lib=-lboost_filesystem${BOOST_TAG}-static
-+ else
-+ boost_fs_static_lib=$boost_fs_lib
-+ fi
-+ BOOST_FILESYSTEM_LIBS="$boost_fs_lib $BOOST_SYSTEM_LIBS"
-+ BOOST_FILESYSTEM_STATIC_LIBS="$boost_fs_static_lib $BOOST_SYSTEM_STATIC_LIBS"
-+
-+ AC_CACHE_CHECK([for Boost.Filesystem$in_path], ncbi_cv_lib_boost_filesystem,
-+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$BOOST_LIBPATH $BOOST_FILESYSTEM_LIBS $RT_LIBS $orig_LIBS"
-+ [AC_LINK_IFELSE(
-+ [AC_LANG_PROGRAM([[#include <boost/filesystem.hpp>]],
-+ [[return boost::filesystem::portable_name("foo");]])],
-+ [ncbi_cv_lib_boost_filesystem=yes],
-+ [ncbi_cv_lib_boost_filesystem=no])])
-+
- BOOST_TEST_PEM_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}
- if test -f "$BOOST_LIBPATH_/libboost_prg_exec_monitor${BOOST_TAG}-static.a"; then
- BOOST_TEST_PEM_STATIC_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}-static
-@@ -4813,7 +4967,7 @@
- BOOST_TEST_TEM_LIBS=$BOOST_TEST_TEM_STATIC_LIBS
- BOOST_TEST_UTF_LIBS=$BOOST_TEST_UTF_STATIC_LIBS
-
-- AC_CACHE_CHECK([for Boost.Test in $BOOST_PATH], ncbi_cv_lib_boost_test,
-+ AC_CACHE_CHECK([for Boost.Test$in_path], ncbi_cv_lib_boost_test,
- CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
- LIBS="$RT_LIBS $orig_LIBS"
- found=
-@@ -4853,7 +5007,7 @@
- BOOST_THREAD_STATIC_LIBS=$BOOST_THREAD_LIBS
- fi
-
-- AC_CACHE_CHECK([for Boost.Threads in $BOOST_PATH], ncbi_cv_lib_boost_thread,
-+ AC_CACHE_CHECK([for Boost.Threads$in_path], ncbi_cv_lib_boost_thread,
- CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
- LIBS="$BOOST_LIBPATH $BOOST_THREAD_LIBS $RT_LIBS $orig_LIBS"
- [AC_LINK_IFELSE(
-@@ -4864,12 +5018,25 @@
- BOOST_INCLUDE=
- BOOST_LIBPATH=
- BOOST_TAG=
-+ ncbi_cv_lib_boost_filesystem=no
- ncbi_cv_lib_boost_regex=no
- ncbi_cv_lib_boost_spirit=no
-+ ncbi_cv_lib_boost_system=no
- ncbi_cv_lib_boost_test=no
- ncbi_cv_lib_boost_thread=no
- fi
-
-+if test "$ncbi_cv_lib_boost_filesystem" != "no"; then
-+ dnl AC_DEFINE(HAVE_BOOST_FILESYSTEM, 1,
-+ dnl [Define to 1 if the `Boost.Filesystem' library is available.])
-+ NCBI_PACKAGE(Boost.Filesystem)
-+else
-+ boost_fs_lib=
-+ boost_fs_static_lib=
-+ BOOST_FILESYSTEM_LIBS=
-+ BOOST_FILESYSTEM_STATIC_LIBS=
-+fi
-+
- if test "$ncbi_cv_lib_boost_regex" != "no"; then
- AC_DEFINE(HAVE_BOOST_REGEX, 1,
- [Define to 1 if the `Boost.Regex' library is available.])
-@@ -4927,7 +5094,10 @@
-
- ## NCBI C Toolkit
- if test "$with_ncbi_c" != "no" ; then
-- NCBI_C_PATH=${NCBI_C_PATH:="$NCBI"}
-+ if test "${with_ncbi_c-yes}" != yes; then
-+ NCBI_C_PATH=$with_ncbi_c
-+ fi
-+ : ${NCBI_C_PATH="$NCBI"}
- if test "$ncbi_compiler" = ICC -a -d "$NCBI_C_PATH/ncbi_icc"; then
- NCBI_C_PATH=$NCBI_C_PATH/ncbi_icc
- fi
-@@ -4949,7 +5119,8 @@
- NCBI_C_ncbi="-lncbi"
- fi
- NCBI_C_LIBPATH="-L$NCBI_C_LIBPATH"
-- AC_CACHE_CHECK([for the NCBI C toolkit in $NCBI_C_PATH], ncbi_cv_lib_ctools,
-+ AC_CACHE_CHECK([for the NCBI C toolkit${NCBI_C_PATH:+ in $NCBI_C_PATH}],
-+ ncbi_cv_lib_ctools,
- [CPPFLAGS="$NCBI_C_INCLUDE $orig_CPPFLAGS"
- LIBS="$NCBI_C_LIBPATH $NCBI_C_ncbi $NETWORK_LIBS $orig_LIBS"
- AC_LINK_IFELSE([AC_LANG_PROGRAM(
-@@ -5000,11 +5171,7 @@
-
- ## OpenGL
- if test "$with_opengl" != "no"; then
-- if test "${with_opengl-yes}" = yes; then
-- if test -d $NCBI/MesaGL; then
-- : ${OPENGL_PATH=$NCBI/MesaGL}
-- fi
-- else
-+ if test "${with_opengl-yes}" != yes; then
- OPENGL_PATH=$with_opengl
- fi
- if test -d "$OPENGL_PATH"; then
-@@ -5101,7 +5268,6 @@
- else
- OSMESA_STATIC_LIBS=$OSMESA_LIBS
- fi
-- : ${GLUT_PATH=$NCBI/glut}
- if test "$with_glut" != "no"; then
- if test "${with_glut-yes}" != "yes"; then
- GLUT_PATH=$with_glut
-@@ -5121,7 +5287,6 @@
- NCBI_MISSING_PACKAGE(glut)
- fi
- fi
-- : ${GLEW_PATH=$NCBI/glew}
- if test "$with_glew" != "no"; then
- if test "${with_glew-yes}" != "yes"; then
- GLEW_PATH=$with_glew
-@@ -5214,7 +5379,7 @@
- : ${with_wxwidgets_ucs=no}
- if test "$with_wxwidgets" != "no" ; then
- case "$with_wxwidgets" in
-- yes | "" ) : ${WXWIDGETS_PATH=$NCBI/wxwidgets} ;;
-+ yes | "" ) ;;
- * ) WXWIDGETS_PATH=$with_wxwidgets ;;
- esac
- if test -d "$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-@@ -5283,12 +5448,13 @@
- libsed=$basesed
- ;;
- esac
-- AC_CACHE_CHECK([for wxWidgets in $WXWIDGETS_ARCH_PATH],
-+ AC_CACHE_CHECK(
-+ [for wxWidgets${WXWIDGETS_ARCH_PATH:+ in $WXWIDGETS_ARCH_PATH}],
- ncbi_cv_lib_wxwidgets,
- [if test -x "$wxconf" ; then
- WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
- NCBI_RPATHIFY_OUTPUT(WXWIDGETS_LIBS, ["$wxconf" $wxcfflags --libs],
-- [$libsed; ])
-+ [$libsed; s/ -lm / /g;])
-
- CPPFLAGS="$WXWIDGETS_INCLUDE $orig_CPPFLAGS"
- LIBS="$WXWIDGETS_LIBS $orig_LIBS"
-@@ -5315,12 +5481,12 @@
- else
- NCBI_PACKAGE(wxWidgets)
- case "`"$wxconf" $wxcfflags --version`" in
-- 2.[[89]].* | 2.[[0-9]][[0-9]]* )
-- NCBI_PACKAGE(wx2.8)
-- wxlibs=std,richtext,aui
-+ 1.* | 2.[[0-7]].*)
-+ wxlibs=std
- ;;
- *)
-- wxlibs=std
-+ NCBI_PACKAGE(wx2.8)
-+ wxlibs=std,richtext,aui,propgrid
- ;;
- esac
- # The "yes" may have been cached; get the actual settings again if needed
-@@ -5328,9 +5494,9 @@
- WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
- fi
- NCBI_RPATHIFY_OUTPUT(WXWIDGETS_LIBS, [$wxconf $wxcfflags --libs $wxlibs],
-- [$libsed; ])
-+ [$libsed; s/ -lm / /g;])
- WXWIDGETS_STATIC_LIBS=`"$wxconf" $wxcfflags --libs --static $wxlibs \
-- 2>/dev/null | sed -e "$basesed"`
-+ 2>/dev/null | sed -e "$basesed; s/ -lm / /g;"`
- if test -n "$WXWIDGETS_STATIC_LIBS"; then
- # Allow direct use of underlying libraries with strict linkers
- WXWIDGETS_LIBS="$WXWIDGETS_LIBS `echo $WXWIDGETS_STATIC_LIBS | sed -e 's/.*\.a *//'`"
-@@ -5350,7 +5516,7 @@
- ## In-house Fast-CGI library
- if test "$with_fastcgi" != "no" ; then
- case "$with_fastcgi" in
-- yes | "" ) : ${FASTCGI_PATH:="$NCBI/fcgi-current"} ;;
-+ yes | "" ) ;;
- */* ) FASTCGI_PATH=$with_fastcgi ;;
- * ) FASTCGI_PATH=$NCBI/fcgi-${with_fastcgi} ;;
- esac
-@@ -5366,7 +5532,8 @@
- NCBI_RPATHIFY(FASTCGI_LIBS, $FASTCGI_LIBDIR, [ -lfcgi $NETWORK_LIBS])
- FASTCGI_OBJS="fcgibuf"
- LIBS="$FASTCGI_LIBS $orig_LIBS"
-- AC_CACHE_CHECK([for FastCGI libraries in $FASTCGI_PATH], ncbi_cv_lib_fcgi,
-+ AC_CACHE_CHECK([for FastCGI libraries${FASTCGI_PATH:+ in $FASTCGI_PATH}],
-+ ncbi_cv_lib_fcgi,
- [CPPFLAGS="$FASTCGI_INCLUDE $orig_CPPFLAGS"
- AC_LINK_IFELSE([AC_LANG_PROGRAM(
- [[#include <fcgiapp.h>]],
-@@ -5416,7 +5583,11 @@
- else
- with_included_sss=no
- fi
-+ if test "${with_sss-yes}" = yes; then
- NCBI_SSS_PATH=${NCBI_SSS_PATH:="$NCBI/sss/BUILD"}
-+ else
-+ NCBI_SSS_PATH=$with_sss
-+ fi
- NCBI_SSS_INCLUDE=${NCBI_SSS_INCLUDE:="$NCBI_SSS_PATH/include"}
- if test -z "$NCBI_SSS_LIBPATH" ; then
- NCBI_SSS_LIBPATH="${NCBI_SSS_PATH}/lib/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"
-@@ -5424,7 +5595,8 @@
- NCBI_SSS_LIBPATH="${NCBI_SSS_LIBPATH}mt"
- fi
- fi
-- AC_MSG_CHECKING([for NCBI SSS directories in $NCBI_SSS_PATH])
-+ AC_MSG_CHECKING(
-+ [for NCBI SSS directories${NCBI_SSS_PATH:+ in $NCBI_SSS_PATH}])
- if test "$with_included_sss" = "yes"; then
- AC_MSG_RESULT([yes]) # duh
- elif test ! -d "${NCBI_SSS_LIBPATH}" -o ! -d "${NCBI_SSS_INCLUDE}" ; then
-@@ -5510,7 +5682,6 @@
-
- # SP
- if test "$with_sp" != "no" ; then
-- SP_PATH=${SP_PATH:="$NCBI/SP"}
- if test -n "$SP_INCLUDE"; then
- SP_GENERIC="$SP_INCLUDE/../generic"
- else
-@@ -5520,7 +5691,7 @@
- if test -z "$SP_LIBPATH" ; then
- SP_LIBPATH="${SP_PATH}/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
- fi
-- AC_MSG_CHECKING([for SP directories in $SP_PATH])
-+ AC_MSG_CHECKING([for SP directories${SP_PATH:+ in $SP_PATH}])
- if test ! -d "${SP_LIBPATH}" -o ! -d "${SP_INCLUDE}" ; then
- AC_MSG_RESULT([no])
- NCBI_MISSING_PACKAGE(sp)
-@@ -5558,19 +5729,13 @@
-
-
- ## ORBacus CORBA
--if test "${with_orbacus:-yes}" = yes; then
-- if test -d $NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT; then
-- : ${ORBACUS_PATH=$NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT}
-- else
-- : ${ORBACUS_PATH=$NCBI/corba/OB-4.0.1}
-- fi
--elif test "$with_orbacus" != no; then
-+if test "$with_orbacus" != no; then
-+ if test "$with_orbacus" != yes; then
- ORBACUS_PATH=$with_orbacus
- fi
- if test -d "$ORBACUS_PATH"; then
- NCBI_FIX_DIR(ORBACUS_PATH)
- fi
--if test "$with_orbacus" != no; then
- fullpath=${ORBACUS_PATH}/${DEBUG_SFX}${mt_sfx}${bit64_sfx}
- if test -f ${fullpath}/inc/OB/Config.h ; then
- : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include -I$fullpath/inc"}
-@@ -5594,7 +5759,8 @@
- LIBIMR=
- ;;
- esac
-- AC_CACHE_CHECK([for ORBacus in $ORBACUS_PATH], ncbi_cv_lib_orbacus,
-+ AC_CACHE_CHECK([for ORBacus${ORBACUS_PATH:+ in $ORBACUS_PATH}],
-+ ncbi_cv_lib_orbacus,
- [CPPFLAGS="$ORBACUS_INCLUDE $orig_CPPFLAGS"
- LIBS="$ORBACUS_LIBPATH $LIBOB $NETWORK_LIBS $DL_LIBS $orig_LIBS"
- AC_LINK_IFELSE([AC_LANG_PROGRAM(
-@@ -5633,7 +5799,7 @@
-
- if test "$with_icu" != "no" ; then
- case "$with_icu" in
-- yes | "" ) : ${ICU_PATH=$NCBI/icu} ;;
-+ yes | "" ) ;;
- * ) ICU_PATH=$with_icu ;;
- esac
- if test -d "$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
-@@ -5648,7 +5814,8 @@
- ICU_BINPATH=${ICU_BINPATH:="$ICU_ARCH_PATH/bin"}
- ICU_LIBPATH=${ICU_LIBPATH:="$ICU_ARCH_PATH/lib"}
- ICU_INCLUDE=
-- AC_CACHE_CHECK([for ICU in $ICU_ARCH_PATH], ncbi_cv_lib_icu,
-+ AC_CACHE_CHECK([for ICU${ICU_ARCH_PATH:+ in $ICU_ARCH_PATH}],
-+ ncbi_cv_lib_icu,
- [ICU_CONFIG=`$ICU_BINPATH/icu-config --bindir 2>/dev/null`/icu-config
- if test -x "$ICU_CONFIG" ; then
- ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
-@@ -5690,9 +5857,6 @@
-
-
- ### XML/XSL libraries
--if test -d "$NCBI/expat/include"; then
-- : ${EXPAT_PATH=$NCBI/expat}
--fi
- NCBI_CHECK_THIRD_PARTY_LIB(expat,
- AC_LANG_PROGRAM([#include <expat.h>],
- [XML_Parser parser = XML_ParserCreate("utf-8");]))
-@@ -5701,7 +5865,6 @@
- else
- EXPAT_STATIC_LIBS=${EXPAT_LIBS}
- fi
--: ${SABLOT_PATH=$NCBI/Sablot}
- vpath="$SABLOT_PATH/${compiler_vpfx}build"
- test -d "$vpath" && SABLOT_PATH=$vpath
- if test -d "$SABLOT_PATH"; then
-@@ -5718,7 +5881,6 @@
- SABLOT_STATIC_LIBS=${SABLOT_LIBS}
- fi
-
--: ${LIBXML_PATH=$NCBI/libxml}
- # test -d "$LIBXML_PATH" || LIBXML_PATH=`xml2-config --prefix 2>/dev/null`
- if test "$with_libxml" != "no"; then
- case "$with_libxml" in
-@@ -5813,7 +5975,6 @@
- LIBEXSLT_STATIC_LIBS=${LIBEXSLT_LIBS}
- fi
-
--: ${XERCES_PATH=$NCBI/xerces}
- if test "$with_xerces" != no; then
- if test "${with_xerces-yes}" != yes; then
- XERCES_PATH=$with_xerces
-@@ -5838,7 +5999,7 @@
- NCBI_FIX_DIR(XERCES_LIBPATH)
- fi
- fi
-- if test -d $XERCES_PATH; then
-+ if test -d "$XERCES_PATH"; then
- in_path=" in $XERCES_PATH"
- : ${XERCES_INCLUDE=-I$XERCES_PATH/include}
- : ${XERCES_LIBPATH=$XERCES_PATH/lib}
-@@ -5875,7 +6036,6 @@
- XERCES_STATIC_LIBS=
- fi
-
--: ${XALAN_PATH=$NCBI/xalan}
- if test "$with_xalan" != no; then
- if test "${with_xalan-yes}" != yes; then
- XALAN_PATH=$with_xalan
-@@ -5900,7 +6060,7 @@
- NCBI_FIX_DIR(XALAN_LIBPATH)
- fi
- fi
-- if test -d $XALAN_PATH; then
-+ if test -d "$XALAN_PATH"; then
- in_path=" in $XALAN_PATH"
- : ${XALAN_INCLUDE=-I$XALAN_PATH/include}
- : ${XALAN_LIBPATH=$XALAN_PATH/lib}
-@@ -5937,7 +6097,6 @@
-
- test -d SunWS_cache && rm -r SunWS_cache
-
--: ${ZORBA_PATH=$NCBI/zorba}
- if test "$with_zorba" != no; then
- if test "${with_zorba-yes}" != yes; then
- ZORBA_PATH=$with_zorba
-@@ -5967,7 +6126,7 @@
- ZORBA_PATH=`$ZORBA_CONFIG --prefix`
- : ${ZORBA_INCLUDE=`$ZORBA_CONFIG --cppflags`}
- fi
-- if test -d $ZORBA_PATH; then
-+ if test -d "$ZORBA_PATH"; then
- in_path=" in $ZORBA_PATH"
- : ${ZORBA_INCLUDE=-I$ZORBA_PATH/include}
- : ${ZORBA_LIBPATH=$ZORBA_PATH/lib}
-@@ -6010,7 +6169,7 @@
-
- ### SQLite
- case "$with_sqlite3" in
-- yes | '' ) : ${SQLITE3_PATH=$NCBI/sqlite3} ;;
-+ yes | '' ) ;;
- * ) SQLITE3_PATH=$with_sqlite3 ;;
- esac
-
-@@ -6048,7 +6207,6 @@
- ### OEChem
- # somewhat kludgish, as we now wanto to add in oeiupac and oedepict,
- # which depend on oechem....
--: ${OECHEM_PATH=$NCBI/oechem}
- NCBI_CHECK_THIRD_PARTY_LIB(oechem,
- AC_LANG_PROGRAM([#include <oechem.h>],
- [OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive();]),
-@@ -6091,7 +6249,7 @@
-
- ### muParser
- case "$with_muparser" in
-- yes | '' ) : ${MUPARSER_PATH=$NCBI/muParser} ;;
-+ yes | '' ) ;;
- * ) MUPARSER_PATH=$with_muparser ;;
- esac
-
-@@ -6111,7 +6269,7 @@
-
- ### hdf5
- case "$with_hdf5" in
-- yes | '' ) : ${HDF5_PATH=$NCBI/hdf5} ;;
-+ yes | '' ) ;;
- * ) HDF5_PATH=$with_hdf5 ;;
- esac
-
-@@ -6176,7 +6334,7 @@
- GIF_LIBS=$UNGIF_LIBS
- fi
-
--test -n "$x_libraries" && : ${XPM_PATH=`dirname "$x_libraries"`}
-+case "$x_libraries" in */*) : ${XPM_PATH=`dirname "$x_libraries"`} ;; esac
- NCBI_CHECK_THIRD_PARTY_LIB(Xpm,
- AC_LANG_PROGRAM([#include <X11/xpm.h>],
- [XpmImage image; XpmInfo info;
-@@ -6241,7 +6399,7 @@
- fi
-
- case "$with_ftgl" in
-- yes | '' ) : ${FTGL_PATH=$NCBI/ftgl} ;;
-+ yes | '' ) ;;
- * ) FTGL_PATH=$with_ftgl ;;
- esac
-
-@@ -6268,7 +6426,7 @@
-
- # Mimetic
- case "$with_mimetic" in
-- yes | '' ) : ${MIMETIC_PATH=$NCBI/mimetic} ;;
-+ yes | '' ) ;;
- * ) MIMETIC_PATH=$with_mimetic ;;
- esac
- if test -d "$MIMETIC_PATH"; then
-@@ -6293,6 +6451,88 @@
- [mimetic::MimeEntity me;])])
-
-
-+# gSOAP++
-+case "$with_gsoap" in
-+ yes | '' ) ;;
-+ * ) GSOAP_PATH=$with_gsoap ;;
-+esac
-+if test -d "$GSOAP_PATH"; then
-+ NCBI_FIX_DIR(GSOAP_PATH)
-+fi
-+for d in "$GSOAP_LIBDIR" \
-+ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-+ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-+ "$GSOAP_PATH/lib${bit64_sfx}" \
-+ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}/lib" \
-+ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}/lib" \
-+ "$GSOAP_PATH/lib"; do
-+ if test -d "$d"; then
-+ GSOAP_LIBDIR=$d
-+ NCBI_FIX_DIR(GSOAP_LIBDIR)
-+ break
-+ fi
-+done
-+NCBI_RPATHIFY(GSOAP_LIBPATH, $GSOAP_LIBDIR)
-+
-+: ${GSOAP_BINDIR=`dirname "$GSOAP_LIBDIR"`/bin}
-+AC_PATH_PROG(GSOAP_SOAPCPP2, soapcpp2, [], $GSOAP_BINDIR:$PATH)
-+AC_PATH_PROG(GSOAP_WSDL2H, wsdl2h, [], $GSOAP_BINDIR:$PATH)
-+
-+NCBI_CHECK_THIRD_PARTY_LIB_EX(gsoap, GSOAP, gsoapssl++,
-+ [AC_LANG_PROGRAM([#include <stdsoap2.h>
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultcode(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultsubcode(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultstring(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultdetail(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultsubcode(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultdetail(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 void SOAP_FMAC4 soap_serializeheader(struct soap*) { }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_putheader(struct soap*) { return 0; }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_getheader(struct soap*) { return 0; }
-+ SOAP_FMAC3 void SOAP_FMAC4 soap_serializefault(struct soap*) { }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_putfault(struct soap*) { return 0; }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_getfault(struct soap*) { return 0; }],
-+ [soap s;])],
-+ $OPENSSL_LIBS $Z_LIBS)
-+
-+case "$with_sqlite3" in
-+ yes | '' ) ;;
-+ * ) SQLITE3_PATH=$with_sqlite3 ;;
-+esac
-+
-+
-+# MongoDB
-+if test -d "$MONGODB_PATH"; then
-+ NCBI_FIX_DIR(MONGODB_PATH)
-+fi
-+if test -d $MONGODB_PATH/lib${bit64_sfx}; then
-+ MONGODB_LIBDIR=$MONGODB_PATH/lib${bit64_sfx}
-+else
-+ MONGODB_LIBDIR=$MONGODB_PATH/lib
-+fi
-+# need Boost rpath
-+NCBI_RPATHIFY(MONGODB_LIBPATH, $MONGODB_LIBDIR)
-+NCBI_CHECK_THIRD_PARTY_LIB_EX(mongodb, MONGODB, mongoclient,
-+ [AC_LANG_PROGRAM([#include <mongo/client/dbclient.h>],
-+ [std::vector<mongo::HostAndPort> v;
-+ mongo::DBClientReplicaSet client("foo", v);
-+ client.connect();])],
-+ [$BOOST_LIBPATH $boost_fs_lib $BOOST_THREAD_LIBS], [],
-+ [$BOOST_INCLUDE])
-+# MongoDB's own library is normally static, but its supporting Boost
-+# libraries might not be by default.
-+if test -n "$MONGODB_LIBS"; then
-+ MONGODB_STATIC_LIBS="$MONGODB_LIBPATH -lmongodb $BOOST_LIBPATH $boost_fs_static_lib $BOOST_THREAD_STATIC_LIBS"
-+else
-+ MONGODB_STATIC_LIBS=
-+fi
-+
- ### Restore original compiler/linker flags
- LIBS="$orig_LIBS"
- CPPFLAGS="$orig_CPPFLAGS"
-@@ -6499,16 +6739,6 @@
- fi
-
-
--## Sequence Read Archive SDK, which may be attached on either the
--## public or the internal side
--
--if test -f "${real_srcdir}/src/sra/sdk/Makefile.sra_macros.mk"; then
-- sra=sra
--else
-- sra=
--fi
--
--
- ## `internal' project cluster
-
- if test "$with_internal" = "no" \
-@@ -6781,6 +7011,7 @@
- AC_SUBST(C_LINK)
- AC_SUBST(TAIL_N)
- AC_SUBST(EGREP_Q)
-+AC_SUBST(LDD_R)
-
- AC_SUBST(CFLAGS)
- AC_SUBST(FAST_CFLAGS)
-@@ -6829,7 +7060,6 @@
- AC_SUBST(algo)
- AC_SUBST(app)
- AC_SUBST(internal)
--AC_SUBST(sra)
-
- AC_SUBST(check)
- AC_SUBST(CHECK_ARG)
-@@ -6865,6 +7095,7 @@
-
- AC_SUBST(THREAD_LIBS)
- AC_SUBST(NCBIATOMIC_LIB)
-+AC_SUBST(OPENMP_FLAGS)
- AC_SUBST(NETWORK_LIBS)
- AC_SUBST(NETWORK_PURE_LIBS)
- AC_SUBST(RESOLVER_LIBS)
-@@ -6902,6 +7133,8 @@
- AC_SUBST(BOOST_INCLUDE)
- AC_SUBST(BOOST_LIBPATH)
- AC_SUBST(BOOST_TAG)
-+AC_SUBST(BOOST_FILESYSTEM_LIBS)
-+AC_SUBST(BOOST_FILESYSTEM_STATIC_LIBS)
- AC_SUBST(BOOST_REGEX_LIBS)
- AC_SUBST(BOOST_REGEX_STATIC_LIBS)
- AC_SUBST(BOOST_SYSTEM_LIBS)
-@@ -6968,6 +7201,8 @@
- AC_SUBST(SQLITE3_STATIC_LIBS)
- AC_SUBST(FREETYPE_INCLUDE)
- AC_SUBST(FREETYPE_LIBS)
-+AC_SUBST(GSOAP_PATH)
-+AC_SUBST(MONGODB_STATIC_LIBS)
- AC_SUBST(ncbi_xreader_pubseqos)
- AC_SUBST(ncbi_xreader_pubseqos2)
- AC_SUBST(UNLESS_PUBSEQOS)
-@@ -7194,7 +7429,9 @@
-
- cat << EOCONF
- ===============================================================================
--NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running
-+NCBI C++ Toolkit documentation:
-+ Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
-+ Local: ./doc/public/index.html
- For the available configuration flags run: ./configure --help
-
- CFLAGS = $CFLAGS
---- ncbi_cxx--12_0_0/src/build-system/aclocal.m4.ori 2014-06-23 17:36:18.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/aclocal.m4 2014-06-23 17:36:59.000000000 +0200
-@@ -1,126 +1,45 @@
+--- ncbi_cxx--12_0_0/src/build-system/aclocal.m4.ori 2014/05/05 12:38:59 62744
++++ ncbi_cxx--12_0_0/src/build-system/aclocal.m4 2014/05/05 13:59:33 62745
+@@ -1,126 +1,44 @@
-# Hacked up in various ways, since Autoconf's version doesn't quite
-# suit our (unusual) conventions. (Originally from status.m4)
-m4_define([_AC_SRCPATHS],
@@ -1380,13 +49,11 @@
-AS_SET_CATFILE([ac_abs_builddir], [$builddir], [$1])
-AS_SET_CATFILE([ac_abs_top_builddir],
- [$ac_abs_builddir], [${ac_top_builddir}.])
- AS_SET_CATFILE([ac_abs_top_srcdir], [$ac_dir_in], [$real_srcdir])
+-AS_SET_CATFILE([ac_abs_top_srcdir], [$ac_dir_in], [$real_srcdir])
-AS_SET_CATFILE([ac_abs_srcdir], [$ac_abs_top_srcdir], [$ac_dir_suffix])
-])# _AC_SRCPATHS
-
-+ac_builddir=$builddir
-+])
-
+-
-# Copied from autoconf 2.59 (m4sh.m4), but rearranged to make bash a
-# last resort due to issues with sourcing .bashrc.
-m4_define([_AS_LINENO_PREPARE],
@@ -1426,7 +93,7 @@
- esac
- done]);;
- esac
-
+-
- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
- # uniformly replaced by the line number. The first 'sed' inserts a
- # line-number line before each line; the second 'sed' does the real
@@ -1456,6 +123,10 @@
- exit
-}
-])# _AS_LINENO_PREPARE
++ac_builddir=$builddir
++])
++
++
+# _AS_DETECT_BETTER_SHELL and its helper _AS_RUN (from m4sh.m4; both
+# historically part of _AS_LINENO_PREPARE) also need tweaking, to make
+# bash a last resort due to issues with sourcing .bashrc while entirely
@@ -1485,7 +156,7 @@
AC_DEFUN(NCBI_FIX_DIR,
-@@ -158,7 +77,7 @@
+@@ -158,7 +76,7 @@
AC_MSG_WARN([Proceeding without questions per --without-caution]) ;;
* )
echo "$1 [[y/N]]"
@@ -1494,59 +165,69 @@
case "$answer" in
[[Yy]]* ) AC_MSG_WARN([Proceeding at your own risk...]) ;;
* ) AC_MSG_ERROR([Configuration has been canceled by user.]) ;;
---- ncbi_cxx--12_0_0/src/build-system/config.h.in.ori 2014-06-23 17:38:56.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/config.h.in 2014-06-23 17:39:04.000000000 +0200
-@@ -98,6 +98,9 @@
- /* Define to 1 if you have the `getaddrinfo' function. */
- #undef HAVE_GETADDRINFO
+--- ncbi_cxx--12_0_0/src/build-system/configure.ac.ori 2014/05/05 12:38:59 62744
++++ ncbi_cxx--12_0_0/src/build-system/configure.ac 2014/05/05 13:59:33 62745
+@@ -38,7 +38,7 @@
+ #
+ #############################################################################
-+/* Define to 1 if you have the `getgrouplist' function. */
-+#undef HAVE_GETGROUPLIST
-+
- /* If you have the `gethostbyaddr_r' function, define to the number of
- arguments it takes (normally 7 or 8). */
- #undef HAVE_GETHOSTBYADDR_R
-@@ -176,9 +179,6 @@
- /* Define to 1 if you have `ios(_base)::register_callback'. */
- #undef HAVE_IOS_REGISTER_CALLBACK
+-AC_PREREQ(2.59)
++AC_PREREQ(2.60)
--/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
--#undef HAVE_IS_SORTED
--
- /* Define to 1 if you have the `lchown' function. */
- #undef HAVE_LCHOWN
+ dnl Early setup, most crucially for locking. The diversion magic lets
+ dnl this occur before AC_INIT, which already interferes with other
+@@ -493,6 +493,10 @@
+ [***** See also HTML documentation in ./doc/index.html *****])
-@@ -234,6 +234,9 @@
- /* Define to 1 if libgnutls is available. */
- #undef HAVE_LIBGNUTLS
-+/* Define to 1 if libgsoapssl++ is available. */
-+#undef HAVE_LIBGSOAP
-+
- /* Define to 1 if libhdf5_cpp is available. */
- #undef HAVE_LIBHDF5
++AC_DIVERT_PUSH(PARSE_ARGS)
++dnl As of Autoconf 2.60, this needs to run too early for config.log,
++dnl to which AC_MSG_ERROR normally copies its output, to be available.
++m4_rename([AS_MESSAGE_LOG_FD], [NCBI_ORIG_ASMLFD])
+ #### Check the passed arguments against the list of available ones
+ x_with_list="\
+ debug max-debug symbols optimization profiling tcheck dll static static-exe \
+@@ -564,7 +568,7 @@
+ | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
+ | --x-includes=* | --x-libraries=* | --with-3psw=* \
+ | --target=* | --with-runpath=* | --with-relative-runpath=* \
+- | --no-create | --no-recursion)
++ | --help | --no-create | --no-recursion)
+ ;;
-@@ -260,6 +263,9 @@
- /* Define to 1 if libmimetic is available. */
- #undef HAVE_LIBMIMETIC
+ * )
+@@ -572,6 +576,8 @@
+ ;;
+ esac
+ done
++m4_rename([NCBI_ORIG_ASMLFD], [AS_MESSAGE_LOG_FD])
++AC_DIVERT_POP
-+/* Define to 1 if libmongoclient is available. */
-+#undef HAVE_LIBMONGODB
-+
- /* Define to 1 if libmuparser is available. */
- #undef HAVE_LIBMUPARSER
-@@ -382,9 +388,6 @@
- /* Define to 1 if `min'/`max' templates are not implemented. */
- #undef HAVE_NO_MINMAX_TEMPLATE
+ if test "$with_gbench" = "yes" ; then
+@@ -2176,7 +2182,7 @@
+ fi
+
+ AC_PATH_PROG(TOUCH, touch, [], /bin:/usr/bin:$PATH)
+-AC_PATH_PROG(GREP, grep)
++dnl AC_PATH_PROG(GREP, grep)
+ AC_PROG_EGREP
+ AC_MSG_CHECKING([how to run $EGREP quietly])
+ if test -z "`echo foo | $EGREP -q fo+ 2>>config.log || echo $?`"; then
+--- ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h.ori 2014/05/05 14:10:55 62749
++++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h 2014/05/05 14:23:49 62750
+@@ -694,7 +694,7 @@
+ /* Define to empty if `const' does not conform to ANSI C. */
+ /* #undef const */
--/* Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword. */
--#undef HAVE_NULLPTR
--
- /* Define to 1 if ODBC libraries are available. */
- #undef HAVE_ODBC
+-/* Define to `unsigned' if <sys/types.h> does not define. */
++/* Define to `unsigned int' if <sys/types.h> does not define. */
+ /* #undef size_t */
-@@ -799,37 +802,37 @@
+ /*
+--- ncbi_cxx--12_0_0/src/build-system/config.h.in.ori 2014/05/05 14:10:55 62749
++++ ncbi_cxx--12_0_0/src/build-system/config.h.in 2014/05/05 14:23:49 62750
+@@ -802,37 +802,37 @@
by a signal. */
#undef SELECT_UPDATES_TIMEOUT
@@ -1595,66 +276,21 @@
#undef SIZEOF___INT64
/* Define to 1 if the stack grows down. */
-@@ -870,5 +873,5 @@
+@@ -873,5 +873,5 @@
/* Define to empty if `const' does not conform to ANSI C. */
#undef const
-/* Define to `unsigned' if <sys/types.h> does not define. */
+/* Define to `unsigned int' if <sys/types.h> does not define. */
#undef size_t
---- ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h.ori 2014-06-23 17:40:40.000000000 +0200
-+++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h 2014-06-23 17:40:57.000000000 +0200
-@@ -1,4 +1,4 @@
--/* $Id: ncbiconf_xcode.h 361821 2012-05-04 14:28:13Z ucko $
-+/* $Id$
- * By Vlad Lebedev, NCBI (lebedev@ncbi.nlm.nih.gov)
- *
- * Mac OS X - xCode Build
-@@ -258,9 +258,6 @@
- /* Define to 1 if you have `ios(_base)::register_callback'. */
- #define HAVE_IOS_REGISTER_CALLBACK 1
-
--/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
--/* #undef HAVE_IS_SORTED */
--
- /* Define to 1 if you have the `lchown' function. */
- /* #undef HAVE_LCHOWN */
-
-@@ -358,6 +355,9 @@
- /* Define to 1 if you have the `lutimes' function. */
- /* #undef HAVE_LUTIMES */
-
-+/* Define to 1 if you have the `madvise' function. */
-+#define HAVE_MADVISE 1
-+
- /* Define to 1 if you have the <malloc.h> header file. */
- /* #undef HAVE_MALLOC_H */
-
-@@ -589,15 +589,15 @@
- /* Define to 1 if you have the <windows.h> header file. */
- /* #undef HAVE_WINDOWS_H */
-
-+/* Define to 1 if you have the `writev' function. */
-+#define HAVE_WRITEV 1
-+
- /* Define to 1 if the system has the type `wstring'. */
- #define HAVE_WSTRING 1
-
- /* Define to 1 if wxWidgets is available. */
- /* #undef HAVE_WXWIDGETS */
+--- ncbi_cxx--12_0_0/src/build-system/aclocal.m4.ori 2014/05/06 13:12:18 62759
++++ ncbi_cxx--12_0_0/src/build-system/aclocal.m4 2014/05/06 13:42:48 62760
+@@ -11,6 +11,7 @@
--/* Define to 1 if nullptr keyword is available. */
--/* #undef HAVE_NULLPTR */
--
- /* Define as const if the declaration of iconv() needs const. */
- #if MAC_OS_X_VERSION_MIN_REQUIRED >= 1050 /* MAC_OS_X_VERSION_10_5 */
- # define ICONV_CONST
-@@ -694,7 +694,7 @@
- /* Define to empty if `const' does not conform to ANSI C. */
- /* #undef const */
+ NCBI_ORIG__AC_SRCDIRS(["$ac_dir_in"])
--/* Define to `unsigned' if <sys/types.h> does not define. */
-+/* Define to `unsigned int' if <sys/types.h> does not define. */
- /* #undef size_t */
++AS_SET_CATFILE([ac_abs_top_srcdir], [$ac_dir_in], [$real_srcdir])
+ ac_builddir=$builddir
+ ])
- /*
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch.bad
similarity index 100%
copy from sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
copy to sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch.bad
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 2a77c11..ecb94f0 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -112,9 +112,12 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-creaders-linking.patch
"${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
"${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
- "${FILESDIR}"/${P}-support-autoconf-2.60.patch
- "${FILESDIR}"/${P}-configure.patch
+ "${FILESDIR}"/${P}-more-patches.patch
+ "${FILESDIR}"/${P}-linking.patch
+ "${FILESDIR}"/${P}-linking2.patch
)
+ # "${FILESDIR}"/${P}-support-autoconf-2.60.patch
+ # "${FILESDIR}"/${P}-configure.patch
epatch ${PATCHES[@]}
# make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60
# https://bugs.gentoo.org/show_bug.cgi?id=514706
@@ -248,7 +251,8 @@ src_configure() {
$(use_with xerces xerces "${EPREFIX}/usr")
$(use_with hdf5 hdf5 "${EPREFIX}/usr")
$(use_with xalan xalan "${EPREFIX}/usr")
-# $(use_with gif gif "${EPREFIX}/usr")
+# $(use_with gif gif "${EPREFIX}/usr") # prevent compilation failure in "ncbi-tools++-12.0.0/src/util/image/image_io_gif.cpp:351: error: 'QuantizeBuffer' was not declared in this scope"
+ --without-gif
$(use_with jpeg jpeg "${EPREFIX}/usr")
$(use_with tiff tiff "${EPREFIX}/usr")
$(use_with png png "${EPREFIX}/usr")
@@ -263,7 +267,7 @@ src_configure() {
# TODO
# copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
- # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9
+ # otherwise your -O2 will be dropped in some subdirectories and replaced by e.g. -O9
einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
@@ -274,6 +278,7 @@ src_configure() {
--srcdir="${S}" \
--prefix="${EPREFIX}/usr" \
--libdir=/usr/lib64 \
+ --with-flat-makefile \
${myconf[@]} || die
#--without-debug \
# --with-bin-release \
@@ -291,12 +296,33 @@ src_configure() {
}
src_compile() {
- # all_r would ignore the --with-projects contents and build more
- # emake all_r -C GCC*-Release*/build || die
- # all_p with compile only selected/required components
-# cd "${S}"_build &&\
- emake all_p -C "${S}"_build/build
-# emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
+ ## all_r would ignore the --with-projects contents and build more
+ ## emake all_r -C GCC*-Release*/build || die
+ ## all_p with compile only selected/required components
+ ##cd "${S}"_build &&\
+ ##emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
+ #emake all_p -C "${S}"_build/build
+
+ #
+ # Re: /usr/lib64/ncbi-tools++/libdbapi_driver.so: undefined reference to `ncbi::NcbiGetlineEOL(std::istream&, std::string&)'
+ #
+ # The next release should automatically address such underlinking, albeit
+ # only in --with-flat-makefile configurations. For now (12.0.0), you'll need to
+ # add or extend more DLL_LIB settings, to which end you may find the
+ # resources at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/
+ # helpful. For instance,
+ #
+ # http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/dbapi_driver.html
+ #
+ # indicates that src/dbapi/driver/Makefile.dbapi_driver.lib should set
+ #
+ # DLL_LIB = xncbi
+ #
+ # (You can find the path to that makefile by examining
+ # .../status/.dbapi_driver.dep or .../build/Makefile.flat.)
+ #
+ # To take full advantage of --with-flat-makefile, you'll need the following (instead of 'emake all_p -C "${S}"_build/build') and call configure --with-flat-makefile:
+ emake -C "${S}"_build/build -f Makefile.flat
}
src_install() {
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-06-25 20:59 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2014-06-25 20:59 UTC (permalink / raw
To: gentoo-commits
commit: 1aca3e5aae88192ca717e47c5a947ef806b69b2e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 25 20:58:36 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 25 20:58:36 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1aca3e5a
sci-biology/ncbi-tools++-12.0.0: first compile-able ebuild, wow, huge thanks to Aaron Ucko from NCBI developers on the cpp@ mailing list
---
.../files/ncbi-tools++-12.0.0-as-needed.patch | 2 +-
...cbi-tools++-12.0.0-linkage-tuneups-addons.patch | 13 +
.../ncbi-tools++-12.0.0-linkage-tuneups.patch | 421 +++++++++++++++++++++
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 14 +-
4 files changed, 444 insertions(+), 6 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
index e97c77f..a9d166e 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
@@ -344,7 +344,7 @@ index 872b92e..78261eb 100644
CXXFLAGS = $(FAST_CXXFLAGS)
LDFLAGS = $(FAST_LDFLAGS)
+
-+DLL_LIB = xutil omssa pepXML xcompress xconnect seqdb xblast xregexp
++DLL_LIB = xutil omssa pepXML xcompress xconnect seqdb blast xregexp
diff --git a/src/algo/phy_tree/Makefile.xalgophytree.lib b/src/algo/phy_tree/Makefile.xalgophytree.lib
index c7e2778..51ebe9d 100644
--- a/src/algo/phy_tree/Makefile.xalgophytree.lib
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups-addons.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups-addons.patch
new file mode 100644
index 0000000..553e41d
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups-addons.patch
@@ -0,0 +1,13 @@
+--- ncbi_cxx--12_0_0/src/app/agpconvert/Makefile.agpconvert.app.ori (revision 439078)
++++ ncbi_cxx--12_0_0/src/app/agpconvert/Makefile.agpconvert.app (working copy)
+@@ -7,8 +7,8 @@
+ SRC = agpconvert
+
+ LIB = xalgoseq xobjedit $(OBJREAD_LIBS) taxon1 xalnmgr xobjutil submit \
+- ncbi_xdbapi_ftds $(FTDS_LIB) tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+-LIBS = $(FTDS_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++ tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
++LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups.patch
new file mode 100644
index 0000000..86e96b8
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups.patch
@@ -0,0 +1,421 @@
+Index: src/algo/blast/format/Makefile.xblastformat.lib
+===================================================================
+--- src/algo/blast/format/Makefile.xblastformat.lib (revision 439078)
++++ src/algo/blast/format/Makefile.xblastformat.lib (working copy)
+@@ -7,6 +7,6 @@
+
+ CPPFLAGS = -DNCBI_MODULE=BLASTFORMAT $(ORIG_CPPFLAGS)
+
+-DLL_LIB = align_format blastxml xhtml xcgi
++DLL_LIB = align_format xblast xnetblast blastxml xhtml xcgi
+
+ WATCHERS = jianye zaretska madden camacho fongah2
+Index: src/app/compart/Makefile.compart.app
+===================================================================
+--- src/app/compart/Makefile.compart.app (revision 439078)
++++ src/app/compart/Makefile.compart.app (working copy)
+@@ -5,11 +5,11 @@
+ APP = compart
+ SRC = compart
+
+-LIB = xalgoalignutil xalgoalignsplign xalgoalignnw xqueryparse xalnmgr \
+- $(BLAST_LIBS:%=%$(STATIC)) \
+- $(OBJMGR_LIBS:%=%$(STATIC))
++LIB = xalgoalignutil xalgoalignsplign xalgoalignnw xalgoseq \
++ taxon1 xalnmgr xqueryparse xregexp $(PCRE_LIB) \
++ $(BLAST_LIBS:%=%$(STATIC)) $(OBJMGR_LIBS:%=%$(STATIC))
+
+-LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIBS = $(PCRE_LIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+Index: src/app/compart/Makefile.compartp.app
+===================================================================
+--- src/app/compart/Makefile.compartp.app (revision 439078)
++++ src/app/compart/Makefile.compartp.app (working copy)
+@@ -5,7 +5,8 @@
+ APP = compartp
+ SRC = compartp
+
+-LIB = prosplign xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
++LIB = prosplign xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) \
++ xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+
+ LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+Index: src/app/grid/util/Makefile.ncfetch.app
+===================================================================
+--- src/app/grid/util/Makefile.ncfetch.app (revision 439078)
++++ src/app/grid/util/Makefile.ncfetch.app (working copy)
+@@ -5,7 +5,7 @@
+ APP = ncfetch.cgi
+ SRC = ncfetch
+
+-LIB = xcgi xconnserv xconnect xutil xncbi
++LIB = xcgi xconnserv xthrserv xconnect xutil xncbi
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = kazimird
+Index: src/app/hfilter/Makefile.hfilter.app
+===================================================================
+--- src/app/hfilter/Makefile.hfilter.app (revision 439078)
++++ src/app/hfilter/Makefile.hfilter.app (working copy)
+@@ -5,9 +5,10 @@
+ APP = hfilter
+ SRC = hitfilter_app
+
+-LIB = xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
++LIB = xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) xqueryparse \
++ xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+
+-LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIBS = $(PCRE_LIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+Index: src/app/speedtest/Makefile.speedtest.app
+===================================================================
+--- src/app/speedtest/Makefile.speedtest.app (revision 439078)
++++ src/app/speedtest/Makefile.speedtest.app (working copy)
+@@ -8,7 +8,7 @@
+
+ APP = speedtest
+ SRC = speedtest
+-LIB = prosplign xalgoalignutil xcleanup submit $(BLAST_LIBS) \
++LIB = prosplign xalgoalignutil xalgoseq xcleanup taxon1 submit $(BLAST_LIBS) \
+ xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS:%=%$(STATIC))
+
+ LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+Index: src/app/splign/Makefile.splign.app
+===================================================================
+--- src/app/splign/Makefile.splign.app (revision 439078)
++++ src/app/splign/Makefile.splign.app (working copy)
+@@ -12,7 +12,7 @@
+ LIB = xalgoalignsplign xalgoalignutil xalgoalignnw \
+ $(BLAST_DB_DATA_LOADER_LIBS) \
+ ncbi_xloader_lds2 lds2 sqlitewrapp \
+- xqueryparse xalgoseq $(PCRE_LIB) \
++ xqueryparse xalgoseq taxon1 xregexp $(PCRE_LIB) \
+ $(BLAST_LIBS:%=%$(STATIC)) submit \
+ $(OBJMGR_LIBS:%=%$(STATIC))
+
+Index: src/connect/services/test/Makefile.test_nsstorage.app
+===================================================================
+--- src/connect/services/test/Makefile.test_nsstorage.app (revision 439078)
++++ src/connect/services/test/Makefile.test_nsstorage.app (working copy)
+@@ -2,7 +2,7 @@
+
+ APP = test_nsstorage
+ SRC = test_nsstorage
+-LIB = xconnserv xconnect xutil xncbi
++LIB = xconnserv xthrserv xconnect xutil xncbi
+
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+Index: src/misc/hgvs/test/Makefile.hgvs2variation.app
+===================================================================
+--- src/misc/hgvs/test/Makefile.hgvs2variation.app (revision 439078)
++++ src/misc/hgvs/test/Makefile.hgvs2variation.app (working copy)
+@@ -6,7 +6,7 @@
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
+
+-LIB_ = hgvs variation \
++LIB_ = hgvs objcoords variation \
+ entrez2cli entrez2 xregexp $(PCRE_LIB) xobjutil $(OBJMGR_LIBS)
+ LIB = $(LIB_:%=%$(STATIC))
+
+Index: src/misc/hgvs/test/Makefile.test_hgvs_parser.app
+===================================================================
+--- src/misc/hgvs/test/Makefile.test_hgvs_parser.app (revision 439078)
++++ src/misc/hgvs/test/Makefile.test_hgvs_parser.app (working copy)
+@@ -5,7 +5,7 @@
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
+
+-LIB_ = hgvs variation test_boost xregexp $(PCRE_LIB) xobjutil \
++LIB_ = hgvs objcoords variation test_boost xregexp $(PCRE_LIB) xobjutil \
+ entrez2cli entrez2 $(OBJMGR_LIBS)
+
+ LIB = $(LIB_:%=%$(STATIC))
+Index: src/objects/biblio/Makefile.biblio.lib
+===================================================================
+--- src/objects/biblio/Makefile.biblio.lib (revision 439078)
++++ src/objects/biblio/Makefile.biblio.lib (working copy)
+@@ -1,2 +1,4 @@
+ LIB = biblio
+ SRC = biblio__ biblio___ citation_base
++
++DLL_LIB = general
+Index: src/objects/blast/Makefile.blast.lib
+===================================================================
+--- src/objects/blast/Makefile.blast.lib (revision 439078)
++++ src/objects/blast/Makefile.blast.lib (working copy)
+@@ -1,4 +1,6 @@
+ LIB = xnetblast
+ SRC = blast__ blast___ names
+
++DLL_LIB = scoremat seqset
++
+ WATCHERS = camacho
+Index: src/objects/blast/Makefile.xnetblastcli.lib
+===================================================================
+--- src/objects/blast/Makefile.xnetblastcli.lib (revision 439078)
++++ src/objects/blast/Makefile.xnetblastcli.lib (working copy)
+@@ -2,3 +2,5 @@
+
+ LIB = xnetblastcli
+ SRC = blastclient blastclient_
++
++DLL_LIB = xnetblast xconnect
+Index: src/objects/blastdb/Makefile.blastdb.lib
+===================================================================
+--- src/objects/blastdb/Makefile.blastdb.lib (revision 439078)
++++ src/objects/blastdb/Makefile.blastdb.lib (working copy)
+@@ -1,2 +1,4 @@
+ LIB = blastdb
+ SRC = blastdb__ blastdb___
++
++DLL_LIB = seq
+Index: src/objects/general/Makefile.general.lib
+===================================================================
+--- src/objects/general/Makefile.general.lib (revision 439078)
++++ src/objects/general/Makefile.general.lib (working copy)
+@@ -1,2 +1,4 @@
+ LIB = general
+ SRC = general__ general___ uoconv
++
++DLL_LIB = xser
+Index: src/objects/medline/Makefile.medline.lib
+===================================================================
+--- src/objects/medline/Makefile.medline.lib (revision 439078)
++++ src/objects/medline/Makefile.medline.lib (working copy)
+@@ -1,2 +1,4 @@
+ LIB = medline
+ SRC = medline__ medline___
++
++DLL_LIB = biblio general
+Index: src/objects/pub/Makefile.pub.lib
+===================================================================
+--- src/objects/pub/Makefile.pub.lib (revision 439078)
++++ src/objects/pub/Makefile.pub.lib (working copy)
+@@ -1,2 +1,4 @@
+ LIB = pub
+ SRC = pub__ pub___
++
++DLL_LIB = medline biblio
+Index: src/objects/scoremat/Makefile.scoremat.lib
+===================================================================
+--- src/objects/scoremat/Makefile.scoremat.lib (revision 439078)
++++ src/objects/scoremat/Makefile.scoremat.lib (working copy)
+@@ -1,2 +1,4 @@
+ LIB = scoremat
+ SRC = scoremat__ scoremat___
++
++DLL_LIB = seqset
+Index: src/objects/seq/Makefile.seq.lib
+===================================================================
+--- src/objects/seq/Makefile.seq.lib (revision 439078)
++++ src/objects/seq/Makefile.seq.lib (working copy)
+@@ -13,3 +13,5 @@
+ seq_loc_from_string seq_loc_reverse_complementer
+
+ WATCHERS = vasilche grichenk
++
++DLL_LIB = seqcode pub biblio general xser sequtil
+Index: src/objects/seqset/Makefile.seqset.lib
+===================================================================
+--- src/objects/seqset/Makefile.seqset.lib (revision 439078)
++++ src/objects/seqset/Makefile.seqset.lib (working copy)
+@@ -1,2 +1,4 @@
+ LIB = seqset
+ SRC = seqset__ seqset___ gb_release_file
++
++DLL_LIB = xser
+Index: src/objects/taxon1/Makefile.taxon1.lib
+===================================================================
+--- src/objects/taxon1/Makefile.taxon1.lib (revision 439078)
++++ src/objects/taxon1/Makefile.taxon1.lib (working copy)
+@@ -3,4 +3,6 @@
+ LIB = taxon1
+ SRC = taxon1__ taxon1___ taxon1 cache utils ctreecont
+
++DLL_LIB = xconnect
++
+ WATCHERS = domrach
+Index: src/objmgr/util/Makefile.util.lib
+===================================================================
+--- src/objmgr/util/Makefile.util.lib (revision 439078)
++++ src/objmgr/util/Makefile.util.lib (working copy)
+@@ -8,5 +8,7 @@
+ SRC = weight sequence feature seqtitle create_defline obj_sniff seq_loc_util seq_align_util
+ LIB = xobjutil
+
++DLL_LIB = xobjmgr
++
+ WATCHERS = ucko vasilche
+
+Index: src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
+===================================================================
+--- src/objtools/blast/seqdb_reader/Makefile.seqdb.lib (revision 439078)
++++ src/objtools/blast/seqdb_reader/Makefile.seqdb.lib (working copy)
+@@ -29,4 +29,6 @@
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++DLL_LIB = xobjmgr blastdb
++
+ WATCHERS = maning camacho
+Index: src/objtools/blast/services/Makefile.blast_services.lib
+===================================================================
+--- src/objtools/blast/services/Makefile.blast_services.lib (revision 439078)
++++ src/objtools/blast/services/Makefile.blast_services.lib (working copy)
+@@ -13,3 +13,4 @@
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+
++DLL_LIB = xnetblastcli xconnect
+Index: src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
+===================================================================
+--- src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib (revision 439078)
++++ src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib (working copy)
+@@ -7,4 +7,6 @@
+
+ ASN_DEP = blastdb seqset
+
++DLL_LIB = seqdb
++
+ WATCHERS = camacho
+Index: src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
+===================================================================
+--- src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib (revision 439078)
++++ src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib (working copy)
+@@ -7,4 +7,6 @@
+
+ ASN_DEP = blastdb xnetblast
+
++DLL_LIB = blast_services
++
+ WATCHERS = camacho
+Index: src/objtools/lds2/Makefile.lds2.lib
+===================================================================
+--- src/objtools/lds2/Makefile.lds2.lib (revision 439078)
++++ src/objtools/lds2/Makefile.lds2.lib (working copy)
+@@ -8,9 +8,9 @@
+ SRC = lds2 lds2_db lds2_handlers
+
+ # Dependencies for shared library
+-#DLL_LIB = sqlitewrapp
++DLL_LIB = sqlitewrapp $(COMPRESS_LIBS)
+
+-LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
++LIBS = $(SQLITE3_LIBS) $(CMPRS_LIBS) $(ORIG_LIBS)
+
+ CPPFLAGS = $(SQLITE3_INCLUDE) $(CMPRS_INCLUDE) $(ORIG_CPPFLAGS)
+
+Index: src/objtools/readers/Makefile.xobjread.lib
+===================================================================
+--- src/objtools/readers/Makefile.xobjread.lib (revision 439078)
++++ src/objtools/readers/Makefile.xobjread.lib (working copy)
+@@ -19,5 +19,6 @@
+ best_feat_finder source_mod_parser fasta_exception
+
+
+-DLL_LIB = creaders
++DLL_LIB = seqset $(SEQ_LIBS) pub general creaders xutil
+
++
+Index: src/sample/app/cgi/Makefile.cgi_session_sample.app
+===================================================================
+--- src/sample/app/cgi/Makefile.cgi_session_sample.app (revision 439078)
++++ src/sample/app/cgi/Makefile.cgi_session_sample.app (working copy)
+@@ -11,7 +11,7 @@
+ # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
+
+ ### BEGIN COPIED SETTINGS
+-LIB = xgridcgi xcgi xhtml xconnserv xconnect xutil xncbi
++LIB = xgridcgi xcgi xhtml xconnserv xthrserv xconnect xutil xncbi
+
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+Index: src/sample/app/netcache/Makefile.netcache_cgi_sample.app
+===================================================================
+--- src/sample/app/netcache/Makefile.netcache_cgi_sample.app (revision 439078)
++++ src/sample/app/netcache/Makefile.netcache_cgi_sample.app (working copy)
+@@ -4,7 +4,7 @@
+ SRC = netcache_cgi_sample
+
+ ### BEGIN COPIED SETTINGS
+-LIB = xconnserv xconnect xcgi xhtml xutil xncbi
++LIB = xconnserv xthrserv xconnect xcgi xhtml xutil xncbi
+
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+ ### END COPIED SETTINGS
+Index: src/serial/Makefile.serial.lib
+===================================================================
+--- src/serial/Makefile.serial.lib (revision 439078)
++++ src/serial/Makefile.serial.lib (working copy)
+@@ -19,3 +19,5 @@
+ LIB = xser
+
+ WATCHERS = gouriano
++
++DLL_LIB = xutil xncbi
+Index: src/sra/data_loaders/bam/test/Makefile.test_bam_loader.app
+===================================================================
+--- src/sra/data_loaders/bam/test/Makefile.test_bam_loader.app (revision 439078)
++++ src/sra/data_loaders/bam/test/Makefile.test_bam_loader.app (working copy)
+@@ -7,7 +7,8 @@
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
+
+-LIB = ncbi_xloader_bam bamread $(BAM_LIBS) xobjreadex xobjutil test_boost $(OBJMGR_LIBS)
++LIB = ncbi_xloader_bam bamread $(BAM_LIBS) \
++ xobjreadex $(OBJREAD_LIBS) xobjutil test_boost $(OBJMGR_LIBS)
+
+ LIBS = $(SRA_SDK_SYSLIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
+
+Index: src/sra/data_loaders/csra/test/Makefile.test_csra_loader.app
+===================================================================
+--- src/sra/data_loaders/csra/test/Makefile.test_csra_loader.app (revision 439078)
++++ src/sra/data_loaders/csra/test/Makefile.test_csra_loader.app (working copy)
+@@ -5,7 +5,8 @@
+
+ CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
+
+-LIB = ncbi_xloader_csra $(SRAREAD_LIBS) xobjreadex xobjutil test_boost $(OBJMGR_LIBS)
++LIB = ncbi_xloader_csra $(SRAREAD_LIBS) xobjreadex $(OBJREAD_LIBS) xobjutil \
++ test_boost $(OBJMGR_LIBS)
+
+ LIBS = $(SRA_SDK_SYSLIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
+
+Index: src/sra/readers/bam/test/Makefile.bam_test.app
+===================================================================
+--- src/sra/readers/bam/test/Makefile.bam_test.app (revision 439078)
++++ src/sra/readers/bam/test/Makefile.bam_test.app (working copy)
+@@ -9,7 +9,8 @@
+ APP = bam_test
+ SRC = bam_test
+
+-LIB = bamread xobjreadex xobjutil xobjsimple $(OBJMGR_LIBS) $(BAM_LIBS)
++LIB = bamread $(BAM_LIBS) xobjreadex $(OBJREAD_LIBS) xobjutil xobjsimple \
++ $(OBJMGR_LIBS)
+ LIBS = $(SRA_SDK_SYSLIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects
+Index: src/sra/sdk/libs/vfs/Makefile.vfs.lib
+===================================================================
+--- src/sra/sdk/libs/vfs/Makefile.vfs.lib (revision 16076)
++++ src/sra/sdk/libs/vfs/Makefile.vfs.lib (working copy)
+@@ -8,6 +8,9 @@
+ CPPFLAGS = -I$(srcdir) $(SRA_INCLUDE) $(Z_INCLUDE) $(BZ2_INCLUDE) \
+ $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY -DALWAYS_ADD_EXE $(ORIG_CPPFLAGS)
+
+-DLL_LIB = srapath$(DLL) kurl$(DLL) krypto$(DLL) kfg$(DLL) kfs$(DLL) klib$(DLL)
++DLL_LIB = srapath$(FORCE_STATIC) kurl$(FORCE_STATIC) \
++ krypto$(DLL) kfg$(DLL) kfs$(DLL) klib$(DLL)
+
++LIBS = $(SRA_SDK_SYSLIBS)
++
+ LIB_OR_DLL = both
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index ecb94f0..8ee3f16 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -108,14 +108,18 @@ src_prepare() {
# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
local PATCHES=(
"${FILESDIR}"/${P}-conf-opts.patch
- "${FILESDIR}"/${P}-as-needed.patch
- "${FILESDIR}"/${P}-fix-creaders-linking.patch
"${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
- "${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
+ "${FILESDIR}"/${P}-linkage-tuneups.patch
"${FILESDIR}"/${P}-more-patches.patch
- "${FILESDIR}"/${P}-linking.patch
- "${FILESDIR}"/${P}-linking2.patch
+ "${FILESDIR}"/${P}-linkage-tuneups-addons.patch
)
+# "${FILESDIR}"/${P}-as-needed.patch
+# "${FILESDIR}"/${P}-fix-creaders-linking.patch
+# "${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
+# replaced by -linkage-tuneups.patch
+# "${FILESDIR}"/${P}-linking.patch
+# "${FILESDIR}"/${P}-linking2.patch
+# )
# "${FILESDIR}"/${P}-support-autoconf-2.60.patch
# "${FILESDIR}"/${P}-configure.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-06-25 21:57 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2014-06-25 21:57 UTC (permalink / raw
To: gentoo-commits
commit: b5afb3e918e1e43fcc80466e3dafa96550761a12
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 25 21:56:38 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 25 21:56:38 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b5afb3e9
sci-biology/ncbi-tools++-12.0.0: re-added update patch to configure so that we can avoid eautoconf until there is autoconf-2.59 system-wide
---
.../files/ncbi-tools++-12.0.0-configure.patch | 44505 +------------------
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 4 +-
2 files changed, 156 insertions(+), 44353 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch
index 4c77991..d44993d 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch
@@ -1,40433 +1,84 @@
---- ncbi_cxx--12_0_0/src/build-system/configure.ori 2013-05-20 23:03:20.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/configure 2014-06-23 22:22:50.000000000 +0200
-@@ -1,19 +1,13 @@
- #! /bin/sh
- # Guess values for system-dependent variables and create Makefiles.
--# Generated by GNU Autoconf 2.59 for ncbi-tools++ 0.0.
-+# Generated by GNU Autoconf 2.60 for ncbi-tools++ 0.0.
- #
- # Report bugs to <cpp-core@ncbi.nlm.nih.gov>.
- #
--# Copyright (C) 2003 Free Software Foundation, Inc.
-+# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
-+# 2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
- # This configure script is free software; the Free Software Foundation
- # gives unlimited permission to copy, distribute and modify it.
--# Support unset when possible.
--if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
-- as_unset=unset
--else
-- as_unset=false
--fi
--
- ## --------------------- ##
- ## M4sh Initialization. ##
- ## --------------------- ##
-@@ -25,11 +19,35 @@
- # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
- # is contrary to our usage. Disable this feature.
- alias -g '${1+"$@"}'='"$@"'
--elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
-- set -o posix
-+ setopt NO_GLOB_SUBST
-+else
-+ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
- fi
-+BIN_SH=xpg4; export BIN_SH # for Tru64
- DUALCASE=1; export DUALCASE # for MKS sh
-
-+
-+# PATH needs CR
-+# Avoid depending upon Character Ranges.
-+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
-+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
-+as_cr_digits='0123456789'
-+as_cr_alnum=$as_cr_Letters$as_cr_digits
-+
-+# The user is always right.
-+if test "${PATH_SEPARATOR+set}" != set; then
-+ echo "#! /bin/sh" >conf$$.sh
-+ echo "exit 0" >>conf$$.sh
-+ chmod +x conf$$.sh
-+ if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
-+ PATH_SEPARATOR=';'
-+ else
-+ PATH_SEPARATOR=:
-+ fi
-+ rm -f conf$$.sh
-+fi
-+
- # Support unset when possible.
- if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
- as_unset=unset
-@@ -38,8 +56,43 @@
- fi
-
-
-+# IFS
-+# We need space, tab and new line, in precisely that order. Quoting is
-+# there to prevent editors from complaining about space-tab.
-+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
-+# splitting by setting IFS to empty value.)
-+as_nl='
-+'
-+IFS=" "" $as_nl"
-+
-+# Find who we are. Look in the path if we contain no directory separator.
-+case $0 in
-+ *[\\/]* ) as_myself=$0 ;;
-+ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+for as_dir in $PATH
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
-+done
-+IFS=$as_save_IFS
-+
-+ ;;
-+esac
-+# We did not find ourselves, most probably we were run as `sh COMMAND'
-+# in which case we are not to be found in the path.
-+if test "x$as_myself" = x; then
-+ as_myself=$0
-+fi
-+if test ! -f "$as_myself"; then
-+ echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
-+ { (exit 1); exit 1; }
-+fi
-+
- # Work around bugs in pre-3.0 UWIN ksh.
--$as_unset ENV MAIL MAILPATH
-+for as_var in ENV MAIL MAILPATH
-+do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
-+done
- PS1='$ '
- PS2='> '
- PS4='+ '
-@@ -53,18 +106,19 @@
- if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
- eval $as_var=C; export $as_var
- else
-- $as_unset $as_var
-+ ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
- fi
- done
-
- # Required to use basename.
--if expr a : '\(a\)' >/dev/null 2>&1; then
-+if expr a : '\(a\)' >/dev/null 2>&1 &&
-+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
- as_expr=expr
- else
- as_expr=false
- fi
-
--if (basename /) >/dev/null 2>&1 && test "X`basename / 2>&1`" = "X/"; then
-+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
- as_basename=basename
- else
- as_basename=false
-@@ -72,160 +126,394 @@
-
-
- # Name of the executable.
--as_me=`$as_basename "$0" ||
-+as_me=`$as_basename -- "$0" ||
- $as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
- X"$0" : 'X\(//\)$' \| \
-- X"$0" : 'X\(/\)$' \| \
-- . : '\(.\)' 2>/dev/null ||
-+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
- echo X/"$0" |
-- sed '/^.*\/\([^/][^/]*\)\/*$/{ s//\1/; q; }
-- /^X\/\(\/\/\)$/{ s//\1/; q; }
-- /^X\/\(\/\).*/{ s//\1/; q; }
-+ sed '/^.*\/\([^/][^/]*\)\/*$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\/\(\/\/\)$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\/\(\/\).*/{
-+ s//\1/
-+ q
-+ }
- s/.*/./; q'`
-
-+# CDPATH.
-+$as_unset CDPATH
-
--# PATH needs CR, and LINENO needs CR and PATH.
--# Avoid depending upon Character Ranges.
--as_cr_letters='abcdefghijklmnopqrstuvwxyz'
--as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
--as_cr_Letters=$as_cr_letters$as_cr_LETTERS
--as_cr_digits='0123456789'
--as_cr_alnum=$as_cr_Letters$as_cr_digits
-+$as_unset ZSH_VERSION || test "${ZSH_VERSION+set}" != set || { ZSH_VERSION=; export ZSH_VERSION; }
-
--# The user is always right.
--if test "${PATH_SEPARATOR+set}" != set; then
-- echo "#! /bin/sh" >conf$$.sh
-- echo "exit 0" >>conf$$.sh
-- chmod +x conf$$.sh
-- if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
-- PATH_SEPARATOR=';'
-+if test "x$CONFIG_SHELL" = x; then
-+ if (eval "test -z \"\${ZSH_VERSION+set}\" || exit \$?; :") 2>/dev/null; then
-+ as_have_required=yes
- else
-- PATH_SEPARATOR=:
-+ as_have_required=no
- fi
-- rm -f conf$$.sh
-+
-+ if test $as_have_required = yes && (eval "test -z \"\${ZSH_VERSION+set}\" || exit \$?; :
-+(as_func_return () {
-+ (exit \$1)
-+}
-+as_func_success () {
-+ as_func_return 0
-+}
-+as_func_failure () {
-+ as_func_return 1
-+}
-+as_func_ret_success () {
-+ return 0
-+}
-+as_func_ret_failure () {
-+ return 1
-+}
-+
-+exitcode=0
-+if as_func_success; then
-+ :
-+else
-+ exitcode=1
-+ echo as_func_success failed.
- fi
-
-+if as_func_failure; then
-+ exitcode=1
-+ echo as_func_failure succeeded.
-+fi
-
-- as_lineno_1=$LINENO
-- as_lineno_2=$LINENO
-- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
-- test "x$as_lineno_1" != "x$as_lineno_2" &&
-- test "x$as_lineno_3" = "x$as_lineno_2" || {
-- # Find who we are. Look in the path if we contain no path at all
-- # relative or not.
-- case $0 in
-- *[\\/]* ) as_myself=$0 ;;
-- *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--for as_dir in $PATH
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
--done
-+if as_func_ret_success; then
-+ :
-+else
-+ exitcode=1
-+ echo as_func_ret_success failed.
-+fi
-
-- ;;
-- esac
-- # We did not find ourselves, most probably we were run as `sh COMMAND'
-- # in which case we are not to be found in the path.
-- if test "x$as_myself" = x; then
-- as_myself=$0
-+if as_func_ret_failure; then
-+ exitcode=1
-+ echo as_func_ret_failure succeeded.
- fi
-- if test ! -f "$as_myself"; then
-- { echo "$as_me: error: cannot find myself; rerun with an absolute path" >&2
-- { (exit 1); exit 1; }; }
-+
-+if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
-+ :
-+else
-+ exitcode=1
-+ echo positional parameters were not saved.
- fi
-- case $CONFIG_SHELL in
-- '')
-- $as_unset ZSH_VERSION || test "${ZSH_VERSION+set}" != set || { ZSH_VERSION=; export ZSH_VERSION; }
-- for as_base in sh ksh sh5 bash; do
-+
-+test \$exitcode = 0) || { (exit 1); exit 1; }
-+
-+(
-+ as_lineno_1=\$LINENO
-+ as_lineno_2=\$LINENO
-+ test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
-+ test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
-+") 2> /dev/null; then
-+ :
-+else
-+ as_candidate_shells=
- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
-+for as_dir in /usr/bin/posix$PATH_SEPARATOR/bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
- do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- case $as_dir in
- /*)
-- if ("$as_dir/$as_base" -c \
-- 'test -z "$ZSH_VERSION" && {
-+ for as_base in sh ksh sh5 bash; do
-+ as_candidate_shells="$as_candidate_shells $as_dir/$as_base"
-+ done;;
-+ esac
-+done
-+IFS=$as_save_IFS
-+
-+
-+ for as_shell in $as_candidate_shells $SHELL; do
-+ # Try only shells that exist, to save several forks.
-+ if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
-+ { ("$as_shell") 2> /dev/null <<\_ASEOF
-+# Be Bourne compatible
-+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
-+ emulate sh
-+ NULLCMD=:
-+ # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
-+ # is contrary to our usage. Disable this feature.
-+ alias -g '${1+"$@"}'='"$@"'
-+ setopt NO_GLOB_SUBST
-+else
-+ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
-+fi
-+BIN_SH=xpg4; export BIN_SH # for Tru64
-+DUALCASE=1; export DUALCASE # for MKS sh
-+
-+test -z "${ZSH_VERSION+set}" || exit $?; :
-+_ASEOF
-+}; then
-+ CONFIG_SHELL=$as_shell
-+ as_have_required=yes
-+ if { "$as_shell" 2> /dev/null <<\_ASEOF
-+# Be Bourne compatible
-+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
-+ emulate sh
-+ NULLCMD=:
-+ # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
-+ # is contrary to our usage. Disable this feature.
-+ alias -g '${1+"$@"}'='"$@"'
-+ setopt NO_GLOB_SUBST
-+else
-+ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
-+fi
-+BIN_SH=xpg4; export BIN_SH # for Tru64
-+DUALCASE=1; export DUALCASE # for MKS sh
-+
-+test -z "${ZSH_VERSION+set}" || exit $?; :
-+(as_func_return () {
-+ (exit $1)
-+}
-+as_func_success () {
-+ as_func_return 0
-+}
-+as_func_failure () {
-+ as_func_return 1
-+}
-+as_func_ret_success () {
-+ return 0
-+}
-+as_func_ret_failure () {
-+ return 1
-+}
-+
-+exitcode=0
-+if as_func_success; then
-+ :
-+else
-+ exitcode=1
-+ echo as_func_success failed.
-+fi
-+
-+if as_func_failure; then
-+ exitcode=1
-+ echo as_func_failure succeeded.
-+fi
-+
-+if as_func_ret_success; then
-+ :
-+else
-+ exitcode=1
-+ echo as_func_ret_success failed.
-+fi
-+
-+if as_func_ret_failure; then
-+ exitcode=1
-+ echo as_func_ret_failure succeeded.
-+fi
-+
-+if ( set x; as_func_ret_success y && test x = "$1" ); then
-+ :
-+else
-+ exitcode=1
-+ echo positional parameters were not saved.
-+fi
-+
-+test $exitcode = 0) || { (exit 1); exit 1; }
-+
-+(
- as_lineno_1=$LINENO
- as_lineno_2=$LINENO
-- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
- test "x$as_lineno_1" != "x$as_lineno_2" &&
-- test "x$as_lineno_3" = "x$as_lineno_2" ; }') 2>/dev/null
-- then
-- $as_unset BASH_ENV || test "${BASH_ENV+set}" != set || { BASH_ENV=; export BASH_ENV; }
-- $as_unset ENV || test "${ENV+set}" != set || { ENV=; export ENV; }
-- CONFIG_SHELL=$as_dir/$as_base
-- export CONFIG_SHELL
-- exec "$CONFIG_SHELL" "$0" ${1+"$@"}
-- fi;;
-- esac
-+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
-+
-+_ASEOF
-+}; then
-+ break
-+fi
-+
-+fi
-+
- done
-+
-+ if test "x$CONFIG_SHELL" != x; then
-+ for as_var in BASH_ENV ENV
-+ do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
- done
--;;
-- esac
-+ export CONFIG_SHELL
-+ exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
-+fi
-+
-+
-+ if test $as_have_required = no; then
-+ echo This script requires a shell more modern than all the
-+ echo shells that I found on your system. Please install a
-+ echo modern shell, or manually run the script under such a
-+ echo shell if you do have one.
-+ { (exit 1); exit 1; }
-+fi
-+
-+
-+fi
-+
-+fi
-+
-+# Support unset when possible.
-+if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
-+ as_unset=unset
-+else
-+ as_unset=false
-+fi
-+
-+
-+
-+(eval "test -z \"\${ZSH_VERSION+set}\" || exit \$?; as_func_return () {
-+ (exit \$1)
-+}
-+as_func_success () {
-+ as_func_return 0
-+}
-+as_func_failure () {
-+ as_func_return 1
-+}
-+as_func_ret_success () {
-+ return 0
-+}
-+as_func_ret_failure () {
-+ return 1
-+}
-+
-+exitcode=0
-+if as_func_success; then
-+ :
-+else
-+ exitcode=1
-+ echo as_func_success failed.
-+fi
-+
-+if as_func_failure; then
-+ exitcode=1
-+ echo as_func_failure succeeded.
-+fi
-+
-+if as_func_ret_success; then
-+ :
-+else
-+ exitcode=1
-+ echo as_func_ret_success failed.
-+fi
-+
-+if as_func_ret_failure; then
-+ exitcode=1
-+ echo as_func_ret_failure succeeded.
-+fi
-+
-+if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
-+ :
-+else
-+ exitcode=1
-+ echo positional parameters were not saved.
-+fi
-+
-+test \$exitcode = 0") || {
-+ echo No shell found that supports shell functions.
-+ echo Please tell autoconf@gnu.org about your system,
-+ echo including any error possibly output before this
-+ echo message
-+}
-+
-+
-+
-+ as_lineno_1=$LINENO
-+ as_lineno_2=$LINENO
-+ test "x$as_lineno_1" != "x$as_lineno_2" &&
-+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
-
- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
- # uniformly replaced by the line number. The first 'sed' inserts a
-- # line-number line before each line; the second 'sed' does the real
-- # work. The second script uses 'N' to pair each line-number line
-- # with the numbered line, and appends trailing '-' during
-- # substitution so that $LINENO is not a special case at line end.
-+ # line-number line after each line using $LINENO; the second 'sed'
-+ # does the real work. The second script uses 'N' to pair each
-+ # line-number line with the line containing $LINENO, and appends
-+ # trailing '-' during substitution so that $LINENO is not a special
-+ # case at line end.
- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
-- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
-- sed '=' <$as_myself |
-+ # scripts with optimization help from Paolo Bonzini. Blame Lee
-+ # E. McMahon (1931-1989) for sed's syntax. :-)
-+ sed -n '
-+ p
-+ /[$]LINENO/=
-+ ' <$as_myself |
- sed '
-+ s/[$]LINENO.*/&-/
-+ t lineno
-+ b
-+ :lineno
- N
-- s,$,-,
- : loop
-- s,^\(['$as_cr_digits']*\)\(.*\)[$]LINENO\([^'$as_cr_alnum'_]\),\1\2\1\3,
-+ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
- t loop
-- s,-$,,
-- s,^['$as_cr_digits']*\n,,
-+ s/-\n.*//
- ' >$as_me.lineno &&
-- chmod +x $as_me.lineno ||
-+ chmod +x "$as_me.lineno" ||
- { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
- { (exit 1); exit 1; }; }
-
- # Don't try to exec as it changes $[0], causing all sort of problems
- # (the dirname of $[0] is not the place where we might find the
-- # original and so on. Autoconf is especially sensible to this).
-- . ./$as_me.lineno
-+ # original and so on. Autoconf is especially sensitive to this).
-+ . "./$as_me.lineno"
- # Exit status is that of the last command.
- exit
- }
-
-
--case `echo "testing\c"; echo 1,2,3`,`echo -n testing; echo 1,2,3` in
-- *c*,-n*) ECHO_N= ECHO_C='
--' ECHO_T=' ' ;;
-- *c*,* ) ECHO_N=-n ECHO_C= ECHO_T= ;;
-- *) ECHO_N= ECHO_C='\c' ECHO_T= ;;
-+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
-+ as_dirname=dirname
-+else
-+ as_dirname=false
-+fi
-+
-+ECHO_C= ECHO_N= ECHO_T=
-+case `echo -n x` in
-+-n*)
-+ case `echo 'x\c'` in
-+ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
-+ *) ECHO_C='\c';;
-+ esac;;
-+*)
-+ ECHO_N='-n';;
- esac
-
--if expr a : '\(a\)' >/dev/null 2>&1; then
-+if expr a : '\(a\)' >/dev/null 2>&1 &&
-+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
- as_expr=expr
- else
- as_expr=false
- fi
-
- rm -f conf$$ conf$$.exe conf$$.file
-+if test -d conf$$.dir; then
-+ rm -f conf$$.dir/conf$$.file
-+else
-+ rm -f conf$$.dir
-+ mkdir conf$$.dir
-+fi
- echo >conf$$.file
- if ln -s conf$$.file conf$$ 2>/dev/null; then
-- # We could just check for DJGPP; but this test a) works b) is more generic
-- # and c) will remain valid once DJGPP supports symlinks (DJGPP 2.04).
-- if test -f conf$$.exe; then
-- # Don't use ln at all; we don't have any links
-- as_ln_s='cp -p'
-- else
- as_ln_s='ln -s'
-- fi
-+ # ... but there are two gotchas:
-+ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
-+ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
-+ # In both cases, we have to default to `cp -p'.
-+ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
-+ as_ln_s='cp -p'
- elif ln conf$$.file conf$$ 2>/dev/null; then
- as_ln_s=ln
- else
- as_ln_s='cp -p'
- fi
--rm -f conf$$ conf$$.exe conf$$.file
-+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
-+rmdir conf$$.dir 2>/dev/null
-
- if mkdir -p . 2>/dev/null; then
- as_mkdir_p=:
-@@ -234,7 +522,19 @@
- as_mkdir_p=false
- fi
-
--as_executable_p="test -f"
-+# Find out whether ``test -x'' works. Don't use a zero-byte file, as
-+# systems may use methods other than mode bits to determine executability.
-+cat >conf$$.file <<_ASEOF
-+#! /bin/sh
-+exit 0
-+_ASEOF
-+chmod +x conf$$.file
-+if test -x conf$$.file >/dev/null 2>&1; then
-+ as_executable_p="test -x"
-+else
-+ as_executable_p=:
-+fi
-+rm -f conf$$.file
-
- # Sed expression to map a string onto a valid CPP name.
- as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
-@@ -243,39 +543,27 @@
- as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
-
-
--# IFS
--# We need space, tab and new line, in precisely that order.
--as_nl='
--'
--IFS=" $as_nl"
--
--# CDPATH.
--$as_unset CDPATH
-
-+exec 7<&0 </dev/null 6>&1
-
- # Name of the host.
- # hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
- # so uname gets run too.
- ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
-
--exec 6>&1
--
- #
- # Initializations.
- #
- ac_default_prefix=/usr/local
-+ac_clean_files=
- ac_config_libobj_dir=.
-+LIBOBJS=
- cross_compiling=no
- subdirs=
- MFLAGS=
- MAKEFLAGS=
- SHELL=${CONFIG_SHELL-/bin/sh}
-
--# Maximum number of lines to put in a shell here document.
--# This variable seems obsolete. It should probably be removed, and
--# only ac_max_sed_lines should be used.
--: ${ac_max_here_lines=38}
--
- # Identity of this package.
- PACKAGE_NAME='ncbi-tools++'
- PACKAGE_TARNAME='ncbi-tools--'
-@@ -312,17 +600,441 @@
- #endif
- #if HAVE_INTTYPES_H
- # include <inttypes.h>
--#else
-+#endif
- # if HAVE_STDINT_H
- # include <stdint.h>
- # endif
--#endif
- #if HAVE_UNISTD_H
- # include <unistd.h>
- #endif"
-
--ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PROJECTS build build_cpu build_vendor build_os host host_cpu host_vendor host_os INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT CXX CXXFLAGS ac_ct_CXX MT_SFX DLL DLL_LIB_SETTING IF_WITH_DLL UNLESS_WITH_DLL STATIC USUAL_AND_DLL USUAL_AND_LIB LN_S RANLIB ac_ct_RANLIB AR STRIP DISTCC CCACHE TAIL TOUCH EGREP VALGRIND_PATH CXXCPP TCHECK_CL AMQ CPP Z_INCLUDE Z_LIBS BZ2_INCLUDE BZ2_LIBS LZO_INCLUDE LZO_LIBS PCRE_INCLUDE PCRE_LIBS LIBGCRYPT_CONFIG GCRYPT_INCLUDE GCRYPT_LIBS LIBGNUTLS_CONFIG GNUTLS_INCLUDE GNUTLS_LIBS OPENSSL_INCLUDE OPENSSL_LIBS KRB5_CONFIG KRB5_INCLUDE KRB5_LIBS CURL_INCLUDE CURL_LIBS FTD
S64_INCLUDE FTDS64_LIBS FTDS64_LIB FTDS64_CTLIB_INCLUDE FTDS64_CTLIB_LIBS FTDS64_CTLIB_LIB FTDS_INCLUDE FTDS_LIBS FTDS_LIB freetds ftds64 mysql_config PYTHON PYTHON_INCLUDE PYTHON_LIBS PYTHON23 PYTHON23_INCLUDE PYTHON23_LIBS PYTHON24 PYTHON24_INCLUDE PYTHON24_LIBS PYTHON25 PYTHON25_INCLUDE PYTHON25_LIBS PERL _ACJNI_JAVAC X_CFLAGS X_PRE_LIBS X_LIBS X_EXTRA_LIBS wxconf EXPAT_INCLUDE EXPAT_LIBS SABLOT_INCLUDE SABLOT_LIBS LIBXML_INCLUDE LIBXML_LIBS LIBXSLT_INCLUDE LIBXSLT_LIBS XSLTPROC LIBEXSLT_INCLUDE LIBEXSLT_LIBS SQLITE3_INCLUDE SQLITE3_LIBS OECHEM_INCLUDE OECHEM_LIBS SGE_INCLUDE SGE_LIBS MUPARSER_INCLUDE MUPARSER_LIBS HDF5_INCLUDE HDF5_LIBS JPEG_INCLUDE JPEG_LIBS PNG_INCLUDE PNG_LIBS TIFF_INCLUDE TIFF_LIBS UNGIF_INCLUDE UNGIF_LIBS GIF_INCLUDE GIF_LIBS XPM_INCLUDE XPM_LIBS freetype_config FTGL_INCLUDE FTGL_LIBS MAGIC_INCLUDE MAGIC_LIBS MIMETIC_INCLUDE MIMETIC_LIBS signature build_root top_srcdir srcdir status_dir builddir runpath ncbi_runpath c_ncbi_runpath LINK C_LINK TAIL_N EGREP_Q
FAST_CFLAGS FAST_CXXFLAGS OBJCXX_CXXFLAGS DEPFLAGS DEPFLAGS_POST FAST_LDFLAGS APP_LDFLAGS DLL_LDFLAGS C_LIBS OBJCXX_LIBS GCCPCH RUNPATH_ORIGIN NO_STRICT_ALIASING D_SFX DEBUG_SFX LIB_OR_DLL FORCE_STATIC_LIB APP_LIB_SETTING APP_LIBS_SETTING LINK_DLL has_dll_loadable LINK_LOADABLE CFLAGS_DLL CXXFLAGS_DLL ALLOW_UNDEF FORBID_UNDEF OPT_GROUPS local_lbsm ncbi_crypt CONNEXT XCONNEXT serial bdb dbapi objects gui algo app internal sra check CHECK_ARG CHECK_TOOLS CHECK_TIMEOUT_MULT CHECK_OS_NAME FEATURES script_shell make_shell obj_ext lib_pre lib_l_pre lib_ext dll_ext loadable_ext lib_l_ext exe_ext f_compile f_outobj f_outlib f_libpath f_runpath f_outexe BDB_LIB BDB_CACHE_LIB DBAPI_DRIVER DBAPI_CTLIB DBAPI_DBLIB DBAPI_MYSQL DBAPI_ODBC THREAD_LIBS NCBIATOMIC_LIB NETWORK_LIBS NETWORK_PURE_LIBS RESOLVER_LIBS MATH_LIBS KSTAT_LIBS RPCSVC_LIBS CRYPT_LIBS DL_LIBS RT_LIBS UUID_LIBS DEMANGLE_LIBS ICONV_LIBS Z_LIB BZ2_LIB PCREPOSIX_LIBS PCRE_LIB OPENSSL_STATIC_LIBS TLS_INCLUDE TLS_LIBS SYBASE_PATH SYB
ASE_LCL_PATH SYBASE_INCLUDE SYBASE_LIBS SYBASE_DLLS SYBASE_DBLIBS MYSQL_INCLUDE MYSQL_LIBS BERKELEYDB_INCLUDE BERKELEYDB_LIBS BERKELEYDB_STATIC_LIBS BERKELEYDB_CXX_LIBS BERKELEYDB_CXX_STATIC_LIBS ODBC_INCLUDE ODBC_LIBS BOOST_INCLUDE BOOST_LIBPATH BOOST_TAG BOOST_REGEX_LIBS BOOST_REGEX_STATIC_LIBS BOOST_SYSTEM_LIBS BOOST_SYSTEM_STATIC_LIBS BOOST_TEST_PEM_LIBS BOOST_TEST_PEM_STATIC_LIBS BOOST_TEST_TEM_LIBS BOOST_TEST_TEM_STATIC_LIBS BOOST_TEST_UTF_LIBS BOOST_TEST_UTF_STATIC_LIBS BOOST_THREAD_LIBS BOOST_THREAD_STATIC_LIBS NCBI_C_INCLUDE NCBI_C_LIBPATH OPENGL_INCLUDE OPENGL_LIBS OPENGL_STATIC_LIBS OSMESA_INCLUDE OSMESA_LIBS OSMESA_STATIC_LIBS GLUT_INCLUDE GLUT_LIBS GLEW_INCLUDE GLEW_LIBS GLEW_STATIC_LIBS WXWIDGETS_INCLUDE WXWIDGETS_LIBS WXWIDGETS_STATIC_LIBS WXWIDGETS_GL_LIBS WXWIDGETS_GL_STATIC_LIBS WXWIDGETS_POST_LINK FASTCGI_INCLUDE FASTCGI_LIBS FASTCGI_OBJS NCBI_SSS_INCLUDE NCBI_SSS_LIBPATH LIBSSSUTILS LIBSSSDB sssutils SP_INCLUDE SP_LIBS ORBACUS_INCLUDE ORBACUS_LIBPATH LIBOB LIBIMR
ICU_CONFIG ICU_INCLUDE ICU_LIBS ICU_STATIC_LIBS EXPAT_STATIC_LIBS SABLOT_STATIC_LIBS LIBXML_STATIC_LIBS LIBXSLT_STATIC_LIBS LIBEXSLT_STATIC_LIBS XERCES_INCLUDE XERCES_LIBS XERCES_STATIC_LIBS XALAN_INCLUDE XALAN_LIBS XALAN_STATIC_LIBS ZORBA_INCLUDE ZORBA_LIBS ZORBA_STATIC_LIBS SQLITE3_STATIC_LIBS FREETYPE_INCLUDE FREETYPE_LIBS ncbi_xreader_pubseqos ncbi_xreader_pubseqos2 UNLESS_PUBSEQOS PERL_INCLUDE PERL_LIBS JDK_PATH JDK_INCLUDE ncbi_java NCBI_C_ncbi BINCOPY APP_NOCOPY APP_OR_NULL IF_REBUILDING_LIBS IF_REBUILDING_CONDITIONALLY IF_DEACTIVATING configurables_mfname CC_FILTER CXX_FILTER AR_FILTER LINK_FILTER CC_WRAPPER CXX_WRAPPER AR_WRAPPER LINK_WRAPPER KeepStateTarget Rules serial_ws50_rtti_kludge ncbicntr UNIX_SRC UNIX_USR_PROJ compiler compiler_root compiler_version COMPILER OSTYPE NCBI_PLATFORM_BITS LIBOBJS LTLIBOBJS'
-+ac_subst_vars='SHELL
-+PATH_SEPARATOR
-+PACKAGE_NAME
-+PACKAGE_TARNAME
-+PACKAGE_VERSION
-+PACKAGE_STRING
-+PACKAGE_BUGREPORT
-+exec_prefix
-+prefix
-+program_transform_name
-+bindir
-+sbindir
-+libexecdir
-+datarootdir
-+datadir
-+sysconfdir
-+sharedstatedir
-+localstatedir
-+includedir
-+oldincludedir
-+docdir
-+infodir
-+htmldir
-+dvidir
-+pdfdir
-+psdir
-+libdir
-+localedir
-+mandir
-+DEFS
-+ECHO_C
-+ECHO_N
-+ECHO_T
-+LIBS
-+build_alias
-+host_alias
-+target_alias
-+PROJECTS
-+build
-+build_cpu
-+build_vendor
-+build_os
-+host
-+host_cpu
-+host_vendor
-+host_os
-+INSTALL_PROGRAM
-+INSTALL_SCRIPT
-+INSTALL_DATA
-+CC
-+CFLAGS
-+LDFLAGS
-+CPPFLAGS
-+ac_ct_CC
-+EXEEXT
-+OBJEXT
-+CXX
-+CXXFLAGS
-+ac_ct_CXX
-+MT_SFX
-+DLL
-+DLL_LIB_SETTING
-+IF_WITH_DLL
-+UNLESS_WITH_DLL
-+STATIC
-+USUAL_AND_DLL
-+USUAL_AND_LIB
-+LN_S
-+RANLIB
-+AR
-+STRIP
-+DISTCC
-+CCACHE
-+TAIL
-+TOUCH
-+GREP
-+EGREP
-+VALGRIND_PATH
-+LDD
-+CXXCPP
-+TCHECK_CL
-+AMQ
-+CPP
-+Z_INCLUDE
-+Z_LIBS
-+BZ2_INCLUDE
-+BZ2_LIBS
-+LZO_INCLUDE
-+LZO_LIBS
-+PCRE_INCLUDE
-+PCRE_LIBS
-+LIBGCRYPT_CONFIG
-+GCRYPT_INCLUDE
-+GCRYPT_LIBS
-+LIBGNUTLS_CONFIG
-+GNUTLS_INCLUDE
-+GNUTLS_LIBS
-+OPENSSL_INCLUDE
-+OPENSSL_LIBS
-+KRB5_CONFIG
-+KRB5_INCLUDE
-+KRB5_LIBS
-+CURL_INCLUDE
-+CURL_LIBS
-+FTDS64_INCLUDE
-+FTDS64_LIBS
-+FTDS64_LIB
-+FTDS64_CTLIB_INCLUDE
-+FTDS64_CTLIB_LIBS
-+FTDS64_CTLIB_LIB
-+FTDS_INCLUDE
-+FTDS_LIBS
-+FTDS_LIB
-+freetds
-+ftds64
-+mysql_config
-+PYTHON
-+PYTHON_INCLUDE
-+PYTHON_LIBS
-+PYTHON23
-+PYTHON23_INCLUDE
-+PYTHON23_LIBS
-+PYTHON24
-+PYTHON24_INCLUDE
-+PYTHON24_LIBS
-+PYTHON25
-+PYTHON25_INCLUDE
-+PYTHON25_LIBS
-+PERL
-+_ACJNI_JAVAC
-+XMKMF
-+X_CFLAGS
-+X_PRE_LIBS
-+X_LIBS
-+X_EXTRA_LIBS
-+wxconf
-+EXPAT_INCLUDE
-+EXPAT_LIBS
-+SABLOT_INCLUDE
-+SABLOT_LIBS
-+LIBXML_INCLUDE
-+LIBXML_LIBS
-+LIBXSLT_INCLUDE
-+LIBXSLT_LIBS
-+XSLTPROC
-+LIBEXSLT_INCLUDE
-+LIBEXSLT_LIBS
-+SQLITE3_INCLUDE
-+SQLITE3_LIBS
-+OECHEM_INCLUDE
-+OECHEM_LIBS
-+SGE_INCLUDE
-+SGE_LIBS
-+MUPARSER_INCLUDE
-+MUPARSER_LIBS
-+HDF5_INCLUDE
-+HDF5_LIBS
-+JPEG_INCLUDE
-+JPEG_LIBS
-+PNG_INCLUDE
-+PNG_LIBS
-+TIFF_INCLUDE
-+TIFF_LIBS
-+UNGIF_INCLUDE
-+UNGIF_LIBS
-+GIF_INCLUDE
-+GIF_LIBS
-+XPM_INCLUDE
-+XPM_LIBS
-+freetype_config
-+FTGL_INCLUDE
-+FTGL_LIBS
-+MAGIC_INCLUDE
-+MAGIC_LIBS
-+MIMETIC_INCLUDE
-+MIMETIC_LIBS
-+GSOAP_SOAPCPP2
-+GSOAP_WSDL2H
-+GSOAP_INCLUDE
-+GSOAP_LIBS
-+MONGODB_INCLUDE
-+MONGODB_LIBS
-+signature
-+build_root
-+top_srcdir
-+srcdir
-+status_dir
-+builddir
-+runpath
-+ncbi_runpath
-+c_ncbi_runpath
-+LINK
-+C_LINK
-+TAIL_N
-+EGREP_Q
-+LDD_R
-+FAST_CFLAGS
-+FAST_CXXFLAGS
-+OBJCXX_CXXFLAGS
-+DEPFLAGS
-+DEPFLAGS_POST
-+FAST_LDFLAGS
-+APP_LDFLAGS
-+DLL_LDFLAGS
-+C_LIBS
-+OBJCXX_LIBS
-+GCCPCH
-+RUNPATH_ORIGIN
-+NO_STRICT_ALIASING
-+D_SFX
-+DEBUG_SFX
-+LIB_OR_DLL
-+FORCE_STATIC_LIB
-+APP_LIB_SETTING
-+APP_LIBS_SETTING
-+LINK_DLL
-+has_dll_loadable
-+LINK_LOADABLE
-+CFLAGS_DLL
-+CXXFLAGS_DLL
-+ALLOW_UNDEF
-+FORBID_UNDEF
-+OPT_GROUPS
-+local_lbsm
-+ncbi_crypt
-+CONNEXT
-+XCONNEXT
-+serial
-+bdb
-+dbapi
-+objects
-+gui
-+algo
-+app
-+internal
-+check
-+CHECK_ARG
-+CHECK_TOOLS
-+CHECK_TIMEOUT_MULT
-+CHECK_OS_NAME
-+FEATURES
-+script_shell
-+make_shell
-+obj_ext
-+lib_pre
-+lib_l_pre
-+lib_ext
-+dll_ext
-+loadable_ext
-+lib_l_ext
-+exe_ext
-+f_compile
-+f_outobj
-+f_outlib
-+f_libpath
-+f_runpath
-+f_outexe
-+BDB_LIB
-+BDB_CACHE_LIB
-+DBAPI_DRIVER
-+DBAPI_CTLIB
-+DBAPI_DBLIB
-+DBAPI_MYSQL
-+DBAPI_ODBC
-+THREAD_LIBS
-+NCBIATOMIC_LIB
-+OPENMP_FLAGS
-+NETWORK_LIBS
-+NETWORK_PURE_LIBS
-+RESOLVER_LIBS
-+MATH_LIBS
-+KSTAT_LIBS
-+RPCSVC_LIBS
-+CRYPT_LIBS
-+DL_LIBS
-+RT_LIBS
-+UUID_LIBS
-+DEMANGLE_LIBS
-+ICONV_LIBS
-+Z_LIB
-+BZ2_LIB
-+PCREPOSIX_LIBS
-+PCRE_LIB
-+OPENSSL_STATIC_LIBS
-+TLS_INCLUDE
-+TLS_LIBS
-+SYBASE_PATH
-+SYBASE_LCL_PATH
-+SYBASE_INCLUDE
-+SYBASE_LIBS
-+SYBASE_DLLS
-+SYBASE_DBLIBS
-+MYSQL_INCLUDE
-+MYSQL_LIBS
-+BERKELEYDB_INCLUDE
-+BERKELEYDB_LIBS
-+BERKELEYDB_STATIC_LIBS
-+BERKELEYDB_CXX_LIBS
-+BERKELEYDB_CXX_STATIC_LIBS
-+ODBC_INCLUDE
-+ODBC_LIBS
-+BOOST_INCLUDE
-+BOOST_LIBPATH
-+BOOST_TAG
-+BOOST_FILESYSTEM_LIBS
-+BOOST_FILESYSTEM_STATIC_LIBS
-+BOOST_REGEX_LIBS
-+BOOST_REGEX_STATIC_LIBS
-+BOOST_SYSTEM_LIBS
-+BOOST_SYSTEM_STATIC_LIBS
-+BOOST_TEST_PEM_LIBS
-+BOOST_TEST_PEM_STATIC_LIBS
-+BOOST_TEST_TEM_LIBS
-+BOOST_TEST_TEM_STATIC_LIBS
-+BOOST_TEST_UTF_LIBS
-+BOOST_TEST_UTF_STATIC_LIBS
-+BOOST_THREAD_LIBS
-+BOOST_THREAD_STATIC_LIBS
-+NCBI_C_INCLUDE
-+NCBI_C_LIBPATH
-+OPENGL_INCLUDE
-+OPENGL_LIBS
-+OPENGL_STATIC_LIBS
-+OSMESA_INCLUDE
-+OSMESA_LIBS
-+OSMESA_STATIC_LIBS
-+GLUT_INCLUDE
-+GLUT_LIBS
-+GLEW_INCLUDE
-+GLEW_LIBS
-+GLEW_STATIC_LIBS
-+WXWIDGETS_INCLUDE
-+WXWIDGETS_LIBS
-+WXWIDGETS_STATIC_LIBS
-+WXWIDGETS_GL_LIBS
-+WXWIDGETS_GL_STATIC_LIBS
-+WXWIDGETS_POST_LINK
-+FASTCGI_INCLUDE
-+FASTCGI_LIBS
-+FASTCGI_OBJS
-+NCBI_SSS_INCLUDE
-+NCBI_SSS_LIBPATH
-+LIBSSSUTILS
-+LIBSSSDB
-+sssutils
-+SP_INCLUDE
-+SP_LIBS
-+ORBACUS_INCLUDE
-+ORBACUS_LIBPATH
-+LIBOB
-+LIBIMR
-+ICU_CONFIG
-+ICU_INCLUDE
-+ICU_LIBS
-+ICU_STATIC_LIBS
-+EXPAT_STATIC_LIBS
-+SABLOT_STATIC_LIBS
-+LIBXML_STATIC_LIBS
-+LIBXSLT_STATIC_LIBS
-+LIBEXSLT_STATIC_LIBS
-+XERCES_INCLUDE
-+XERCES_LIBS
-+XERCES_STATIC_LIBS
-+XALAN_INCLUDE
-+XALAN_LIBS
-+XALAN_STATIC_LIBS
-+ZORBA_INCLUDE
-+ZORBA_LIBS
-+ZORBA_STATIC_LIBS
-+SQLITE3_STATIC_LIBS
-+FREETYPE_INCLUDE
-+FREETYPE_LIBS
-+GSOAP_PATH
-+MONGODB_STATIC_LIBS
-+ncbi_xreader_pubseqos
-+ncbi_xreader_pubseqos2
-+UNLESS_PUBSEQOS
-+PERL_INCLUDE
-+PERL_LIBS
-+JDK_PATH
-+JDK_INCLUDE
-+ncbi_java
-+NCBI_C_ncbi
-+BINCOPY
-+APP_NOCOPY
-+APP_OR_NULL
-+IF_REBUILDING_LIBS
-+IF_REBUILDING_CONDITIONALLY
-+IF_DEACTIVATING
-+configurables_mfname
-+CC_FILTER
-+CXX_FILTER
-+AR_FILTER
-+LINK_FILTER
-+CC_WRAPPER
-+CXX_WRAPPER
-+AR_WRAPPER
-+LINK_WRAPPER
-+KeepStateTarget
-+Rules
-+serial_ws50_rtti_kludge
-+ncbicntr
-+UNIX_SRC
-+UNIX_USR_PROJ
-+compiler
-+compiler_root
-+compiler_version
-+COMPILER
-+OSTYPE
-+NCBI_PLATFORM_BITS
-+LIBOBJS
-+LTLIBOBJS'
- ac_subst_files=''
-+ ac_precious_vars='build_alias
-+host_alias
-+target_alias
-+CC
-+CFLAGS
-+LDFLAGS
-+CPPFLAGS
-+CXX
-+CXXFLAGS
-+CCC
-+CXXCPP
-+CPP
-+XMKMF'
-+
-
- # Initialize some variables set by options.
- ac_init_help=
-@@ -349,34 +1061,48 @@
- # and all the variables that are supposed to be based on exec_prefix
- # by default will actually change.
- # Use braces instead of parens because sh, perl, etc. also accept them.
-+# (The list follows the same order as the GNU Coding Standards.)
- bindir='${exec_prefix}/bin'
- sbindir='${exec_prefix}/sbin'
- libexecdir='${exec_prefix}/libexec'
--datadir='${prefix}/share'
-+datarootdir='${prefix}/share'
-+datadir='${datarootdir}'
- sysconfdir='${prefix}/etc'
- sharedstatedir='${prefix}/com'
- localstatedir='${prefix}/var'
--libdir='${exec_prefix}/lib'
- includedir='${prefix}/include'
- oldincludedir='/usr/include'
--infodir='${prefix}/info'
--mandir='${prefix}/man'
-+docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
-+infodir='${datarootdir}/info'
-+htmldir='${docdir}'
-+dvidir='${docdir}'
-+pdfdir='${docdir}'
-+psdir='${docdir}'
-+libdir='${exec_prefix}/lib'
-+localedir='${datarootdir}/locale'
-+mandir='${datarootdir}/man'
-
- ac_prev=
-+ac_dashdash=
- for ac_option
- do
- # If the previous option needs an argument, assign it.
- if test -n "$ac_prev"; then
-- eval "$ac_prev=\$ac_option"
-+ eval $ac_prev=\$ac_option
- ac_prev=
- continue
- fi
-
-- ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
-+ case $ac_option in
-+ *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
-+ *) ac_optarg=yes ;;
-+ esac
-
- # Accept the important Cygnus configure options, so we can diagnose typos.
-
-- case $ac_option in
-+ case $ac_dashdash$ac_option in
-+ --)
-+ ac_dashdash=yes ;;
-
- -bindir | --bindir | --bindi | --bind | --bin | --bi)
- ac_prev=bindir ;;
-@@ -398,12 +1124,18 @@
- --config-cache | -C)
- cache_file=config.cache ;;
-
-- -datadir | --datadir | --datadi | --datad | --data | --dat | --da)
-+ -datadir | --datadir | --datadi | --datad)
- ac_prev=datadir ;;
-- -datadir=* | --datadir=* | --datadi=* | --datad=* | --data=* | --dat=* \
-- | --da=*)
-+ -datadir=* | --datadir=* | --datadi=* | --datad=*)
- datadir=$ac_optarg ;;
-
-+ -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
-+ | --dataroo | --dataro | --datar)
-+ ac_prev=datarootdir ;;
-+ -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
-+ | --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
-+ datarootdir=$ac_optarg ;;
-+
- -disable-* | --disable-*)
- ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
- # Reject names that are not valid shell variable names.
-@@ -411,7 +1143,17 @@
- { echo "$as_me: error: invalid feature name: $ac_feature" >&2
- { (exit 1); exit 1; }; }
- ac_feature=`echo $ac_feature | sed 's/-/_/g'`
-- eval "enable_$ac_feature=no" ;;
-+ eval enable_$ac_feature=no ;;
-+
-+ -docdir | --docdir | --docdi | --doc | --do)
-+ ac_prev=docdir ;;
-+ -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
-+ docdir=$ac_optarg ;;
-+
-+ -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
-+ ac_prev=dvidir ;;
-+ -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
-+ dvidir=$ac_optarg ;;
-
- -enable-* | --enable-*)
- ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
-@@ -420,11 +1162,7 @@
- { echo "$as_me: error: invalid feature name: $ac_feature" >&2
- { (exit 1); exit 1; }; }
- ac_feature=`echo $ac_feature | sed 's/-/_/g'`
-- case $ac_option in
-- *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
-- *) ac_optarg=yes ;;
-- esac
-- eval "enable_$ac_feature='$ac_optarg'" ;;
-+ eval enable_$ac_feature=\$ac_optarg ;;
-
- -exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
- | --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
-@@ -451,6 +1189,12 @@
- -host=* | --host=* | --hos=* | --ho=*)
- host_alias=$ac_optarg ;;
-
-+ -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
-+ ac_prev=htmldir ;;
-+ -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
-+ | --ht=*)
-+ htmldir=$ac_optarg ;;
-+
- -includedir | --includedir | --includedi | --included | --include \
- | --includ | --inclu | --incl | --inc)
- ac_prev=includedir ;;
-@@ -475,13 +1219,16 @@
- | --libexe=* | --libex=* | --libe=*)
- libexecdir=$ac_optarg ;;
-
-+ -localedir | --localedir | --localedi | --localed | --locale)
-+ ac_prev=localedir ;;
-+ -localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
-+ localedir=$ac_optarg ;;
-+
- -localstatedir | --localstatedir | --localstatedi | --localstated \
-- | --localstate | --localstat | --localsta | --localst \
-- | --locals | --local | --loca | --loc | --lo)
-+ | --localstate | --localstat | --localsta | --localst | --locals)
- ac_prev=localstatedir ;;
- -localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
-- | --localstate=* | --localstat=* | --localsta=* | --localst=* \
-- | --locals=* | --local=* | --loca=* | --loc=* | --lo=*)
-+ | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
- localstatedir=$ac_optarg ;;
-
- -mandir | --mandir | --mandi | --mand | --man | --ma | --m)
-@@ -546,6 +1293,16 @@
- | --progr-tra=* | --program-tr=* | --program-t=*)
- program_transform_name=$ac_optarg ;;
-
-+ -pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
-+ ac_prev=pdfdir ;;
-+ -pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
-+ pdfdir=$ac_optarg ;;
-+
-+ -psdir | --psdir | --psdi | --psd | --ps)
-+ ac_prev=psdir ;;
-+ -psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
-+ psdir=$ac_optarg ;;
-+
- -q | -quiet | --quiet | --quie | --qui | --qu | --q \
- | -silent | --silent | --silen | --sile | --sil)
- silent=yes ;;
-@@ -602,11 +1359,7 @@
- { echo "$as_me: error: invalid package name: $ac_package" >&2
- { (exit 1); exit 1; }; }
- ac_package=`echo $ac_package| sed 's/-/_/g'`
-- case $ac_option in
-- *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
-- *) ac_optarg=yes ;;
-- esac
-- eval "with_$ac_package='$ac_optarg'" ;;
-+ eval with_$ac_package=\$ac_optarg ;;
-
- -without-* | --without-*)
- ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
-@@ -615,7 +1368,7 @@
- { echo "$as_me: error: invalid package name: $ac_package" >&2
- { (exit 1); exit 1; }; }
- ac_package=`echo $ac_package | sed 's/-/_/g'`
-- eval "with_$ac_package=no" ;;
-+ eval with_$ac_package=no ;;
-
- --x)
- # Obsolete; use --with-x.
-@@ -646,8 +1399,7 @@
- expr "x$ac_envvar" : ".*[^_$as_cr_alnum]" >/dev/null &&
- { echo "$as_me: error: invalid variable name: $ac_envvar" >&2
- { (exit 1); exit 1; }; }
-- ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`
-- eval "$ac_envvar='$ac_optarg'"
-+ eval $ac_envvar=\$ac_optarg
- export $ac_envvar ;;
-
- *)
-@@ -667,27 +1419,19 @@
- { (exit 1); exit 1; }; }
- fi
-
--# Be sure to have absolute paths.
--for ac_var in exec_prefix prefix
--do
-- eval ac_val=$`echo $ac_var`
-- case $ac_val in
-- [\\/$]* | ?:[\\/]* | NONE | '' ) ;;
-- *) { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
-- { (exit 1); exit 1; }; };;
-- esac
--done
--
--# Be sure to have absolute paths.
--for ac_var in bindir sbindir libexecdir datadir sysconfdir sharedstatedir \
-- localstatedir libdir includedir oldincludedir infodir mandir
-+# Be sure to have absolute directory names.
-+for ac_var in exec_prefix prefix bindir sbindir libexecdir datarootdir \
-+ datadir sysconfdir sharedstatedir localstatedir includedir \
-+ oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
-+ libdir localedir mandir
- do
-- eval ac_val=$`echo $ac_var`
-+ eval ac_val=\$$ac_var
- case $ac_val in
-- [\\/$]* | ?:[\\/]* ) ;;
-- *) { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
-- { (exit 1); exit 1; }; };;
-+ [\\/$]* | ?:[\\/]* ) continue;;
-+ NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
- esac
-+ { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
-+ { (exit 1); exit 1; }; }
- done
-
- # There might be people who depend on the old broken behavior: `$host'
-@@ -714,86 +1458,158 @@
- test "$silent" = yes && exec 6>/dev/null
-
-
-+ac_pwd=`pwd` && test -n "$ac_pwd" &&
-+ac_ls_di=`ls -di .` &&
-+ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
-+ { echo "$as_me: error: Working directory cannot be determined" >&2
-+ { (exit 1); exit 1; }; }
-+test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
-+ { echo "$as_me: error: pwd does not report name of working directory" >&2
-+ { (exit 1); exit 1; }; }
-+
-+
- # Find the source files, if location was not specified.
- if test -z "$srcdir"; then
- ac_srcdir_defaulted=yes
-- # Try the directory containing this script, then its parent.
-- ac_confdir=`(dirname "$0") 2>/dev/null ||
-+ # Try the directory containing this script, then the parent directory.
-+ ac_confdir=`$as_dirname -- "$0" ||
- $as_expr X"$0" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$0" : 'X\(//\)[^/]' \| \
- X"$0" : 'X\(//\)$' \| \
-- X"$0" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
-+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
- echo X"$0" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)[^/].*/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\).*/{
-+ s//\1/
-+ q
-+ }
- s/.*/./; q'`
- srcdir=$ac_confdir
-- if test ! -r $srcdir/$ac_unique_file; then
-+ if test ! -r "$srcdir/$ac_unique_file"; then
- srcdir=..
- fi
- else
- ac_srcdir_defaulted=no
- fi
--if test ! -r $srcdir/$ac_unique_file; then
-- if test "$ac_srcdir_defaulted" = yes; then
-- { echo "$as_me: error: cannot find sources ($ac_unique_file) in $ac_confdir or .." >&2
-- { (exit 1); exit 1; }; }
-- else
-+if test ! -r "$srcdir/$ac_unique_file"; then
-+ test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
- { echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
- { (exit 1); exit 1; }; }
- fi
-+ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
-+ac_abs_confdir=`(
-+ cd "$srcdir" && test -r "./$ac_unique_file" || { echo "$as_me: error: $ac_msg" >&2
-+ { (exit 1); exit 1; }; }
-+ pwd)`
-+# When building in place, set srcdir=.
-+if test "$ac_abs_confdir" = "$ac_pwd"; then
-+ srcdir=.
-+fi
-+# Remove unnecessary trailing slashes from srcdir.
-+# Double slashes in file names in object file debugging info
-+# mess up M-x gdb in Emacs.
-+case $srcdir in
-+*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
-+esac
-+
-+
-+#### Check the passed arguments against the list of available ones
-+x_with_list="\
-+debug max-debug symbols optimization profiling tcheck dll static static-exe \
-+plugin-auto-load bundles bin-release mt 64 universal exe runpath hard-runpath \
-+lfs limited-linker openmp \
-+autodep suffix hostspec version execopy bincopy lib-rebuilds lib-rebuilds=ask \
-+deactivation makefile-auto-update projects flat-makefile configure-dialog \
-+check ncbi-public strip pch caution ccache distcc \
-+ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
-+geo included-geo \
-+z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
-+ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
-+bdb python perl jni sqlite3 icu boost boost-tag \
-+sp expat sablot libxml libxslt libexslt xerces xalan zorba \
-+oechem sge muparser hdf5 \
-+gif jpeg tiff png xpm magic curl mimetic gsoap mongodb 3psw \
-+local-lbsm ncbi-crypt connext \
-+serial objects dbapi app ctools gui algo internal gbench"
-+
-+x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-+
-+
-+for x_arg in "$@" ; do
-+ if test -z "$x_arg" ; then
-+ continue
-+ fi
-+
-+ x_okay=
-+ for x_desc in $x_with_list ; do
-+ if test "$x_arg" = "$x_desc" ; then
-+ x_okay="okay"
-+ break
-+ fi
-+ done
-+ if test "$x_okay" = "okay" ; then
-+ continue
- fi
--(cd $srcdir && test -r ./$ac_unique_file) 2>/dev/null ||
-- { echo "$as_me: error: sources are in $srcdir, but \`cd $srcdir' does not work" >&2
-+
-+ case "$x_arg" in
-+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
-+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
-+ { echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2
-+ { (exit 1); exit 1; }; }
-+ ;;
-+
-+ --with-extra-action=* | --with-build-root=* | --with-build-root-sfx=* \
-+ | --with-fake-root=* | --with-saved-settings=* \
-+ | --with-projects=* | --with-check=* | --with-check-tools=* \
-+ | --with-universal=* | --with-tcheck=* \
-+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
-+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-+ | [A-Z]*=* \
-+ | --with-z=* | --with-bz2=* | --with-lzo=* \
-+ | --with-pcre=* | --with-ncbi-c=* | --with-sss=* \
-+ | --with-gcrypt=* | --with-gnutls=* | --with-openssl=* \
-+ | --with-krb5=* | --with-curl=* | --with-gsoap=* | --with-mongodb=* \
-+ | --with-sybase-local=* | --with-wxwidgets=* | --with-mimetic=* \
-+ | --with-ftds=* | --with-mysql=* | --with-fastcgi=* \
-+ | --with-sqlite3=* | --with-expat=* | --with-sablot=* \
-+ | --with-icu=* | --with-xerces=* | --with-xalan=* | --with-zorba=* \
-+ | --with-libxml=* | --with-libxslt=* | --with-exslt=* \
-+ | --with-bdb=* | --with-odbc=* | --with-python=* | --with-perl=* \
-+ | --with-freetype=* | --with-ftgl=* | --with-gif=* | --with-jpeg=* \
-+ | --with-png=* | --with-tiff=* | --with-xpm=* | --with-opengl=* \
-+ | --with-mesa=* | --with-glut=* | --with-glew=* | --with-oechem=* \
-+ | --with-boost=* | --with-boost-tag=* | --with-orbacus=* | --with-sge=* \
-+ | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
-+ | --x-includes=* | --x-libraries=* | --with-3psw=* \
-+ | --target=* | --with-runpath=* | --with-relative-runpath=* \
-+ | --help | --no-create | --no-recursion)
-+ ;;
-+
-+ * )
-+ { echo "$as_me: error: $x_arg: unknown option; use --help to show usage" >&2
- { (exit 1); exit 1; }; }
--srcdir=`echo "$srcdir" | sed 's%\([^\\/]\)[\\/]*$%\1%'`
--ac_env_build_alias_set=${build_alias+set}
--ac_env_build_alias_value=$build_alias
--ac_cv_env_build_alias_set=${build_alias+set}
--ac_cv_env_build_alias_value=$build_alias
--ac_env_host_alias_set=${host_alias+set}
--ac_env_host_alias_value=$host_alias
--ac_cv_env_host_alias_set=${host_alias+set}
--ac_cv_env_host_alias_value=$host_alias
--ac_env_target_alias_set=${target_alias+set}
--ac_env_target_alias_value=$target_alias
--ac_cv_env_target_alias_set=${target_alias+set}
--ac_cv_env_target_alias_value=$target_alias
--ac_env_CC_set=${CC+set}
--ac_env_CC_value=$CC
--ac_cv_env_CC_set=${CC+set}
--ac_cv_env_CC_value=$CC
--ac_env_CFLAGS_set=${CFLAGS+set}
--ac_env_CFLAGS_value=$CFLAGS
--ac_cv_env_CFLAGS_set=${CFLAGS+set}
--ac_cv_env_CFLAGS_value=$CFLAGS
--ac_env_LDFLAGS_set=${LDFLAGS+set}
--ac_env_LDFLAGS_value=$LDFLAGS
--ac_cv_env_LDFLAGS_set=${LDFLAGS+set}
--ac_cv_env_LDFLAGS_value=$LDFLAGS
--ac_env_CPPFLAGS_set=${CPPFLAGS+set}
--ac_env_CPPFLAGS_value=$CPPFLAGS
--ac_cv_env_CPPFLAGS_set=${CPPFLAGS+set}
--ac_cv_env_CPPFLAGS_value=$CPPFLAGS
--ac_env_CXX_set=${CXX+set}
--ac_env_CXX_value=$CXX
--ac_cv_env_CXX_set=${CXX+set}
--ac_cv_env_CXX_value=$CXX
--ac_env_CXXFLAGS_set=${CXXFLAGS+set}
--ac_env_CXXFLAGS_value=$CXXFLAGS
--ac_cv_env_CXXFLAGS_set=${CXXFLAGS+set}
--ac_cv_env_CXXFLAGS_value=$CXXFLAGS
--ac_env_CXXCPP_set=${CXXCPP+set}
--ac_env_CXXCPP_value=$CXXCPP
--ac_cv_env_CXXCPP_set=${CXXCPP+set}
--ac_cv_env_CXXCPP_value=$CXXCPP
--ac_env_CPP_set=${CPP+set}
--ac_env_CPP_value=$CPP
--ac_cv_env_CPP_set=${CPP+set}
--ac_cv_env_CPP_value=$CPP
-+ ;;
-+ esac
-+done
-+
-+for ac_var in $ac_precious_vars; do
-+ eval ac_env_${ac_var}_set=\${${ac_var}+set}
-+ eval ac_env_${ac_var}_value=\$${ac_var}
-+ eval ac_cv_env_${ac_var}_set=\${${ac_var}+set}
-+ eval ac_cv_env_${ac_var}_value=\$${ac_var}
-+done
-
- #
- # Report the --help message.
-@@ -822,9 +1638,6 @@
- -n, --no-create do not create output files
- --srcdir=DIR find the sources in DIR [configure dir or \`..']
-
--_ACEOF
--
-- cat <<_ACEOF
- Installation directories:
- --prefix=PREFIX install architecture-independent files in PREFIX
- [$ac_default_prefix]
-@@ -842,15 +1655,22 @@
- --bindir=DIR user executables [EPREFIX/bin]
- --sbindir=DIR system admin executables [EPREFIX/sbin]
- --libexecdir=DIR program executables [EPREFIX/libexec]
-- --datadir=DIR read-only architecture-independent data [PREFIX/share]
- --sysconfdir=DIR read-only single-machine data [PREFIX/etc]
- --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]
- --localstatedir=DIR modifiable single-machine data [PREFIX/var]
- --libdir=DIR object code libraries [EPREFIX/lib]
- --includedir=DIR C header files [PREFIX/include]
- --oldincludedir=DIR C header files for non-gcc [/usr/include]
-- --infodir=DIR info documentation [PREFIX/info]
-- --mandir=DIR man documentation [PREFIX/man]
-+ --datarootdir=DIR read-only arch.-independent data root [PREFIX/share]
-+ --datadir=DIR read-only architecture-independent data [DATAROOTDIR]
-+ --infodir=DIR info documentation [DATAROOTDIR/info]
-+ --localedir=DIR locale-dependent data [DATAROOTDIR/locale]
-+ --mandir=DIR man documentation [DATAROOTDIR/man]
-+ --docdir=DIR documentation root [DATAROOTDIR/doc/ncbi-tools--]
-+ --htmldir=DIR html documentation [DOCDIR]
-+ --dvidir=DIR dvi documentation [DOCDIR]
-+ --pdfdir=DIR pdf documentation [DOCDIR]
-+ --psdir=DIR ps documentation [DOCDIR]
- _ACEOF
-
- cat <<\_ACEOF
-@@ -889,6 +1709,7 @@
- --with-bundles build bundles in addition to dylibs on Mac OS X
- --with-bin-release build executables suitable for public release
- --with-mt compile in a MultiThread-safe manner
-+ --with-openmp enable OpenMP extensions for all projects
- --with-64 compile to 64-bit code
- --with-universal build universal binaries on Mac OS X
- --with-universal=CPUs build universal binaries targeting the given CPUs
-@@ -925,7 +1746,9 @@
- --without-caution proceed without asking when in doubt
- --without-ccache do not automatically use ccache if available
- --without-distcc do not automatically use distcc if available
-+ --with-ncbi-c=DIR use NCBI C Toolkit installation in DIR
- --without-ncbi-c do not use NCBI C Toolkit
-+ --with-sss=DIR use NCBI SSS installation in DIR
- --without-sss do not use NCBI SSS libraries
- --without-utils do not use NCBI SSS UTIL library
- --without-sssdb do not use NCBI SSS DB library
-@@ -1034,6 +1857,10 @@
- --without-curl do not use libcurl
- --with-mimetic=DIR use libmimetic installation in DIR
- --without-mimetic do not use libmimetic
-+ --with-gsoap=DIR use gSOAP++ installation in DIR
-+ --without-gsoap do not use gSOAP++
-+ --with-mongodb=DIR use MongoDB installation in DIR
-+ --without-mongodb do not use MongoDB
- --with-3psw=std:netopt favor standard (system) builds of the above pkgs.
- --without-3psw do not use any of the above packages
- --without-local-lbsm turn off support for IPC with locally running LBSMD
-@@ -1058,87 +1885,90 @@
- CFLAGS C compiler flags
- LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a
- nonstandard directory <lib dir>
-- CPPFLAGS C/C++ preprocessor flags, e.g. -I<include dir> if you have
-- headers in a nonstandard directory <include dir>
-+ CPPFLAGS C/C++/Objective C preprocessor flags, e.g. -I<include dir> if
-+ you have headers in a nonstandard directory <include dir>
- CXX C++ compiler command
- CXXFLAGS C++ compiler flags
- CXXCPP C++ preprocessor
- CPP C preprocessor
-+ XMKMF Path to xmkmf, Makefile generator for X Window System
-
- Use these variables to override the choices made by `configure' or to help
- it to find libraries and programs with nonstandard names/locations.
-
- Report bugs to <cpp-core@ncbi.nlm.nih.gov>.
- _ACEOF
-+ac_status=$?
- fi
-
- if test "$ac_init_help" = "recursive"; then
- # If there are subdirs, report their specific --help.
-- ac_popdir=`pwd`
- for ac_dir in : $ac_subdirs_all; do test "x$ac_dir" = x: && continue
-- test -d $ac_dir || continue
-- #ac_builddir=. # Useless!
--ac_builddir=$builddir
--if test -n "$ac_file_in"; then
-- ac_dir_in=`(dirname "$ac_file_in") 2>/dev/null ||
--$as_expr X"$ac_file_in" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-- X"$ac_file_in" : 'X\(//\)[^/]' \| \
-- X"$ac_file_in" : 'X\(//\)$' \| \
-- X"$ac_file_in" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X"$ac_file_in" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-+ test -d "$ac_dir" || continue
-+ # Base source directories on path to *input* file.
-+if test -n "$ac_f"; then
-+ ac_dir_in=`$as_dirname -- "$ac_f" ||
-+$as_expr X"$ac_f" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-+ X"$ac_f" : 'X\(//\)[^/]' \| \
-+ X"$ac_f" : 'X\(//\)$' \| \
-+ X"$ac_f" : 'X\(/\)' \| . 2>/dev/null ||
-+echo X"$ac_f" |
-+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)[^/].*/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\).*/{
-+ s//\1/
-+ q
-+ }
- s/.*/./; q'`
- else
- ac_dir_in="$ac_dir"
- fi
-
--if test $ac_dir_in != .; then
-- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[\\/],,'`
-- # A "../" for each directory in $ac_dir_suffix.
-- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
--else
-- ac_dir_suffix= ac_top_builddir=
--fi
-+ac_builddir=.
-
--case $srcdir in
-- .) # No --srcdir option. We are building in place.
-- ac_srcdir=.
-- if test -z "$ac_top_builddir"; then
-- ac_top_srcdir=.
-- else
-- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
-- fi ;;
-- [\\/]* | ?:[\\/]* ) # Absolute path.
-- ac_srcdir=$srcdir/$ac_dir_suffix;
-- ac_top_srcdir=$srcdir ;;
-- *) # Relative path.
-- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
-- ac_top_srcdir=$ac_top_builddir$srcdir ;;
--esac
--# Do not use `cd foo && pwd` to compute absolute paths, because
--# the directories may not exist.
--case $builddir in
--.) ac_abs_builddir="$ac_dir";;
--*)
-- case "$ac_dir" in
-- .) ac_abs_builddir=$builddir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
-- *) ac_abs_builddir=$builddir/"$ac_dir";;
-- esac;;
--esac
--case $ac_abs_builddir in
--.) ac_abs_top_builddir=${ac_top_builddir}.;;
-+case "$ac_dir_in" in
-+.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
- *)
-- case ${ac_top_builddir}. in
-- .) ac_abs_top_builddir=$ac_abs_builddir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
-- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
-+ ac_dir_suffix=/`echo "$ac_dir_in" | sed 's,^\.[\\/],,'`
-+ # A ".." for each directory in $ac_dir_suffix.
-+ ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
-+ case $ac_top_builddir_sub in
-+ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
-+ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
- esac;;
- esac
-+ac_abs_top_builddir=$ac_pwd
-+ac_abs_builddir=$ac_pwd$ac_dir_suffix
-+# for backward compatibility:
-+ac_top_builddir=$ac_top_build_prefix
-+
-+case $srcdir in
-+ .) # We are building in place.
-+ ac_srcdir=.
-+ ac_top_srcdir=$ac_top_builddir_sub
-+ ac_abs_top_srcdir=$ac_pwd ;;
-+ [\\/]* | ?:[\\/]* ) # Absolute name.
-+ ac_srcdir=$srcdir$ac_dir_suffix;
-+ ac_top_srcdir=$srcdir
-+ ac_abs_top_srcdir=$srcdir ;;
-+ *) # Relative name.
-+ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
-+ ac_top_srcdir=$ac_top_build_prefix$srcdir
-+ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
-+esac
-+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
-+
-+
- case $ac_dir_in in
- .) ac_abs_top_srcdir=$real_srcdir;;
- *)
-@@ -1148,46 +1978,35 @@
- *) ac_abs_top_srcdir=$ac_dir_in/$real_srcdir;;
- esac;;
- esac
--case $ac_abs_top_srcdir in
--.) ac_abs_srcdir=$ac_dir_suffix;;
--*)
-- case $ac_dir_suffix in
-- .) ac_abs_srcdir=$ac_abs_top_srcdir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_dir_suffix;;
-- *) ac_abs_srcdir=$ac_abs_top_srcdir/$ac_dir_suffix;;
-- esac;;
--esac
-+ac_builddir=$builddir
-
-- cd $ac_dir
-- # Check for guested configure; otherwise get Cygnus style configure.
-- if test -f $ac_srcdir/configure.gnu; then
-- echo
-- $SHELL $ac_srcdir/configure.gnu --help=recursive
-- elif test -f $ac_srcdir/configure; then
-- echo
-- $SHELL $ac_srcdir/configure --help=recursive
-- elif test -f $ac_srcdir/configure.ac ||
-- test -f $ac_srcdir/configure.in; then
-- echo
-- $ac_configure --help
-+ cd "$ac_dir" || { ac_status=$?; continue; }
-+ # Check for guested configure.
-+ if test -f "$ac_srcdir/configure.gnu"; then
-+ echo &&
-+ $SHELL "$ac_srcdir/configure.gnu" --help=recursive
-+ elif test -f "$ac_srcdir/configure"; then
-+ echo &&
-+ $SHELL "$ac_srcdir/configure" --help=recursive
- else
- echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
-- fi
-- cd $ac_popdir
-+ fi || ac_status=$?
-+ cd "$ac_pwd" || { ac_status=$?; break; }
- done
- fi
-
--test -n "$ac_init_help" && exit 0
-+test -n "$ac_init_help" && exit $ac_status
- if $ac_init_version; then
- cat <<\_ACEOF
- ncbi-tools++ configure 0.0
--generated by GNU Autoconf 2.59
-+generated by GNU Autoconf 2.60
-
--Copyright (C) 2003 Free Software Foundation, Inc.
-+Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
-+2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
- This configure script is free software; the Free Software Foundation
- gives unlimited permission to copy, distribute and modify it.
- _ACEOF
-- exit 0
-+ exit
- fi
-
-
-@@ -1522,6 +2341,18 @@
- else
- with_curl=no
- fi
-+ if test "${with_gsoap-no}" != "no"; then
-+ { echo "$as_me: error: incompatible options: --with-gsoap but --without-3psw" >&2
-+ { (exit 1); exit 1; }; }
-+ else
-+ with_gsoap=no
-+ fi
-+ if test "${with_mongodb-no}" != "no"; then
-+ { echo "$as_me: error: incompatible options: --with-mongodb but --without-3psw" >&2
-+ { (exit 1); exit 1; }; }
-+ else
-+ with_mongodb=no
-+ fi
-
- $as_unset NCBI || test "${NCBI+set}" != set || { NCBI=; export NCBI; }
- ;;
-@@ -1542,17 +2373,17 @@
- if test -z "$CONFIG_SITE" -a -r $srcdir/src/build-system/config.site; then
- CONFIG_SITE=$srcdir/src/build-system/config.site
- fi
--exec 5>config.log
--cat >&5 <<_ACEOF
-+cat >config.log <<_ACEOF
- This file contains any messages produced by compilers while
- running configure, to aid debugging if configure makes a mistake.
-
- It was created by ncbi-tools++ $as_me 0.0, which was
--generated by GNU Autoconf 2.59. Invocation command line was
-+generated by GNU Autoconf 2.60. Invocation command line was
-
- $ $0 $@
-
- _ACEOF
-+exec 5>>config.log
- {
- cat <<_ASUNAME
- ## --------- ##
-@@ -1571,7 +2402,7 @@
- /bin/arch = `(/bin/arch) 2>/dev/null || echo unknown`
- /usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown`
- /usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
--hostinfo = `(hostinfo) 2>/dev/null || echo unknown`
-+/usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown`
- /bin/machine = `(/bin/machine) 2>/dev/null || echo unknown`
- /usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown`
- /bin/universe = `(/bin/universe) 2>/dev/null || echo unknown`
-@@ -1585,6 +2416,7 @@
- test -z "$as_dir" && as_dir=.
- echo "PATH: $as_dir"
- done
-+IFS=$as_save_IFS
-
- } >&5
-
-@@ -1606,7 +2438,6 @@
- ac_configure_args=
- ac_configure_args0=
- ac_configure_args1=
--ac_sep=
- ac_must_keep_next=false
- for ac_pass in 1 2
- do
-@@ -1617,7 +2448,7 @@
- -q | -quiet | --quiet | --quie | --qui | --qu | --q \
- | -silent | --silent | --silen | --sile | --sil)
- continue ;;
-- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
-+ *\'*)
- ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
- esac
- case $ac_pass in
-@@ -1639,9 +2470,7 @@
- -* ) ac_must_keep_next=true ;;
- esac
- fi
-- ac_configure_args="$ac_configure_args$ac_sep'$ac_arg'"
-- # Get rid of the leading space.
-- ac_sep=" "
-+ ac_configure_args="$ac_configure_args '$ac_arg'"
- ;;
- esac
- done
-@@ -1652,8 +2481,8 @@
- # When interrupted or exit'd, cleanup temporary files, and complete
- # config.log. We remove comments because anyway the quotes in there
- # would cause problems or look ugly.
--# WARNING: Be sure not to use single quotes in there, as some shells,
--# such as our DU 5.0 friend, will then `close' the trap.
-+# WARNING: Use '\'' to represent an apostrophe within the trap.
-+# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
- trap 'exit_status=$?
- # Save into config.log some information that might help in debugging.
- {
-@@ -1666,20 +2495,34 @@
- _ASBOX
- echo
- # The following way of writing the cache mishandles newlines in values,
--{
-+(
-+ for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do
-+ eval ac_val=\$$ac_var
-+ case $ac_val in #(
-+ *${as_nl}*)
-+ case $ac_var in #(
-+ *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
-+echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
-+ esac
-+ case $ac_var in #(
-+ _ | IFS | as_nl) ;; #(
-+ *) $as_unset $ac_var ;;
-+ esac ;;
-+ esac
-+ done
- (set) 2>&1 |
-- case `(ac_space='"'"' '"'"'; set | grep ac_space) 2>&1` in
-- *ac_space=\ *)
-- sed -n \
-- "s/'"'"'/'"'"'\\\\'"'"''"'"'/g;
-- s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='"'"'\\2'"'"'/p"
-- ;;
-- *)
-+ case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
-+ *${as_nl}ac_space=\ *)
- sed -n \
-- "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
-- ;;
-- esac;
--}
-+ "s/'\''/'\''\\\\'\'''\''/g;
-+ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
-+ ;; #(
-+ *)
-+ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
-+ ;;
-+ esac |
-+ sort
-+)
- echo
-
- cat <<\_ASBOX
-@@ -1690,22 +2533,28 @@
- echo
- for ac_var in $ac_subst_vars
- do
-- eval ac_val=$`echo $ac_var`
-- echo "$ac_var='"'"'$ac_val'"'"'"
-+ eval ac_val=\$$ac_var
-+ case $ac_val in
-+ *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
-+ esac
-+ echo "$ac_var='\''$ac_val'\''"
- done | sort
- echo
-
- if test -n "$ac_subst_files"; then
- cat <<\_ASBOX
--## ------------- ##
--## Output files. ##
--## ------------- ##
-+## ------------------- ##
-+## File substitutions. ##
-+## ------------------- ##
- _ASBOX
- echo
- for ac_var in $ac_subst_files
- do
-- eval ac_val=$`echo $ac_var`
-- echo "$ac_var='"'"'$ac_val'"'"'"
-+ eval ac_val=\$$ac_var
-+ case $ac_val in
-+ *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
-+ esac
-+ echo "$ac_var='\''$ac_val'\''"
- done | sort
- echo
- fi
-@@ -1717,15 +2566,15 @@
- ## ----------- ##
- _ASBOX
- echo
-- sed "/^$/d" confdefs.h | sort
-+ cat confdefs.h
- echo
- fi
- test "$ac_signal" != 0 &&
- echo "$as_me: caught signal $ac_signal"
- echo "$as_me: exit $exit_status"
- } >&5
-- rm -f core *.core &&
-- rm -rf conftest* confdefs* conf$$* $ac_clean_files &&
-+ rm -f core *.core core.conftest.* &&
-+ rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
- exit $exit_status
- ' 0
- for ac_signal in 1 2 13 15; do
-@@ -1734,9 +2583,7 @@
- ac_signal=0
-
- # confdefs.h avoids OS command line length limits that DEFS can exceed.
--rm -rf conftest* confdefs.h
--# AIX cpp loses on an empty file, so make sure it contains at least a newline.
--echo >confdefs.h
-+rm -f -r conftest* confdefs.h
-
- # Predefined preprocessor variables.
-
-@@ -1747,14 +2594,17 @@
-
- # Let the site file select an alternate cache file if it wants to.
- # Prefer explicitly selected file to automatically selected ones.
--if test -z "$CONFIG_SITE"; then
-- if test "x$prefix" != xNONE; then
-- CONFIG_SITE="$prefix/share/config.site $prefix/etc/config.site"
-+if test -n "$CONFIG_SITE"; then
-+ set x "$CONFIG_SITE"
-+elif test "x$prefix" != xNONE; then
-+ set x "$prefix/share/config.site" "$prefix/etc/config.site"
- else
-- CONFIG_SITE="$ac_default_prefix/share/config.site $ac_default_prefix/etc/config.site"
-- fi
-+ set x "$ac_default_prefix/share/config.site" \
-+ "$ac_default_prefix/etc/config.site"
- fi
--for ac_site_file in $CONFIG_SITE; do
-+shift
-+for ac_site_file
-+do
- if test -r "$ac_site_file"; then
- { echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
- echo "$as_me: loading site script $ac_site_file" >&6;}
-@@ -1770,8 +2620,8 @@
- { echo "$as_me:$LINENO: loading cache $cache_file" >&5
- echo "$as_me: loading cache $cache_file" >&6;}
- case $cache_file in
-- [\\/]* | ?:[\\/]* ) . $cache_file;;
-- *) . ./$cache_file;;
-+ [\\/]* | ?:[\\/]* ) . "$cache_file";;
-+ *) . "./$cache_file";;
- esac
- fi
- else
-@@ -1783,12 +2633,11 @@
- # Check that the precious variables saved in the cache have kept the same
- # value.
- ac_cache_corrupted=false
--for ac_var in `(set) 2>&1 |
-- sed -n 's/^ac_env_\([a-zA-Z_0-9]*\)_set=.*/\1/p'`; do
-+for ac_var in $ac_precious_vars; do
- eval ac_old_set=\$ac_cv_env_${ac_var}_set
- eval ac_new_set=\$ac_env_${ac_var}_set
-- eval ac_old_val="\$ac_cv_env_${ac_var}_value"
-- eval ac_new_val="\$ac_env_${ac_var}_value"
-+ eval ac_old_val=\$ac_cv_env_${ac_var}_value
-+ eval ac_new_val=\$ac_env_${ac_var}_value
- case $ac_old_set,$ac_new_set in
- set,)
- { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
-@@ -1813,8 +2662,7 @@
- # Pass precious variables to config.status.
- if test "$ac_new_set" = set; then
- case $ac_new_val in
-- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
-- ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
-+ *\'*) ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
- *) ac_arg=$ac_var=$ac_new_val ;;
- esac
- case " $ac_configure_args " in
-@@ -1831,12 +2679,6 @@
- { (exit 1); exit 1; }; }
- fi
-
--ac_ext=c
--ac_cpp='$CPP $CPPFLAGS'
--ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
--ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
--ac_compiler_gnu=$ac_cv_c_compiler_gnu
--
-
-
-
-@@ -1861,6 +2703,11 @@
-
-
-
-+ac_ext=c
-+ac_cpp='$CPP $CPPFLAGS'
-+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-+ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-
-@@ -1874,1167 +2721,1129 @@
-
- ## Title
-
--# Check whether --with-title0 or --without-title0 was given.
-+# Check whether --with-title0 was given.
- if test "${with_title0+set}" = set; then
-- withval="$with_title0"
-+ withval=$with_title0;
-+fi
-
--fi;
-
--# Check whether --with-title1 or --without-title1 was given.
-+# Check whether --with-title1 was given.
- if test "${with_title1+set}" = set; then
-- withval="$with_title1"
-+ withval=$with_title1;
-+fi
-
--fi;
-
--# Check whether --with-title2 or --without-title2 was given.
-+# Check whether --with-title2 was given.
- if test "${with_title2+set}" = set; then
-- withval="$with_title2"
-+ withval=$with_title2;
-+fi
-
--fi;
-
- ## Code generation
-
--# Check whether --with-debug or --without-debug was given.
-+# Check whether --with-debug was given.
- if test "${with_debug+set}" = set; then
-- withval="$with_debug"
-+ withval=$with_debug;
-+fi
-
--fi;
-
--# Check whether --with-max-debug or --without-max-debug was given.
-+# Check whether --with-max-debug was given.
- if test "${with_max_debug+set}" = set; then
-- withval="$with_max_debug"
-+ withval=$with_max_debug;
-+fi
-
--fi;
-
--# Check whether --with-symbols or --without-symbols was given.
-+# Check whether --with-symbols was given.
- if test "${with_symbols+set}" = set; then
-- withval="$with_symbols"
-+ withval=$with_symbols;
-+fi
-
--fi;
-
--# Check whether --with-optimization or --without-optimization was given.
-+# Check whether --with-optimization was given.
- if test "${with_optimization+set}" = set; then
-- withval="$with_optimization"
-+ withval=$with_optimization;
-+fi
-
--fi;
-
--# Check whether --with-profiling or --without-profiling was given.
-+# Check whether --with-profiling was given.
- if test "${with_profiling+set}" = set; then
-- withval="$with_profiling"
-+ withval=$with_profiling;
-+fi
-
--fi;
-
--# Check whether --with-tcheck or --without-tcheck was given.
-+# Check whether --with-tcheck was given.
- if test "${with_tcheck+set}" = set; then
-- withval="$with_tcheck"
-+ withval=$with_tcheck;
-+fi
-
--fi;
-
--# Check whether --with-dll or --without-dll was given.
-+# Check whether --with-dll was given.
- if test "${with_dll+set}" = set; then
-- withval="$with_dll"
-+ withval=$with_dll;
-+fi
-
--fi;
-
--# Check whether --with-static or --without-static was given.
-+# Check whether --with-static was given.
- if test "${with_static+set}" = set; then
-- withval="$with_static"
-+ withval=$with_static;
-+fi
-
--fi;
-
--# Check whether --with-static-exe or --without-static-exe was given.
-+# Check whether --with-static-exe was given.
- if test "${with_static_exe+set}" = set; then
-- withval="$with_static_exe"
-+ withval=$with_static_exe;
-+fi
-
--fi;
-
--# Check whether --with-plugin-auto-load or --without-plugin-auto-load was given.
-+# Check whether --with-plugin-auto-load was given.
- if test "${with_plugin_auto_load+set}" = set; then
-- withval="$with_plugin_auto_load"
-+ withval=$with_plugin_auto_load;
-+fi
-
--fi;
-
--# Check whether --with-bundles or --without-bundles was given.
-+# Check whether --with-bundles was given.
- if test "${with_bundles+set}" = set; then
-- withval="$with_bundles"
-+ withval=$with_bundles;
-+fi
-
--fi;
-
--# Check whether --with-bin-release or --without-bin-release was given.
-+# Check whether --with-bin-release was given.
- if test "${with_bin_release+set}" = set; then
-- withval="$with_bin_release"
-+ withval=$with_bin_release;
-+fi
-
--fi;
-
--# Check whether --with-mt or --without-mt was given.
-+# Check whether --with-mt was given.
- if test "${with_mt+set}" = set; then
-- withval="$with_mt"
-+ withval=$with_mt;
-+fi
-+
-+
-+# Check whether --with-openmp was given.
-+if test "${with_openmp+set}" = set; then
-+ withval=$with_openmp;
-+fi
-
--fi;
-
--# Check whether --with-64 or --without-64 was given.
-+# Check whether --with-64 was given.
- if test "${with_64+set}" = set; then
-- withval="$with_64"
-+ withval=$with_64;
-+fi
-
--fi;
-
--# Check whether --with-universal or --without-universal was given.
-+# Check whether --with-universal was given.
- if test "${with_universal+set}" = set; then
-- withval="$with_universal"
-+ withval=$with_universal;
-+fi
-
--fi;
-
--# Check whether --with-universal2 or --without-universal2 was given.
-+# Check whether --with-universal2 was given.
- if test "${with_universal2+set}" = set; then
-- withval="$with_universal2"
-+ withval=$with_universal2;
-+fi
-
--fi;
-
--# Check whether --with-exe or --without-exe was given.
-+# Check whether --with-exe was given.
- if test "${with_exe+set}" = set; then
-- withval="$with_exe"
-+ withval=$with_exe;
-+fi
-
--fi;
-
--# Check whether --with-runpath or --without-runpath was given.
-+# Check whether --with-runpath was given.
- if test "${with_runpath+set}" = set; then
-- withval="$with_runpath"
-+ withval=$with_runpath;
-+fi
-
--fi;
-
--# Check whether --with-relative-runpath or --without-relative-runpath was given.
-+# Check whether --with-relative-runpath was given.
- if test "${with_relative_runpath+set}" = set; then
-- withval="$with_relative_runpath"
-+ withval=$with_relative_runpath;
-+fi
-
--fi;
-
--# Check whether --with-hard-runpath or --without-hard-runpath was given.
-+# Check whether --with-hard-runpath was given.
- if test "${with_hard_runpath+set}" = set; then
-- withval="$with_hard_runpath"
-+ withval=$with_hard_runpath;
-+fi
-
--fi;
-
--# Check whether --with-lfs or --without-lfs was given.
-+# Check whether --with-lfs was given.
- if test "${with_lfs+set}" = set; then
-- withval="$with_lfs"
-+ withval=$with_lfs;
-+fi
-
--fi;
-
--# Check whether --with-limited-linker or --without-limited-linker was given.
-+# Check whether --with-limited-linker was given.
- if test "${with_limited_linker+set}" = set; then
-- withval="$with_limited_linker"
-+ withval=$with_limited_linker;
-+fi
-
--fi;
-
- ## Scripts, make features, and directory naming
-
--# Check whether --with-extra-action or --without-extra-action was given.
-+# Check whether --with-extra-action was given.
- if test "${with_extra_action+set}" = set; then
-- withval="$with_extra_action"
-+ withval=$with_extra_action;
-+fi
-
--fi;
-
--# Check whether --with-autodep or --without-autodep was given.
-+# Check whether --with-autodep was given.
- if test "${with_autodep+set}" = set; then
-- withval="$with_autodep"
-+ withval=$with_autodep;
-+fi
-
--fi;
-
--# Check whether --with-build-root or --without-build-root was given.
-+# Check whether --with-build-root was given.
- if test "${with_build_root+set}" = set; then
-- withval="$with_build_root"
-+ withval=$with_build_root;
-+fi
-
--fi;
-
--# Check whether --with-fake-root or --without-fake-root was given.
-+# Check whether --with-fake-root was given.
- if test "${with_fake_root+set}" = set; then
-- withval="$with_fake_root"
-+ withval=$with_fake_root;
-+fi
-
--fi;
-
--# Check whether --with-suffix or --without-suffix was given.
-+# Check whether --with-suffix was given.
- if test "${with_suffix+set}" = set; then
-- withval="$with_suffix"
-+ withval=$with_suffix;
-+fi
-
--fi;
-
--# Check whether --with-hostspec or --without-hostspec was given.
-+# Check whether --with-hostspec was given.
- if test "${with_hostspec+set}" = set; then
-- withval="$with_hostspec"
-+ withval=$with_hostspec;
-+fi
-
--fi;
-
--# Check whether --with-version or --without-version was given.
-+# Check whether --with-version was given.
- if test "${with_version+set}" = set; then
-- withval="$with_version"
-+ withval=$with_version;
-+fi
-
--fi;
-
--# Check whether --with-build-root-sfx or --without-build-root-sfx was given.
-+# Check whether --with-build-root-sfx was given.
- if test "${with_build_root_sfx+set}" = set; then
-- withval="$with_build_root_sfx"
-+ withval=$with_build_root_sfx;
-+fi
-
--fi;
-
--# Check whether --with-execopy or --without-execopy was given.
-+# Check whether --with-execopy was given.
- if test "${with_execopy+set}" = set; then
-- withval="$with_execopy"
-+ withval=$with_execopy;
-+fi
-
--fi;
-
--# Check whether --with-bincopy or --without-bincopy was given.
-+# Check whether --with-bincopy was given.
- if test "${with_bincopy+set}" = set; then
-- withval="$with_bincopy"
-+ withval=$with_bincopy;
-+fi
-
--fi;
-
--# Check whether --with-lib-rebuilds or --without-lib-rebuilds was given.
-+# Check whether --with-lib-rebuilds was given.
- if test "${with_lib_rebuilds+set}" = set; then
-- withval="$with_lib_rebuilds"
-+ withval=$with_lib_rebuilds;
-+fi
-
--fi;
-
--# Check whether --with-lib-rebuilds2 or --without-lib-rebuilds2 was given.
-+# Check whether --with-lib-rebuilds2 was given.
- if test "${with_lib_rebuilds2+set}" = set; then
-- withval="$with_lib_rebuilds2"
-+ withval=$with_lib_rebuilds2;
-+fi
-
--fi;
--# Check whether --with-deactivation or --without-deactivation was given.
-+# Check whether --with-deactivation was given.
- if test "${with_deactivation+set}" = set; then
-- withval="$with_deactivation"
-+ withval=$with_deactivation;
-+fi
-
--fi;
-
--# Check whether --with-makefile-auto-update or --without-makefile-auto-update was given.
-+# Check whether --with-makefile-auto-update was given.
- if test "${with_makefile_auto_update+set}" = set; then
-- withval="$with_makefile_auto_update"
-+ withval=$with_makefile_auto_update;
-+fi
-
--fi;
-
--# Check whether --with-projects or --without-projects was given.
-+# Check whether --with-projects was given.
- if test "${with_projects+set}" = set; then
-- withval="$with_projects"
-+ withval=$with_projects;
-+fi
-
--fi;
-
--# Check whether --with-flat-makefile or --without-flat-makefile was given.
-+# Check whether --with-flat-makefile was given.
- if test "${with_flat_makefile+set}" = set; then
-- withval="$with_flat_makefile"
-+ withval=$with_flat_makefile;
-+fi
-
--fi;
-
--# Check whether --with-configure-dialog or --without-configure-dialog was given.
-+# Check whether --with-configure-dialog was given.
- if test "${with_configure_dialog+set}" = set; then
-- withval="$with_configure_dialog"
-+ withval=$with_configure_dialog;
-+fi
-
--fi;
-
--# Check whether --with-saved-settings or --without-saved-settings was given.
-+# Check whether --with-saved-settings was given.
- if test "${with_saved_settings+set}" = set; then
-- withval="$with_saved_settings"
-+ withval=$with_saved_settings;
-+fi
-
--fi;
-
--# Check whether --with-check or --without-check was given.
-+# Check whether --with-check was given.
- if test "${with_check+set}" = set; then
-- withval="$with_check"
-+ withval=$with_check;
-+fi
-
--fi;
-
--# Check whether --with-check-tools or --without-check-tools was given.
-+# Check whether --with-check-tools was given.
- if test "${with_check_tools+set}" = set; then
-- withval="$with_check_tools"
-+ withval=$with_check_tools;
-+fi
-
--fi;
-
--# Check whether --with-ncbi-public or --without-ncbi-public was given.
-+# Check whether --with-ncbi-public was given.
- if test "${with_ncbi_public+set}" = set; then
-- withval="$with_ncbi_public"
-+ withval=$with_ncbi_public;
-+fi
-
--fi;
-
--# Check whether --with-strip or --without-strip was given.
-+# Check whether --with-strip was given.
- if test "${with_strip+set}" = set; then
-- withval="$with_strip"
-+ withval=$with_strip;
-+fi
-
--fi;
-
--# Check whether --with-pch or --without-pch was given.
-+# Check whether --with-pch was given.
- if test "${with_pch+set}" = set; then
-- withval="$with_pch"
-+ withval=$with_pch;
-+fi
-
--fi;
-
--# Check whether --with-caution or --without-caution was given.
-+# Check whether --with-caution was given.
- if test "${with_caution+set}" = set; then
-- withval="$with_caution"
-+ withval=$with_caution;
-+fi
-
--fi;
-
--# Check whether --with-caution2 or --without-caution2 was given.
-+# Check whether --with-caution2 was given.
- if test "${with_caution2+set}" = set; then
-- withval="$with_caution2"
-+ withval=$with_caution2;
-+fi
-
--fi;
-
--# Check whether --with-ccache or --without-ccache was given.
-+# Check whether --with-ccache was given.
- if test "${with_ccache+set}" = set; then
-- withval="$with_ccache"
-+ withval=$with_ccache;
-+fi
-
--fi;
-
--# Check whether --with-distcc or --without-distcc was given.
-+# Check whether --with-distcc was given.
- if test "${with_distcc+set}" = set; then
-- withval="$with_distcc"
-+ withval=$with_distcc;
-+fi
-
--fi;
-
- ## NCBI packages
-
--# Check whether --with-ncbi-c or --without-ncbi-c was given.
-+# Check whether --with-ncbi-c was given.
- if test "${with_ncbi_c+set}" = set; then
-- withval="$with_ncbi_c"
-+ withval=$with_ncbi_c;
-+fi
-+
-+
-+# Check whether --with-ncbi-c2 was given.
-+if test "${with_ncbi_c2+set}" = set; then
-+ withval=$with_ncbi_c2;
-+fi
-
--fi;
-
--# Check whether --with-sss or --without-sss was given.
-+# Check whether --with-sss was given.
- if test "${with_sss+set}" = set; then
-- withval="$with_sss"
-+ withval=$with_sss;
-+fi
-+
-+
-+# Check whether --with-sss2 was given.
-+if test "${with_sss2+set}" = set; then
-+ withval=$with_sss2;
-+fi
-
--fi;
-
--# Check whether --with-sssutils or --without-sssutils was given.
-+# Check whether --with-sssutils was given.
- if test "${with_sssutils+set}" = set; then
-- withval="$with_sssutils"
-+ withval=$with_sssutils;
-+fi
-
--fi;
-
--# Check whether --with-sssdb or --without-sssdb was given.
-+# Check whether --with-sssdb was given.
- if test "${with_sssdb+set}" = set; then
-- withval="$with_sssdb"
-+ withval=$with_sssdb;
-+fi
-
--fi;
-
--# Check whether --with-included-sss or --without-included-sss was given.
-+# Check whether --with-included-sss was given.
- if test "${with_included_sss+set}" = set; then
-- withval="$with_included_sss"
-+ withval=$with_included_sss;
-+fi
-
--fi;
-
- ## Third-party and system packages
-
--# Check whether --with-z or --without-z was given.
-+# Check whether --with-z was given.
- if test "${with_z+set}" = set; then
-- withval="$with_z"
-+ withval=$with_z;
-+fi
-
--fi;
-
--# Check whether --with-z2 or --without-z2 was given.
-+# Check whether --with-z2 was given.
- if test "${with_z2+set}" = set; then
-- withval="$with_z2"
-+ withval=$with_z2;
-+fi
-
--fi;
-
--# Check whether --with-bz2 or --without-bz2 was given.
-+# Check whether --with-bz2 was given.
- if test "${with_bz2+set}" = set; then
-- withval="$with_bz2"
-+ withval=$with_bz2;
-+fi
-
--fi;
-
--# Check whether --with-bz2b or --without-bz2b was given.
-+# Check whether --with-bz2b was given.
- if test "${with_bz2b+set}" = set; then
-- withval="$with_bz2b"
-+ withval=$with_bz2b;
-+fi
-
--fi;
-
--# Check whether --with-lzo or --without-lzo was given.
-+# Check whether --with-lzo was given.
- if test "${with_lzo+set}" = set; then
-- withval="$with_lzo"
-+ withval=$with_lzo;
-+fi
-
--fi;
-
--# Check whether --with-lzo_ or --without-lzo_ was given.
-+# Check whether --with-lzo_ was given.
- if test "${with_lzo_+set}" = set; then
-- withval="$with_lzo_"
-+ withval=$with_lzo_;
-+fi
-
--fi;
-
--# Check whether --with-pcre or --without-pcre was given.
-+# Check whether --with-pcre was given.
- if test "${with_pcre+set}" = set; then
-- withval="$with_pcre"
-+ withval=$with_pcre;
-+fi
-
--fi;
-
--# Check whether --with-pcre2 or --without-pcre2 was given.
-+# Check whether --with-pcre2 was given.
- if test "${with_pcre2+set}" = set; then
-- withval="$with_pcre2"
-+ withval=$with_pcre2;
-+fi
-
--fi;
-
--# Check whether --with-gcrypt or --without-gcrypt was given.
-+# Check whether --with-gcrypt was given.
- if test "${with_gcrypt+set}" = set; then
-- withval="$with_gcrypt"
-+ withval=$with_gcrypt;
-+fi
-
--fi;
-
--# Check whether --with-gcrypt2 or --without-gcrypt2 was given.
-+# Check whether --with-gcrypt2 was given.
- if test "${with_gcrypt2+set}" = set; then
-- withval="$with_gcrypt2"
-+ withval=$with_gcrypt2;
-+fi
-
--fi;
-
--# Check whether --with-gnutls or --without-gnutls was given.
-+# Check whether --with-gnutls was given.
- if test "${with_gnutls+set}" = set; then
-- withval="$with_gnutls"
-+ withval=$with_gnutls;
-+fi
-
--fi;
-
--# Check whether --with-gnutls2 or --without-gnutls2 was given.
-+# Check whether --with-gnutls2 was given.
- if test "${with_gnutls2+set}" = set; then
-- withval="$with_gnutls2"
-+ withval=$with_gnutls2;
-+fi
-
--fi;
-
--# Check whether --with-openssl or --without-openssl was given.
-+# Check whether --with-openssl was given.
- if test "${with_openssl+set}" = set; then
-- withval="$with_openssl"
-+ withval=$with_openssl;
-+fi
-
--fi;
-
--# Check whether --with-openssl2 or --without-openssl2 was given.
-+# Check whether --with-openssl2 was given.
- if test "${with_openssl2+set}" = set; then
-- withval="$with_openssl2"
-+ withval=$with_openssl2;
-+fi
-
--fi;
-
--# Check whether --with-krb5 or --without-krb5 was given.
-+# Check whether --with-krb5 was given.
- if test "${with_krb5+set}" = set; then
-- withval="$with_krb5"
-+ withval=$with_krb5;
-+fi
-
--fi;
-
--# Check whether --with-krb5b or --without-krb5b was given.
-+# Check whether --with-krb5b was given.
- if test "${with_krb5b+set}" = set; then
-- withval="$with_krb5b"
-+ withval=$with_krb5b;
-+fi
-
--fi;
-
--# Check whether --with-sybase or --without-sybase was given.
-+# Check whether --with-sybase was given.
- if test "${with_sybase+set}" = set; then
-- withval="$with_sybase"
-+ withval=$with_sybase;
-+fi
-
--fi;
-
--# Check whether --with-sybase-local or --without-sybase-local was given.
-+# Check whether --with-sybase-local was given.
- if test "${with_sybase_local+set}" = set; then
-- withval="$with_sybase_local"
-+ withval=$with_sybase_local;
-+fi
-
--fi;
-
--# Check whether --with-sybase-new or --without-sybase-new was given.
-+# Check whether --with-sybase-new was given.
- if test "${with_sybase_new+set}" = set; then
-- withval="$with_sybase_new"
-+ withval=$with_sybase_new;
-+fi
-
--fi;
-
--# Check whether --with-ftds or --without-ftds was given.
-+# Check whether --with-ftds was given.
- if test "${with_ftds+set}" = set; then
-- withval="$with_ftds"
-+ withval=$with_ftds;
-+fi
-
--fi;
-
--# Check whether --with-ftds2 or --without-ftds2 was given.
-+# Check whether --with-ftds2 was given.
- if test "${with_ftds2+set}" = set; then
-- withval="$with_ftds2"
-+ withval=$with_ftds2;
-+fi
-
--fi;
-
--# Check whether --with-ftds-renamed or --without-ftds-renamed was given.
-+# Check whether --with-ftds-renamed was given.
- if test "${with_ftds_renamed+set}" = set; then
-- withval="$with_ftds_renamed"
-+ withval=$with_ftds_renamed;
-+fi
-
--fi;
-
--# Check whether --with-mysql or --without-mysql was given.
-+# Check whether --with-mysql was given.
- if test "${with_mysql+set}" = set; then
-- withval="$with_mysql"
-+ withval=$with_mysql;
-+fi
-
--fi;
-
--# Check whether --with-mysql2 or --without-mysql2 was given.
-+# Check whether --with-mysql2 was given.
- if test "${with_mysql2+set}" = set; then
-- withval="$with_mysql2"
-+ withval=$with_mysql2;
-+fi
-
--fi;
-
--# Check whether --with-opengl or --without-opengl was given.
-+# Check whether --with-opengl was given.
- if test "${with_opengl+set}" = set; then
-- withval="$with_opengl"
-+ withval=$with_opengl;
-+fi
-
--fi;
-
--# Check whether --with-opengl2 or --without-opengl2 was given.
-+# Check whether --with-opengl2 was given.
- if test "${with_opengl2+set}" = set; then
-- withval="$with_opengl2"
-+ withval=$with_opengl2;
-+fi
-
--fi;
-
--# Check whether --with-mesa or --without-mesa was given.
-+# Check whether --with-mesa was given.
- if test "${with_mesa+set}" = set; then
-- withval="$with_mesa"
-+ withval=$with_mesa;
-+fi
-
--fi;
-
--# Check whether --with-mesa2 or --without-mesa2 was given.
-+# Check whether --with-mesa2 was given.
- if test "${with_mesa2+set}" = set; then
-- withval="$with_mesa2"
-+ withval=$with_mesa2;
-+fi
-
--fi;
-
--# Check whether --with-glut or --without-glut was given.
-+# Check whether --with-glut was given.
- if test "${with_glut+set}" = set; then
-- withval="$with_glut"
-+ withval=$with_glut;
-+fi
-
--fi;
-
--# Check whether --with-glut2 or --without-glut2 was given.
-+# Check whether --with-glut2 was given.
- if test "${with_glut2+set}" = set; then
-- withval="$with_glut2"
-+ withval=$with_glut2;
-+fi
-
--fi;
-
--# Check whether --with-glew or --without-glew was given.
-+# Check whether --with-glew was given.
- if test "${with_glew+set}" = set; then
-- withval="$with_glew"
-+ withval=$with_glew;
-+fi
-
--fi;
-
--# Check whether --with-glew2 or --without-glew2 was given.
-+# Check whether --with-glew2 was given.
- if test "${with_glew2+set}" = set; then
-- withval="$with_glew2"
-+ withval=$with_glew2;
-+fi
-
--fi;
-
--# Check whether --with-glew-mx or --without-glew-mx was given.
-+# Check whether --with-glew-mx was given.
- if test "${with_glew_mx+set}" = set; then
-- withval="$with_glew_mx"
-+ withval=$with_glew_mx;
-+fi
-
--fi;
-
--# Check whether --with-wxwidgets or --without-wxwidgets was given.
-+# Check whether --with-wxwidgets was given.
- if test "${with_wxwidgets+set}" = set; then
-- withval="$with_wxwidgets"
-+ withval=$with_wxwidgets;
-+fi
-
--fi;
-
--# Check whether --with-wxwidgets2 or --without-wxwidgets2 was given.
-+# Check whether --with-wxwidgets2 was given.
- if test "${with_wxwidgets2+set}" = set; then
-- withval="$with_wxwidgets2"
-+ withval=$with_wxwidgets2;
-+fi
-
--fi;
-
--# Check whether --with-wxwidgets-ucs or --without-wxwidgets-ucs was given.
-+# Check whether --with-wxwidgets-ucs was given.
- if test "${with_wxwidgets_ucs+set}" = set; then
-- withval="$with_wxwidgets_ucs"
-+ withval=$with_wxwidgets_ucs;
-+fi
-
--fi;
-
--# Check whether --with-wxwidgets-ucs2 or --without-wxwidgets-ucs2 was given.
-+# Check whether --with-wxwidgets-ucs2 was given.
- if test "${with_wxwidgets_ucs2+set}" = set; then
-- withval="$with_wxwidgets_ucs2"
-+ withval=$with_wxwidgets_ucs2;
-+fi
-
--fi;
-
--# Check whether --with-freetype or --without-freetype was given.
-+# Check whether --with-freetype was given.
- if test "${with_freetype+set}" = set; then
-- withval="$with_freetype"
-+ withval=$with_freetype;
-+fi
-
--fi;
-
--# Check whether --with-freetype_ or --without-freetype_ was given.
-+# Check whether --with-freetype_ was given.
- if test "${with_freetype_+set}" = set; then
-- withval="$with_freetype_"
-+ withval=$with_freetype_;
-+fi
-
--fi;
-
--# Check whether --with-ftgl or --without-ftgl was given.
-+# Check whether --with-ftgl was given.
- if test "${with_ftgl+set}" = set; then
-- withval="$with_ftgl"
-+ withval=$with_ftgl;
-+fi
-
--fi;
-
--# Check whether --with-ftgl2 or --without-ftgl2 was given.
-+# Check whether --with-ftgl2 was given.
- if test "${with_ftgl2+set}" = set; then
-- withval="$with_ftgl2"
-+ withval=$with_ftgl2;
-+fi
-
--fi;
-
--# Check whether --with-fastcgi or --without-fastcgi was given.
-+# Check whether --with-fastcgi was given.
- if test "${with_fastcgi+set}" = set; then
-- withval="$with_fastcgi"
-+ withval=$with_fastcgi;
-+fi
-
--fi;
-
--# Check whether --with-fastcgi2 or --without-fastcgi2 was given.
-+# Check whether --with-fastcgi2 was given.
- if test "${with_fastcgi2+set}" = set; then
-- withval="$with_fastcgi2"
-+ withval=$with_fastcgi2;
-+fi
-
--fi;
-
--# Check whether --with-fastcgi3 or --without-fastcgi3 was given.
-+# Check whether --with-fastcgi3 was given.
- if test "${with_fastcgi3+set}" = set; then
-- withval="$with_fastcgi3"
-+ withval=$with_fastcgi3;
-+fi
-
--fi;
-
--# Check whether --with-bdb or --without-bdb was given.
-+# Check whether --with-bdb was given.
- if test "${with_bdb+set}" = set; then
-- withval="$with_bdb"
-+ withval=$with_bdb;
-+fi
-
--fi;
-
--# Check whether --with-bdb or --without-bdb was given.
-+# Check whether --with-bdb was given.
- if test "${with_bdb+set}" = set; then
-- withval="$with_bdb"
-+ withval=$with_bdb;
-+fi
-
--fi;
-
--# Check whether --with-bdb or --without-bdb was given.
-+# Check whether --with-bdb was given.
- if test "${with_bdb+set}" = set; then
-- withval="$with_bdb"
-+ withval=$with_bdb;
-+fi
-
--fi;
-
--# Check whether --with-sp or --without-sp was given.
-+# Check whether --with-sp was given.
- if test "${with_sp+set}" = set; then
-- withval="$with_sp"
-+ withval=$with_sp;
-+fi
-
--fi;
-
--# Check whether --with-orbacus or --without-orbacus was given.
-+# Check whether --with-orbacus was given.
- if test "${with_orbacus+set}" = set; then
-- withval="$with_orbacus"
-+ withval=$with_orbacus;
-+fi
-
--fi;
-
--# Check whether --with-orbacus2 or --without-orbacus2 was given.
-+# Check whether --with-orbacus2 was given.
- if test "${with_orbacus2+set}" = set; then
-- withval="$with_orbacus2"
-+ withval=$with_orbacus2;
-+fi
-
--fi;
-
--# Check whether --with-odbc or --without-odbc was given.
-+# Check whether --with-odbc was given.
- if test "${with_odbc+set}" = set; then
-- withval="$with_odbc"
-+ withval=$with_odbc;
-+fi
-
--fi;
-
--# Check whether --with-python or --without-python was given.
-+# Check whether --with-python was given.
- if test "${with_python+set}" = set; then
-- withval="$with_python"
-+ withval=$with_python;
-+fi
-
--fi;
-
--# Check whether --with-python2 or --without-python2 was given.
-+# Check whether --with-python2 was given.
- if test "${with_python2+set}" = set; then
-- withval="$with_python2"
-+ withval=$with_python2;
-+fi
-
--fi;
-
--# Check whether --with-perl or --without-perl was given.
-+# Check whether --with-perl was given.
- if test "${with_perl+set}" = set; then
-- withval="$with_perl"
-+ withval=$with_perl;
-+fi
-
--fi;
-
--# Check whether --with-perl2 or --without-perl2 was given.
-+# Check whether --with-perl2 was given.
- if test "${with_perl2+set}" = set; then
-- withval="$with_perl2"
-+ withval=$with_perl2;
-+fi
-
--fi;
-
--# Check whether --with-jni or --without-jni was given.
-+# Check whether --with-jni was given.
- if test "${with_jni+set}" = set; then
-- withval="$with_jni"
-+ withval=$with_jni;
-+fi
-
--fi;
-
--# Check whether --with-boost or --without-boost was given.
-+# Check whether --with-boost was given.
- if test "${with_boost+set}" = set; then
-- withval="$with_boost"
-+ withval=$with_boost;
-+fi
-
--fi;
-
--# Check whether --with-boost2 or --without-boost2 was given.
-+# Check whether --with-boost2 was given.
- if test "${with_boost2+set}" = set; then
-- withval="$with_boost2"
-+ withval=$with_boost2;
-+fi
-
--fi;
-
--# Check whether --with-boost-tag or --without-boost-tag was given.
-+# Check whether --with-boost-tag was given.
- if test "${with_boost_tag+set}" = set; then
-- withval="$with_boost_tag"
-+ withval=$with_boost_tag;
-+fi
-
--fi;
-
--# Check whether --with-boost-tag2 or --without-boost-tag2 was given.
-+# Check whether --with-boost-tag2 was given.
- if test "${with_boost_tag2+set}" = set; then
-- withval="$with_boost_tag2"
-+ withval=$with_boost_tag2;
-+fi
-
--fi;
-
--# Check whether --with-sqlite3 or --without-sqlite3 was given.
-+# Check whether --with-sqlite3 was given.
- if test "${with_sqlite3+set}" = set; then
-- withval="$with_sqlite3"
-+ withval=$with_sqlite3;
-+fi
-
--fi;
-
--# Check whether --with-sqlite3b or --without-sqlite3b was given.
-+# Check whether --with-sqlite3b was given.
- if test "${with_sqlite3b+set}" = set; then
-- withval="$with_sqlite3b"
-+ withval=$with_sqlite3b;
-+fi
-
--fi;
-
--# Check whether --with-icu or --without-icu was given.
-+# Check whether --with-icu was given.
- if test "${with_icu+set}" = set; then
-- withval="$with_icu"
-+ withval=$with_icu;
-+fi
-
--fi;
-
--# Check whether --with-icu2 or --without-icu2 was given.
-+# Check whether --with-icu2 was given.
- if test "${with_icu2+set}" = set; then
-- withval="$with_icu2"
-+ withval=$with_icu2;
-+fi
-
--fi;
-
--# Check whether --with-expat or --without-expat was given.
-+# Check whether --with-expat was given.
- if test "${with_expat+set}" = set; then
-- withval="$with_expat"
-+ withval=$with_expat;
-+fi
-
--fi;
-
--# Check whether --with-expat2 or --without-expat2 was given.
-+# Check whether --with-expat2 was given.
- if test "${with_expat2+set}" = set; then
-- withval="$with_expat2"
-+ withval=$with_expat2;
-+fi
-
--fi;
-
--# Check whether --with-sablot or --without-sablot was given.
-+# Check whether --with-sablot was given.
- if test "${with_sablot+set}" = set; then
-- withval="$with_sablot"
-+ withval=$with_sablot;
-+fi
-
--fi;
-
--# Check whether --with-sablot2 or --without-sablot2 was given.
-+# Check whether --with-sablot2 was given.
- if test "${with_sablot2+set}" = set; then
-- withval="$with_sablot2"
-+ withval=$with_sablot2;
-+fi
-
--fi;
-
--# Check whether --with-libxml or --without-libxml was given.
-+# Check whether --with-libxml was given.
- if test "${with_libxml+set}" = set; then
-- withval="$with_libxml"
-+ withval=$with_libxml;
-+fi
-
--fi;
-
--# Check whether --with-libxml_ or --without-libxml_ was given.
-+# Check whether --with-libxml_ was given.
- if test "${with_libxml_+set}" = set; then
-- withval="$with_libxml_"
-+ withval=$with_libxml_;
-+fi
-
--fi;
-
--# Check whether --with-libxslt or --without-libxslt was given.
-+# Check whether --with-libxslt was given.
- if test "${with_libxslt+set}" = set; then
-- withval="$with_libxslt"
-+ withval=$with_libxslt;
-+fi
-
--fi;
-
--# Check whether --with-libxslt2 or --without-libxslt2 was given.
-+# Check whether --with-libxslt2 was given.
- if test "${with_libxslt2+set}" = set; then
-- withval="$with_libxslt2"
-+ withval=$with_libxslt2;
-+fi
-
--fi;
-
--# Check whether --with-libexslt or --without-libexslt was given.
-+# Check whether --with-libexslt was given.
- if test "${with_libexslt+set}" = set; then
-- withval="$with_libexslt"
-+ withval=$with_libexslt;
-+fi
-
--fi;
-
--# Check whether --with-libexslt2 or --without-libexslt2 was given.
-+# Check whether --with-libexslt2 was given.
- if test "${with_libexslt2+set}" = set; then
-- withval="$with_libexslt2"
-+ withval=$with_libexslt2;
-+fi
-
--fi;
-
--# Check whether --with-xerces or --without-xerces was given.
-+# Check whether --with-xerces was given.
- if test "${with_xerces+set}" = set; then
-- withval="$with_xerces"
-+ withval=$with_xerces;
-+fi
-
--fi;
-
--# Check whether --with-xerces2 or --without-xerces2 was given.
-+# Check whether --with-xerces2 was given.
- if test "${with_xerces2+set}" = set; then
-- withval="$with_xerces2"
-+ withval=$with_xerces2;
-+fi
-
--fi;
-
--# Check whether --with-xalan or --without-xalan was given.
-+# Check whether --with-xalan was given.
- if test "${with_xalan+set}" = set; then
-- withval="$with_xalan"
-+ withval=$with_xalan;
-+fi
-
--fi;
-
--# Check whether --with-xalan2 or --without-xalan2 was given.
-+# Check whether --with-xalan2 was given.
- if test "${with_xalan2+set}" = set; then
-- withval="$with_xalan2"
-+ withval=$with_xalan2;
-+fi
-
--fi;
-
--# Check whether --with-zorba or --without-zorba was given.
-+# Check whether --with-zorba was given.
- if test "${with_zorba+set}" = set; then
-- withval="$with_zorba"
-+ withval=$with_zorba;
-+fi
-
--fi;
-
--# Check whether --with-zorba2 or --without-zorba2 was given.
-+# Check whether --with-zorba2 was given.
- if test "${with_zorba2+set}" = set; then
-- withval="$with_zorba2"
-+ withval=$with_zorba2;
-+fi
-
--fi;
-
--# Check whether --with-oechem or --without-oechem was given.
-+# Check whether --with-oechem was given.
- if test "${with_oechem+set}" = set; then
-- withval="$with_oechem"
-+ withval=$with_oechem;
-+fi
-
--fi;
-
--# Check whether --with-oechem2 or --without-oechem2 was given.
-+# Check whether --with-oechem2 was given.
- if test "${with_oechem2+set}" = set; then
-- withval="$with_oechem2"
-+ withval=$with_oechem2;
-+fi
-
--fi;
-
--# Check whether --with-sge or --without-sge was given.
-+# Check whether --with-sge was given.
- if test "${with_sge+set}" = set; then
-- withval="$with_sge"
-+ withval=$with_sge;
-+fi
-
--fi;
-
--# Check whether --with-sge2 or --without-sge2 was given.
-+# Check whether --with-sge2 was given.
- if test "${with_sge2+set}" = set; then
-- withval="$with_sge2"
-+ withval=$with_sge2;
-+fi
-
--fi;
-
--# Check whether --with-muparser or --without-muparser was given.
-+# Check whether --with-muparser was given.
- if test "${with_muparser+set}" = set; then
-- withval="$with_muparser"
-+ withval=$with_muparser;
-+fi
-
--fi;
-
--# Check whether --with-muparser2 or --without-muparser2 was given.
-+# Check whether --with-muparser2 was given.
- if test "${with_muparser2+set}" = set; then
-- withval="$with_muparser2"
-+ withval=$with_muparser2;
-+fi
-
--fi;
-
--# Check whether --with-hdf5 or --without-hdf5 was given.
-+# Check whether --with-hdf5 was given.
- if test "${with_hdf5+set}" = set; then
-- withval="$with_hdf5"
-+ withval=$with_hdf5;
-+fi
-
--fi;
-
--# Check whether --with-hdf5b or --without-hdf5b was given.
-+# Check whether --with-hdf5b was given.
- if test "${with_hdf5b+set}" = set; then
-- withval="$with_hdf5b"
-+ withval=$with_hdf5b;
-+fi
-
--fi;
-
--# Check whether --with-gif or --without-gif was given.
-+# Check whether --with-gif was given.
- if test "${with_gif+set}" = set; then
-- withval="$with_gif"
-+ withval=$with_gif;
-+fi
-
--fi;
-
--# Check whether --with-gif2 or --without-gif2 was given.
-+# Check whether --with-gif2 was given.
- if test "${with_gif2+set}" = set; then
-- withval="$with_gif2"
-+ withval=$with_gif2;
-+fi
-
--fi;
-
--# Check whether --with-jpeg or --without-jpeg was given.
-+# Check whether --with-jpeg was given.
- if test "${with_jpeg+set}" = set; then
-- withval="$with_jpeg"
-+ withval=$with_jpeg;
-+fi
-
--fi;
-
--# Check whether --with-jpeg2 or --without-jpeg2 was given.
-+# Check whether --with-jpeg2 was given.
- if test "${with_jpeg2+set}" = set; then
-- withval="$with_jpeg2"
-+ withval=$with_jpeg2;
-+fi
-
--fi;
-
--# Check whether --with-png or --without-png was given.
-+# Check whether --with-png was given.
- if test "${with_png+set}" = set; then
-- withval="$with_png"
-+ withval=$with_png;
-+fi
-
--fi;
-
--# Check whether --with-png2 or --without-png2 was given.
-+# Check whether --with-png2 was given.
- if test "${with_png2+set}" = set; then
-- withval="$with_png2"
-+ withval=$with_png2;
-+fi
-
--fi;
-
--# Check whether --with-tiff or --without-tiff was given.
-+# Check whether --with-tiff was given.
- if test "${with_tiff+set}" = set; then
-- withval="$with_tiff"
-+ withval=$with_tiff;
-+fi
-
--fi;
-
--# Check whether --with-tiff2 or --without-tiff2 was given.
-+# Check whether --with-tiff2 was given.
- if test "${with_tiff2+set}" = set; then
-- withval="$with_tiff2"
-+ withval=$with_tiff2;
-+fi
-
--fi;
-
--# Check whether --with-xpm or --without-xpm was given.
-+# Check whether --with-xpm was given.
- if test "${with_xpm+set}" = set; then
-- withval="$with_xpm"
-+ withval=$with_xpm;
-+fi
-
--fi;
-
--# Check whether --with-xpm2 or --without-xpm2 was given.
-+# Check whether --with-xpm2 was given.
- if test "${with_xpm2+set}" = set; then
-- withval="$with_xpm2"
-+ withval=$with_xpm2;
-+fi
-
--fi;
-
--# Check whether --with-magic or --without-magic was given.
-+# Check whether --with-magic was given.
- if test "${with_magic+set}" = set; then
-- withval="$with_magic"
-+ withval=$with_magic;
-+fi
-
--fi;
-
--# Check whether --with-magic2 or --without-magic2 was given.
-+# Check whether --with-magic2 was given.
- if test "${with_magic2+set}" = set; then
-- withval="$with_magic2"
-+ withval=$with_magic2;
-+fi
-
--fi;
-
--# Check whether --with-curl or --without-curl was given.
-+# Check whether --with-curl was given.
- if test "${with_curl+set}" = set; then
-- withval="$with_curl"
-+ withval=$with_curl;
-+fi
-
--fi;
-
--# Check whether --with-curl2 or --without-curl2 was given.
-+# Check whether --with-curl2 was given.
- if test "${with_curl2+set}" = set; then
-- withval="$with_curl2"
-+ withval=$with_curl2;
-+fi
-
--fi;
-
--# Check whether --with-mimetic or --without-mimetic was given.
-+# Check whether --with-mimetic was given.
- if test "${with_mimetic+set}" = set; then
-- withval="$with_mimetic"
-+ withval=$with_mimetic;
-+fi
-
--fi;
-
--# Check whether --with-mimetic2 or --without-mimetic2 was given.
-+# Check whether --with-mimetic2 was given.
- if test "${with_mimetic2+set}" = set; then
-- withval="$with_mimetic2"
-+ withval=$with_mimetic2;
-+fi
-+
-+
-+# Check whether --with-gsoap was given.
-+if test "${with_gsoap+set}" = set; then
-+ withval=$with_gsoap;
-+fi
-+
-+
-+# Check whether --with-gsoap2 was given.
-+if test "${with_gsoap2+set}" = set; then
-+ withval=$with_gsoap2;
-+fi
-+
-+
-+# Check whether --with-mongodb was given.
-+if test "${with_mongodb+set}" = set; then
-+ withval=$with_mongodb;
-+fi
-
--fi;
-
--# Check whether --with-3psw or --without-3psw was given.
-+# Check whether --with-mongodb2 was given.
-+if test "${with_mongodb2+set}" = set; then
-+ withval=$with_mongodb2;
-+fi
-+
-+
-+# Check whether --with-3psw was given.
- if test "${with_3psw+set}" = set; then
-- withval="$with_3psw"
-+ withval=$with_3psw;
-+fi
-
--fi;
-
--# Check whether --with-3psw2 or --without-3psw2 was given.
-+# Check whether --with-3psw2 was given.
- if test "${with_3psw2+set}" = set; then
-- withval="$with_3psw2"
-+ withval=$with_3psw2;
-+fi
-
--fi;
-
- ## Optional projects
-
--# Check whether --with-local-lbsm or --without-local-lbsm was given.
-+# Check whether --with-local-lbsm was given.
- if test "${with_local_lbsm+set}" = set; then
-- withval="$with_local_lbsm"
-+ withval=$with_local_lbsm;
-+fi
-
--fi;
-
--# Check whether --with-ncbi-crypt or --without-ncbi-crypt was given.
-+# Check whether --with-ncbi-crypt was given.
- if test "${with_ncbi_crypt+set}" = set; then
-- withval="$with_ncbi_crypt"
-+ withval=$with_ncbi_crypt;
-+fi
-
--fi;
-
--# Check whether --with-connext or --without-connext was given.
-+# Check whether --with-connext was given.
- if test "${with_connext+set}" = set; then
-- withval="$with_connext"
-+ withval=$with_connext;
-+fi
-
--fi;
-
--# Check whether --with-serial or --without-serial was given.
-+# Check whether --with-serial was given.
- if test "${with_serial+set}" = set; then
-- withval="$with_serial"
-+ withval=$with_serial;
-+fi
-
--fi;
-
--# Check whether --with-objects or --without-objects was given.
-+# Check whether --with-objects was given.
- if test "${with_objects+set}" = set; then
-- withval="$with_objects"
-+ withval=$with_objects;
-+fi
-
--fi;
-
--# Check whether --with-dbapi or --without-dbapi was given.
-+# Check whether --with-dbapi was given.
- if test "${with_dbapi+set}" = set; then
-- withval="$with_dbapi"
-+ withval=$with_dbapi;
-+fi
-
--fi;
-
--# Check whether --with-app or --without-app was given.
-+# Check whether --with-app was given.
- if test "${with_app+set}" = set; then
-- withval="$with_app"
-+ withval=$with_app;
-+fi
-
--fi;
-
--# Check whether --with-ctools or --without-ctools was given.
-+# Check whether --with-ctools was given.
- if test "${with_ctools+set}" = set; then
-- withval="$with_ctools"
-+ withval=$with_ctools;
-+fi
-
--fi;
-
--# Check whether --with-gui or --without-gui was given.
-+# Check whether --with-gui was given.
- if test "${with_gui+set}" = set; then
-- withval="$with_gui"
-+ withval=$with_gui;
-+fi
-
--fi;
-
--# Check whether --with-algo or --without-algo was given.
-+# Check whether --with-algo was given.
- if test "${with_algo+set}" = set; then
-- withval="$with_algo"
-+ withval=$with_algo;
-+fi
-
--fi;
-
--# Check whether --with-internal or --without-internal was given.
-+# Check whether --with-internal was given.
- if test "${with_internal+set}" = set; then
-- withval="$with_internal"
-+ withval=$with_internal;
-+fi
-
--fi;
-
--# Check whether --with-internal2 or --without-internal2 was given.
-+# Check whether --with-internal2 was given.
- if test "${with_internal2+set}" = set; then
-- withval="$with_internal2"
-+ withval=$with_internal2;
-+fi
-
--fi;
-
--# Check whether --with-gbench or --without-gbench was given.
-+# Check whether --with-gbench was given.
- if test "${with_gbench+set}" = set; then
-- withval="$with_gbench"
-+ withval=$with_gbench;
-+fi
-
--fi;
-
--# Check whether --with-gbench2 or --without-gbench2 was given.
-+# Check whether --with-gbench2 was given.
- if test "${with_gbench2+set}" = set; then
-- withval="$with_gbench2"
-+ withval=$with_gbench2;
-+fi
-
--fi;
-
- ## Manuals
-
--# Check whether --with-manuals or --without-manuals was given.
-+# Check whether --with-manuals was given.
- if test "${with_manuals+set}" = set; then
-- withval="$with_manuals"
--
--fi;
--
--
--#### Check the passed arguments against the list of available ones
--x_with_list="\
--debug max-debug symbols optimization profiling tcheck dll static static-exe \
--plugin-auto-load bundles bin-release mt 64 universal exe runpath hard-runpath \
--lfs limited-linker \
--autodep suffix hostspec version execopy bincopy lib-rebuilds lib-rebuilds=ask \
--deactivation makefile-auto-update projects flat-makefile configure-dialog \
--check ncbi-public strip pch caution ccache distcc \
--ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
--geo included-geo \
--z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
--ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
--bdb python perl jni sqlite3 icu boost boost-tag \
--sp expat sablot libxml libxslt libexslt xerces xalan zorba \
--oechem sge muparser hdf5 \
--gif jpeg tiff png xpm magic curl mimetic 3psw \
--local-lbsm ncbi-crypt connext \
--serial objects dbapi app ctools gui algo internal gbench"
--
--x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
--
--
--for x_arg in "$@" ; do
-- if test -z "$x_arg" ; then
-- continue
-+ withval=$with_manuals;
- fi
-
-- x_okay=
-- for x_desc in $x_with_list ; do
-- if test "$x_arg" = "$x_desc" ; then
-- x_okay="okay"
-- break
-- fi
-- done
-- if test "$x_okay" = "okay" ; then
-- continue
-- fi
-
-- case "$x_arg" in
-- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
-- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-- | --with-relative-runpath= | --x-includes= | --x-libraries= )
-- { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
--echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
-- { (exit 1); exit 1; }; }
-- ;;
-
-- --with-extra-action=* | --with-build-root=* | --with-build-root-sfx=* \
-- | --with-fake-root=* | --with-saved-settings=* \
-- | --with-projects=* | --with-check=* | --with-check-tools=* \
-- | --with-universal=* | --with-tcheck=* \
-- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
-- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-- | [A-Z]*=* \
-- | --with-z=* | --with-bz2=* | --with-lzo=* \
-- | --with-pcre=* \
-- | --with-gcrypt=* | --with-gnutls=* | --with-openssl=* \
-- | --with-krb5=* | --with-curl=* \
-- | --with-sybase-local=* | --with-wxwidgets=* | --with-mimetic=* \
-- | --with-ftds=* | --with-mysql=* | --with-fastcgi=* \
-- | --with-sqlite3=* | --with-expat=* | --with-sablot=* \
-- | --with-icu=* | --with-xerces=* | --with-xalan=* | --with-zorba=* \
-- | --with-libxml=* | --with-libxslt=* | --with-exslt=* \
-- | --with-bdb=* | --with-odbc=* | --with-python=* | --with-perl=* \
-- | --with-freetype=* | --with-ftgl=* | --with-gif=* | --with-jpeg=* \
-- | --with-png=* | --with-tiff=* | --with-xpm=* | --with-opengl=* \
-- | --with-mesa=* | --with-glut=* | --with-glew=* | --with-oechem=* \
-- | --with-boost=* | --with-boost-tag=* | --with-orbacus=* | --with-sge=* \
-- | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
-- | --x-includes=* | --x-libraries=* | --with-3psw=* \
-- | --target=* | --with-runpath=* | --with-relative-runpath=* \
-- | --no-create | --no-recursion)
-- ;;
-
-- * )
-- { { echo "$as_me:$LINENO: error: $x_arg: unknown option; use --help to show usage" >&5
--echo "$as_me: error: $x_arg: unknown option; use --help to show usage" >&2;}
-- { (exit 1); exit 1; }; }
-- ;;
-- esac
--done
-
-
- if test "$with_gbench" = "yes" ; then
-@@ -3142,6 +3951,15 @@
- : ${with_optimization=no}
- fi
-
-+if test "$with_openmp" = yes; then
-+ if test "$with_mt" = no; then
-+ { { echo "$as_me:$LINENO: error: incompatible options: --without-mt but --with-openmp" >&5
-+echo "$as_me: error: incompatible options: --without-mt but --with-openmp" >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ : ${with_mt=yes}
-+fi
-+
- #### Check for special options
- if test "$with_extra_action" = "yes" ; then
- { { echo "$as_me:$LINENO: error: --with-extra-action must have a value after =" >&5
-@@ -3201,6 +4019,10 @@
- *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
- esac
- fi
-+# Generally save any originally specified flags.
-+USER_CFLAGS=$CFLAGS
-+USER_CXXFLAGS=$CXXFLAGS
-+USER_LDFLAGS=$LDFLAGS
-
- #### Always define this
-
-@@ -3212,82 +4034,117 @@
-
- #### Get the running host's properties
- ac_aux_dir=
--for ac_dir in src/build-system $srcdir/src/build-system; do
-- if test -f $ac_dir/install-sh; then
-+for ac_dir in src/build-system "$srcdir"/src/build-system; do
-+ if test -f "$ac_dir/install-sh"; then
- ac_aux_dir=$ac_dir
- ac_install_sh="$ac_aux_dir/install-sh -c"
- break
-- elif test -f $ac_dir/install.sh; then
-+ elif test -f "$ac_dir/install.sh"; then
- ac_aux_dir=$ac_dir
- ac_install_sh="$ac_aux_dir/install.sh -c"
- break
-- elif test -f $ac_dir/shtool; then
-+ elif test -f "$ac_dir/shtool"; then
- ac_aux_dir=$ac_dir
- ac_install_sh="$ac_aux_dir/shtool install -c"
- break
- fi
- done
- if test -z "$ac_aux_dir"; then
-- { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in src/build-system $srcdir/src/build-system" >&5
--echo "$as_me: error: cannot find install-sh or install.sh in src/build-system $srcdir/src/build-system" >&2;}
-+ { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in src/build-system \"$srcdir\"/src/build-system" >&5
-+echo "$as_me: error: cannot find install-sh or install.sh in src/build-system \"$srcdir\"/src/build-system" >&2;}
- { (exit 1); exit 1; }; }
- fi
--ac_config_guess="$SHELL $ac_aux_dir/config.guess"
--ac_config_sub="$SHELL $ac_aux_dir/config.sub"
--ac_configure="$SHELL $ac_aux_dir/configure" # This should be Cygnus configure.
-+
-+# These three variables are undocumented and unsupported,
-+# and are intended to be withdrawn in a future Autoconf release.
-+# They can cause serious problems if a builder's source tree is in a directory
-+# whose full name contains unusual characters.
-+ac_config_guess="$SHELL $ac_aux_dir/config.guess" # Please don't use this var.
-+ac_config_sub="$SHELL $ac_aux_dir/config.sub" # Please don't use this var.
-+ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var.
-+
-
- # Make sure we can run config.sub.
--$ac_config_sub sun4 >/dev/null 2>&1 ||
-- { { echo "$as_me:$LINENO: error: cannot run $ac_config_sub" >&5
--echo "$as_me: error: cannot run $ac_config_sub" >&2;}
-+$SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
-+ { { echo "$as_me:$LINENO: error: cannot run $SHELL $ac_aux_dir/config.sub" >&5
-+echo "$as_me: error: cannot run $SHELL $ac_aux_dir/config.sub" >&2;}
- { (exit 1); exit 1; }; }
-
--echo "$as_me:$LINENO: checking build system type" >&5
--echo $ECHO_N "checking build system type... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking build system type" >&5
-+echo $ECHO_N "checking build system type... $ECHO_C" >&6; }
- if test "${ac_cv_build+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_cv_build_alias=$build_alias
--test -z "$ac_cv_build_alias" &&
-- ac_cv_build_alias=`$ac_config_guess`
--test -z "$ac_cv_build_alias" &&
-+ ac_build_alias=$build_alias
-+test "x$ac_build_alias" = x &&
-+ ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
-+test "x$ac_build_alias" = x &&
- { { echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
- echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
- { (exit 1); exit 1; }; }
--ac_cv_build=`$ac_config_sub $ac_cv_build_alias` ||
-- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_build_alias failed" >&5
--echo "$as_me: error: $ac_config_sub $ac_cv_build_alias failed" >&2;}
-+ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
-+ { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
-+echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&2;}
- { (exit 1); exit 1; }; }
-
- fi
--echo "$as_me:$LINENO: result: $ac_cv_build" >&5
--echo "${ECHO_T}$ac_cv_build" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_build" >&5
-+echo "${ECHO_T}$ac_cv_build" >&6; }
-+case $ac_cv_build in
-+*-*-*) ;;
-+*) { { echo "$as_me:$LINENO: error: invalid value of canonical build" >&5
-+echo "$as_me: error: invalid value of canonical build" >&2;}
-+ { (exit 1); exit 1; }; };;
-+esac
- build=$ac_cv_build
--build_cpu=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
--build_vendor=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
--build_os=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
-+ac_save_IFS=$IFS; IFS='-'
-+set x $ac_cv_build
-+shift
-+build_cpu=$1
-+build_vendor=$2
-+shift; shift
-+# Remember, the first character of IFS is used to create $*,
-+# except with old shells:
-+build_os=$*
-+IFS=$ac_save_IFS
-+case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
-
-
--echo "$as_me:$LINENO: checking host system type" >&5
--echo $ECHO_N "checking host system type... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking host system type" >&5
-+echo $ECHO_N "checking host system type... $ECHO_C" >&6; }
- if test "${ac_cv_host+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_cv_host_alias=$host_alias
--test -z "$ac_cv_host_alias" &&
-- ac_cv_host_alias=$ac_cv_build_alias
--ac_cv_host=`$ac_config_sub $ac_cv_host_alias` ||
-- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_host_alias failed" >&5
--echo "$as_me: error: $ac_config_sub $ac_cv_host_alias failed" >&2;}
-+ if test "x$host_alias" = x; then
-+ ac_cv_host=$ac_cv_build
-+else
-+ ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
-+ { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
-+echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&2;}
- { (exit 1); exit 1; }; }
-+fi
-
- fi
--echo "$as_me:$LINENO: result: $ac_cv_host" >&5
--echo "${ECHO_T}$ac_cv_host" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_host" >&5
-+echo "${ECHO_T}$ac_cv_host" >&6; }
-+case $ac_cv_host in
-+*-*-*) ;;
-+*) { { echo "$as_me:$LINENO: error: invalid value of canonical host" >&5
-+echo "$as_me: error: invalid value of canonical host" >&2;}
-+ { (exit 1); exit 1; }; };;
-+esac
- host=$ac_cv_host
--host_cpu=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
--host_vendor=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
--host_os=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
-+ac_save_IFS=$IFS; IFS='-'
-+set x $ac_cv_host
-+shift
-+host_cpu=$1
-+host_vendor=$2
-+shift; shift
-+# Remember, the first character of IFS is used to create $*,
-+# except with old shells:
-+host_os=$*
-+IFS=$ac_save_IFS
-+case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
-
-
-
-@@ -3326,8 +4183,8 @@
- # SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
- # OS/2's system install, which has a completely different semantic
- # ./install, which can be erroneously created by make from ./install.sh.
--echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
--echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
-+echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6; }
- if test -z "$INSTALL"; then
- if test "${ac_cv_path_install+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-@@ -3349,7 +4206,7 @@
- # by default.
- for ac_prog in ginstall scoinst install; do
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; }; then
- if test $ac_prog = install &&
- grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
- # AIX install. It has an incompatible calling convention.
-@@ -3368,21 +4225,22 @@
- ;;
- esac
- done
-+IFS=$as_save_IFS
-
-
- fi
- if test "${ac_cv_path_install+set}" = set; then
- INSTALL=$ac_cv_path_install
- else
-- # As a last resort, use the slow shell script. We don't cache a
-- # path for INSTALL within a source directory, because that will
-+ # As a last resort, use the slow shell script. Don't cache a
-+ # value for INSTALL within a source directory, because that will
- # break other packages using the cache if that directory is
-- # removed, or if the path is relative.
-+ # removed, or if the value is a relative name.
- INSTALL=$ac_install_sh
- fi
- fi
--echo "$as_me:$LINENO: result: $INSTALL" >&5
--echo "${ECHO_T}$INSTALL" >&6
-+{ echo "$as_me:$LINENO: result: $INSTALL" >&5
-+echo "${ECHO_T}$INSTALL" >&6; }
-
- # Use test -z because SunOS4 sh mishandles braces in ${var-val}.
- # It thinks the first close brace ends the variable substitution.
-@@ -3393,9 +4251,26 @@
- test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
-
-
-+#### Point ICC at a suitable GCC version ASAP.
-+case "/$CXX" in
-+ */icpc )
-+ if test -d /usr/local/gcc; then
-+ case "`$CXX -dumpversion`:$host_cpu" in
-+ *:i?86) v=4.4.5 ;;
-+ ?.* | 1[01].* ) v=4.0.1 ;;
-+ *) v=4.4.2 ;;
-+ esac
-+ gcc=/usr/local/gcc/$v/bin/gcc
-+ if test -x $gcc; then
-+ CC="$CC -gcc-name=$gcc"
-+ CXX="$CXX -gcc-name=$gcc"
-+ fi
-+ fi
-+ ;;
-+esac
-
- #### C and C++ compilers
--ac_ext=cc
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-@@ -3409,8 +4284,8 @@
- if test -n "$ac_tool_prefix"; then
- # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
- set dummy ${ac_tool_prefix}gcc; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -3423,32 +4298,34 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_CC="${ac_tool_prefix}gcc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- CC=$ac_cv_prog_CC
- if test -n "$CC"; then
-- echo "$as_me:$LINENO: result: $CC" >&5
--echo "${ECHO_T}$CC" >&6
-+ { echo "$as_me:$LINENO: result: $CC" >&5
-+echo "${ECHO_T}$CC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- fi
- if test -z "$ac_cv_prog_CC"; then
- ac_ct_CC=$CC
- # Extract the first word of "gcc", so it can be a program name with args.
- set dummy gcc; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -3461,26 +4338,41 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_ac_ct_CC="gcc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- ac_ct_CC=$ac_cv_prog_ac_ct_CC
- if test -n "$ac_ct_CC"; then
-- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
--echo "${ECHO_T}$ac_ct_CC" >&6
-+ { echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
-+echo "${ECHO_T}$ac_ct_CC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+ if test "x$ac_ct_CC" = x; then
-+ CC=""
-+ else
-+ case $cross_compiling:$ac_tool_warned in
-+yes:)
-+{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&5
-+echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&2;}
-+ac_tool_warned=yes ;;
-+esac
- CC=$ac_ct_CC
-+ fi
- else
- CC="$ac_cv_prog_CC"
- fi
-@@ -3489,8 +4381,8 @@
- if test -n "$ac_tool_prefix"; then
- # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
- set dummy ${ac_tool_prefix}cc; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -3503,131 +4395,93 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_CC="${ac_tool_prefix}cc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- CC=$ac_cv_prog_CC
- if test -n "$CC"; then
-- echo "$as_me:$LINENO: result: $CC" >&5
--echo "${ECHO_T}$CC" >&6
-+ { echo "$as_me:$LINENO: result: $CC" >&5
-+echo "${ECHO_T}$CC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- fi
--if test -z "$ac_cv_prog_CC"; then
-- ac_ct_CC=$CC
-+fi
-+if test -z "$CC"; then
- # Extract the first word of "cc", so it can be a program name with args.
- set dummy cc; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- if test -n "$ac_ct_CC"; then
-- ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
-+ if test -n "$CC"; then
-+ ac_cv_prog_CC="$CC" # Let the user override the test.
- else
-+ ac_prog_rejected=no
- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
- for as_dir in $PATH
- do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_prog_ac_ct_CC="cc"
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
-+ ac_prog_rejected=yes
-+ continue
-+ fi
-+ ac_cv_prog_CC="cc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
--fi
--fi
--ac_ct_CC=$ac_cv_prog_ac_ct_CC
--if test -n "$ac_ct_CC"; then
-- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
--echo "${ECHO_T}$ac_ct_CC" >&6
--else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
--fi
--
-- CC=$ac_ct_CC
--else
-- CC="$ac_cv_prog_CC"
--fi
--
--fi
--if test -z "$CC"; then
-- # Extract the first word of "cc", so it can be a program name with args.
--set dummy cc; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_prog_CC+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- if test -n "$CC"; then
-- ac_cv_prog_CC="$CC" # Let the user override the test.
--else
-- ac_prog_rejected=no
--as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--for as_dir in $PATH
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
-- ac_prog_rejected=yes
-- continue
-- fi
-- ac_cv_prog_CC="cc"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
-- fi
--done
--done
--
--if test $ac_prog_rejected = yes; then
-- # We found a bogon in the path, so make sure we never use it.
-- set dummy $ac_cv_prog_CC
-- shift
-- if test $# != 0; then
-- # We chose a different compiler from the bogus one.
-- # However, it has the same basename, so the bogon will be chosen
-- # first if we set CC to just the basename; use the full file name.
-- shift
-- ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
-+if test $ac_prog_rejected = yes; then
-+ # We found a bogon in the path, so make sure we never use it.
-+ set dummy $ac_cv_prog_CC
-+ shift
-+ if test $# != 0; then
-+ # We chose a different compiler from the bogus one.
-+ # However, it has the same basename, so the bogon will be chosen
-+ # first if we set CC to just the basename; use the full file name.
-+ shift
-+ ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
- fi
- fi
- fi
- fi
- CC=$ac_cv_prog_CC
- if test -n "$CC"; then
-- echo "$as_me:$LINENO: result: $CC" >&5
--echo "${ECHO_T}$CC" >&6
-+ { echo "$as_me:$LINENO: result: $CC" >&5
-+echo "${ECHO_T}$CC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- fi
- if test -z "$CC"; then
- if test -n "$ac_tool_prefix"; then
-- for ac_prog in cl
-+ for ac_prog in cl.exe
- do
- # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
- set dummy $ac_tool_prefix$ac_prog; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -3640,36 +4494,38 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- CC=$ac_cv_prog_CC
- if test -n "$CC"; then
-- echo "$as_me:$LINENO: result: $CC" >&5
--echo "${ECHO_T}$CC" >&6
-+ { echo "$as_me:$LINENO: result: $CC" >&5
-+echo "${ECHO_T}$CC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- test -n "$CC" && break
- done
- fi
- if test -z "$CC"; then
- ac_ct_CC=$CC
-- for ac_prog in cl
-+ for ac_prog in cl.exe
- do
- # Extract the first word of "$ac_prog", so it can be a program name with args.
- set dummy $ac_prog; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -3682,30 +4538,46 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_ac_ct_CC="$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- ac_ct_CC=$ac_cv_prog_ac_ct_CC
- if test -n "$ac_ct_CC"; then
-- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
--echo "${ECHO_T}$ac_ct_CC" >&6
-+ { echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
-+echo "${ECHO_T}$ac_ct_CC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- test -n "$ac_ct_CC" && break
- done
-
-+ if test "x$ac_ct_CC" = x; then
-+ CC=""
-+ else
-+ case $cross_compiling:$ac_tool_warned in
-+yes:)
-+{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&5
-+echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&2;}
-+ac_tool_warned=yes ;;
-+esac
- CC=$ac_ct_CC
- fi
-+fi
-
- fi
-
-@@ -3717,21 +4589,35 @@
- { (exit 1); exit 1; }; }
-
- # Provide some information about the compiler.
--echo "$as_me:$LINENO:" \
-- "checking for C compiler version" >&5
-+echo "$as_me:$LINENO: checking for C compiler version" >&5
- ac_compiler=`set X $ac_compile; echo $2`
--{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
-- (eval $ac_compiler --version </dev/null >&5) 2>&5
-+{ (ac_try="$ac_compiler --version >&5"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compiler --version >&5") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
--{ (eval echo "$as_me:$LINENO: \"$ac_compiler -v </dev/null >&5\"") >&5
-- (eval $ac_compiler -v </dev/null >&5) 2>&5
-+{ (ac_try="$ac_compiler -v >&5"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compiler -v >&5") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
--{ (eval echo "$as_me:$LINENO: \"$ac_compiler -V </dev/null >&5\"") >&5
-- (eval $ac_compiler -V </dev/null >&5) 2>&5
-+{ (ac_try="$ac_compiler -V >&5"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compiler -V >&5") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
-@@ -3756,46 +4642,70 @@
- # Try to create an executable without -o first, disregard a.out.
- # It will help us diagnose broken compilers, and finding out an intuition
- # of exeext.
--echo "$as_me:$LINENO: checking for C compiler default output file name" >&5
--echo $ECHO_N "checking for C compiler default output file name... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for C compiler default output file name" >&5
-+echo $ECHO_N "checking for C compiler default output file name... $ECHO_C" >&6; }
- ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
--if { (eval echo "$as_me:$LINENO: \"$ac_link_default\"") >&5
-- (eval $ac_link_default) 2>&5
-+#
-+# List of possible output files, starting from the most likely.
-+# The algorithm is not robust to junk in `.', hence go to wildcards (a.*)
-+# only as a last resort. b.out is created by i960 compilers.
-+ac_files='a_out.exe a.exe conftest.exe a.out conftest a.* conftest.* b.out'
-+#
-+# The IRIX 6 linker writes into existing files which may not be
-+# executable, retaining their permissions. Remove them first so a
-+# subsequent execution test works.
-+ac_rmfiles=
-+for ac_file in $ac_files
-+do
-+ case $ac_file in
-+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
-+ * ) ac_rmfiles="$ac_rmfiles $ac_file";;
-+ esac
-+done
-+rm -f $ac_rmfiles
-+
-+if { (ac_try="$ac_link_default"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link_default") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; then
-- # Find the output, starting from the most likely. This scheme is
--# not robust to junk in `.', hence go to wildcards (a.*) only as a last
--# resort.
--
--# Be careful to initialize this variable, since it used to be cached.
--# Otherwise an old cache value of `no' led to `EXEEXT = no' in a Makefile.
--ac_cv_exeext=
--# b.out is created by i960 compilers.
--for ac_file in a_out.exe a.exe conftest.exe a.out conftest a.* conftest.* b.out
-+ # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
-+# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
-+# in a Makefile. We should not override ac_cv_exeext if it was cached,
-+# so that the user can short-circuit this test for compilers unknown to
-+# Autoconf.
-+for ac_file in $ac_files
- do
- test -f "$ac_file" || continue
- case $ac_file in
-- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj )
-- ;;
-- conftest.$ac_ext )
-- # This is the source file.
-+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj )
- ;;
- [ab].out )
- # We found the default executable, but exeext='' is most
- # certainly right.
- break;;
- *.* )
-+ if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
-+ then :; else
- ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
-- # FIXME: I believe we export ac_cv_exeext for Libtool,
-- # but it would be cool to find out if it's true. Does anybody
-- # maintain Libtool? --akim.
-- export ac_cv_exeext
-+ fi
-+ # We set ac_cv_exeext here because the later test for it is not
-+ # safe: cross compilers may not add the suffix if given an `-o'
-+ # argument, so we may need to know it at that point already.
-+ # Even if this section looks crufty: it has the advantage of
-+ # actually working.
- break;;
- * )
- break;;
- esac
- done
-+test "$ac_cv_exeext" = no && ac_cv_exeext=
-+
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-@@ -3808,19 +4718,23 @@
- fi
-
- ac_exeext=$ac_cv_exeext
--echo "$as_me:$LINENO: result: $ac_file" >&5
--echo "${ECHO_T}$ac_file" >&6
-+{ echo "$as_me:$LINENO: result: $ac_file" >&5
-+echo "${ECHO_T}$ac_file" >&6; }
-
--# Check the compiler produces executables we can run. If not, either
-+# Check that the compiler produces executables we can run. If not, either
- # the compiler is broken, or we cross compile.
--echo "$as_me:$LINENO: checking whether the C compiler works" >&5
--echo $ECHO_N "checking whether the C compiler works... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether the C compiler works" >&5
-+echo $ECHO_N "checking whether the C compiler works... $ECHO_C" >&6; }
- # FIXME: These cross compiler hacks should be removed for Autoconf 3.0
- # If not cross compiling, check that we can run a simple program.
- if test "$cross_compiling" != yes; then
- if { ac_try='./$ac_file'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -3839,22 +4753,27 @@
- fi
- fi
- fi
--echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
-+{ echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
-
- rm -f a.out a.exe conftest$ac_cv_exeext b.out
- ac_clean_files=$ac_clean_files_save
--# Check the compiler produces executables we can run. If not, either
-+# Check that the compiler produces executables we can run. If not, either
- # the compiler is broken, or we cross compile.
--echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
--echo $ECHO_N "checking whether we are cross compiling... $ECHO_C" >&6
--echo "$as_me:$LINENO: result: $cross_compiling" >&5
--echo "${ECHO_T}$cross_compiling" >&6
--
--echo "$as_me:$LINENO: checking for suffix of executables" >&5
--echo $ECHO_N "checking for suffix of executables... $ECHO_C" >&6
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+{ echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
-+echo $ECHO_N "checking whether we are cross compiling... $ECHO_C" >&6; }
-+{ echo "$as_me:$LINENO: result: $cross_compiling" >&5
-+echo "${ECHO_T}$cross_compiling" >&6; }
-+
-+{ echo "$as_me:$LINENO: checking for suffix of executables" >&5
-+echo $ECHO_N "checking for suffix of executables... $ECHO_C" >&6; }
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; then
-@@ -3865,9 +4784,8 @@
- for ac_file in conftest.exe conftest conftest.*; do
- test -f "$ac_file" || continue
- case $ac_file in
-- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj ) ;;
-+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
- *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
-- export ac_cv_exeext
- break;;
- * ) break;;
- esac
-@@ -3881,14 +4799,14 @@
- fi
-
- rm -f conftest$ac_cv_exeext
--echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
--echo "${ECHO_T}$ac_cv_exeext" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
-+echo "${ECHO_T}$ac_cv_exeext" >&6; }
-
- rm -f conftest.$ac_ext
- EXEEXT=$ac_cv_exeext
- ac_exeext=$EXEEXT
--echo "$as_me:$LINENO: checking for suffix of object files" >&5
--echo $ECHO_N "checking for suffix of object files... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for suffix of object files" >&5
-+echo $ECHO_N "checking for suffix of object files... $ECHO_C" >&6; }
- if test "${ac_cv_objext+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -3908,14 +4826,20 @@
- }
- _ACEOF
- rm -f conftest.o conftest.obj
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>&5
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; then
-- for ac_file in `(ls conftest.o conftest.obj; ls conftest.*) 2>/dev/null`; do
-+ for ac_file in conftest.o conftest.obj conftest.*; do
-+ test -f "$ac_file" || continue;
- case $ac_file in
-- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg ) ;;
-+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf ) ;;
- *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
- break;;
- esac
-@@ -3933,12 +4857,12 @@
-
- rm -f conftest.$ac_cv_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
--echo "${ECHO_T}$ac_cv_objext" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
-+echo "${ECHO_T}$ac_cv_objext" >&6; }
- OBJEXT=$ac_cv_objext
- ac_objext=$OBJEXT
--echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
--echo $ECHO_N "checking whether we are using the GNU C compiler... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
-+echo $ECHO_N "checking whether we are using the GNU C compiler... $ECHO_C" >&6; }
- if test "${ac_cv_c_compiler_gnu+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -3961,24 +4885,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -3989,21 +4925,25 @@
-
- ac_compiler_gnu=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- ac_cv_c_compiler_gnu=$ac_compiler_gnu
-
- fi
--echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
--echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
-+echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6; }
- GCC=`test $ac_compiler_gnu = yes && echo yes`
- ac_test_CFLAGS=${CFLAGS+set}
- ac_save_CFLAGS=$CFLAGS
--CFLAGS="-g"
--echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
--echo $ECHO_N "checking whether $CC accepts -g... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
-+echo $ECHO_N "checking whether $CC accepts -g... $ECHO_C" >&6; }
- if test "${ac_cv_prog_cc_g+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-+ ac_save_c_werror_flag=$ac_c_werror_flag
-+ ac_c_werror_flag=yes
-+ ac_cv_prog_cc_g=no
-+ CFLAGS="-g"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -4020,24 +4960,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -4046,12 +4998,131 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_prog_cc_g=no
-+ CFLAGS=""
-+ cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+
-+int
-+main ()
-+{
-+
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest.$ac_objext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ :
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ac_c_werror_flag=$ac_save_c_werror_flag
-+ CFLAGS="-g"
-+ cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+
-+int
-+main ()
-+{
-+
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest.$ac_objext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ac_cv_prog_cc_g=yes
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+ ac_c_werror_flag=$ac_save_c_werror_flag
- fi
--echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
--echo "${ECHO_T}$ac_cv_prog_cc_g" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
-+echo "${ECHO_T}$ac_cv_prog_cc_g" >&6; }
- if test "$ac_test_CFLAGS" = set; then
- CFLAGS=$ac_save_CFLAGS
- elif test $ac_cv_prog_cc_g = yes; then
-@@ -4067,12 +5138,12 @@
- CFLAGS=
- fi
- fi
--echo "$as_me:$LINENO: checking for $CC option to accept ANSI C" >&5
--echo $ECHO_N "checking for $CC option to accept ANSI C... $ECHO_C" >&6
--if test "${ac_cv_prog_cc_stdc+set}" = set; then
-+{ echo "$as_me:$LINENO: checking for $CC option to accept ISO C89" >&5
-+echo $ECHO_N "checking for $CC option to accept ISO C89... $ECHO_C" >&6; }
-+if test "${ac_cv_prog_cc_c89+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_cv_prog_cc_stdc=no
-+ ac_cv_prog_cc_c89=no
- ac_save_CC=$CC
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -4106,12 +5177,17 @@
- /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has
- function prototypes and stuff, but not '\xHH' hex character constants.
- These don't provoke an error unfortunately, instead are silently treated
-- as 'x'. The following induces an error, until -std1 is added to get
-+ as 'x'. The following induces an error, until -std is added to get
- proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an
- array size at least. It's necessary to write '\x00'==0 to get something
-- that's true only with -std1. */
-+ that's true only with -std. */
- int osf4_cc_array ['\x00' == 0 ? 1 : -1];
-
-+/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
-+ inside strings and character constants. */
-+#define FOO(x) 'x'
-+int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
-+
- int test (int i, double x);
- struct s1 {int (*f) (int a);};
- struct s2 {int (*f) (double a);};
-@@ -4126,265 +5202,140 @@
- return 0;
- }
- _ACEOF
--# Don't try gcc -ansi; that turns off useful extensions and
--# breaks some systems' header files.
--# AIX -qlanglvl=ansi
--# Ultrix and OSF/1 -std1
--# HP-UX 10.20 and later -Ae
--# HP-UX older versions -Aa -D_HPUX_SOURCE
--# SVR4 -Xc -D__EXTENSIONS__
--for ac_arg in "" -qlanglvl=ansi -std1 -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
-+for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
-+ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
- do
- CC="$ac_save_CC $ac_arg"
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_prog_cc_stdc=$ac_arg
--break
-+ ac_cv_prog_cc_c89=$ac_arg
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext
-+
-+rm -f core conftest.err conftest.$ac_objext
-+ test "x$ac_cv_prog_cc_c89" != "xno" && break
- done
--rm -f conftest.$ac_ext conftest.$ac_objext
-+rm -f conftest.$ac_ext
- CC=$ac_save_CC
-
- fi
--
--case "x$ac_cv_prog_cc_stdc" in
-- x|xno)
-- echo "$as_me:$LINENO: result: none needed" >&5
--echo "${ECHO_T}none needed" >&6 ;;
-- *)
-- echo "$as_me:$LINENO: result: $ac_cv_prog_cc_stdc" >&5
--echo "${ECHO_T}$ac_cv_prog_cc_stdc" >&6
-- CC="$CC $ac_cv_prog_cc_stdc" ;;
-+# AC_CACHE_VAL
-+case "x$ac_cv_prog_cc_c89" in
-+ x)
-+ { echo "$as_me:$LINENO: result: none needed" >&5
-+echo "${ECHO_T}none needed" >&6; } ;;
-+ xno)
-+ { echo "$as_me:$LINENO: result: unsupported" >&5
-+echo "${ECHO_T}unsupported" >&6; } ;;
-+ *)
-+ CC="$CC $ac_cv_prog_cc_c89"
-+ { echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5
-+echo "${ECHO_T}$ac_cv_prog_cc_c89" >&6; } ;;
- esac
-
--# Some people use a C++ compiler to compile C. Since we use `exit',
--# in C++ we need to declare it. In case someone uses the same compiler
--# for both compiling C and C++ we need to have the C++ compiler decide
--# the declaration of exit, since it's the most demanding environment.
--cat >conftest.$ac_ext <<_ACEOF
--#ifndef __cplusplus
-- choke me
--#endif
--_ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- for ac_declaration in \
-- '' \
-- 'extern "C" void std::exit (int) throw (); using std::exit;' \
-- 'extern "C" void std::exit (int); using std::exit;' \
-- 'extern "C" void exit (int) throw ();' \
-- 'extern "C" void exit (int);' \
-- 'void exit (int);'
-+
-+ac_ext=cpp
-+ac_cpp='$CXXCPP $CPPFLAGS'
-+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-+
-+ac_ext=cpp
-+ac_cpp='$CXXCPP $CPPFLAGS'
-+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-+if test -z "$CXX"; then
-+ if test -n "$CCC"; then
-+ CXX=$CCC
-+ else
-+ if test -n "$ac_tool_prefix"; then
-+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
- do
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--$ac_declaration
--#include <stdlib.h>
--int
--main ()
--{
--exit (42);
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- :
-+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
-+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_prog_CXX+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--continue
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--$ac_declaration
--int
--main ()
--{
--exit (42);
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- break
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--done
--rm -f conftest*
--if test -n "$ac_declaration"; then
-- echo '#ifdef __cplusplus' >>confdefs.h
-- echo $ac_declaration >>confdefs.h
-- echo '#endif' >>confdefs.h
--fi
--
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--ac_ext=cc
--ac_cpp='$CXXCPP $CPPFLAGS'
--ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
--ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
--ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
--
--ac_ext=cc
--ac_cpp='$CXXCPP $CPPFLAGS'
--ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
--ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
--ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
--if test -n "$ac_tool_prefix"; then
-- for ac_prog in $CCC g++ c++ gpp aCC CC cxx cc++ cl FCC KCC RCC xlC_r xlC
-- do
-- # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
--set dummy $ac_tool_prefix$ac_prog; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_prog_CXX+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- if test -n "$CXX"; then
-- ac_cv_prog_CXX="$CXX" # Let the user override the test.
--else
--as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--for as_dir in $PATH
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
-+ if test -n "$CXX"; then
-+ ac_cv_prog_CXX="$CXX" # Let the user override the test.
-+else
-+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+for as_dir in $PATH
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- CXX=$ac_cv_prog_CXX
- if test -n "$CXX"; then
-- echo "$as_me:$LINENO: result: $CXX" >&5
--echo "${ECHO_T}$CXX" >&6
-+ { echo "$as_me:$LINENO: result: $CXX" >&5
-+echo "${ECHO_T}$CXX" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- test -n "$CXX" && break
- done
- fi
- if test -z "$CXX"; then
- ac_ct_CXX=$CXX
-- for ac_prog in $CCC g++ c++ gpp aCC CC cxx cc++ cl FCC KCC RCC xlC_r xlC
-+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
- do
- # Extract the first word of "$ac_prog", so it can be a program name with args.
- set dummy $ac_prog; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -4397,55 +5348,85 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_ac_ct_CXX="$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
- if test -n "$ac_ct_CXX"; then
-- echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
--echo "${ECHO_T}$ac_ct_CXX" >&6
-+ { echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
-+echo "${ECHO_T}$ac_ct_CXX" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- test -n "$ac_ct_CXX" && break
- done
--test -n "$ac_ct_CXX" || ac_ct_CXX="g++"
-
-+ if test "x$ac_ct_CXX" = x; then
-+ CXX="g++"
-+ else
-+ case $cross_compiling:$ac_tool_warned in
-+yes:)
-+{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&5
-+echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&2;}
-+ac_tool_warned=yes ;;
-+esac
- CXX=$ac_ct_CXX
- fi
-+fi
-
--
-+ fi
-+fi
- # Provide some information about the compiler.
--echo "$as_me:$LINENO:" \
-- "checking for C++ compiler version" >&5
-+echo "$as_me:$LINENO: checking for C++ compiler version" >&5
- ac_compiler=`set X $ac_compile; echo $2`
--{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
-- (eval $ac_compiler --version </dev/null >&5) 2>&5
-+{ (ac_try="$ac_compiler --version >&5"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compiler --version >&5") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
--{ (eval echo "$as_me:$LINENO: \"$ac_compiler -v </dev/null >&5\"") >&5
-- (eval $ac_compiler -v </dev/null >&5) 2>&5
-+{ (ac_try="$ac_compiler -v >&5"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compiler -v >&5") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
--{ (eval echo "$as_me:$LINENO: \"$ac_compiler -V </dev/null >&5\"") >&5
-- (eval $ac_compiler -V </dev/null >&5) 2>&5
-+{ (ac_try="$ac_compiler -V >&5"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compiler -V >&5") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
-
--echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
--echo $ECHO_N "checking whether we are using the GNU C++ compiler... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
-+echo $ECHO_N "checking whether we are using the GNU C++ compiler... $ECHO_C" >&6; }
- if test "${ac_cv_cxx_compiler_gnu+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -4468,24 +5449,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -4496,21 +5489,25 @@
-
- ac_compiler_gnu=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- ac_cv_cxx_compiler_gnu=$ac_compiler_gnu
-
- fi
--echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
--echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
-+echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6; }
- GXX=`test $ac_compiler_gnu = yes && echo yes`
- ac_test_CXXFLAGS=${CXXFLAGS+set}
- ac_save_CXXFLAGS=$CXXFLAGS
--CXXFLAGS="-g"
--echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
--echo $ECHO_N "checking whether $CXX accepts -g... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
-+echo $ECHO_N "checking whether $CXX accepts -g... $ECHO_C" >&6; }
- if test "${ac_cv_prog_cxx_g+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-+ ac_save_cxx_werror_flag=$ac_cxx_werror_flag
-+ ac_cxx_werror_flag=yes
-+ ac_cv_prog_cxx_g=no
-+ CXXFLAGS="-g"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -4527,24 +5524,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -4553,70 +5562,53 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_prog_cxx_g=no
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
--echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6
--if test "$ac_test_CXXFLAGS" = set; then
-- CXXFLAGS=$ac_save_CXXFLAGS
--elif test $ac_cv_prog_cxx_g = yes; then
-- if test "$GXX" = yes; then
-- CXXFLAGS="-g -O2"
-- else
-- CXXFLAGS="-g"
-- fi
--else
-- if test "$GXX" = yes; then
-- CXXFLAGS="-O2"
-- else
-- CXXFLAGS=
-- fi
--fi
--for ac_declaration in \
-- '' \
-- 'extern "C" void std::exit (int) throw (); using std::exit;' \
-- 'extern "C" void std::exit (int); using std::exit;' \
-- 'extern "C" void exit (int) throw ();' \
-- 'extern "C" void exit (int);' \
-- 'void exit (int);'
--do
-+ CXXFLAGS=""
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--$ac_declaration
--#include <stdlib.h>
-+
- int
- main ()
- {
--exit (42);
-+
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -4625,62 +5617,92 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--continue
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
-+ CXXFLAGS="-g"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--$ac_declaration
-+
- int
- main ()
- {
--exit (42);
-+
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- break
-+ ac_cv_prog_cxx_g=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--done
--rm -f conftest*
--if test -n "$ac_declaration"; then
-- echo '#ifdef __cplusplus' >>confdefs.h
-- echo $ac_declaration >>confdefs.h
-- echo '#endif' >>confdefs.h
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
-
--ac_ext=cc
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
-+echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6; }
-+if test "$ac_test_CXXFLAGS" = set; then
-+ CXXFLAGS=$ac_save_CXXFLAGS
-+elif test $ac_cv_prog_cxx_g = yes; then
-+ if test "$GXX" = yes; then
-+ CXXFLAGS="-g -O2"
-+ else
-+ CXXFLAGS="-g"
-+ fi
-+else
-+ if test "$GXX" = yes; then
-+ CXXFLAGS="-O2"
-+ else
-+ CXXFLAGS=
-+ fi
-+fi
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-@@ -4962,7 +5984,7 @@
- echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
- * )
- echo "Do you still want to proceed (at your own risk)? [y/N]"
-- read answer
-+ read answer <& 7
- case "$answer" in
- [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
- echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
-@@ -5059,6 +6081,30 @@
- ;;
- * ) NCBIATOMIC_LIB=xncbi ;;
- esac
-+ case "$compiler" in
-+ GCC )
-+ if $CC -v | grep clang >/dev/null; then
-+ :
-+ # Will allegedly support -openmp at some point, but as of 3.4,
-+ # just parses it as specifying an output filename: -o penmp.
-+ else
-+ case "$compiler_version" in
-+ [123]?? | 4[01]? ) ;;
-+ * ) : ${OPENMP_FLAGS=-fopenmp} ;;
-+ esac
-+ fi
-+ ;;
-+ ICC )
-+ : ${OPENMP_FLAGS=-openmp}
-+ ;;
-+ WorkShop* )
-+ : ${OPENMP_FLAGS=-xopenmp=parallel}
-+ ;;
-+ esac
-+ if test "$with_openmp" = yes; then
-+ MT_FLAG="$MT_FLAG $OPENMP_FLAGS"
-+ OPENMP_FLAGS=
-+ fi
- mt_sfx="MT"
- WithFeatures="$WithFeatures${WithFeaturesSep}MT"; WithFeaturesSep=" "
- else
-@@ -5066,6 +6112,7 @@
- MT_FLAG=
- THREAD_LIBS=
- NCBIATOMIC_LIB=
-+ OPENMP_FLAGS=
- mt_sfx=""
- fi
- MT_SFX="${mt_sfx}"
-@@ -5078,11 +6125,19 @@
- APP_LDFLAGS=
- DLL_LDFLAGS=
-
-+### Should go before any test compiler runs
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define _GNU_SOURCE 1
-+_ACEOF
-+
-+
-+
- case "$host_os:$compiler" in
- darwin*:GCC )
-
--echo "$as_me:$LINENO: checking whether $CC supports -Wl,-rpath" >&5
--echo $ECHO_N "checking whether $CC supports -Wl,-rpath... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether $CC supports -Wl,-rpath" >&5
-+echo $ECHO_N "checking whether $CC supports -Wl,-rpath... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_cc_wl_rpath+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -5104,24 +6159,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -5132,16 +6199,17 @@
-
- ncbi_cv_prog_cc_wl_rpath=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LDFLAGS=$orig_LDFLAGS
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_rpath" >&5
--echo "${ECHO_T}$ncbi_cv_prog_cc_wl_rpath" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_rpath" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_cc_wl_rpath" >&6; }
- ;;
- *:GCC | *:ICC )
-- echo "$as_me:$LINENO: checking whether $CC has an option to export all symbols" >&5
--echo $ECHO_N "checking whether $CC has an option to export all symbols... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether $CC has an option to export all symbols" >&5
-+echo $ECHO_N "checking whether $CC has an option to export all symbols... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_cc_export_all+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -5165,24 +6233,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -5191,19 +6271,21 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- test "x$ncbi_cv_prog_cc_export_all" = "xno" || break
- done
- LDFLAGS=$orig_LDFLAGS
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_export_all" >&5
--echo "${ECHO_T}$ncbi_cv_prog_cc_export_all" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_export_all" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_cc_export_all" >&6; }
- test "$ncbi_cv_prog_cc_export_all" = no || \
- LDFLAGS="$ncbi_cv_prog_cc_export_all $LDFLAGS"
-- echo "$as_me:$LINENO: checking whether $CC supports -Wl,--{en,dis}able-new-dtags" >&5
--echo $ECHO_N "checking whether $CC supports -Wl,--{en,dis}able-new-dtags... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether $CC supports -Wl,--{en,dis}able-new-dtags" >&5
-+echo $ECHO_N "checking whether $CC supports -Wl,--{en,dis}able-new-dtags... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_cc_new_dtags+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -5225,24 +6307,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -5253,12 +6347,13 @@
-
- ncbi_cv_prog_cc_new_dtags=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LDFLAGS=$orig_LDFLAGS
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_new_dtags" >&5
--echo "${ECHO_T}$ncbi_cv_prog_cc_new_dtags" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_new_dtags" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_cc_new_dtags" >&6; }
- if test "$ncbi_cv_prog_cc_new_dtags" = yes; then
- if test "$with_hard_runpath" = yes; then
- LDFLAGS="-Wl,--disable-new-dtags $LDFLAGS"
-@@ -5269,45 +6364,231 @@
- ;;
- esac
-
--#### Provide default environment setup for known platforms/compilers
--DEPFLAGS="-M"
--DEPFLAGS_POST="" # Needed for VisualAge
--OBJCXX_CXXFLAGS=
--OBJCXX_LIBS=
--case "$host_os:$compiler" in
-- solaris2\.6:GCC )
-- echo "GCC compiler is not supported for: $host"
-- compiler=
-+case "$compiler:$compiler_version" in
-+ GCC:4[0-6]? | ICC:1[01]?? )
-+ ncbi_cv_prog_cxx_11=no
-+ ncbi_cv_prog_c_99=no
- ;;
--
-- solaris*:GCC )
-- CPPFLAGS="-D_XOPEN_SOURCE=500 $CPPFLAGS"
-- STRIP="@:"
-+ ICC:* )
-+ ncbi_cv_prog_c_99='-std=gnu99 -fgnu89-inline'
- ;;
-+esac
-
-- linux*:ICC )
-- # "incomplete type is not allowed" should be an error, not a warning!
-- CFLAGS="-we70 $CFLAGS"
-- CXXFLAGS="-we70 $CXXFLAGS"
-- case "$compiler_version" in
-- 1[1-9]?? ) MATH_LIBS=-Wl,-lm ;; # avoid static libimf in shared libs
-+{ echo "$as_me:$LINENO: checking how to enable C++ '11 features in $CXX" >&5
-+echo $ECHO_N "checking how to enable C++ '11 features in $CXX... $ECHO_C" >&6; }
-+if test "${ncbi_cv_prog_cxx_11+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ orig_CXX=$CXX
-+ ncbi_cv_prog_cxx_11=no
-+ for x in -std=gnu++11 -std=gnu++0x; do
-+ CXX="$orig_CXX $x"
-+ cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+
-+int
-+main ()
-+{
-+
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
- esac
-- ;;
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ncbi_cv_prog_cxx_11=$x
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-
-- irix*:GCC )
-- if test "$with_debug" != "no" ; then
-- LDFLAGS="-LD_LAYOUT:lgot_buffer=32 $LDFLAGS"
- fi
-- ;;
-
-- solaris*:WorkShop* )
-- CPPFLAGS="-D__EXTENSIONS__ $CPPFLAGS"
-- CXXFLAGS="+w +w2 $CXXFLAGS"
-- DEPFLAGS="-xM1"
-- LDFLAGS="-xildoff $LDFLAGS"
-- AR=${AR:="$CXX $MT_FLAG -xar -o"}
-- STRIP="@:"
-- if test "$with_symbols" = "no" -a "$with_profiling" != "yes" \
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+ test "x$ncbi_cv_prog_cxx_11" = "xno" || break
-+ done
-+ CXX=$orig_CXX
-+fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cxx_11" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_cxx_11" >&6; }
-+test "$ncbi_cv_prog_cxx_11" = no || CXX="$CXX $ncbi_cv_prog_cxx_11"
-+
-+ac_ext=c
-+ac_cpp='$CPP $CPPFLAGS'
-+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-+ac_compiler_gnu=$ac_cv_c_compiler_gnu
-+
-+
-+{ echo "$as_me:$LINENO: checking how to enable C '11 or at least '99 features in $CC" >&5
-+echo $ECHO_N "checking how to enable C '11 or at least '99 features in $CC... $ECHO_C" >&6; }
-+if test "${ncbi_cv_prog_c_99+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ orig_CC=$CC
-+ ncbi_cv_prog_c_99=no
-+ for x in -xc99=all "-std=gnu11 -fgnu89-inline" \
-+ "-std=gnu1x -fgnu89-inline" \
-+ "-std=gnu99 -fgnu89-inline" \
-+ "-std=gnu9x -fgnu89-inline"; do
-+ CC="$orig_CC $x"
-+ cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+
-+int
-+main ()
-+{
-+
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ncbi_cv_prog_c_99=$x
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+ test "x$ncbi_cv_prog_c_99" = "xno" || break
-+ done
-+ CC=$orig_CC
-+fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_c_99" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_c_99" >&6; }
-+ac_ext=cpp
-+ac_cpp='$CXXCPP $CPPFLAGS'
-+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-+
-+test "$ncbi_cv_prog_c_99" = no || CC="$CC $ncbi_cv_prog_c_99"
-+
-+#### Provide default environment setup for known platforms/compilers
-+DEPFLAGS="-M"
-+DEPFLAGS_POST="" # Needed for VisualAge
-+OBJCXX_CXXFLAGS=
-+OBJCXX_LIBS=
-+case "$host_os:$compiler" in
-+ solaris2\.6:GCC )
-+ echo "GCC compiler is not supported for: $host"
-+ compiler=
-+ ;;
-+
-+ solaris*:GCC )
-+ # On Solaris, GCC defaults to setting _XOPEN_SOURCE (to 500) only
-+ # in C++ mode. Set it for C code as well to ensure consistent
-+ # header behavior, taking care to match the C standard version
-+ # (as enforced by <sys/feature_tests.h>).
-+ case "$ncbi_cv_prog_c_99" in
-+ no) CC="$CC -D_XOPEN_SOURCE=500" ;;
-+ *) CC="$CC -D_XOPEN_SOURCE=600" ;;
-+ esac
-+
-+ STRIP="@:"
-+ ;;
-+
-+ linux*:ICC )
-+ # "incomplete type is not allowed" should be an error, not a warning!
-+ CFLAGS="-we70 $CFLAGS"
-+ CXXFLAGS="-we70 $CXXFLAGS"
-+ case "$compiler_version" in
-+ 1[1-9]?? ) MATH_LIBS=-Wl,-lm ;; # avoid static libimf in shared libs
-+ esac
-+ ;;
-+
-+ irix*:GCC )
-+ if test "$with_debug" != "no" ; then
-+ LDFLAGS="-LD_LAYOUT:lgot_buffer=32 $LDFLAGS"
-+ fi
-+ ;;
-+
-+ solaris*:WorkShop* )
-+ CPPFLAGS="-D__EXTENSIONS__ $CPPFLAGS"
-+ CXXFLAGS="+w +w2 $CXXFLAGS"
-+ DEPFLAGS="-xM1"
-+ LDFLAGS="-xildoff $LDFLAGS"
-+ AR=${AR:="$CXX $MT_FLAG -xar -o"}
-+ STRIP="@:"
-+ if test "$with_symbols" = "no" -a "$with_profiling" != "yes" \
- -a "$with_strip" = "yes" ; then
- LDFLAGS="-s $LDFLAGS"
- fi
-@@ -5424,11 +6705,19 @@
- LDFLAGS="-flat_namespace $LDFLAGS"
-
- if test "$with_ncbi_public" = yes; then
-+ sdks='/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk'
-+ case "$host_os" in
-+ darwin?.* | darwin10.* ) # Mac OS X 10.6.x or older
- TARGET='-mmacosx-version-min=10.5'
-- sdks='/Developer/SDKs/MacOSX10.6.sdk /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.6.sdk'
-+ sdks="/Developer/SDKs/MacOSX10.6.sdk"
- if test "$with_64:${with_universal-no}" != "yes:no"; then
- sdks="/Developer/SDKs/MacOSX10.5.sdk $sdks"
- fi
-+ ;;
-+ * )
-+ TARGET='-mmacosx-version-min=10.7'
-+ ;;
-+ esac
- for sdk in $sdks; do
- if test -d "$sdk"; then
- TARGET="-isysroot $sdk $TARGET"
-@@ -5494,7 +6783,7 @@
- echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
- * )
- echo "Do you still want to proceed (at your own risk)? [y/N]"
-- read answer
-+ read answer <& 7
- case "$answer" in
- [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
- echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
-@@ -5698,8 +6987,8 @@
- C_LIBS="$MATH_LIBS $C_LIBS"
-
- if test -n "$with_64"; then
-- echo "$as_me:$LINENO: checking whether this system supports --with(out)-64" >&5
--echo $ECHO_N "checking whether this system supports --with(out)-64... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether this system supports --with(out)-64" >&5
-+echo $ECHO_N "checking whether this system supports --with(out)-64... $ECHO_C" >&6; }
- if test "${ncbi_cv_sys_with64_ok+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -5720,24 +7009,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -5748,11 +7049,12 @@
-
- ncbi_cv_sys_with64_ok=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_sys_with64_ok" >&5
--echo "${ECHO_T}$ncbi_cv_sys_with64_ok" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_with64_ok" >&5
-+echo "${ECHO_T}$ncbi_cv_sys_with64_ok" >&6; }
- if test "$ncbi_cv_sys_with64_ok" = no; then
- { { echo "$as_me:$LINENO: error: cannot continue; please try different options" >&5
- echo "$as_me: error: cannot continue; please try different options" >&2;}
-@@ -5784,8 +7086,8 @@
- ;;
- GCC:* )
- DEF_FAST_FLAGS="-O3 -finline-functions -fstrict-aliasing"
-- case "$host_os" in
-- freebsd* ) ;;
-+ case "$host_os:$host_cpu:$compiler_version" in
-+ freebsd* | solaris*:*86*:* | *:4[5-9]? | *:[5-9]?? ) ;;
- * ) DEF_FAST_FLAGS="$DEF_FAST_FLAGS -ffast-math" ;;
- esac
- if test "$with_profiling" != "yes"; then
-@@ -5884,13 +7186,9 @@
- solaris* )
- CONF_f_runpath="-R"
- ;;
-- linux*:GCC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
-+ linux*:[GI]CC | *bsd*:GCC | cygwin*:GCC | osf*:GCC )
- CONF_f_runpath="-Wl,-rpath,"
- ;;
-- linux*:ICC )
-- # trying to use "-Wl,-rpath," here sends "ld" to endless 100% CPU loop
-- CONF_f_runpath="-Xlinker -rpath -Xlinker "
-- ;;
- irix*:* | linux*:KCC | *:Compaq )
- CONF_f_runpath="-rpath "
- ;;
-@@ -5995,8 +7293,11 @@
- LINK="$LINK -Kc++"
- ;;
- ICC:1???:* )
-- APP_LDFLAGS="-static-intel $APP_LDFLAGS"
-- DLL_LDFLAGS="-static-intel -nodefaultlibs $DLL_LDFLAGS"
-+ # Suppress "warning #10237: -lcilkrts linked in dynamically, static
-+ # library not available" which is not a problem in practice due to
-+ # as-needed linkage.
-+ APP_LDFLAGS="-static-intel -diag-disable 10237 $APP_LDFLAGS"
-+ DLL_LDFLAGS="-static-intel -diag-disable 10237 -nodefaultlibs $DLL_LDFLAGS"
- # Redundant for apps, but necessary for plugins to be adequately
- # self-contained, at least on 32-bit Linux.
- LIBS="$LIBS -lstdc++"
-@@ -6043,7 +7344,7 @@
- echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
- * )
- echo "Do you still want to try build DLLs (at your own risk)? [y/N]"
-- read answer
-+ read answer <& 7
- case "$answer" in
- [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
- echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
-@@ -6138,18 +7439,6 @@
-
- #### Intel compiler:: common flags and definitions
- if test "$compiler" = "ICC" ; then
-- if test -d /usr/local/gcc; then
-- case "$compiler_version:$HOST_CPU" in
-- *:i?86) v=4.4.5 ;;
-- ???:* | 1[01]??:* ) v=4.0.1 ;;
-- *) v=4.4.2 ;;
-- esac
-- gcc=/usr/local/gcc/$v/bin/gcc
-- if test -x $gcc; then
-- CC="$CC -gcc-name=$gcc"
-- CXX="$CXX -gcc-name=$gcc"
-- fi
-- fi
- if test -n "$icc_license" ; then
- icc_CC="$CC"
- icc_CXX="$CXX"
-@@ -6188,8 +7477,8 @@
- GCCPCH="#"
- if test "$compiler" = GCC -a "$with_pch" = "yes" \
- -a "${with_universal-no}" = "no"; then
-- echo "$as_me:$LINENO: checking whether $CXX supports precompiled headers" >&5
--echo $ECHO_N "checking whether $CXX supports precompiled headers... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether $CXX supports precompiled headers" >&5
-+echo $ECHO_N "checking whether $CXX supports precompiled headers... $ECHO_C" >&6; }
- if test "${ncbi_cv_cxx_pch+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6202,8 +7491,8 @@
- ncbi_cv_cxx_pch=no
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_cxx_pch" >&5
--echo "${ECHO_T}$ncbi_cv_cxx_pch" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_cxx_pch" >&5
-+echo "${ECHO_T}$ncbi_cv_cxx_pch" >&6; }
- if test "$ncbi_cv_cxx_pch" = "yes"; then
- if test "$Rules" = "rules"; then
- { echo "$as_me:$LINENO: WARNING: Your version of make does not fully support PCH-related dependencies." >&5
-@@ -6216,22 +7505,22 @@
-
-
- #### Tools
--echo "$as_me:$LINENO: checking whether ln -s works" >&5
--echo $ECHO_N "checking whether ln -s works... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether ln -s works" >&5
-+echo $ECHO_N "checking whether ln -s works... $ECHO_C" >&6; }
- LN_S=$as_ln_s
- if test "$LN_S" = "ln -s"; then
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
- else
-- echo "$as_me:$LINENO: result: no, using $LN_S" >&5
--echo "${ECHO_T}no, using $LN_S" >&6
-+ { echo "$as_me:$LINENO: result: no, using $LN_S" >&5
-+echo "${ECHO_T}no, using $LN_S" >&6; }
- fi
-
- if test -n "$ac_tool_prefix"; then
- # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
- set dummy ${ac_tool_prefix}ranlib; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_RANLIB+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6244,32 +7533,34 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- RANLIB=$ac_cv_prog_RANLIB
- if test -n "$RANLIB"; then
-- echo "$as_me:$LINENO: result: $RANLIB" >&5
--echo "${ECHO_T}$RANLIB" >&6
-+ { echo "$as_me:$LINENO: result: $RANLIB" >&5
-+echo "${ECHO_T}$RANLIB" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- fi
- if test -z "$ac_cv_prog_RANLIB"; then
- ac_ct_RANLIB=$RANLIB
- # Extract the first word of "ranlib", so it can be a program name with args.
- set dummy ranlib; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6282,35 +7573,49 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_ac_ct_RANLIB="ranlib"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
-- test -z "$ac_cv_prog_ac_ct_RANLIB" && ac_cv_prog_ac_ct_RANLIB=":"
- fi
- fi
- ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
- if test -n "$ac_ct_RANLIB"; then
-- echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
--echo "${ECHO_T}$ac_ct_RANLIB" >&6
-+ { echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
-+echo "${ECHO_T}$ac_ct_RANLIB" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+ if test "x$ac_ct_RANLIB" = x; then
-+ RANLIB=":"
-+ else
-+ case $cross_compiling:$ac_tool_warned in
-+yes:)
-+{ echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&5
-+echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
-+whose name does not start with the host triplet. If you think this
-+configuration is useful to you, please write to autoconf@gnu.org." >&2;}
-+ac_tool_warned=yes ;;
-+esac
- RANLIB=$ac_ct_RANLIB
-+ fi
- else
- RANLIB="$ac_cv_prog_RANLIB"
- fi
-
- # Extract the first word of "ar", so it can be a program name with args.
- set dummy ar; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_AR+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6323,29 +7628,31 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_AR="ar cr"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- test -z "$ac_cv_prog_AR" && ac_cv_prog_AR="ErrorCannotFind_AR"
- fi
- fi
- AR=$ac_cv_prog_AR
- if test -n "$AR"; then
-- echo "$as_me:$LINENO: result: $AR" >&5
--echo "${ECHO_T}$AR" >&6
-+ { echo "$as_me:$LINENO: result: $AR" >&5
-+echo "${ECHO_T}$AR" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test "x$RANLIB" != "x:"; then
-- echo "$as_me:$LINENO: checking ranlib's effectiveness" >&5
--echo $ECHO_N "checking ranlib's effectiveness... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking ranlib's effectiveness" >&5
-+echo $ECHO_N "checking ranlib's effectiveness... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_ranlib_effect+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6379,24 +7686,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -6407,7 +7726,8 @@
-
- ok_without=false
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- echo $RANLIB conftest.a >&5
- $RANLIB conftest.a >&5
-@@ -6427,24 +7747,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -6455,7 +7787,8 @@
-
- ok_with=false
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$save_LIBS
- case $ok_with:$ok_without in
-@@ -6466,8 +7799,8 @@
- esac
-
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_ranlib_effect" >&5
--echo "${ECHO_T}$ncbi_cv_prog_ranlib_effect" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_ranlib_effect" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_ranlib_effect" >&6; }
- case "$ncbi_cv_prog_ranlib_effect" in
- negative) RANLIB=: ;;
- unknown)
-@@ -6479,8 +7812,8 @@
- if test "$with_strip" = yes; then
- # Extract the first word of "strip", so it can be a program name with args.
- set dummy strip; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_STRIP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6493,28 +7826,30 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_STRIP="strip"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- test -z "$ac_cv_prog_STRIP" && ac_cv_prog_STRIP="@:"
- fi
- fi
- STRIP=$ac_cv_prog_STRIP
- if test -n "$STRIP"; then
-- echo "$as_me:$LINENO: result: $STRIP" >&5
--echo "${ECHO_T}$STRIP" >&6
-+ { echo "$as_me:$LINENO: result: $STRIP" >&5
-+echo "${ECHO_T}$STRIP" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-- echo "$as_me:$LINENO: checking whether strip loses runtime type information" >&5
--echo $ECHO_N "checking whether strip loses runtime type information... $ECHO_C" >&6
-+
-+ { echo "$as_me:$LINENO: checking whether strip loses runtime type information" >&5
-+echo $ECHO_N "checking whether strip loses runtime type information... $ECHO_C" >&6; }
- if test "${ncbi_cv_strip_loses_rtti+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6555,8 +7890,8 @@
- rm -rf conftest*
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_strip_loses_rtti" >&5
--echo "${ECHO_T}$ncbi_cv_strip_loses_rtti" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_strip_loses_rtti" >&5
-+echo "${ECHO_T}$ncbi_cv_strip_loses_rtti" >&6; }
- if test "$ncbi_cv_strip_loses_rtti" = "yes"; then
- case "$with_caution" in
- yes )
-@@ -6568,7 +7903,7 @@
- echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
- * )
- echo "Do you still want to proceed (at your own risk)? [y/N]"
-- read answer
-+ read answer <& 7
- case "$answer" in
- [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
- echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
-@@ -6595,8 +7930,8 @@
- if test "$with_distcc" = "yes" ; then
- # Extract the first word of "distcc", so it can be a program name with args.
- set dummy distcc; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_DISTCC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6609,25 +7944,27 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_DISTCC="distcc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- DISTCC=$ac_cv_prog_DISTCC
- if test -n "$DISTCC"; then
-- echo "$as_me:$LINENO: result: $DISTCC" >&5
--echo "${ECHO_T}$DISTCC" >&6
-+ { echo "$as_me:$LINENO: result: $DISTCC" >&5
-+echo "${ECHO_T}$DISTCC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -n "$DISTCC" ; then
- # Test distcc reasonably thoroughly to avoid possible gotchas.
- cat > distcctest.c << EOF
-@@ -6640,8 +7977,8 @@
- EOF
- DISTCC_FALLBACK=0
- export DISTCC_FALLBACK
-- echo "$as_me:$LINENO: checking whether any distcc servers are available" >&5
--echo $ECHO_N "checking whether any distcc servers are available... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether any distcc servers are available" >&5
-+echo $ECHO_N "checking whether any distcc servers are available... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_distcc_servers+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6660,14 +7997,14 @@
- ncbi_cv_prog_distcc_servers=yes ;;
- esac
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_servers" >&5
--echo "${ECHO_T}$ncbi_cv_prog_distcc_servers" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_servers" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_distcc_servers" >&6; }
- if test "$ncbi_cv_prog_distcc_servers" = no; then
- $as_unset DISTCC || test "${DISTCC+set}" != set || { DISTCC=; export DISTCC; }
- fi
- if test -n "$DISTCC" ; then
-- echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CC" >&5
--echo $ECHO_N "checking whether $DISTCC is compatible with $CC... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CC" >&5
-+echo $ECHO_N "checking whether $DISTCC is compatible with $CC... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_distcc_vs_cc+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6677,8 +8014,8 @@
- ncbi_cv_prog_distcc_vs_cc=no
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cc" >&5
--echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cc" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cc" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cc" >&6; }
- if test "$ncbi_cv_prog_distcc_vs_cc" = yes; then
- CC_WRAPPER="$DISTCC $CC_WRAPPER"
- else
-@@ -6686,8 +8023,8 @@
- fi
- fi
- if test -n "$DISTCC" ; then
-- echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CXX" >&5
--echo $ECHO_N "checking whether $DISTCC is compatible with $CXX... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether $DISTCC is compatible with $CXX" >&5
-+echo $ECHO_N "checking whether $DISTCC is compatible with $CXX... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_distcc_vs_cxx+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6698,8 +8035,8 @@
- ncbi_cv_prog_distcc_vs_cxx=no
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cxx" >&5
--echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cxx" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_distcc_vs_cxx" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_distcc_vs_cxx" >&6; }
- if test "$ncbi_cv_prog_distcc_vs_cxx" = yes; then
- CXX_WRAPPER="$DISTCC $CXX_WRAPPER"
- else
-@@ -6725,8 +8062,8 @@
- if test "$with_ccache" != "no"; then
- # Extract the first word of "ccache", so it can be a program name with args.
- set dummy ccache; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_CCACHE+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6739,25 +8076,27 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_CCACHE="ccache"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- CCACHE=$ac_cv_prog_CCACHE
- if test -n "$CCACHE"; then
-- echo "$as_me:$LINENO: result: $CCACHE" >&5
--echo "${ECHO_T}$CCACHE" >&6
-+ { echo "$as_me:$LINENO: result: $CCACHE" >&5
-+echo "${ECHO_T}$CCACHE" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -n "$CCACHE" ; then
- if test -n "$CC_WRAPPER"; then
- CC_WRAPPER="CCACHE_PREFIX=$CC_WRAPPER $CCACHE"
-@@ -6778,8 +8117,8 @@
- # Note the path, since syntax is version-specific....
- # Extract the first word of "tail", so it can be a program name with args.
- set dummy tail; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_TAIL+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6794,43 +8133,44 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_TAIL="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- TAIL=$ac_cv_path_TAIL
--
- if test -n "$TAIL"; then
-- echo "$as_me:$LINENO: result: $TAIL" >&5
--echo "${ECHO_T}$TAIL" >&6
-+ { echo "$as_me:$LINENO: result: $TAIL" >&5
-+echo "${ECHO_T}$TAIL" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
--echo "$as_me:$LINENO: checking whether $TAIL accepts modern syntax (-n N)" >&5
--echo $ECHO_N "checking whether $TAIL accepts modern syntax (-n N)... $ECHO_C" >&6
-+
-+{ echo "$as_me:$LINENO: checking whether $TAIL accepts modern syntax (-n N)" >&5
-+echo $ECHO_N "checking whether $TAIL accepts modern syntax (-n N)... $ECHO_C" >&6; }
- if $TAIL -n 1 config.log >/dev/null 2>&1; then
- TAIL_N="$TAIL -n "
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
- else
- TAIL_N="$TAIL -"
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
- # Extract the first word of "touch", so it can be a program name with args.
- set dummy touch; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_TOUCH+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6846,44 +8186,192 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_TOUCH="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- TOUCH=$ac_cv_path_TOUCH
--
- if test -n "$TOUCH"; then
-- echo "$as_me:$LINENO: result: $TOUCH" >&5
--echo "${ECHO_T}$TOUCH" >&6
-+ { echo "$as_me:$LINENO: result: $TOUCH" >&5
-+echo "${ECHO_T}$TOUCH" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+fi
-+
-+
-+{ echo "$as_me:$LINENO: checking for grep that handles long lines and -e" >&5
-+echo $ECHO_N "checking for grep that handles long lines and -e... $ECHO_C" >&6; }
-+if test "${ac_cv_path_GREP+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ # Extract the first word of "grep ggrep" to use in msg output
-+if test -z "$GREP"; then
-+set dummy grep ggrep; ac_prog_name=$2
-+if test "${ac_cv_path_GREP+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_path_GREP_found=false
-+# Loop through the user's path and test for each of PROGNAME-LIST
-+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_prog in grep ggrep; do
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext"
-+ { test -f "$ac_path_GREP" && $as_executable_p "$ac_path_GREP"; } || continue
-+ # Check for GNU ac_path_GREP and select it if it is found.
-+ # Check for GNU $ac_path_GREP
-+case `"$ac_path_GREP" --version 2>&1` in
-+*GNU*)
-+ ac_cv_path_GREP="$ac_path_GREP" ac_path_GREP_found=:;;
-+*)
-+ ac_count=0
-+ echo $ECHO_N "0123456789$ECHO_C" >"conftest.in"
-+ while :
-+ do
-+ cat "conftest.in" "conftest.in" >"conftest.tmp"
-+ mv "conftest.tmp" "conftest.in"
-+ cp "conftest.in" "conftest.nl"
-+ echo 'GREP' >> "conftest.nl"
-+ "$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break
-+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
-+ ac_count=`expr $ac_count + 1`
-+ if test $ac_count -gt ${ac_path_GREP_max-0}; then
-+ # Best one so far, save it but keep looking for a better one
-+ ac_cv_path_GREP="$ac_path_GREP"
-+ ac_path_GREP_max=$ac_count
-+ fi
-+ # 10*(2^10) chars as input seems more than enough
-+ test $ac_count -gt 10 && break
-+ done
-+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
-+esac
-+
-+
-+ $ac_path_GREP_found && break 3
-+ done
-+done
-+
-+done
-+IFS=$as_save_IFS
-+
-+
-+fi
-+
-+GREP="$ac_cv_path_GREP"
-+if test -z "$GREP"; then
-+ { { echo "$as_me:$LINENO: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
-+echo "$as_me: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
-+ { (exit 1); exit 1; }; }
-+fi
-+
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ ac_cv_path_GREP=$GREP
-+fi
-+
-+
- fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_path_GREP" >&5
-+echo "${ECHO_T}$ac_cv_path_GREP" >&6; }
-+ GREP="$ac_cv_path_GREP"
-
--echo "$as_me:$LINENO: checking for egrep" >&5
--echo $ECHO_N "checking for egrep... $ECHO_C" >&6
--if test "${ac_cv_prog_egrep+set}" = set; then
-+
-+{ echo "$as_me:$LINENO: checking for egrep" >&5
-+echo $ECHO_N "checking for egrep... $ECHO_C" >&6; }
-+if test "${ac_cv_path_EGREP+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ if echo a | $GREP -E '(a|b)' >/dev/null 2>&1
-+ then ac_cv_path_EGREP="$GREP -E"
-+ else
-+ # Extract the first word of "egrep" to use in msg output
-+if test -z "$EGREP"; then
-+set dummy egrep; ac_prog_name=$2
-+if test "${ac_cv_path_EGREP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- if echo a | (grep -E '(a|b)') >/dev/null 2>&1
-- then ac_cv_prog_egrep='grep -E'
-- else ac_cv_prog_egrep='egrep'
-+ ac_path_EGREP_found=false
-+# Loop through the user's path and test for each of PROGNAME-LIST
-+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_prog in egrep; do
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext"
-+ { test -f "$ac_path_EGREP" && $as_executable_p "$ac_path_EGREP"; } || continue
-+ # Check for GNU ac_path_EGREP and select it if it is found.
-+ # Check for GNU $ac_path_EGREP
-+case `"$ac_path_EGREP" --version 2>&1` in
-+*GNU*)
-+ ac_cv_path_EGREP="$ac_path_EGREP" ac_path_EGREP_found=:;;
-+*)
-+ ac_count=0
-+ echo $ECHO_N "0123456789$ECHO_C" >"conftest.in"
-+ while :
-+ do
-+ cat "conftest.in" "conftest.in" >"conftest.tmp"
-+ mv "conftest.tmp" "conftest.in"
-+ cp "conftest.in" "conftest.nl"
-+ echo 'EGREP' >> "conftest.nl"
-+ "$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break
-+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
-+ ac_count=`expr $ac_count + 1`
-+ if test $ac_count -gt ${ac_path_EGREP_max-0}; then
-+ # Best one so far, save it but keep looking for a better one
-+ ac_cv_path_EGREP="$ac_path_EGREP"
-+ ac_path_EGREP_max=$ac_count
-+ fi
-+ # 10*(2^10) chars as input seems more than enough
-+ test $ac_count -gt 10 && break
-+ done
-+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
-+esac
-+
-+
-+ $ac_path_EGREP_found && break 3
-+ done
-+done
-+
-+done
-+IFS=$as_save_IFS
-+
-+
-+fi
-+
-+EGREP="$ac_cv_path_EGREP"
-+if test -z "$EGREP"; then
-+ { { echo "$as_me:$LINENO: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
-+echo "$as_me: error: no acceptable $ac_prog_name could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
-+ { (exit 1); exit 1; }; }
-+fi
-+
-+else
-+ ac_cv_path_EGREP=$EGREP
-+fi
-+
-+
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_prog_egrep" >&5
--echo "${ECHO_T}$ac_cv_prog_egrep" >&6
-- EGREP=$ac_cv_prog_egrep
-+{ echo "$as_me:$LINENO: result: $ac_cv_path_EGREP" >&5
-+echo "${ECHO_T}$ac_cv_path_EGREP" >&6; }
-+ EGREP="$ac_cv_path_EGREP"
-
-
--echo "$as_me:$LINENO: checking how to run $EGREP quietly" >&5
--echo $ECHO_N "checking how to run $EGREP quietly... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking how to run $EGREP quietly" >&5
-+echo $ECHO_N "checking how to run $EGREP quietly... $ECHO_C" >&6; }
- if test -z "`echo foo | $EGREP -q fo+ 2>>config.log || echo $?`"; then
- EGREP_Q="$EGREP -q"
- elif test -z "`echo foo | $EGREP -s fo+ 2>>config.log || echo $?`"; then
-@@ -6891,13 +8379,13 @@
- else
- EGREP_Q=">/dev/null $EGREP"
- fi
--echo "$as_me:$LINENO: result: $EGREP_Q" >&5
--echo "${ECHO_T}$EGREP_Q" >&6
-+{ echo "$as_me:$LINENO: result: $EGREP_Q" >&5
-+echo "${ECHO_T}$EGREP_Q" >&6; }
-
- # Extract the first word of "valgrind", so it can be a program name with args.
- set dummy valgrind; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_prog_VALGRIND_PATH+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -6910,26 +8398,80 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_VALGRIND_PATH="valgrind"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- fi
- fi
- VALGRIND_PATH=$ac_cv_prog_VALGRIND_PATH
- if test -n "$VALGRIND_PATH"; then
-- echo "$as_me:$LINENO: result: $VALGRIND_PATH" >&5
--echo "${ECHO_T}$VALGRIND_PATH" >&6
-+ { echo "$as_me:$LINENO: result: $VALGRIND_PATH" >&5
-+echo "${ECHO_T}$VALGRIND_PATH" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+fi
-+
-+
-+
-+# Extract the first word of "ldd", so it can be a program name with args.
-+set dummy ldd; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_LDD+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ case $LDD in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_LDD="$LDD" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+for as_dir in $PATH
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_LDD="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
-+done
-+done
-+IFS=$as_save_IFS
-+
-+ ;;
-+esac
-+fi
-+LDD=$ac_cv_path_LDD
-+if test -n "$LDD"; then
-+ { echo "$as_me:$LINENO: result: $LDD" >&5
-+echo "${ECHO_T}$LDD" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-
-+if test -n "$LDD"; then
-+ { echo "$as_me:$LINENO: checking whether $LDD accepts -r" >&5
-+echo $ECHO_N "checking whether $LDD accepts -r... $ECHO_C" >&6; }
-+ if $LDD -r /bin/ls >/dev/null 2>&1; then
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
-+ LDD_R="$LDD -r"
-+ else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+ fi
-+fi
-
- #### Check if "${build_root}" is defined; provide a default one
- if test -n "${with_build_root}" ; then
-@@ -7014,22 +8556,14 @@
- fi
-
-
--### Should go before any test compiler runs
--
--cat >>confdefs.h <<\_ACEOF
--#define _GNU_SOURCE 1
--_ACEOF
--
--
--
- #### Determine whether this is implicitly a 64-bit platform
--ac_ext=cc
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
- ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
--echo "$as_me:$LINENO: checking how to run the C++ preprocessor" >&5
--echo $ECHO_N "checking how to run the C++ preprocessor... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking how to run the C++ preprocessor" >&5
-+echo $ECHO_N "checking how to run the C++ preprocessor... $ECHO_C" >&6; }
- if test -z "$CXXCPP"; then
- if test "${ac_cv_prog_CXXCPP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-@@ -7059,8 +8593,13 @@
- #endif
- Syntax error
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -7085,9 +8624,10 @@
- # Broken: fails on valid input.
- continue
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
-- # OK, works on sane cases. Now check whether non-existent headers
-+ # OK, works on sane cases. Now check whether nonexistent headers
- # can be detected and how.
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -7097,8 +8637,13 @@
- /* end confdefs.h. */
- #include <ac_nonexistent.h>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -7125,6 +8670,7 @@
- ac_preproc_ok=:
- break
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
- done
-@@ -7142,8 +8688,8 @@
- else
- ac_cv_prog_CXXCPP=$CXXCPP
- fi
--echo "$as_me:$LINENO: result: $CXXCPP" >&5
--echo "${ECHO_T}$CXXCPP" >&6
-+{ echo "$as_me:$LINENO: result: $CXXCPP" >&5
-+echo "${ECHO_T}$CXXCPP" >&6; }
- ac_preproc_ok=false
- for ac_cxx_preproc_warn_flag in '' yes
- do
-@@ -7166,8 +8712,13 @@
- #endif
- Syntax error
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -7192,9 +8743,10 @@
- # Broken: fails on valid input.
- continue
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
-- # OK, works on sane cases. Now check whether non-existent headers
-+ # OK, works on sane cases. Now check whether nonexistent headers
- # can be detected and how.
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -7204,8 +8756,13 @@
- /* end confdefs.h. */
- #include <ac_nonexistent.h>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -7232,6 +8789,7 @@
- ac_preproc_ok=:
- break
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
- done
-@@ -7247,15 +8805,15 @@
- { (exit 1); exit 1; }; }
- fi
-
--ac_ext=cc
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
- ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-
--echo "$as_me:$LINENO: checking for ANSI C header files" >&5
--echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for ANSI C header files" >&5
-+echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6; }
- if test "${ac_cv_header_stdc+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -7279,24 +8837,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7307,7 +8877,8 @@
-
- ac_cv_header_stdc=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-
- if test $ac_cv_header_stdc = yes; then
- # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
-@@ -7363,6 +8934,7 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- #include <ctype.h>
-+#include <stdlib.h>
- #if ((' ' & 0x0FF) == 0x020)
- # define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
- # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
-@@ -7382,18 +8954,27 @@
- for (i = 0; i < 256; i++)
- if (XOR (islower (i), ISLOWER (i))
- || toupper (i) != TOUPPER (i))
-- exit(2);
-- exit (0);
-+ return 2;
-+ return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7406,12 +8987,14 @@
- ( exit $ac_status )
- ac_cv_header_stdc=no
- fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
-+
-+
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
--echo "${ECHO_T}$ac_cv_header_stdc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
-+echo "${ECHO_T}$ac_cv_header_stdc" >&6; }
- if test $ac_cv_header_stdc = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -7434,9 +9017,9 @@
- inttypes.h stdint.h unistd.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -7450,24 +9033,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7478,10 +9073,12 @@
-
- eval "$as_ac_Header=no"
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
-@@ -7492,8 +9089,8 @@
- done
-
-
--echo "$as_me:$LINENO: checking for size_t" >&5
--echo $ECHO_N "checking for size_t... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for size_t" >&5
-+echo $ECHO_N "checking for size_t... $ECHO_C" >&6; }
- if test "${ac_cv_type_size_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -7504,36 +9101,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef size_t ac__type_new_;
- int
- main ()
- {
--if ((size_t *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (size_t))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7544,23 +9154,24 @@
-
- ac_cv_type_size_t=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
--echo "${ECHO_T}$ac_cv_type_size_t" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
-+echo "${ECHO_T}$ac_cv_type_size_t" >&6; }
- if test $ac_cv_type_size_t = yes; then
- :
- else
-
- cat >>confdefs.h <<_ACEOF
--#define size_t unsigned
-+#define size_t unsigned int
- _ACEOF
-
- fi
-
- if test "${with_universal-no}" = "no"; then
-- echo "$as_me:$LINENO: checking for size_t" >&5
--echo $ECHO_N "checking for size_t... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for size_t" >&5
-+echo $ECHO_N "checking for size_t... $ECHO_C" >&6; }
- if test "${ac_cv_type_size_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -7571,36 +9182,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef size_t ac__type_new_;
- int
- main ()
- {
--if ((size_t *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (size_t))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7611,18 +9235,19 @@
-
- ac_cv_type_size_t=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
--echo "${ECHO_T}$ac_cv_type_size_t" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
-+echo "${ECHO_T}$ac_cv_type_size_t" >&6; }
-
--echo "$as_me:$LINENO: checking size of size_t" >&5
--echo $ECHO_N "checking size of size_t... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of size_t" >&5
-+echo $ECHO_N "checking size of size_t... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_size_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_size_t" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -7635,10 +9260,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef size_t ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (size_t))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -7646,24 +9272,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7676,10 +9314,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef size_t ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (size_t))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -7687,24 +9326,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7720,7 +9371,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -7733,10 +9385,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef size_t ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (size_t))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -7744,24 +9397,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7774,10 +9439,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef size_t ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (size_t))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -7785,24 +9451,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7818,7 +9496,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -7826,9 +9505,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -7839,10 +9520,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef size_t ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (size_t))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -7850,24 +9532,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7878,24 +9572,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_size_t=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (size_t), 77
-+echo "$as_me: error: cannot compute sizeof (size_t)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -7903,8 +9591,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (size_t)); }
--unsigned long ulongval () { return (long) (sizeof (size_t)); }
-+ typedef size_t ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -7913,35 +9602,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (size_t))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (size_t))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (size_t))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -7952,22 +9650,21 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (size_t)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (size_t), 77
-+echo "$as_me: error: cannot compute sizeof (size_t)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_size_t=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_size_t" >&5
--echo "${ECHO_T}$ac_cv_sizeof_size_t" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_size_t" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_size_t" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_SIZE_T $ac_cv_sizeof_size_t
- _ACEOF
-@@ -8006,8 +9703,8 @@
- fi
- # Extract the first word of "tcheck_cl", so it can be a program name with args.
- set dummy tcheck_cl; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_TCHECK_CL+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -8023,27 +9720,28 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_TCHECK_CL="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- TCHECK_CL=$ac_cv_path_TCHECK_CL
--
- if test -n "$TCHECK_CL"; then
-- echo "$as_me:$LINENO: result: $TCHECK_CL" >&5
--echo "${ECHO_T}$TCHECK_CL" >&6
-+ { echo "$as_me:$LINENO: result: $TCHECK_CL" >&5
-+echo "${ECHO_T}$TCHECK_CL" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -n "$TCHECK_CL"; then
- CFLAGS="$CFLAGS -tcheck -O0"
- CXXFLAGS="$CXXFLAGS -tcheck -O0"
-@@ -8098,8 +9796,8 @@
- #### Try to find a version of pwd that yields /net paths.
- # Extract the first word of "amq", so it can be a program name with args.
- set dummy amq; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_AMQ+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -8115,31 +9813,32 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_AMQ="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- AMQ=$ac_cv_path_AMQ
--
- if test -n "$AMQ"; then
-- echo "$as_me:$LINENO: result: $AMQ" >&5
--echo "${ECHO_T}$AMQ" >&6
-+ { echo "$as_me:$LINENO: result: $AMQ" >&5
-+echo "${ECHO_T}$AMQ" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- case "$AMQ" in
- */amq)
-- echo "$as_me:$LINENO: checking whether $AMQ -w works" >&5
--echo $ECHO_N "checking whether $AMQ -w works... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether $AMQ -w works" >&5
-+echo $ECHO_N "checking whether $AMQ -w works... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_amq_w+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -8149,8 +9848,8 @@
- ncbi_cv_prog_amq_w=no
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_amq_w" >&5
--echo "${ECHO_T}$ncbi_cv_prog_amq_w" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_amq_w" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_amq_w" >&6; }
- if test "$ncbi_cv_prog_amq_w" = yes; then
- smart_pwd="$AMQ -w"
- else
-@@ -8261,7 +9960,7 @@
- fi
- ;;
- *:ICC )
-- runpath="$runpath -Xlinker -rpath-link -Xlinker \$(libdir)"
-+ runpath="$runpath -Wl,-rpath-link,\$(libdir)"
- ;;
- esac
- elif test "$with_runpath" = "yes" -o "$with_dll" != "no" ; then
-@@ -8338,8 +10037,8 @@
- FORBID_UNDEF='-Wl,-error_unresolved'
- ;;
- esac
-- echo "$as_me:$LINENO: checking whether $CC supports -Wl,--no-allow-shlib-undefined" >&5
--echo $ECHO_N "checking whether $CC supports -Wl,--no-allow-shlib-undefined... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether $CC supports -Wl,--no-allow-shlib-undefined" >&5
-+echo $ECHO_N "checking whether $CC supports -Wl,--no-allow-shlib-undefined... $ECHO_C" >&6; }
- if test "${ncbi_cv_prog_cc_wl_no_asu+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -8361,24 +10060,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -8389,12 +10100,13 @@
-
- ncbi_cv_prog_cc_wl_no_asu=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LDFLAGS=$orig_LDFLAGS
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_no_asu" >&5
--echo "${ECHO_T}$ncbi_cv_prog_cc_wl_no_asu" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_prog_cc_wl_no_asu" >&5
-+echo "${ECHO_T}$ncbi_cv_prog_cc_wl_no_asu" >&6; }
- if test "$ncbi_cv_prog_cc_wl_no_asu" = yes; then
- FORBID_UNDEF="$FORBID_UNDEF -Wl,--no-allow-shlib-undefined"
- fi
-@@ -8481,8 +10193,8 @@
- ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
- ac_compiler_gnu=$ac_cv_c_compiler_gnu
--echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
--echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
-+echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6; }
- # On Suns, sometimes $CPP names a directory.
- if test -n "$CPP" && test -d "$CPP"; then
- CPP=
-@@ -8516,8 +10228,13 @@
- #endif
- Syntax error
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -8542,9 +10259,10 @@
- # Broken: fails on valid input.
- continue
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
-- # OK, works on sane cases. Now check whether non-existent headers
-+ # OK, works on sane cases. Now check whether nonexistent headers
- # can be detected and how.
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -8554,8 +10272,13 @@
- /* end confdefs.h. */
- #include <ac_nonexistent.h>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -8582,6 +10305,7 @@
- ac_preproc_ok=:
- break
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
- done
-@@ -8599,8 +10323,8 @@
- else
- ac_cv_prog_CPP=$CPP
- fi
--echo "$as_me:$LINENO: result: $CPP" >&5
--echo "${ECHO_T}$CPP" >&6
-+{ echo "$as_me:$LINENO: result: $CPP" >&5
-+echo "${ECHO_T}$CPP" >&6; }
- ac_preproc_ok=false
- for ac_c_preproc_warn_flag in '' yes
- do
-@@ -8623,8 +10347,13 @@
- #endif
- Syntax error
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -8649,9 +10378,10 @@
- # Broken: fails on valid input.
- continue
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
-- # OK, works on sane cases. Now check whether non-existent headers
-+ # OK, works on sane cases. Now check whether nonexistent headers
- # can be detected and how.
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -8661,8 +10391,13 @@
- /* end confdefs.h. */
- #include <ac_nonexistent.h>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -8689,6 +10424,7 @@
- ac_preproc_ok=:
- break
- fi
-+
- rm -f conftest.err conftest.$ac_ext
-
- done
-@@ -8704,7 +10440,7 @@
- { (exit 1); exit 1; }; }
- fi
-
--ac_ext=cc
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-@@ -8898,7 +10634,7 @@
- echo "$as_me: WARNING: Proceeding without questions per --without-caution" >&2;} ;;
- * )
- echo "Do you want to re-configure in \"${builddir}\"? [y/N]"
-- read answer
-+ read answer <& 7
- case "$answer" in
- [Yy]* ) { echo "$as_me:$LINENO: WARNING: Proceeding at your own risk..." >&5
- echo "$as_me: WARNING: Proceeding at your own risk..." >&2;} ;;
-@@ -8939,8 +10675,8 @@
- BINCOPY="cp -p"
- MAC_BINCOPY="/Developer/Tools/CpMac -p"
- if test "$with_bincopy" != "yes"; then
-- echo "$as_me:$LINENO: checking whether cross-directory hard links work" >&5
--echo $ECHO_N "checking whether cross-directory hard links work... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether cross-directory hard links work" >&5
-+echo $ECHO_N "checking whether cross-directory hard links work... $ECHO_C" >&6; }
- if test "${ncbi_cv_sys_xdir_ln+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -8953,8 +10689,8 @@
- fi
- rm -rf conftestdir conftestfile
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_sys_xdir_ln" >&5
--echo "${ECHO_T}$ncbi_cv_sys_xdir_ln" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_xdir_ln" >&5
-+echo "${ECHO_T}$ncbi_cv_sys_xdir_ln" >&6; }
- if test "$ncbi_cv_sys_xdir_ln" = "yes"; then
- BINCOPY="ln -f"
- MAC_BINCOPY="\$(top_srcdir)/scripts/common/impl/ln_mac.sh"
-@@ -8999,15 +10735,30 @@
- dbgrx1="$wsrx-g[^cx$wschars]*$wsrx"
- dbgrx2="$wsrx-gx*coff[0-9+]*$wsrx"
- optrx="$wsrx-x*O[0-9s]*$wsrx"
-+ NDEB_CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-+ NDEB_CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-+ NDEB_LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
- if test "$with_symbols" = "no" ; then
-- CFLAGS=` echo " $CFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-- CXXFLAGS=`echo " $CXXFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-- LDFLAGS=` echo " $LDFLAGS " | sed "s/$dbgrx1/ /g; s/$dbgrx2/ /g"`
-+ CFLAGS=$NDEB_CFLAGS
-+ CXXFLAGS=$NDEB_CXXFLAGS
-+ LDFLAGS=$NDEB_LDFLAGS
- else
- echo " $CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || CFLAGS="$CFLAGS -g"
- echo " $CXXFLAGS "| $EGREP_Q "$dbgrx1|$dbgrx2" || CXXFLAGS="$CXXFLAGS -g"
- echo " $LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || LDFLAGS="$LDFLAGS -g"
- STRIP="@:"
-+ case "$compiler:$compiler_version" in
-+ GCC:4[89]? | GCC:[5-9]? | GCC:???? )
-+ # GCC 4.8 defaults to DWARF 4, which Totalview for one
-+ # can't handle; roll back to version 3 by default.
-+ echo " $USER_CFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
-+ CFLAGS="$NDEB_CFLAGS -gdwarf-3"
-+ echo " $USER_CXXFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
-+ CXXFLAGS="$NDEB_CXXFLAGS -gdwarf-3"
-+ echo " $USER_LDFLAGS " | $EGREP_Q "$dbgrx1|$dbgrx2" || \
-+ LDFLAGS="$NDEB_LDFLAGS -gdwarf-3"
-+ ;;
-+ esac
- fi
-
- NOPT_CFLAGS=` echo " $CFLAGS " | sed "s/$optrx/ /g"`
-@@ -9056,18 +10807,19 @@
- for ac_header in iostream iostream.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9078,24 +10830,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -9106,13 +10870,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9121,8 +10886,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -9146,9 +10916,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -9172,25 +10943,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -9207,18 +10977,19 @@
- for ac_header in fstream fstream.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9229,24 +11000,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -9257,13 +11040,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9272,8 +11056,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -9297,9 +11086,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -9323,25 +11113,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -9359,18 +11148,19 @@
- for ac_header in strstream strstream.h strstrea.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9381,24 +11171,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -9409,13 +11211,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9424,8 +11227,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -9449,9 +11257,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -9475,25 +11284,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -9511,18 +11319,19 @@
- for ac_header in inttypes.h limits
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9533,24 +11342,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -9561,13 +11382,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9576,8 +11398,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -9601,9 +11428,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -9627,25 +11455,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -9663,18 +11490,19 @@
- for ac_header in unistd.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9685,24 +11513,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -9713,13 +11553,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9728,8 +11569,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -9753,9 +11599,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -9779,25 +11626,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -9813,18 +11659,19 @@
- for ac_header in windows.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9835,24 +11682,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -9863,13 +11722,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -9878,8 +11738,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -9903,9 +11768,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -9929,25 +11795,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -10078,8 +11943,8 @@
- esac
-
- # AC_CHECK_TYPES is insufficient, as linking may still fail :-/
--echo "$as_me:$LINENO: checking for wstring" >&5
--echo $ECHO_N "checking for wstring... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for wstring" >&5
-+echo $ECHO_N "checking for wstring... $ECHO_C" >&6; }
- if test "${ac_cv_type_wstring_linkable+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -10100,24 +11965,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10128,11 +12005,12 @@
-
- ac_cv_type_wstring_linkable=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_wstring_linkable" >&5
--echo "${ECHO_T}$ac_cv_type_wstring_linkable" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_wstring_linkable" >&5
-+echo "${ECHO_T}$ac_cv_type_wstring_linkable" >&6; }
- if test "$ac_cv_type_wstring_linkable" = "yes"; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -10141,8 +12019,8 @@
-
- fi
-
--echo "$as_me:$LINENO: checking for socklen_t" >&5
--echo $ECHO_N "checking for socklen_t... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for socklen_t" >&5
-+echo $ECHO_N "checking for socklen_t... $ECHO_C" >&6; }
- if test "${ac_cv_type_socklen_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -10155,36 +12033,49 @@
- #include <sys/types.h>
- #include <sys/socket.h>
-
-+typedef socklen_t ac__type_new_;
- int
- main ()
- {
--if ((socklen_t *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (socklen_t))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10195,10 +12086,11 @@
-
- ac_cv_type_socklen_t=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_socklen_t" >&5
--echo "${ECHO_T}$ac_cv_type_socklen_t" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_socklen_t" >&5
-+echo "${ECHO_T}$ac_cv_type_socklen_t" >&6; }
- if test $ac_cv_type_socklen_t = yes; then
-
- cat >>confdefs.h <<_ACEOF
-@@ -10222,18 +12114,19 @@
- sys/sockio.h sys/statvfs.h sys/sysinfo.h sys/vfs.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -10244,24 +12137,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10272,13 +12177,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -10287,8 +12193,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -10312,9 +12223,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -10338,25 +12250,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -10373,18 +12284,19 @@
- for ac_header in winternl.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -10395,24 +12307,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10423,13 +12347,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -10438,8 +12363,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -10463,9 +12393,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -10489,25 +12420,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -10539,18 +12469,19 @@
- sys/ioctl.h sys/select.h sys/socket.h sys/time.h wchar.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-- echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
-+ { echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking $ac_header usability" >&5
--echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header usability" >&5
-+echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -10561,24 +12492,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10589,13 +12532,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking $ac_header presence" >&5
--echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking $ac_header presence" >&5
-+echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -10604,8 +12548,13 @@
- /* end confdefs.h. */
- #include <$ac_header>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -10629,9 +12578,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -10655,25 +12605,24 @@
- echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- eval "$as_ac_Header=\$ac_header_preproc"
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-
- fi
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
-@@ -10685,8 +12634,8 @@
-
- done
-
--echo "$as_me:$LINENO: checking whether time.h and sys/time.h may both be included" >&5
--echo $ECHO_N "checking whether time.h and sys/time.h may both be included... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether time.h and sys/time.h may both be included" >&5
-+echo $ECHO_N "checking whether time.h and sys/time.h may both be included... $ECHO_C" >&6; }
- if test "${ac_cv_header_time+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -10710,24 +12659,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10738,10 +12699,11 @@
-
- ac_cv_header_time=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_header_time" >&5
--echo "${ECHO_T}$ac_cv_header_time" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_header_time" >&5
-+echo "${ECHO_T}$ac_cv_header_time" >&6; }
- if test $ac_cv_header_time = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -10753,8 +12715,8 @@
-
- ## gethostbyname_r() -- 2 different variants: 5-arg (Solaris), 6-arg (Linux).
-
--echo "$as_me:$LINENO: checking for gethostbyname_r" >&5
--echo $ECHO_N "checking for gethostbyname_r... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for gethostbyname_r" >&5
-+echo $ECHO_N "checking for gethostbyname_r... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_gethostbyname_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -10781,24 +12743,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10810,8 +12784,10 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- if test "$ncbi_cv_func_gethostbyname_r" = "no" ; then
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -10835,24 +12811,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10864,12 +12852,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyname_r" >&5
--echo "${ECHO_T}$ncbi_cv_func_gethostbyname_r" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyname_r" >&5
-+echo "${ECHO_T}$ncbi_cv_func_gethostbyname_r" >&6; }
-
- if test "$ncbi_cv_func_gethostbyname_r" != "no" ; then
-
-@@ -10882,8 +12872,8 @@
-
- ## gethostbyaddr_r() -- 2 different variants: 7-arg (Solaris), 8-arg (Linux).
-
--echo "$as_me:$LINENO: checking for gethostbyaddr_r" >&5
--echo $ECHO_N "checking for gethostbyaddr_r... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for gethostbyaddr_r" >&5
-+echo $ECHO_N "checking for gethostbyaddr_r... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_gethostbyaddr_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -10916,24 +12906,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -10945,8 +12947,10 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- if test "$ncbi_cv_func_gethostbyaddr_r" = "no" ; then
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -10976,24 +12980,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11005,12 +13021,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyaddr_r" >&5
--echo "${ECHO_T}$ncbi_cv_func_gethostbyaddr_r" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_gethostbyaddr_r" >&5
-+echo "${ECHO_T}$ncbi_cv_func_gethostbyaddr_r" >&6; }
-
- if test "$ncbi_cv_func_gethostbyaddr_r" != "no" ; then
-
-@@ -11023,8 +13041,8 @@
-
- ## getservbyname_r() -- 2 different variants: 5-arg (Solaris), 6-arg (Linux).
-
--echo "$as_me:$LINENO: checking for getservbyname_r" >&5
--echo $ECHO_N "checking for getservbyname_r... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for getservbyname_r" >&5
-+echo $ECHO_N "checking for getservbyname_r... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_getservbyname_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -11051,24 +13069,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11080,8 +13110,10 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- if test "$ncbi_cv_func_getservbyname_r" = "no" ; then
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -11105,24 +13137,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11134,12 +13178,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_getservbyname_r" >&5
--echo "${ECHO_T}$ncbi_cv_func_getservbyname_r" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_getservbyname_r" >&5
-+echo "${ECHO_T}$ncbi_cv_func_getservbyname_r" >&6; }
-
- if test "$ncbi_cv_func_getservbyname_r" != "no" ; then
-
-@@ -11152,8 +13198,8 @@
- ## getpwuid_r() -- 2 major variants: 4-arg, 5-arg (POSIX).
- ## (Alternate 4-arg interface ignored due to rarity.)
-
--echo "$as_me:$LINENO: checking for getpwuid_r" >&5
--echo $ECHO_N "checking for getpwuid_r... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for getpwuid_r" >&5
-+echo $ECHO_N "checking for getpwuid_r... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_getpwuid_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -11178,24 +13224,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11204,8 +13262,10 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- if test "$ncbi_cv_func_getpwuid_r" = "no" ; then
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -11227,24 +13287,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11253,12 +13325,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_getpwuid_r" >&5
--echo "${ECHO_T}$ncbi_cv_func_getpwuid_r" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_getpwuid_r" >&5
-+echo "${ECHO_T}$ncbi_cv_func_getpwuid_r" >&6; }
-
- if test "$ncbi_cv_func_getpwuid_r" != "no" ; then
-
-@@ -11270,8 +13344,8 @@
-
- # Perform a full-fledged check in C++ to be sure of an actual declaration.
- # Accommodate the old Solaris interface that returns char* rather than int. :-/
--echo "$as_me:$LINENO: checking for getlogin_r" >&5
--echo $ECHO_N "checking for getlogin_r... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for getlogin_r" >&5
-+echo $ECHO_N "checking for getlogin_r... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_getlogin_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -11292,24 +13366,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11320,10 +13406,11 @@
-
- ncbi_cv_func_getlogin_r=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_getlogin_r" >&5
--echo "${ECHO_T}$ncbi_cv_func_getlogin_r" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_getlogin_r" >&5
-+echo "${ECHO_T}$ncbi_cv_func_getlogin_r" >&6; }
- if test $ncbi_cv_func_getlogin_r = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -11342,13 +13429,12 @@
-
-
-
--
- for ac_func in localtime_r pthread_setconcurrency pthread_atfork
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -11374,53 +13460,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11431,11 +13523,13 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-@@ -11445,8 +13539,8 @@
- done
-
- if test "$ac_cv_func_localtime_r" = "yes" ; then
-- echo "$as_me:$LINENO: checking return type of localtime_r" >&5
--echo $ECHO_N "checking return type of localtime_r... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking return type of localtime_r" >&5
-+echo $ECHO_N "checking return type of localtime_r... $ECHO_C" >&6; }
- if test "${ac_cv_func_which_localtime_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -11469,24 +13563,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11497,10 +13603,11 @@
-
- ac_cv_func_which_localtime_r=int
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func_which_localtime_r" >&5
--echo "${ECHO_T}$ac_cv_func_which_localtime_r" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_func_which_localtime_r" >&5
-+echo "${ECHO_T}$ac_cv_func_which_localtime_r" >&6; }
- if test $ac_cv_func_which_localtime_r = struct; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -11516,8 +13623,8 @@
- fi
- fi
-
--echo "$as_me:$LINENO: checking whether pthread mutexes are available" >&5
--echo $ECHO_N "checking whether pthread mutexes are available... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether pthread mutexes are available" >&5
-+echo $ECHO_N "checking whether pthread mutexes are available... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_pthread_mutex+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -11538,24 +13645,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11566,11 +13685,12 @@
-
- ncbi_cv_func_pthread_mutex=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_pthread_mutex" >&5
--echo "${ECHO_T}$ncbi_cv_func_pthread_mutex" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_pthread_mutex" >&5
-+echo "${ECHO_T}$ncbi_cv_func_pthread_mutex" >&6; }
- if test $ncbi_cv_func_pthread_mutex=yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -11586,9 +13706,9 @@
- for ac_func in vprintf
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -11614,53 +13734,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11671,18 +13797,20 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
- _ACEOF
-
--echo "$as_me:$LINENO: checking for _doprnt" >&5
--echo $ECHO_N "checking for _doprnt... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for _doprnt" >&5
-+echo $ECHO_N "checking for _doprnt... $ECHO_C" >&6; }
- if test "${ac_cv_func__doprnt+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -11709,53 +13837,59 @@
-
- #undef _doprnt
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char _doprnt ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub__doprnt) || defined (__stub____doprnt)
-+#if defined __stub__doprnt || defined __stub____doprnt
- choke me
--#else
--char (*f) () = _doprnt;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != _doprnt;
-+return _doprnt ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11766,11 +13900,12 @@
-
- ac_cv_func__doprnt=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func__doprnt" >&5
--echo "${ECHO_T}$ac_cv_func__doprnt" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_func__doprnt" >&5
-+echo "${ECHO_T}$ac_cv_func__doprnt" >&6; }
- if test $ac_cv_func__doprnt = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -11816,17 +13951,18 @@
-
-
-
--for ac_func in euidaccess atoll basename lchown fseeko getpagesize \
-- getpass getpassphrase getpwuid getrusage gettimeofday \
-- getuid memrchr readpassphrase readv usleep \
-+
-+for ac_func in euidaccess atoll basename lchown fseeko getgrouplist \
-+ getpagesize getpass getpassphrase getpwuid getrusage \
-+ gettimeofday getuid memrchr readpassphrase readv usleep \
- asprintf vasprintf vsnprintf select statfs statvfs \
- strcasecmp strlcat strlcpy strdup strndup strtok_r \
- sysmp timegm utimes lutimes writev
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -11852,53 +13988,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -11909,11 +14051,13 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-@@ -11922,15 +14066,15 @@
- fi
- done
-
--ac_ext=cc
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
- ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-
--echo "$as_me:$LINENO: checking return type of signal handlers" >&5
--echo $ECHO_N "checking return type of signal handlers... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking return type of signal handlers" >&5
-+echo $ECHO_N "checking return type of signal handlers... $ECHO_C" >&6; }
- if test "${ac_cv_type_signal+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -11942,56 +14086,61 @@
- /* end confdefs.h. */
- #include <sys/types.h>
- #include <signal.h>
--#ifdef signal
--# undef signal
--#endif
--#ifdef __cplusplus
--extern "C" void (*signal (int, void (*)(int)))(int);
--#else
--void (*signal ()) ();
--#endif
-
- int
- main ()
- {
--int i;
-+return *(signal (0, 0)) (0) == 1;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_type_signal=void
-+ ac_cv_type_signal=int
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_type_signal=int
-+ ac_cv_type_signal=void
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_signal" >&5
--echo "${ECHO_T}$ac_cv_type_signal" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_signal" >&5
-+echo "${ECHO_T}$ac_cv_type_signal" >&6; }
-
- cat >>confdefs.h <<_ACEOF
- #define RETSIGTYPE $ac_cv_type_signal
-@@ -11999,8 +14148,8 @@
-
-
- test "$ac_cv_func_select" = yes || ncbi_cv_func_select_updates_timeout=no
--echo "$as_me:$LINENO: checking whether select updates the timeout when interrupted" >&5
--echo $ECHO_N "checking whether select updates the timeout when interrupted... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether select updates the timeout when interrupted" >&5
-+echo $ECHO_N "checking whether select updates the timeout when interrupted... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_select_updates_timeout+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12041,13 +14190,22 @@
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12060,11 +14218,13 @@
- ( exit $ac_status )
- ncbi_cv_func_select_updates_timeout=no
- fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
-+
-+
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_select_updates_timeout" >&5
--echo "${ECHO_T}$ncbi_cv_func_select_updates_timeout" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_select_updates_timeout" >&5
-+echo "${ECHO_T}$ncbi_cv_func_select_updates_timeout" >&6; }
- if test "$ncbi_cv_func_select_updates_timeout" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -12078,8 +14238,8 @@
- # is yes when cross-compiling; anyone cross-compiling for exceptional
- # platforms can set ncbi_cv_func_strcasecmp_lc=no in config.site.
- if test "$ac_cv_func_strcasecmp" = yes; then
-- echo "$as_me:$LINENO: checking whether strcasecmp treats letters as lowercase" >&5
--echo $ECHO_N "checking whether strcasecmp treats letters as lowercase... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether strcasecmp treats letters as lowercase" >&5
-+echo $ECHO_N "checking whether strcasecmp treats letters as lowercase... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_strcasecmp_lc+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12102,13 +14262,22 @@
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12121,11 +14290,13 @@
- ( exit $ac_status )
- ncbi_cv_func_strcasecmp_lc=no
- fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
-+
-+
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_strcasecmp_lc" >&5
--echo "${ECHO_T}$ncbi_cv_func_strcasecmp_lc" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_strcasecmp_lc" >&5
-+echo "${ECHO_T}$ncbi_cv_func_strcasecmp_lc" >&6; }
- if test "$ncbi_cv_func_strcasecmp_lc" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -12135,8 +14306,8 @@
- fi
- fi
-
--echo "$as_me:$LINENO: checking for Linux-like sysinfo with 1 arg" >&5
--echo $ECHO_N "checking for Linux-like sysinfo with 1 arg... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for Linux-like sysinfo with 1 arg" >&5
-+echo $ECHO_N "checking for Linux-like sysinfo with 1 arg... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_sysinfo_1+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12160,24 +14331,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12188,10 +14371,11 @@
-
- ncbi_cv_func_sysinfo_1=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_sysinfo_1" >&5
--echo "${ECHO_T}$ncbi_cv_func_sysinfo_1" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_sysinfo_1" >&5
-+echo "${ECHO_T}$ncbi_cv_func_sysinfo_1" >&6; }
-
- if test "$ncbi_cv_func_sysinfo_1" = yes; then
-
-@@ -12205,9 +14389,9 @@
- for ac_func in getloadavg
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -12233,53 +14417,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12290,11 +14480,13 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-@@ -12306,8 +14498,8 @@
-
- ## readdir_r() -- 2 different variants: 2-arg (trad. Solaris), 3-arg (POSIX).
-
--echo "$as_me:$LINENO: checking for readdir_r" >&5
--echo $ECHO_N "checking for readdir_r... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for readdir_r" >&5
-+echo $ECHO_N "checking for readdir_r... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_readdir_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12328,24 +14520,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12354,8 +14558,10 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- if test "$ncbi_cv_func_readdir_r" = "no" ; then
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -12373,24 +14579,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12399,12 +14617,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_readdir_r" >&5
--echo "${ECHO_T}$ncbi_cv_func_readdir_r" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_readdir_r" >&5
-+echo "${ECHO_T}$ncbi_cv_func_readdir_r" >&6; }
-
- if test "$ncbi_cv_func_readdir_r" != "no" ; then
-
-@@ -12415,8 +14635,8 @@
- fi
-
- ### Check for typedefs, structures, and compiler features.
--echo "$as_me:$LINENO: checking for an ANSI C-conforming const" >&5
--echo $ECHO_N "checking for an ANSI C-conforming const... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for an ANSI C-conforming const" >&5
-+echo $ECHO_N "checking for an ANSI C-conforming const... $ECHO_C" >&6; }
- if test "${ac_cv_c_const+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12456,6 +14676,7 @@
- char const *s = 0 ? (char *) 0 : (char const *) 0;
-
- *t++ = 0;
-+ if (s) return 0;
- }
- { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */
- int x[] = {25, 17};
-@@ -12474,7 +14695,9 @@
- }
- { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */
- const int foo = 10;
-+ if (!foo) return 0;
- }
-+ return !x[0] && !zero.x;
- #endif
-
- ;
-@@ -12482,24 +14705,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12510,10 +14745,11 @@
-
- ac_cv_c_const=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_c_const" >&5
--echo "${ECHO_T}$ac_cv_c_const" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_c_const" >&5
-+echo "${ECHO_T}$ac_cv_c_const" >&6; }
- if test $ac_cv_c_const = no; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -12525,8 +14761,8 @@
-
- ### Check for C standard types and sizes
- if test "${with_universal-no}" = "no"; then
-- echo "$as_me:$LINENO: checking whether byte ordering is bigendian" >&5
--echo $ECHO_N "checking whether byte ordering is bigendian... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether byte ordering is bigendian" >&5
-+echo $ECHO_N "checking whether byte ordering is bigendian... $ECHO_C" >&6; }
- if test "${ac_cv_c_bigendian+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12552,24 +14788,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12595,24 +14843,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12623,7 +14883,8 @@
-
- ac_cv_c_bigendian=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-@@ -12638,11 +14899,11 @@
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--short ascii_mm[] = { 0x4249, 0x4765, 0x6E44, 0x6961, 0x6E53, 0x7953, 0 };
--short ascii_ii[] = { 0x694C, 0x5454, 0x656C, 0x6E45, 0x6944, 0x6E61, 0 };
-+short int ascii_mm[] = { 0x4249, 0x4765, 0x6E44, 0x6961, 0x6E53, 0x7953, 0 };
-+short int ascii_ii[] = { 0x694C, 0x5454, 0x656C, 0x6E45, 0x6944, 0x6E61, 0 };
- void _ascii () { char *s = (char *) ascii_mm; s = (char *) ascii_ii; }
--short ebcdic_ii[] = { 0x89D3, 0xE3E3, 0x8593, 0x95C5, 0x89C4, 0x9581, 0 };
--short ebcdic_mm[] = { 0xC2C9, 0xC785, 0x95C4, 0x8981, 0x95E2, 0xA8E2, 0 };
-+short int ebcdic_ii[] = { 0x89D3, 0xE3E3, 0x8593, 0x95C5, 0x89C4, 0x9581, 0 };
-+short int ebcdic_mm[] = { 0xC2C9, 0xC785, 0x95C4, 0x8981, 0x95E2, 0xA8E2, 0 };
- void _ebcdic () { char *s = (char *) ebcdic_mm; s = (char *) ebcdic_ii; }
- int
- main ()
-@@ -12653,24 +14914,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12689,8 +14962,10 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -12698,27 +14973,41 @@
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-+$ac_includes_default
- int
- main ()
- {
-+
- /* Are we little or big endian? From Harbison&Steele. */
- union
- {
-- long l;
-- char c[sizeof (long)];
-+ long int l;
-+ char c[sizeof (long int)];
- } u;
- u.l = 1;
-- exit (u.c[sizeof (long) - 1] == 1);
-+ return u.c[sizeof (long int) - 1] == 1;
-+
-+ ;
-+ return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12731,13 +15020,16 @@
- ( exit $ac_status )
- ac_cv_c_bigendian=yes
- fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
-+
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_c_bigendian" >&5
--echo "${ECHO_T}$ac_cv_c_bigendian" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_c_bigendian" >&5
-+echo "${ECHO_T}$ac_cv_c_bigendian" >&6; }
- case $ac_cv_c_bigendian in
- yes)
-
-@@ -12756,8 +15048,8 @@
- esac
-
-
--echo "$as_me:$LINENO: checking whether char is unsigned" >&5
--echo $ECHO_N "checking whether char is unsigned... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether char is unsigned" >&5
-+echo $ECHO_N "checking whether char is unsigned... $ECHO_C" >&6; }
- if test "${ac_cv_c_char_unsigned+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12779,24 +15071,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12807,10 +15111,11 @@
-
- ac_cv_c_char_unsigned=yes
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_c_char_unsigned" >&5
--echo "${ECHO_T}$ac_cv_c_char_unsigned" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_c_char_unsigned" >&5
-+echo "${ECHO_T}$ac_cv_c_char_unsigned" >&6; }
- if test $ac_cv_c_char_unsigned = yes && test "$GCC" != yes; then
- cat >>confdefs.h <<\_ACEOF
- #define __CHAR_UNSIGNED__ 1
-@@ -12818,8 +15123,8 @@
-
- fi
-
-- echo "$as_me:$LINENO: checking for char" >&5
--echo $ECHO_N "checking for char... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for char" >&5
-+echo $ECHO_N "checking for char... $ECHO_C" >&6; }
- if test "${ac_cv_type_char+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -12830,36 +15135,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef char ac__type_new_;
- int
- main ()
- {
--if ((char *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (char))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12870,18 +15188,19 @@
-
- ac_cv_type_char=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_char" >&5
--echo "${ECHO_T}$ac_cv_type_char" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_char" >&5
-+echo "${ECHO_T}$ac_cv_type_char" >&6; }
-
--echo "$as_me:$LINENO: checking size of char" >&5
--echo $ECHO_N "checking size of char... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of char" >&5
-+echo $ECHO_N "checking size of char... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_char+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_char" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -12894,10 +15213,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef char ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (char))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -12905,24 +15225,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12935,10 +15267,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef char ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (char))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -12946,24 +15279,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -12979,7 +15324,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -12992,10 +15338,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef char ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (char))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -13003,24 +15350,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13033,10 +15392,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef char ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (char))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13044,24 +15404,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13077,7 +15449,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -13085,9 +15458,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -13098,10 +15473,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef char ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (char))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13109,24 +15485,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13137,24 +15525,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_char=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (char), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (char)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (char), 77
-+echo "$as_me: error: cannot compute sizeof (char)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -13162,8 +15544,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (char)); }
--unsigned long ulongval () { return (long) (sizeof (char)); }
-+ typedef char ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -13172,35 +15555,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (char))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (char))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (char))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13211,29 +15603,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (char), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (char)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (char), 77
-+echo "$as_me: error: cannot compute sizeof (char)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_char=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_char" >&5
--echo "${ECHO_T}$ac_cv_sizeof_char" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_char" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_char" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_CHAR $ac_cv_sizeof_char
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for double" >&5
--echo $ECHO_N "checking for double... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for double" >&5
-+echo $ECHO_N "checking for double... $ECHO_C" >&6; }
- if test "${ac_cv_type_double+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -13244,36 +15635,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef double ac__type_new_;
- int
- main ()
- {
--if ((double *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (double))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13284,18 +15688,19 @@
-
- ac_cv_type_double=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_double" >&5
--echo "${ECHO_T}$ac_cv_type_double" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_double" >&5
-+echo "${ECHO_T}$ac_cv_type_double" >&6; }
-
--echo "$as_me:$LINENO: checking size of double" >&5
--echo $ECHO_N "checking size of double... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of double" >&5
-+echo $ECHO_N "checking size of double... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_double+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_double" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -13308,10 +15713,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (double))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -13319,24 +15725,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13349,10 +15767,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (double))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13360,24 +15779,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13393,7 +15824,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -13406,10 +15838,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (double))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -13417,24 +15850,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13447,10 +15892,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (double))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13458,24 +15904,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13491,7 +15949,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -13499,9 +15958,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -13512,10 +15973,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (double))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13523,24 +15985,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13551,24 +16025,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_double=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (double), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (double)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (double), 77
-+echo "$as_me: error: cannot compute sizeof (double)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -13576,8 +16044,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (double)); }
--unsigned long ulongval () { return (long) (sizeof (double)); }
-+ typedef double ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -13586,35 +16055,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (double))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (double))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (double))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13625,29 +16103,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (double), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (double)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (double), 77
-+echo "$as_me: error: cannot compute sizeof (double)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_double=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_double" >&5
--echo "${ECHO_T}$ac_cv_sizeof_double" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_double" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_double" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_DOUBLE $ac_cv_sizeof_double
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for float" >&5
--echo $ECHO_N "checking for float... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for float" >&5
-+echo $ECHO_N "checking for float... $ECHO_C" >&6; }
- if test "${ac_cv_type_float+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -13658,36 +16135,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef float ac__type_new_;
- int
- main ()
- {
--if ((float *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (float))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13698,18 +16188,19 @@
-
- ac_cv_type_float=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_float" >&5
--echo "${ECHO_T}$ac_cv_type_float" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_float" >&5
-+echo "${ECHO_T}$ac_cv_type_float" >&6; }
-
--echo "$as_me:$LINENO: checking size of float" >&5
--echo $ECHO_N "checking size of float... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of float" >&5
-+echo $ECHO_N "checking size of float... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_float+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_float" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -13722,10 +16213,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef float ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (float))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -13733,24 +16225,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13763,10 +16267,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef float ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (float))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13774,24 +16279,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13807,7 +16324,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -13820,10 +16338,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef float ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (float))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -13831,24 +16350,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13861,10 +16392,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef float ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (float))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13872,24 +16404,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13905,7 +16449,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -13913,9 +16458,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -13926,10 +16473,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef float ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (float))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -13937,24 +16485,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -13965,24 +16525,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_float=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (float), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (float)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (float), 77
-+echo "$as_me: error: cannot compute sizeof (float)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -13990,8 +16544,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (float)); }
--unsigned long ulongval () { return (long) (sizeof (float)); }
-+ typedef float ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -14000,35 +16555,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (float))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (float))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (float))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14039,29 +16603,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (float), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (float)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (float), 77
-+echo "$as_me: error: cannot compute sizeof (float)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_float=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_float" >&5
--echo "${ECHO_T}$ac_cv_sizeof_float" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_float" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_float" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_FLOAT $ac_cv_sizeof_float
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for int" >&5
--echo $ECHO_N "checking for int... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for int" >&5
-+echo $ECHO_N "checking for int... $ECHO_C" >&6; }
- if test "${ac_cv_type_int+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -14072,36 +16635,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef int ac__type_new_;
- int
- main ()
- {
--if ((int *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (int))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14112,18 +16688,19 @@
-
- ac_cv_type_int=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_int" >&5
--echo "${ECHO_T}$ac_cv_type_int" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_int" >&5
-+echo "${ECHO_T}$ac_cv_type_int" >&6; }
-
--echo "$as_me:$LINENO: checking size of int" >&5
--echo $ECHO_N "checking size of int... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of int" >&5
-+echo $ECHO_N "checking size of int... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_int+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_int" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -14136,10 +16713,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef int ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (int))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -14147,24 +16725,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14177,10 +16767,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef int ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (int))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -14188,24 +16779,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14221,7 +16824,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -14234,10 +16838,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef int ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (int))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -14245,24 +16850,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14275,10 +16892,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef int ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (int))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -14286,24 +16904,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14319,7 +16949,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -14327,9 +16958,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -14340,10 +16973,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef int ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (int))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -14351,24 +16985,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14379,24 +17025,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_int=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (int), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (int)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (int), 77
-+echo "$as_me: error: cannot compute sizeof (int)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -14404,8 +17044,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (int)); }
--unsigned long ulongval () { return (long) (sizeof (int)); }
-+ typedef int ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -14414,35 +17055,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (int))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (int))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (int))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14453,29 +17103,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (int), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (int)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (int), 77
-+echo "$as_me: error: cannot compute sizeof (int)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_int=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_int" >&5
--echo "${ECHO_T}$ac_cv_sizeof_int" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_int" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_int" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_INT $ac_cv_sizeof_int
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for long" >&5
--echo $ECHO_N "checking for long... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for long" >&5
-+echo $ECHO_N "checking for long... $ECHO_C" >&6; }
- if test "${ac_cv_type_long+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -14486,36 +17135,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef long ac__type_new_;
- int
- main ()
- {
--if ((long *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (long))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14526,18 +17188,19 @@
-
- ac_cv_type_long=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_long" >&5
--echo "${ECHO_T}$ac_cv_type_long" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_long" >&5
-+echo "${ECHO_T}$ac_cv_type_long" >&6; }
-
--echo "$as_me:$LINENO: checking size of long" >&5
--echo $ECHO_N "checking size of long... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of long" >&5
-+echo $ECHO_N "checking size of long... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_long+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_long" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -14550,10 +17213,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -14561,24 +17225,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14591,10 +17267,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -14602,24 +17279,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14635,7 +17324,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -14648,10 +17338,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -14659,24 +17350,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14689,10 +17392,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -14700,24 +17404,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14733,7 +17449,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -14741,9 +17458,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -14754,10 +17473,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -14765,24 +17485,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14793,24 +17525,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_long=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (long), 77
-+echo "$as_me: error: cannot compute sizeof (long)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -14818,8 +17544,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (long)); }
--unsigned long ulongval () { return (long) (sizeof (long)); }
-+ typedef long ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -14828,35 +17555,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (long))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (long))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (long))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14867,29 +17603,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (long), 77
-+echo "$as_me: error: cannot compute sizeof (long)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_long=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_long" >&5
--echo "${ECHO_T}$ac_cv_sizeof_long" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_long" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_long" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_LONG $ac_cv_sizeof_long
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for long double" >&5
--echo $ECHO_N "checking for long double... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for long double" >&5
-+echo $ECHO_N "checking for long double... $ECHO_C" >&6; }
- if test "${ac_cv_type_long_double+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -14900,36 +17635,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef long double ac__type_new_;
- int
- main ()
- {
--if ((long double *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (long double))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -14940,18 +17688,19 @@
-
- ac_cv_type_long_double=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_long_double" >&5
--echo "${ECHO_T}$ac_cv_type_long_double" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_long_double" >&5
-+echo "${ECHO_T}$ac_cv_type_long_double" >&6; }
-
--echo "$as_me:$LINENO: checking size of long double" >&5
--echo $ECHO_N "checking size of long double... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of long double" >&5
-+echo $ECHO_N "checking size of long double... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_long_double+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_long_double" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -14964,10 +17713,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long double))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -14975,24 +17725,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15005,10 +17767,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long double))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15016,24 +17779,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15049,7 +17824,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -15062,10 +17838,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long double))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -15073,24 +17850,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15103,10 +17892,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long double))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15114,24 +17904,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15147,7 +17949,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -15155,9 +17958,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -15168,10 +17973,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long double ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long double))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15179,24 +17985,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15207,24 +18025,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_long_double=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long double), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long double)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (long double), 77
-+echo "$as_me: error: cannot compute sizeof (long double)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -15232,8 +18044,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (long double)); }
--unsigned long ulongval () { return (long) (sizeof (long double)); }
-+ typedef long double ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -15242,35 +18055,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (long double))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (long double))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (long double))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15281,29 +18103,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long double), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long double)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (long double), 77
-+echo "$as_me: error: cannot compute sizeof (long double)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_long_double=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_double" >&5
--echo "${ECHO_T}$ac_cv_sizeof_long_double" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_double" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_long_double" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_LONG_DOUBLE $ac_cv_sizeof_long_double
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for long long" >&5
--echo $ECHO_N "checking for long long... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for long long" >&5
-+echo $ECHO_N "checking for long long... $ECHO_C" >&6; }
- if test "${ac_cv_type_long_long+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -15314,36 +18135,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef long long ac__type_new_;
- int
- main ()
- {
--if ((long long *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (long long))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15354,18 +18188,19 @@
-
- ac_cv_type_long_long=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_long_long" >&5
--echo "${ECHO_T}$ac_cv_type_long_long" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_long_long" >&5
-+echo "${ECHO_T}$ac_cv_type_long_long" >&6; }
-
--echo "$as_me:$LINENO: checking size of long long" >&5
--echo $ECHO_N "checking size of long long... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of long long" >&5
-+echo $ECHO_N "checking size of long long... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_long_long+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_long_long" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -15378,10 +18213,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long long))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -15389,24 +18225,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15419,10 +18267,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long long))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15430,24 +18279,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15463,7 +18324,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -15476,10 +18338,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long long))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -15487,24 +18350,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15517,10 +18392,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long long))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15528,24 +18404,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15561,7 +18449,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -15569,9 +18458,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -15582,10 +18473,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef long long ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (long long))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15593,24 +18485,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15621,24 +18525,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_long_long=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long long), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (long long)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (long long), 77
-+echo "$as_me: error: cannot compute sizeof (long long)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -15646,8 +18544,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (long long)); }
--unsigned long ulongval () { return (long) (sizeof (long long)); }
-+ typedef long long ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -15656,35 +18555,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (long long))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (long long))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (long long))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15695,29 +18603,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long long), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (long long)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (long long), 77
-+echo "$as_me: error: cannot compute sizeof (long long)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_long_long=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_long" >&5
--echo "${ECHO_T}$ac_cv_sizeof_long_long" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_long_long" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_long_long" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_LONG_LONG $ac_cv_sizeof_long_long
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for short" >&5
--echo $ECHO_N "checking for short... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for short" >&5
-+echo $ECHO_N "checking for short... $ECHO_C" >&6; }
- if test "${ac_cv_type_short+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -15728,36 +18635,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef short ac__type_new_;
- int
- main ()
- {
--if ((short *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (short))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15768,18 +18688,19 @@
-
- ac_cv_type_short=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_short" >&5
--echo "${ECHO_T}$ac_cv_type_short" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_short" >&5
-+echo "${ECHO_T}$ac_cv_type_short" >&6; }
-
--echo "$as_me:$LINENO: checking size of short" >&5
--echo $ECHO_N "checking size of short... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of short" >&5
-+echo $ECHO_N "checking size of short... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_short+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_short" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -15792,10 +18713,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef short ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (short))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -15803,24 +18725,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15833,10 +18767,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef short ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (short))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15844,24 +18779,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15877,7 +18824,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -15890,10 +18838,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef short ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (short))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -15901,24 +18850,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15931,10 +18892,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef short ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (short))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -15942,24 +18904,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -15975,7 +18949,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -15983,9 +18958,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -15996,10 +18973,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef short ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (short))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -16007,24 +18985,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16035,24 +19025,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_short=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (short), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (short)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (short), 77
-+echo "$as_me: error: cannot compute sizeof (short)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -16060,8 +19044,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (short)); }
--unsigned long ulongval () { return (long) (sizeof (short)); }
-+ typedef short ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -16070,35 +19055,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (short))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (short))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (short))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16109,29 +19103,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (short), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (short)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (short), 77
-+echo "$as_me: error: cannot compute sizeof (short)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_short=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_short" >&5
--echo "${ECHO_T}$ac_cv_sizeof_short" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_short" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_short" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_SHORT $ac_cv_sizeof_short
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for void*" >&5
--echo $ECHO_N "checking for void*... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for void*" >&5
-+echo $ECHO_N "checking for void*... $ECHO_C" >&6; }
- if test "${ac_cv_type_voidp+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -16142,36 +19135,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef void* ac__type_new_;
- int
- main ()
- {
--if ((void* *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (void*))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16182,18 +19188,19 @@
-
- ac_cv_type_voidp=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_voidp" >&5
--echo "${ECHO_T}$ac_cv_type_voidp" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_voidp" >&5
-+echo "${ECHO_T}$ac_cv_type_voidp" >&6; }
-
--echo "$as_me:$LINENO: checking size of void*" >&5
--echo $ECHO_N "checking size of void*... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of void*" >&5
-+echo $ECHO_N "checking size of void*... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof_voidp+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type_voidp" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -16206,10 +19213,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef void* ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (void*))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -16217,24 +19225,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16247,10 +19267,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef void* ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (void*))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -16258,24 +19279,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16291,7 +19324,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -16304,10 +19338,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef void* ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (void*))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -16315,24 +19350,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16345,10 +19392,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef void* ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (void*))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -16356,24 +19404,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16389,7 +19449,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -16397,9 +19458,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -16410,10 +19473,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef void* ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (void*))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -16421,24 +19485,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16449,24 +19525,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof_voidp=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (void*), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (void*)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (void*), 77
-+echo "$as_me: error: cannot compute sizeof (void*)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -16474,8 +19544,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (void*)); }
--unsigned long ulongval () { return (long) (sizeof (void*)); }
-+ typedef void* ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -16484,35 +19555,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (void*))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (void*))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (void*))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16523,29 +19603,28 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (void*), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (void*)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (void*), 77
-+echo "$as_me: error: cannot compute sizeof (void*)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof_voidp=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof_voidp" >&5
--echo "${ECHO_T}$ac_cv_sizeof_voidp" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof_voidp" >&5
-+echo "${ECHO_T}$ac_cv_sizeof_voidp" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF_VOIDP $ac_cv_sizeof_voidp
- _ACEOF
-
-
-- echo "$as_me:$LINENO: checking for __int64" >&5
--echo $ECHO_N "checking for __int64... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for __int64" >&5
-+echo $ECHO_N "checking for __int64... $ECHO_C" >&6; }
- if test "${ac_cv_type___int64+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -16556,36 +19635,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef __int64 ac__type_new_;
- int
- main ()
- {
--if ((__int64 *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (__int64))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16596,18 +19688,19 @@
-
- ac_cv_type___int64=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type___int64" >&5
--echo "${ECHO_T}$ac_cv_type___int64" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type___int64" >&5
-+echo "${ECHO_T}$ac_cv_type___int64" >&6; }
-
--echo "$as_me:$LINENO: checking size of __int64" >&5
--echo $ECHO_N "checking size of __int64... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking size of __int64" >&5
-+echo $ECHO_N "checking size of __int64... $ECHO_C" >&6; }
- if test "${ac_cv_sizeof___int64+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- if test "$ac_cv_type___int64" = yes; then
-- # The cast to unsigned long works around a bug in the HP C Compiler
-+ # The cast to long int works around a bug in the HP C Compiler
- # version HP92453-01 B.11.11.23709.GP, which incorrectly rejects
- # declarations like `int a3[[(sizeof (unsigned char)) >= 0]];'.
- # This bug is HP SR number 8606223364.
-@@ -16620,10 +19713,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef __int64 ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (__int64))) >= 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= 0)];
- test_array [0] = 0
-
- ;
-@@ -16631,24 +19725,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16661,10 +19767,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef __int64 ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (__int64))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -16672,24 +19779,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16705,7 +19824,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -16718,10 +19838,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef __int64 ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (__int64))) < 0)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) < 0)];
- test_array [0] = 0
-
- ;
-@@ -16729,24 +19850,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16759,10 +19892,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef __int64 ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (__int64))) >= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) >= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -16770,24 +19904,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16803,7 +19949,8 @@
- fi
- ac_mid=`expr 2 '*' $ac_mid`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- else
- echo "$as_me: failed program was:" >&5
-@@ -16811,9 +19958,11 @@
-
- ac_lo= ac_hi=
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- # Binary search between lo and hi bounds.
- while test "x$ac_lo" != "x$ac_hi"; do
- ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
-@@ -16824,10 +19973,11 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+ typedef __int64 ac__type_sizeof_;
- int
- main ()
- {
--static int test_array [1 - 2 * !(((long) (sizeof (__int64))) <= $ac_mid)];
-+static int test_array [1 - 2 * !(((long int) (sizeof (ac__type_sizeof_))) <= $ac_mid)];
- test_array [0] = 0
-
- ;
-@@ -16835,24 +19985,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16863,24 +20025,18 @@
-
- ac_lo=`expr '(' $ac_mid ')' + 1`
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- case $ac_lo in
- ?*) ac_cv_sizeof___int64=$ac_lo;;
--'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64), 77
-+'') { { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (__int64), 77
-+echo "$as_me: error: cannot compute sizeof (__int64)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; } ;;
-+ { (exit 77); exit 77; }; } ;;
- esac
- else
-- if test "$cross_compiling" = yes; then
-- { { echo "$as_me:$LINENO: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&5
--echo "$as_me: error: cannot run test program while cross compiling
--See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--else
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -16888,8 +20044,9 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
--long longval () { return (long) (sizeof (__int64)); }
--unsigned long ulongval () { return (long) (sizeof (__int64)); }
-+ typedef __int64 ac__type_sizeof_;
-+static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); }
-+static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); }
- #include <stdio.h>
- #include <stdlib.h>
- int
-@@ -16898,35 +20055,44 @@
-
- FILE *f = fopen ("conftest.val", "w");
- if (! f)
-- exit (1);
-- if (((long) (sizeof (__int64))) < 0)
-+ return 1;
-+ if (((long int) (sizeof (ac__type_sizeof_))) < 0)
- {
-- long i = longval ();
-- if (i != ((long) (sizeof (__int64))))
-- exit (1);
-+ long int i = longval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%ld\n", i);
- }
- else
- {
-- unsigned long i = ulongval ();
-- if (i != ((long) (sizeof (__int64))))
-- exit (1);
-+ unsigned long int i = ulongval ();
-+ if (i != ((long int) (sizeof (ac__type_sizeof_))))
-+ return 1;
- fprintf (f, "%lu\n", i);
- }
-- exit (ferror (f) || fclose (f) != 0);
-+ return ferror (f) || fclose (f) != 0;
-
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -16937,30 +20103,29 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- ( exit $ac_status )
--{ { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64), 77
-+{ { echo "$as_me:$LINENO: error: cannot compute sizeof (__int64)
- See \`config.log' for more details." >&5
--echo "$as_me: error: cannot compute sizeof (__int64), 77
-+echo "$as_me: error: cannot compute sizeof (__int64)
- See \`config.log' for more details." >&2;}
-- { (exit 1); exit 1; }; }
--fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+ { (exit 77); exit 77; }; }
- fi
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
- rm -f conftest.val
- else
- ac_cv_sizeof___int64=0
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_sizeof___int64" >&5
--echo "${ECHO_T}$ac_cv_sizeof___int64" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_sizeof___int64" >&5
-+echo "${ECHO_T}$ac_cv_sizeof___int64" >&6; }
- cat >>confdefs.h <<_ACEOF
- #define SIZEOF___INT64 $ac_cv_sizeof___int64
- _ACEOF
-
-
- fi
--echo "$as_me:$LINENO: checking for intptr_t" >&5
--echo $ECHO_N "checking for intptr_t... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for intptr_t" >&5
-+echo $ECHO_N "checking for intptr_t... $ECHO_C" >&6; }
- if test "${ac_cv_type_intptr_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -16971,36 +20136,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef intptr_t ac__type_new_;
- int
- main ()
- {
--if ((intptr_t *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (intptr_t))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17011,10 +20189,11 @@
-
- ac_cv_type_intptr_t=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_intptr_t" >&5
--echo "${ECHO_T}$ac_cv_type_intptr_t" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_intptr_t" >&5
-+echo "${ECHO_T}$ac_cv_type_intptr_t" >&6; }
- if test $ac_cv_type_intptr_t = yes; then
-
- cat >>confdefs.h <<_ACEOF
-@@ -17023,8 +20202,8 @@
-
-
- fi
--echo "$as_me:$LINENO: checking for uintptr_t" >&5
--echo $ECHO_N "checking for uintptr_t... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for uintptr_t" >&5
-+echo $ECHO_N "checking for uintptr_t... $ECHO_C" >&6; }
- if test "${ac_cv_type_uintptr_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17035,36 +20214,49 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- $ac_includes_default
-+typedef uintptr_t ac__type_new_;
- int
- main ()
- {
--if ((uintptr_t *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (uintptr_t))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17075,10 +20267,11 @@
-
- ac_cv_type_uintptr_t=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_uintptr_t" >&5
--echo "${ECHO_T}$ac_cv_type_uintptr_t" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_uintptr_t" >&5
-+echo "${ECHO_T}$ac_cv_type_uintptr_t" >&6; }
- if test $ac_cv_type_uintptr_t = yes; then
-
- cat >>confdefs.h <<_ACEOF
-@@ -17089,8 +20282,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for struct sockaddr_in.sin_len" >&5
--echo $ECHO_N "checking for struct sockaddr_in.sin_len... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for struct sockaddr_in.sin_len" >&5
-+echo $ECHO_N "checking for struct sockaddr_in.sin_len... $ECHO_C" >&6; }
- if test "${ac_cv_member_struct_sockaddr_in_sin_len+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17114,24 +20307,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17160,24 +20365,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17188,12 +20405,14 @@
-
- ac_cv_member_struct_sockaddr_in_sin_len=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_member_struct_sockaddr_in_sin_len" >&5
--echo "${ECHO_T}$ac_cv_member_struct_sockaddr_in_sin_len" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_member_struct_sockaddr_in_sin_len" >&5
-+echo "${ECHO_T}$ac_cv_member_struct_sockaddr_in_sin_len" >&6; }
- if test $ac_cv_member_struct_sockaddr_in_sin_len = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17203,8 +20422,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for struct tm.tm_zone" >&5
--echo $ECHO_N "checking for struct tm.tm_zone... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for struct tm.tm_zone" >&5
-+echo $ECHO_N "checking for struct tm.tm_zone... $ECHO_C" >&6; }
- if test "${ac_cv_member_struct_tm_tm_zone+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17227,24 +20446,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17272,24 +20503,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17300,12 +20543,14 @@
-
- ac_cv_member_struct_tm_tm_zone=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm_tm_zone" >&5
--echo "${ECHO_T}$ac_cv_member_struct_tm_tm_zone" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm_tm_zone" >&5
-+echo "${ECHO_T}$ac_cv_member_struct_tm_tm_zone" >&6; }
- if test $ac_cv_member_struct_tm_tm_zone = yes; then
-
- cat >>confdefs.h <<_ACEOF
-@@ -17314,8 +20559,8 @@
-
-
- fi
--echo "$as_me:$LINENO: checking for struct tm.__tm_zone" >&5
--echo $ECHO_N "checking for struct tm.__tm_zone... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for struct tm.__tm_zone" >&5
-+echo $ECHO_N "checking for struct tm.__tm_zone... $ECHO_C" >&6; }
- if test "${ac_cv_member_struct_tm___tm_zone+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17338,24 +20583,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17383,24 +20640,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17411,12 +20680,14 @@
-
- ac_cv_member_struct_tm___tm_zone=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm___tm_zone" >&5
--echo "${ECHO_T}$ac_cv_member_struct_tm___tm_zone" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_member_struct_tm___tm_zone" >&5
-+echo "${ECHO_T}$ac_cv_member_struct_tm___tm_zone" >&6; }
- if test $ac_cv_member_struct_tm___tm_zone = yes; then
-
- cat >>confdefs.h <<_ACEOF
-@@ -17428,8 +20699,8 @@
-
-
-
--echo "$as_me:$LINENO: checking whether function prototypes can use throw(...)" >&5
--echo $ECHO_N "checking whether function prototypes can use throw(...)... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether function prototypes can use throw(...)" >&5
-+echo $ECHO_N "checking whether function prototypes can use throw(...)... $ECHO_C" >&6; }
- if test "${ncbi_cv_cxx_throw_spec+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17451,24 +20722,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17479,10 +20762,11 @@
-
- ncbi_cv_cxx_throw_spec=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_cxx_throw_spec" >&5
--echo "${ECHO_T}$ncbi_cv_cxx_throw_spec" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_cxx_throw_spec" >&5
-+echo "${ECHO_T}$ncbi_cv_cxx_throw_spec" >&6; }
- if test "$ncbi_cv_cxx_throw_spec" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17492,8 +20776,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for obsolete string::compare() syntax" >&5
--echo $ECHO_N "checking for obsolete string::compare() syntax... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for obsolete string::compare() syntax" >&5
-+echo $ECHO_N "checking for obsolete string::compare() syntax... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_string_compare_obsolete+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17513,24 +20797,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17541,10 +20837,11 @@
-
- ncbi_cv_func_string_compare_obsolete=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_string_compare_obsolete" >&5
--echo "${ECHO_T}$ncbi_cv_func_string_compare_obsolete" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_string_compare_obsolete" >&5
-+echo "${ECHO_T}$ncbi_cv_func_string_compare_obsolete" >&6; }
- if test "$ncbi_cv_func_string_compare_obsolete" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17554,8 +20851,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking whether the auto_ptr template class works" >&5
--echo $ECHO_N "checking whether the auto_ptr template class works... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether the auto_ptr template class works" >&5
-+echo $ECHO_N "checking whether the auto_ptr template class works... $ECHO_C" >&6; }
- if test "${ncbi_cv_type_auto_ptr_works+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17575,24 +20872,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17603,10 +20912,11 @@
-
- ncbi_cv_type_auto_ptr_works=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_type_auto_ptr_works" >&5
--echo "${ECHO_T}$ncbi_cv_type_auto_ptr_works" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_type_auto_ptr_works" >&5
-+echo "${ECHO_T}$ncbi_cv_type_auto_ptr_works" >&6; }
- if test "$ncbi_cv_cxx_auto_ptr_works" = no; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17616,8 +20926,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for min/max templates" >&5
--echo $ECHO_N "checking for min/max templates... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for min/max templates" >&5
-+echo $ECHO_N "checking for min/max templates... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_min_max+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17645,24 +20955,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17673,10 +20995,11 @@
-
- ncbi_cv_func_min_max=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_min_max" >&5
--echo "${ECHO_T}$ncbi_cv_func_min_max" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_min_max" >&5
-+echo "${ECHO_T}$ncbi_cv_func_min_max" >&6; }
- if test "$ncbi_cv_func_min_max" = no; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17686,8 +21009,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking whether new C++ streams have ios_base::" >&5
--echo $ECHO_N "checking whether new C++ streams have ios_base::... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether new C++ streams have ios_base::" >&5
-+echo $ECHO_N "checking whether new C++ streams have ios_base::... $ECHO_C" >&6; }
- if test "${ncbi_cv_type_ios_base+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17707,24 +21030,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17735,10 +21070,11 @@
-
- ncbi_cv_type_ios_base=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_type_ios_base" >&5
--echo "${ECHO_T}$ncbi_cv_type_ios_base" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_type_ios_base" >&5
-+echo "${ECHO_T}$ncbi_cv_type_ios_base" >&6; }
- if test "$ncbi_cv_type_ios_base" = no; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17748,8 +21084,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for ios(_base)::register_callback" >&5
--echo $ECHO_N "checking for ios(_base)::register_callback... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for ios(_base)::register_callback" >&5
-+echo $ECHO_N "checking for ios(_base)::register_callback... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_ios_register_callback+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17769,24 +21105,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17797,10 +21145,11 @@
-
- ncbi_cv_func_ios_register_callback=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_ios_register_callback" >&5
--echo "${ECHO_T}$ncbi_cv_func_ios_register_callback" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_ios_register_callback" >&5
-+echo "${ECHO_T}$ncbi_cv_func_ios_register_callback" >&6; }
- if test "$ncbi_cv_func_ios_register_callback" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17810,8 +21159,8 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for std::char_traits::" >&5
--echo $ECHO_N "checking for std::char_traits::... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for std::char_traits::" >&5
-+echo $ECHO_N "checking for std::char_traits::... $ECHO_C" >&6; }
- if test "${ncbi_cv_type_char_traits+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -17837,24 +21186,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17865,10 +21226,11 @@
-
- ncbi_cv_type_char_traits=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_type_char_traits" >&5
--echo "${ECHO_T}$ncbi_cv_type_char_traits" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_type_char_traits" >&5
-+echo "${ECHO_T}$ncbi_cv_type_char_traits" >&6; }
- if test "$ncbi_cv_type_char_traits" = no; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -17878,9 +21240,10 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for std::is_sorted<> in <algorithm>" >&5
--echo $ECHO_N "checking for std::is_sorted<> in <algorithm>... $ECHO_C" >&6
--if test "${ncbi_cv_func_is_sorted+set}" = set; then
-+
-+{ echo "$as_me:$LINENO: checking for SysV semaphores" >&5
-+echo $ECHO_N "checking for SysV semaphores... $ECHO_C" >&6; }
-+if test "${ncbi_cv_sys_semaphores+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -17889,99 +21252,48 @@
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <algorithm>
-+#include <sys/types.h>
-+#include <sys/sem.h>
- int
- main ()
- {
--int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;
-+struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT);
-+ buf.sem_op = SEM_UNDO;
- ;
- return 0;
- }
- _ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_func_is_sorted=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_func_is_sorted=no
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_is_sorted" >&5
--echo "${ECHO_T}$ncbi_cv_func_is_sorted" >&6
--if test "$ncbi_cv_func_is_sorted" = yes; then
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_IS_SORTED 1
--_ACEOF
--
--fi
--
--
--
--echo "$as_me:$LINENO: checking for SysV semaphores" >&5
--echo $ECHO_N "checking for SysV semaphores... $ECHO_C" >&6
--if test "${ncbi_cv_sys_semaphores+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <sys/types.h>
--#include <sys/sem.h>
--int
--main ()
--{
--struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT);
-- buf.sem_op = SEM_UNDO;
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -17992,11 +21304,12 @@
-
- ncbi_cv_sys_semaphores=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_sys_semaphores" >&5
--echo "${ECHO_T}$ncbi_cv_sys_semaphores" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_semaphores" >&5
-+echo "${ECHO_T}$ncbi_cv_sys_semaphores" >&6; }
- if test "$ncbi_cv_sys_semaphores" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18005,8 +21318,8 @@
-
- fi
-
--echo "$as_me:$LINENO: checking for union semun" >&5
--echo $ECHO_N "checking for union semun... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for union semun" >&5
-+echo $ECHO_N "checking for union semun... $ECHO_C" >&6; }
- if test "${ac_cv_type_union_semun+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18019,36 +21332,49 @@
- #include <sys/types.h>
- #include <sys/sem.h>
-
-+typedef union semun ac__type_new_;
- int
- main ()
- {
--if ((union semun *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (union semun))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18059,10 +21385,11 @@
-
- ac_cv_type_union_semun=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_union_semun" >&5
--echo "${ECHO_T}$ac_cv_type_union_semun" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_union_semun" >&5
-+echo "${ECHO_T}$ac_cv_type_union_semun" >&6; }
- if test $ac_cv_type_union_semun = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18073,8 +21400,8 @@
-
-
-
--echo "$as_me:$LINENO: checking which way the stack grows" >&5
--echo $ECHO_N "checking which way the stack grows... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking which way the stack grows" >&5
-+echo $ECHO_N "checking which way the stack grows... $ECHO_C" >&6; }
- if test "${ncbi_cv_sys_stack_dir+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18097,13 +21424,22 @@
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18116,11 +21452,13 @@
- ( exit $ac_status )
- ncbi_cv_sys_stack_dir=down
- fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
-+
-+
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_sys_stack_dir" >&5
--echo "${ECHO_T}$ncbi_cv_sys_stack_dir" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_stack_dir" >&5
-+echo "${ECHO_T}$ncbi_cv_sys_stack_dir" >&6; }
- case "$ncbi_cv_sys_stack_dir" in
- up)
- cat >>confdefs.h <<\_ACEOF
-@@ -18141,8 +21479,8 @@
- ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
--echo "$as_me:$LINENO: checking whether the preprocessor supports C99-style variadic macros" >&5
--echo $ECHO_N "checking whether the preprocessor supports C99-style variadic macros... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether the preprocessor supports C99-style variadic macros" >&5
-+echo $ECHO_N "checking whether the preprocessor supports C99-style variadic macros... $ECHO_C" >&6; }
- if test "${ncbi_cv_cpp_std_varargs+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18165,24 +21503,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18193,10 +21543,11 @@
-
- ncbi_cv_cpp_std_varargs=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_cpp_std_varargs" >&5
--echo "${ECHO_T}$ncbi_cv_cpp_std_varargs" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_cpp_std_varargs" >&5
-+echo "${ECHO_T}$ncbi_cv_cpp_std_varargs" >&6; }
- if test "$ncbi_cv_cpp_std_varargs" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18205,8 +21556,8 @@
-
- fi
-
--echo "$as_me:$LINENO: checking whether the preprocessor supports GNU-style variadic macros" >&5
--echo $ECHO_N "checking whether the preprocessor supports GNU-style variadic macros... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether the preprocessor supports GNU-style variadic macros" >&5
-+echo $ECHO_N "checking whether the preprocessor supports GNU-style variadic macros... $ECHO_C" >&6; }
- if test "${ncbi_cv_cpp_gnu_varargs+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18229,24 +21580,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18257,10 +21620,11 @@
-
- ncbi_cv_cpp_gnu_varargs=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_cpp_gnu_varargs" >&5
--echo "${ECHO_T}$ncbi_cv_cpp_gnu_varargs" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_cpp_gnu_varargs" >&5
-+echo "${ECHO_T}$ncbi_cv_cpp_gnu_varargs" >&6; }
- if test "$ncbi_cv_cpp_gnu_varargs" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18269,7 +21633,7 @@
-
- fi
-
--ac_ext=cc
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-@@ -18292,8 +21656,8 @@
- ;;
- esac
-
--echo "$as_me:$LINENO: checking syntax for marking deprecated functions" >&5
--echo $ECHO_N "checking syntax for marking deprecated functions... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking syntax for marking deprecated functions" >&5
-+echo $ECHO_N "checking syntax for marking deprecated functions... $ECHO_C" >&6; }
- if test "${ncbi_cv_c_deprecation_syntax+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18313,24 +21677,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18341,10 +21717,11 @@
-
- ncbi_cv_c_deprecation_syntax=none
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_c_deprecation_syntax" >&5
--echo "${ECHO_T}$ncbi_cv_c_deprecation_syntax" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_c_deprecation_syntax" >&5
-+echo "${ECHO_T}$ncbi_cv_c_deprecation_syntax" >&6; }
- depr=$ncbi_cv_c_deprecation_syntax
- test "$depr" = "none" && depr=""
-
-@@ -18359,8 +21736,8 @@
- ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
- ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
--echo "$as_me:$LINENO: checking how to force inlining" >&5
--echo $ECHO_N "checking how to force inlining... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking how to force inlining" >&5
-+echo $ECHO_N "checking how to force inlining... $ECHO_C" >&6; }
- if test "${ncbi_cv_c_forceinline+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18377,24 +21754,36 @@
- $fi int f(void) { return 0; }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18403,12 +21792,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_c_forceinline" >&5
--echo "${ECHO_T}$ncbi_cv_c_forceinline" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_c_forceinline" >&5
-+echo "${ECHO_T}$ncbi_cv_c_forceinline" >&6; }
- forceinline=$ncbi_cv_c_forceinline
- test "$forceinline" = "no" && forceinline=""
-
-@@ -18417,8 +21808,8 @@
- _ACEOF
-
-
--echo "$as_me:$LINENO: checking whether the C compiler supports __attribute__((destructor))" >&5
--echo $ECHO_N "checking whether the C compiler supports __attribute__((destructor))... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether the C compiler supports __attribute__((destructor))" >&5
-+echo $ECHO_N "checking whether the C compiler supports __attribute__((destructor))... $ECHO_C" >&6; }
- if test "${ncbi_cv_c_attribute_destructor+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18438,24 +21829,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18466,10 +21869,11 @@
-
- ncbi_cv_c_attribute_destructor=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_destructor" >&5
--echo "${ECHO_T}$ncbi_cv_c_attribute_destructor" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_destructor" >&5
-+echo "${ECHO_T}$ncbi_cv_c_attribute_destructor" >&6; }
- if test $ncbi_cv_c_attribute_destructor = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18483,8 +21887,8 @@
- * ) ncbi_cv_c_attribute_visibility_default=unnecessary ;;
- esac
-
--echo "$as_me:$LINENO: checking whether $CC supports __attribute__((visibility(\"default\")))" >&5
--echo $ECHO_N "checking whether $CC supports __attribute__((visibility(\"default\")))... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether $CC supports __attribute__((visibility(\"default\")))" >&5
-+echo $ECHO_N "checking whether $CC supports __attribute__((visibility(\"default\")))... $ECHO_C" >&6; }
- if test "${ncbi_cv_c_attribute_visibility_default+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18504,24 +21908,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18532,10 +21948,11 @@
-
- ncbi_cv_c_attribute_visibility_default=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_visibility_default" >&5
--echo "${ECHO_T}$ncbi_cv_c_attribute_visibility_default" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_c_attribute_visibility_default" >&5
-+echo "${ECHO_T}$ncbi_cv_c_attribute_visibility_default" >&6; }
- if test $ncbi_cv_c_attribute_visibility_default = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18544,13 +21961,13 @@
-
- fi
-
--echo "$as_me:$LINENO: checking whether the C compiler supports C99 restrict" >&5
--echo $ECHO_N "checking whether the C compiler supports C99 restrict... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether the C compiler supports C99 restrict" >&5
-+echo $ECHO_N "checking whether the C compiler supports C99 restrict... $ECHO_C" >&6; }
- if test "${ncbi_cv_c_restrict+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ncbi_cv_c_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_c_restrict" = "no" || break
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -18561,24 +21978,36 @@
- void f(int * $restrict p);
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18587,12 +22016,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_c_restrict" >&5
--echo "${ECHO_T}$ncbi_cv_c_restrict" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_c_restrict" >&5
-+echo "${ECHO_T}$ncbi_cv_c_restrict" >&6; }
- restrict=$ncbi_cv_c_restrict
- test "$restrict" = "no" && restrict=""
-
-@@ -18607,20 +22038,20 @@
- _ACEOF
-
- fi
--ac_ext=cc
-+ac_ext=cpp
- ac_cpp='$CXXCPP $CPPFLAGS'
- ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
- ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
- ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-
--echo "$as_me:$LINENO: checking whether the C++ compiler supports C99 restrict" >&5
--echo $ECHO_N "checking whether the C++ compiler supports C99 restrict... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether the C++ compiler supports C99 restrict" >&5
-+echo $ECHO_N "checking whether the C++ compiler supports C99 restrict... $ECHO_C" >&6; }
- if test "${ncbi_cv_cxx_restrict+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ncbi_cv_cxx_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_cxx_restrict" = "no" || break
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -18631,24 +22062,36 @@
- void f(int * $restrict p);
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18657,12 +22100,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_cxx_restrict" >&5
--echo "${ECHO_T}$ncbi_cv_cxx_restrict" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_cxx_restrict" >&5
-+echo "${ECHO_T}$ncbi_cv_cxx_restrict" >&6; }
- restrict=$ncbi_cv_cxx_restrict
- test "$restrict" = "no" && restrict=""
-
-@@ -18678,8 +22123,8 @@
-
- fi
-
--echo "$as_me:$LINENO: checking syntax for marking functions that never return" >&5
--echo $ECHO_N "checking syntax for marking functions that never return... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking syntax for marking functions that never return" >&5
-+echo $ECHO_N "checking syntax for marking functions that never return... $ECHO_C" >&6; }
- if test "${ncbi_cv_c_noreturn+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18699,24 +22144,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18727,10 +22184,11 @@
-
- ncbi_cv_c_noreturn=none
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_c_noreturn" >&5
--echo "${ECHO_T}$ncbi_cv_c_noreturn" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_c_noreturn" >&5
-+echo "${ECHO_T}$ncbi_cv_c_noreturn" >&6; }
- noret=$ncbi_cv_c_noreturn
- test "$noret" = "none" && noret=""
-
-@@ -18739,8 +22197,8 @@
- _ACEOF
-
-
--echo "$as_me:$LINENO: checking syntax for declaring thread-local variables" >&5
--echo $ECHO_N "checking syntax for declaring thread-local variables... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking syntax for declaring thread-local variables" >&5
-+echo $ECHO_N "checking syntax for declaring thread-local variables... $ECHO_C" >&6; }
- if test "${ncbi_cv_c_tls_var+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18763,24 +22221,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18789,12 +22259,14 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- done
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_c_tls_var" >&5
--echo "${ECHO_T}$ncbi_cv_c_tls_var" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_c_tls_var" >&5
-+echo "${ECHO_T}$ncbi_cv_c_tls_var" >&6; }
- tls_var=$ncbi_cv_c_tls_var
- if test "$tls_var" != "none"; then
-
-@@ -18805,8 +22277,8 @@
- fi
-
- # for FreeTDS
--echo "$as_me:$LINENO: checking whether FIONBIO requires BSD_COMP to be defined" >&5
--echo $ECHO_N "checking whether FIONBIO requires BSD_COMP to be defined... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether FIONBIO requires BSD_COMP to be defined" >&5
-+echo $ECHO_N "checking whether FIONBIO requires BSD_COMP to be defined... $ECHO_C" >&6; }
- if test "${ncbi_cv_decl_fionbio_needs_bsd_comp+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18827,24 +22299,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18871,24 +22355,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18899,12 +22395,14 @@
-
- ncbi_cv_decl_fionbio_needs_bsd_comp="never defined at all"
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_decl_fionbio_needs_bsd_comp" >&5
--echo "${ECHO_T}$ncbi_cv_decl_fionbio_needs_bsd_comp" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_decl_fionbio_needs_bsd_comp" >&5
-+echo "${ECHO_T}$ncbi_cv_decl_fionbio_needs_bsd_comp" >&6; }
- if test "$ncbi_cv_decl_fionbio_needs_bsd_comp" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18913,8 +22411,8 @@
-
- fi
-
--echo "$as_me:$LINENO: checking whether INADDR_NONE is defined" >&5
--echo $ECHO_N "checking whether INADDR_NONE is defined... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether INADDR_NONE is defined" >&5
-+echo $ECHO_N "checking whether INADDR_NONE is defined... $ECHO_C" >&6; }
- if test "${ncbi_cv_decl_inaddr_none+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -18947,24 +22445,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -18975,10 +22485,11 @@
-
- ncbi_cv_decl_inaddr_none=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_decl_inaddr_none" >&5
--echo "${ECHO_T}$ncbi_cv_decl_inaddr_none" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_decl_inaddr_none" >&5
-+echo "${ECHO_T}$ncbi_cv_decl_inaddr_none" >&6; }
- if test "$ncbi_cv_decl_inaddr_none" != yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -18987,8 +22498,8 @@
-
- fi
-
--echo "$as_me:$LINENO: checking whether unaligned reads are permissible" >&5
--echo $ECHO_N "checking whether unaligned reads are permissible... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether unaligned reads are permissible" >&5
-+echo $ECHO_N "checking whether unaligned reads are permissible... $ECHO_C" >&6; }
- if test "${ncbi_cv_sys_unaligned_reads+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -19015,13 +22526,22 @@
- }
- _ACEOF
- rm -f conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>&5
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19034,76 +22554,17 @@
- ( exit $ac_status )
- ncbi_cv_sys_unaligned_reads=no
- fi
--rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
--fi
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_sys_unaligned_reads" >&5
--echo "${ECHO_T}$ncbi_cv_sys_unaligned_reads" >&6
--if test "$ncbi_cv_sys_unaligned_reads" = yes; then
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_UNALIGNED_READS 1
--_ACEOF
--
-+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
- fi
-
--echo "$as_me:$LINENO: checking whether $CXX supports C++0x nullptr" >&5
--echo $ECHO_N "checking whether $CXX supports C++0x nullptr... $ECHO_C" >&6
--if test "${ncbi_cv_cxx_nullptr+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--
--int
--main ()
--{
--void * p = nullptr;
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_cxx_nullptr=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_cxx_nullptr=no
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_cxx_nullptr" >&5
--echo "${ECHO_T}$ncbi_cv_cxx_nullptr" >&6
--if test "$ncbi_cv_cxx_nullptr" = yes; then
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_sys_unaligned_reads" >&5
-+echo "${ECHO_T}$ncbi_cv_sys_unaligned_reads" >&6; }
-+if test "$ncbi_cv_sys_unaligned_reads" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_NULLPTR 1
-+#define HAVE_UNALIGNED_READS 1
- _ACEOF
-
- fi
-@@ -19112,23 +22573,23 @@
- ### --------------------------------------------
-
-
--echo "$as_me:$LINENO: checking whether in-house NCBI resources are available" >&5
--echo $ECHO_N "checking whether in-house NCBI resources are available... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking whether in-house NCBI resources are available" >&5
-+echo $ECHO_N "checking whether in-house NCBI resources are available... $ECHO_C" >&6; }
- if test -n "$orig_NCBI" -a -f "$orig_NCBI/.ncbirc" \
- -a -d /am/coremake_builds/test_data; \
- then
- WithFeatures="$WithFeatures${WithFeaturesSep}in-house-resources"; WithFeaturesSep=" "
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
- ### Common-use system and miscellaneous libs
- if test -z "${NETWORK_LIBS+set}"; then
-- echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
--echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
-+echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6; }
- if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -19141,40 +22602,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char gethostbyname ();
- int
- main ()
- {
--gethostbyname ();
-+return gethostbyname ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19185,20 +22658,21 @@
-
- ac_cv_lib_nsl_gethostbyname=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
--echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
-+echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6; }
- if test $ac_cv_lib_nsl_gethostbyname = yes; then
- libnsl=-lnsl
- else
- libnsl=
- fi
-
-- echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
--echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
-+echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6; }
- if test "${ac_cv_lib_socket_connect+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -19211,40 +22685,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char connect ();
- int
- main ()
- {
--connect ();
-+return connect ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19255,12 +22741,13 @@
-
- ac_cv_lib_socket_connect=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
--echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
-+echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6; }
- if test $ac_cv_lib_socket_connect = yes; then
- NETWORK_LIBS="-lsocket $libnsl"
- else
-@@ -19268,8 +22755,8 @@
- fi
-
- fi
--echo "$as_me:$LINENO: checking for res_search in -lresolv" >&5
--echo $ECHO_N "checking for res_search in -lresolv... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for res_search in -lresolv" >&5
-+echo $ECHO_N "checking for res_search in -lresolv... $ECHO_C" >&6; }
- if test "${ac_cv_lib_resolv_res_search+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -19292,24 +22779,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19320,12 +22819,13 @@
-
- ac_cv_lib_resolv_res_search=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$orig_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_resolv_res_search" >&5
--echo "${ECHO_T}$ac_cv_lib_resolv_res_search" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_resolv_res_search" >&5
-+echo "${ECHO_T}$ac_cv_lib_resolv_res_search" >&6; }
- if test "$ac_cv_lib_resolv_res_search" = "yes"; then
- RESOLVER_LIBS=-lresolv
- else
-@@ -19338,9 +22838,9 @@
- for ac_func in inet_ntoa_r
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -19366,53 +22866,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19423,11 +22929,13 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-@@ -19436,8 +22944,8 @@
- fi
- done
-
--echo "$as_me:$LINENO: checking for getaddrinfo" >&5
--echo $ECHO_N "checking for getaddrinfo... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for getaddrinfo" >&5
-+echo $ECHO_N "checking for getaddrinfo... $ECHO_C" >&6; }
- if test "${ac_cv_func_getaddrinfo+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -19457,24 +22965,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19485,19 +23005,20 @@
-
- ac_cv_func_getaddrinfo=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func_getaddrinfo" >&5
--echo "${ECHO_T}$ac_cv_func_getaddrinfo" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_func_getaddrinfo" >&5
-+echo "${ECHO_T}$ac_cv_func_getaddrinfo" >&6; }
- test "$ac_cv_func_getaddrinfo" = "yes" && \
-
- cat >>confdefs.h <<\_ACEOF
- #define HAVE_GETADDRINFO 1
- _ACEOF
-
--echo "$as_me:$LINENO: checking for getnameinfo" >&5
--echo $ECHO_N "checking for getnameinfo... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for getnameinfo" >&5
-+echo $ECHO_N "checking for getnameinfo... $ECHO_C" >&6; }
- if test "${ac_cv_func_getnameinfo+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -19520,24 +23041,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19548,11 +23081,12 @@
-
- ac_cv_func_getnameinfo=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func_getnameinfo" >&5
--echo "${ECHO_T}$ac_cv_func_getnameinfo" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_func_getnameinfo" >&5
-+echo "${ECHO_T}$ac_cv_func_getnameinfo" >&6; }
- test "$ac_cv_func_getnameinfo" = "yes" && \
-
- cat >>confdefs.h <<\_ACEOF
-@@ -19568,9 +23102,9 @@
- inet_ntop
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -19596,53 +23130,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19653,11 +23193,13 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-@@ -19680,9 +23222,9 @@
- for ac_func in erf
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -19708,53 +23250,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -19765,11 +23313,13 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-@@ -19780,13 +23330,12 @@
-
-
- saved_LIBS=$LIBS
-- echo "$as_me:$LINENO: checking for library containing kstat_open" >&5
--echo $ECHO_N "checking for library containing kstat_open... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for library containing kstat_open" >&5
-+echo $ECHO_N "checking for library containing kstat_open... $ECHO_C" >&6; }
- if test "${ac_cv_search_kstat_open+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_kstat_open=no
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -19794,54 +23343,106 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char kstat_open ();
- int
- main ()
- {
--kstat_open ();
-+return kstat_open ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' "$KSTAT_LIBS" kstat; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_kstat_open="none required"
-+ ac_cv_search_kstat_open=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_kstat_open" = no; then
-- for ac_lib in "$KSTAT_LIBS" kstat; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_kstat_open+set}" = set; then
-+ break
-+fi
-+done
-+if test "${ac_cv_search_kstat_open+set}" = set; then
-+ :
-+else
-+ ac_cv_search_kstat_open=no
-+fi
-+rm conftest.$ac_ext
-+LIBS=$ac_func_search_save_LIBS
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_kstat_open" >&5
-+echo "${ECHO_T}$ac_cv_search_kstat_open" >&6; }
-+ac_res=$ac_cv_search_kstat_open
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBKSTAT 1
-+_ACEOF
-+
-+ test "x$ac_cv_search_kstat_open" = "xnone required" || KSTAT_LIBS=$ac_cv_search_kstat_open
-+fi
-+
-+ LIBS=$saved_LIBS
-+
-+saved_LIBS=$LIBS
-+ { echo "$as_me:$LINENO: checking for library containing rstat" >&5
-+echo $ECHO_N "checking for library containing rstat... $ECHO_C" >&6; }
-+if test "${ac_cv_search_rstat+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_func_search_save_LIBS=$LIBS
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -19849,78 +23450,114 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char kstat_open ();
-+char rstat ();
- int
- main ()
- {
--kstat_open ();
-+return rstat ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' "$RPCSVC_LIBS" rpcsvc; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_kstat_open="-l$ac_lib"
--break
-+ ac_cv_search_rstat=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_rstat+set}" = set; then
-+ break
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
- done
-+if test "${ac_cv_search_rstat+set}" = set; then
-+ :
-+else
-+ ac_cv_search_rstat=no
- fi
-+rm conftest.$ac_ext
- LIBS=$ac_func_search_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_kstat_open" >&5
--echo "${ECHO_T}$ac_cv_search_kstat_open" >&6
--if test "$ac_cv_search_kstat_open" != no; then
-- test "$ac_cv_search_kstat_open" = "none required" || LIBS="$ac_cv_search_kstat_open $LIBS"
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_rstat" >&5
-+echo "${ECHO_T}$ac_cv_search_rstat" >&6; }
-+ac_res=$ac_cv_search_rstat
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBKSTAT 1
-+#define HAVE_LIBRPCSVC 1
- _ACEOF
-
-- test "x$ac_cv_search_kstat_open" = "xnone required" || KSTAT_LIBS=$ac_cv_search_kstat_open
-+ test "x$ac_cv_search_rstat" = "xnone required" || RPCSVC_LIBS=$ac_cv_search_rstat
- fi
-
- LIBS=$saved_LIBS
-
-+ac_ext=c
-+ac_cpp='$CPP $CPPFLAGS'
-+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-+ac_compiler_gnu=$ac_cv_c_compiler_gnu
-+
-+# Force C for this test because Sun WorkShop otherwise complains about
-+# multiple extern "C" declarations of setkey.
- saved_LIBS=$LIBS
-- echo "$as_me:$LINENO: checking for library containing rstat" >&5
--echo $ECHO_N "checking for library containing rstat... $ECHO_C" >&6
--if test "${ac_cv_search_rstat+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for library containing setkey" >&5
-+echo $ECHO_N "checking for library containing setkey... $ECHO_C" >&6; }
-+if test "${ac_cv_search_setkey+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_rstat=no
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -19928,54 +23565,116 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char rstat ();
-+char setkey ();
- int
- main ()
- {
--rstat ();
-+return setkey ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' "$CRYPT_LIBS" crypt crypt_i; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_rstat="none required"
-+ ac_cv_search_setkey=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_rstat" = no; then
-- for ac_lib in "$RPCSVC_LIBS" rpcsvc; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_setkey+set}" = set; then
-+ break
-+fi
-+done
-+if test "${ac_cv_search_setkey+set}" = set; then
-+ :
-+else
-+ ac_cv_search_setkey=no
-+fi
-+rm conftest.$ac_ext
-+LIBS=$ac_func_search_save_LIBS
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_setkey" >&5
-+echo "${ECHO_T}$ac_cv_search_setkey" >&6; }
-+ac_res=$ac_cv_search_setkey
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBCRYPT 1
-+_ACEOF
-+
-+ test "x$ac_cv_search_setkey" = "xnone required" || CRYPT_LIBS=$ac_cv_search_setkey
-+fi
-+
-+ LIBS=$saved_LIBS
-+
-+ac_ext=cpp
-+ac_cpp='$CXXCPP $CPPFLAGS'
-+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-+
-+case "$host_os:$compiler" in
-+ solaris*:GCC ) ac_cv_search_dlopen="-ldl" ;;
-+ darwin* ) ac_cv_search_iconv="-liconv" ;;
-+esac
-+saved_LIBS=$LIBS
-+ { echo "$as_me:$LINENO: checking for library containing dlopen" >&5
-+echo $ECHO_N "checking for library containing dlopen... $ECHO_C" >&6; }
-+if test "${ac_cv_search_dlopen+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_func_search_save_LIBS=$LIBS
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -19983,86 +23682,110 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char rstat ();
-+char dlopen ();
- int
- main ()
- {
--rstat ();
-+return dlopen ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' "$DL_LIBS" dl; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_rstat="-l$ac_lib"
--break
-+ ac_cv_search_dlopen=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_dlopen+set}" = set; then
-+ break
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
- done
-+if test "${ac_cv_search_dlopen+set}" = set; then
-+ :
-+else
-+ ac_cv_search_dlopen=no
- fi
-+rm conftest.$ac_ext
- LIBS=$ac_func_search_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_rstat" >&5
--echo "${ECHO_T}$ac_cv_search_rstat" >&6
--if test "$ac_cv_search_rstat" != no; then
-- test "$ac_cv_search_rstat" = "none required" || LIBS="$ac_cv_search_rstat $LIBS"
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_dlopen" >&5
-+echo "${ECHO_T}$ac_cv_search_dlopen" >&6; }
-+ac_res=$ac_cv_search_dlopen
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBRPCSVC 1
-+#define HAVE_LIBDL 1
- _ACEOF
-
-- test "x$ac_cv_search_rstat" = "xnone required" || RPCSVC_LIBS=$ac_cv_search_rstat
-+ test "x$ac_cv_search_dlopen" = "xnone required" || DL_LIBS=$ac_cv_search_dlopen
- fi
-
- LIBS=$saved_LIBS
-
--ac_ext=c
--ac_cpp='$CPP $CPPFLAGS'
--ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
--ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
--ac_compiler_gnu=$ac_cv_c_compiler_gnu
--
--# Force C for this test because Sun WorkShop otherwise complains about
--# multiple extern "C" declarations of setkey.
--saved_LIBS=$LIBS
-- echo "$as_me:$LINENO: checking for library containing setkey" >&5
--echo $ECHO_N "checking for library containing setkey... $ECHO_C" >&6
--if test "${ac_cv_search_setkey+set}" = set; then
-+# libc's stubs aren't always sufficient...
-+case "$host_os:$libnsl" in
-+ solaris2.[89]:* ) orig_LIBS="$DL_LIBS $orig_LIBS" ;;
-+ solaris*:-lnsl ) NETWORK_LIBS="$NETWORK_LIBS $DL_LIBS" ;;
-+esac
-+{ echo "$as_me:$LINENO: checking for library containing uuid_generate" >&5
-+echo $ECHO_N "checking for library containing uuid_generate... $ECHO_C" >&6; }
-+if test "${ac_cv_search_uuid_generate+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_setkey=no
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -20070,54 +23793,101 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char setkey ();
-+char uuid_generate ();
- int
- main ()
- {
--setkey ();
-+return uuid_generate ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' uuid; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_setkey="none required"
-+ ac_cv_search_uuid_generate=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_setkey" = no; then
-- for ac_lib in "$CRYPT_LIBS" crypt crypt_i; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_uuid_generate+set}" = set; then
-+ break
-+fi
-+done
-+if test "${ac_cv_search_uuid_generate+set}" = set; then
-+ :
-+else
-+ ac_cv_search_uuid_generate=no
-+fi
-+rm conftest.$ac_ext
-+LIBS=$ac_func_search_save_LIBS
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_uuid_generate" >&5
-+echo "${ECHO_T}$ac_cv_search_uuid_generate" >&6; }
-+ac_res=$ac_cv_search_uuid_generate
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-+ WithPackages="$WithPackages${WithPackagesSep}UUID"; WithPackagesSep=" "
-+ test "x$ac_cv_search_uuid_generate" = "xnone required" || \
-+ UUID_LIBS=$ac_cv_search_uuid_generate
-+fi
-+
-+LIBS=$orig_LIBS
-+{ echo "$as_me:$LINENO: checking for library containing fuse_loop" >&5
-+echo $ECHO_N "checking for library containing fuse_loop... $ECHO_C" >&6; }
-+if test "${ac_cv_search_fuse_loop+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_func_search_save_LIBS=$LIBS
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -20125,88 +23895,107 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char setkey ();
-+char fuse_loop ();
- int
- main ()
- {
--setkey ();
-+return fuse_loop ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' fuse; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_c_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_setkey="-l$ac_lib"
--break
-+ ac_cv_search_fuse_loop=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_fuse_loop+set}" = set; then
-+ break
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
- done
-+if test "${ac_cv_search_fuse_loop+set}" = set; then
-+ :
-+else
-+ ac_cv_search_fuse_loop=no
- fi
-+rm conftest.$ac_ext
- LIBS=$ac_func_search_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_setkey" >&5
--echo "${ECHO_T}$ac_cv_search_setkey" >&6
--if test "$ac_cv_search_setkey" != no; then
-- test "$ac_cv_search_setkey" = "none required" || LIBS="$ac_cv_search_setkey $LIBS"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBCRYPT 1
--_ACEOF
--
-- test "x$ac_cv_search_setkey" = "xnone required" || CRYPT_LIBS=$ac_cv_search_setkey
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_fuse_loop" >&5
-+echo "${ECHO_T}$ac_cv_search_fuse_loop" >&6; }
-+ac_res=$ac_cv_search_fuse_loop
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-+ WithPackages="$WithPackages${WithPackagesSep}FUSE"; WithPackagesSep=" "
- fi
-
-- LIBS=$saved_LIBS
--
--ac_ext=cc
--ac_cpp='$CXXCPP $CPPFLAGS'
--ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
--ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
--ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
--
--case "$host_os:$compiler" in
-- solaris*:GCC ) ac_cv_search_dlopen="-ldl" ;;
-- darwin* ) ac_cv_search_iconv="-liconv" ;;
--esac
-+LIBS=$orig_LIBS
-+# Temporarily drop OpenMP flags for this test, as some toolchains count
-+# its support library's indirect use of librt when building applications
-+# but not when building shared libraries with --no-undefined.
-+orig_CXXFLAGS=$CXXFLAGS
-+orig_LDFLAGS=$LDFLAGS
-+CXXFLAGS=`echo $CXXFLAGS | sed -e 's/[^ ]*openmp[^ ]*//g'`
-+LDFLAGS=`echo $LDFLAGS | sed -e 's/[^ ]*openmp[^ ]*//g'`
- saved_LIBS=$LIBS
-- echo "$as_me:$LINENO: checking for library containing dlopen" >&5
--echo $ECHO_N "checking for library containing dlopen... $ECHO_C" >&6
--if test "${ac_cv_search_dlopen+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for library containing clock_gettime" >&5
-+echo $ECHO_N "checking for library containing clock_gettime... $ECHO_C" >&6; }
-+if test "${ac_cv_search_clock_gettime+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_dlopen=no
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -20214,54 +24003,108 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char dlopen ();
-+char clock_gettime ();
- int
- main ()
- {
--dlopen ();
-+return clock_gettime ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' "$RT_LIBS" rt posix4; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_dlopen="none required"
-+ ac_cv_search_clock_gettime=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_dlopen" = no; then
-- for ac_lib in "$DL_LIBS" dl; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_clock_gettime+set}" = set; then
-+ break
-+fi
-+done
-+if test "${ac_cv_search_clock_gettime+set}" = set; then
-+ :
-+else
-+ ac_cv_search_clock_gettime=no
-+fi
-+rm conftest.$ac_ext
-+LIBS=$ac_func_search_save_LIBS
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_clock_gettime" >&5
-+echo "${ECHO_T}$ac_cv_search_clock_gettime" >&6; }
-+ac_res=$ac_cv_search_clock_gettime
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBRT 1
-+_ACEOF
-+
-+ test "x$ac_cv_search_clock_gettime" = "xnone required" || RT_LIBS=$ac_cv_search_clock_gettime
-+fi
-+
-+ LIBS=$saved_LIBS
-+
-+CXXFLAGS=$orig_CXXFLAGS
-+LDFLAGS=$orig_LDFLAGS
-+saved_LIBS=$LIBS
-+ { echo "$as_me:$LINENO: checking for library containing cplus_demangle" >&5
-+echo $ECHO_N "checking for library containing cplus_demangle... $ECHO_C" >&6; }
-+if test "${ac_cv_search_cplus_demangle+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_func_search_save_LIBS=$LIBS
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -20269,1369 +24112,1910 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char dlopen ();
-+char cplus_demangle ();
- int
- main ()
- {
--dlopen ();
-+return cplus_demangle ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' "$DEMANGLE_LIBS" demangle; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_dlopen="-l$ac_lib"
--break
-+ ac_cv_search_cplus_demangle=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_cplus_demangle+set}" = set; then
-+ break
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
- done
-+if test "${ac_cv_search_cplus_demangle+set}" = set; then
-+ :
-+else
-+ ac_cv_search_cplus_demangle=no
- fi
-+rm conftest.$ac_ext
- LIBS=$ac_func_search_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_dlopen" >&5
--echo "${ECHO_T}$ac_cv_search_dlopen" >&6
--if test "$ac_cv_search_dlopen" != no; then
-- test "$ac_cv_search_dlopen" = "none required" || LIBS="$ac_cv_search_dlopen $LIBS"
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_cplus_demangle" >&5
-+echo "${ECHO_T}$ac_cv_search_cplus_demangle" >&6; }
-+ac_res=$ac_cv_search_cplus_demangle
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBDL 1
-+#define HAVE_LIBDEMANGLE 1
- _ACEOF
-
-- test "x$ac_cv_search_dlopen" = "xnone required" || DL_LIBS=$ac_cv_search_dlopen
-+ test "x$ac_cv_search_cplus_demangle" = "xnone required" || DEMANGLE_LIBS=$ac_cv_search_cplus_demangle
- fi
-
- LIBS=$saved_LIBS
-
--# libc's stubs aren't always sufficient...
--case "$host_os:$libnsl" in
-- solaris2.[89]:* ) orig_LIBS="$DL_LIBS $orig_LIBS" ;;
-- solaris*:-lnsl ) NETWORK_LIBS="$NETWORK_LIBS $DL_LIBS" ;;
--esac
--echo "$as_me:$LINENO: checking for library containing uuid_generate" >&5
--echo $ECHO_N "checking for library containing uuid_generate... $ECHO_C" >&6
--if test "${ac_cv_search_uuid_generate+set}" = set; then
-+# Add to (orig_)LIBS if present for the sake of corelib and the
-+# following call to AC_CHECK_FUNCS.
-+if test -n "$DEMANGLE_LIBS$RT_LIBS"; then
-+ LIBS="$DEMANGLE_LIBS $RT_LIBS $LIBS"
-+ orig_LIBS="$DEMANGLE_LIBS $RT_LIBS $orig_LIBS"
-+fi
-+
-+
-+for ac_func in nanosleep sched_yield
-+do
-+as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_uuid_generate=no
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-+/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
-+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
-+#define $ac_func innocuous_$ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
-+/* System header to define __stub macros and hopefully few prototypes,
-+ which can conflict with char $ac_func (); below.
-+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-+ <limits.h> exists even on freestanding compilers. */
-+
-+#ifdef __STDC__
-+# include <limits.h>
-+#else
-+# include <assert.h>
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char uuid_generate ();
--int
--main ()
--{
--uuid_generate ();
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ac_cv_search_uuid_generate="none required"
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
-
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_uuid_generate" = no; then
-- for ac_lib in uuid; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
-+#undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char uuid_generate ();
-+char $ac_func ();
-+/* The GNU C library defines this for functions which it implements
-+ to always fail with ENOSYS. Some functions are actually named
-+ something starting with __ and the normal name is an alias. */
-+#if defined __stub_$ac_func || defined __stub___$ac_func
-+choke me
-+#endif
-+
- int
- main ()
- {
--uuid_generate ();
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_uuid_generate="-l$ac_lib"
--break
-+ eval "$as_ac_var=yes"
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+ eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-- done
--fi
--LIBS=$ac_func_search_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_uuid_generate" >&5
--echo "${ECHO_T}$ac_cv_search_uuid_generate" >&6
--if test "$ac_cv_search_uuid_generate" != no; then
-- test "$ac_cv_search_uuid_generate" = "none required" || LIBS="$ac_cv_search_uuid_generate $LIBS"
-- WithPackages="$WithPackages${WithPackagesSep}UUID"; WithPackagesSep=" "
-- test "x$ac_cv_search_uuid_generate" = "xnone required" || \
-- UUID_LIBS=$ac_cv_search_uuid_generate
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-+if test `eval echo '${'$as_ac_var'}'` = yes; then
-+ cat >>confdefs.h <<_ACEOF
-+#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-+_ACEOF
-+
- fi
-+done
-
--LIBS=$orig_LIBS
--echo "$as_me:$LINENO: checking for library containing fuse_loop" >&5
--echo $ECHO_N "checking for library containing fuse_loop... $ECHO_C" >&6
--if test "${ac_cv_search_fuse_loop+set}" = set; then
-+
-+# We need to include <iconv.h>, since some implementations rename the symbols.
-+# This logic adapted from Bruno Haible's iconv.m4.
-+{ echo "$as_me:$LINENO: checking for library containing iconv" >&5
-+echo $ECHO_N "checking for library containing iconv... $ECHO_C" >&6; }
-+if test "${ac_cv_search_iconv+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_fuse_loop=no
-+
-+ ac_cv_search_iconv=no
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char fuse_loop ();
-+#include <stdlib.h>
-+ #include <iconv.h>
- int
- main ()
- {
--fuse_loop ();
-+iconv_t cd = iconv_open("","");
-+ iconv(cd,NULL,NULL,NULL,NULL);
-+ iconv_close(cd);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_fuse_loop="none required"
-+ ac_cv_search_iconv="none required"
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_fuse_loop" = no; then
-- for ac_lib in fuse; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ if test "$ac_cv_search_iconv" != "none required"; then
-+ for l in iconv; do
-+ LIBS="-l$l $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char fuse_loop ();
-+#include <stdlib.h>
-+ #include <iconv.h>
- int
- main ()
- {
--fuse_loop ();
-+iconv_t cd = iconv_open("","");
-+ iconv(cd,NULL,NULL,NULL,NULL);
-+ iconv_close(cd);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_fuse_loop="-l$ac_lib"
--break
-+ ac_cv_search_iconv=-l$l
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-+ LIBS="$orig_LIBS"
- done
- fi
--LIBS=$ac_func_search_save_LIBS
--fi
--echo "$as_me:$LINENO: result: $ac_cv_search_fuse_loop" >&5
--echo "${ECHO_T}$ac_cv_search_fuse_loop" >&6
--if test "$ac_cv_search_fuse_loop" != no; then
-- test "$ac_cv_search_fuse_loop" = "none required" || LIBS="$ac_cv_search_fuse_loop $LIBS"
-- WithPackages="$WithPackages${WithPackagesSep}FUSE"; WithPackagesSep=" "
- fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_iconv" >&5
-+echo "${ECHO_T}$ac_cv_search_iconv" >&6; }
-+if test "x$ac_cv_search_iconv" != xno; then
-
--LIBS=$orig_LIBS
--saved_LIBS=$LIBS
-- echo "$as_me:$LINENO: checking for library containing clock_gettime" >&5
--echo $ECHO_N "checking for library containing clock_gettime... $ECHO_C" >&6
--if test "${ac_cv_search_clock_gettime+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_clock_gettime=no
--cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBICONV 1
- _ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char clock_gettime ();
--int
--main ()
--{
--clock_gettime ();
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ac_cv_search_clock_gettime="none required"
-+ { echo "$as_me:$LINENO: checking for iconv declaration" >&5
-+echo $ECHO_N "checking for iconv declaration... $ECHO_C" >&6; }
-+ if test "${am_cv_proto_iconv+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
-
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_clock_gettime" = no; then
-- for ac_lib in "$RT_LIBS" rt posix4; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+#include <stdlib.h>
-+#include <iconv.h>
-+extern
- #ifdef __cplusplus
--extern "C"
-+"C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char clock_gettime ();
--int
--main ()
--{
--clock_gettime ();
-- ;
-- return 0;
--}
-+#if defined(__STDC__) || defined(__cplusplus)
-+size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
-+#else
-+size_t iconv();
-+#endif
-+
- _ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+rm -f conftest.$ac_objext
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -s conftest.$ac_objext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_clock_gettime="-l$ac_lib"
--break
-+ am_cv_proto_iconv_arg1=""
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+ am_cv_proto_iconv_arg1="const"
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
-- done
--fi
--LIBS=$ac_func_search_save_LIBS
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+ am_cv_proto_iconv="extern size_t iconv (iconv_t cd, $am_cv_proto_iconv_arg1 char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);"
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_clock_gettime" >&5
--echo "${ECHO_T}$ac_cv_search_clock_gettime" >&6
--if test "$ac_cv_search_clock_gettime" != no; then
-- test "$ac_cv_search_clock_gettime" = "none required" || LIBS="$ac_cv_search_clock_gettime $LIBS"
-
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBRT 1
--_ACEOF
-+ am_cv_proto_iconv=`echo "$am_cv_proto_iconv" | tr -s ' ' | sed -e 's/( /(/'`
-+ { echo "$as_me:$LINENO: result: ${ac_t:-
-+ }$am_cv_proto_iconv" >&5
-+echo "${ECHO_T}${ac_t:-
-+ }$am_cv_proto_iconv" >&6; }
-
-- test "x$ac_cv_search_clock_gettime" = "xnone required" || RT_LIBS=$ac_cv_search_clock_gettime
-+cat >>confdefs.h <<_ACEOF
-+#define ICONV_CONST $am_cv_proto_iconv_arg1
-+_ACEOF
-+
-+ if test "x$ac_cv_search_iconv" != "xnone required"; then
-+ ICONV_LIBS=$ac_cv_search_iconv
-+ fi
- fi
-
-- LIBS=$saved_LIBS
-
--saved_LIBS=$LIBS
-- echo "$as_me:$LINENO: checking for library containing cplus_demangle" >&5
--echo $ECHO_N "checking for library containing cplus_demangle... $ECHO_C" >&6
--if test "${ac_cv_search_cplus_demangle+set}" = set; then
-+### Third-party libraries
-+
-+usr_lib='[/usr]*/lib/*[amdsprcv]*[23469]*'
-+no_usr_lib="s,-L$usr_lib ,,g;"
-+
-+if test "$with_z" != "no"; then
-+ case "$with_z" in
-+ yes | "" ) ;;
-+ * ) Z_PATH=$with_z ;;
-+ esac
-+ if test -d "$Z_PATH"; then
-+ in_path=" in $Z_PATH"
-+ if test -z "$Z_INCLUDE" -a -d "$Z_PATH/include"; then
-+ Z_INCLUDE="-I$Z_PATH/include"
-+ fi
-+ if test -n "$Z_LIBPATH"; then
-+ :
-+ elif test -d "$Z_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $Z_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ Z_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $Z_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ elif test -d "$Z_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $Z_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ Z_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $Z_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ Z_LIBS="$Z_LIBPATH -lz "
-+ else
-+ Z_INCLUDE=""
-+ Z_LIBS="-lz "
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for libz$in_path" >&5
-+echo $ECHO_N "checking for libz$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_z+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_cplus_demangle=no
-+ CPPFLAGS=" $Z_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$Z_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char cplus_demangle ();
-+#include <zlib.h>
- int
- main ()
- {
--cplus_demangle ();
-+gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf))
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_cplus_demangle="none required"
-+ ncbi_cv_lib_z=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+ ncbi_cv_lib_z=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_cplus_demangle" = no; then
-- for ac_lib in "$DEMANGLE_LIBS" demangle; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_z" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_z" >&6; }
-+ if test "$ncbi_cv_lib_z" = "no"; then
-+ if test "${with_z:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-z explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-z explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ fi
-+ fi
-+ if test "$with_z" = "no"; then
-+ Z_PATH="No_Z"
-+ Z_INCLUDE=
-+ Z_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
-+ Z_INCLUDE=" $Z_INCLUDE"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBZ 1
-+_ACEOF
-+
-+ fi
-+
-+
-+
-+if test -z "$Z_LIBS"; then
-+ zlocal=util/compress/zlib
-+ { echo "$as_me:$LINENO: using local zlib copy in $zlocal" >&5
-+echo "$as_me: using local zlib copy in $zlocal" >&6;}
-+ Z_PATH="<$zlocal>"
-+ Z_INCLUDE="-I\$(includedir)/$zlocal -I\$(includedir0)/$zlocal"
-+ # Z_LIBS="-lz"
-+ Z_LIB="z"
-+ # AC_DEFINE(USE_LOCAL_ZLIB, 1, [Define to 1 if using a local copy of zlib.])
-+ WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
-+ WithPackages="$WithPackages${WithPackagesSep}LocalZ"; WithPackagesSep=" "
-+fi
-+
-+if test "$with_bz2" != "no"; then
-+ case "$with_bz2" in
-+ yes | "" ) ;;
-+ * ) BZ2_PATH=$with_bz2 ;;
-+ esac
-+ if test -d "$BZ2_PATH"; then
-+ in_path=" in $BZ2_PATH"
-+ if test -z "$BZ2_INCLUDE" -a -d "$BZ2_PATH/include"; then
-+ BZ2_INCLUDE="-I$BZ2_PATH/include"
-+ fi
-+ if test -n "$BZ2_LIBPATH"; then
-+ :
-+ elif test -d "$BZ2_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $BZ2_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ BZ2_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $BZ2_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ elif test -d "$BZ2_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $BZ2_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ BZ2_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $BZ2_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ BZ2_LIBS="$BZ2_LIBPATH -lbz2 "
-+ else
-+ BZ2_INCLUDE=""
-+ BZ2_LIBS="-lbz2 "
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for libbz2$in_path" >&5
-+echo $ECHO_N "checking for libbz2$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_bz2+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ CPPFLAGS=" $BZ2_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$BZ2_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char cplus_demangle ();
-+#include <bzlib.h>
- int
- main ()
- {
--cplus_demangle ();
-+BZFILE* fp; char buf[1024]; int err;
-+ int n = BZ2_bzRead(&err, fp, buf, sizeof(buf))
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_cplus_demangle="-l$ac_lib"
--break
-+ ncbi_cv_lib_bz2=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+ ncbi_cv_lib_bz2=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-- done
- fi
--LIBS=$ac_func_search_save_LIBS
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_bz2" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_bz2" >&6; }
-+ if test "$ncbi_cv_lib_bz2" = "no"; then
-+ if test "${with_bz2:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-bz2 explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-bz2 explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_cplus_demangle" >&5
--echo "${ECHO_T}$ac_cv_search_cplus_demangle" >&6
--if test "$ac_cv_search_cplus_demangle" != no; then
-- test "$ac_cv_search_cplus_demangle" = "none required" || LIBS="$ac_cv_search_cplus_demangle $LIBS"
-+ fi
-+ if test "$with_bz2" = "no"; then
-+ BZ2_PATH="No_BZ2"
-+ BZ2_INCLUDE=
-+ BZ2_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
-+ BZ2_INCLUDE=" $BZ2_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBDEMANGLE 1
-+#define HAVE_LIBBZ2 1
- _ACEOF
-
-- test "x$ac_cv_search_cplus_demangle" = "xnone required" || DEMANGLE_LIBS=$ac_cv_search_cplus_demangle
- fi
-
-- LIBS=$saved_LIBS
-
--# Add to (orig_)LIBS if present for the sake of corelib and the
--# following call to AC_CHECK_FUNCS.
--if test -n "$DEMANGLE_LIBS$RT_LIBS"; then
-- LIBS="$DEMANGLE_LIBS $RT_LIBS $LIBS"
-- orig_LIBS="$DEMANGLE_LIBS $RT_LIBS $orig_LIBS"
--fi
-
-+if test -z "$BZ2_LIBS"; then
-+ bzlocal=util/compress/bzip2
-+ { echo "$as_me:$LINENO: using local bzlib copy in $bzlocal" >&5
-+echo "$as_me: using local bzlib copy in $bzlocal" >&6;}
-+ BZ2_PATH="<$bzlocal>"
-+ BZ2_INCLUDE="-I\$(includedir)/$bzlocal -I\$(includedir0)/$bzlocal"
-+ # BZ2_LIBS="-lbz2"
-+ BZ2_LIB="bz2"
-
--for ac_func in nanosleep sched_yield
--do
--as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+cat >>confdefs.h <<\_ACEOF
-+#define USE_LOCAL_BZLIB 1
-+_ACEOF
-+
-+ WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
-+ WithPackages="$WithPackages${WithPackagesSep}LocalBZ2"; WithPackagesSep=" "
-+fi
-+
-+if test -d "$LZO_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $LZO_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $LZO_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ LZO_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$LZO_PATH" in
-+ /*) ;;
-+ * ) LZO_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) LZO_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+fi
-+if test "$with_lzo" != "no"; then
-+ case "$with_lzo" in
-+ yes | "" ) ;;
-+ * ) LZO_PATH=$with_lzo ;;
-+ esac
-+ if test -d "$LZO_PATH"; then
-+ in_path=" in $LZO_PATH"
-+ if test -z "$LZO_INCLUDE" -a -d "$LZO_PATH/include"; then
-+ LZO_INCLUDE="-I$LZO_PATH/include"
-+ fi
-+ if test -n "$LZO_LIBPATH"; then
-+ :
-+ elif test -d "$LZO_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $LZO_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ LZO_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $LZO_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ elif test -d "$LZO_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $LZO_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ LZO_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $LZO_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ LZO_LIBS="$LZO_LIBPATH -llzo2 "
-+ else
-+ LZO_INCLUDE=""
-+ LZO_LIBS="-llzo2 "
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for liblzo2$in_path" >&5
-+echo $ECHO_N "checking for liblzo2$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_lzo+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-+ CPPFLAGS=" $LZO_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$LZO_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
-- For example, HP-UX 11i <limits.h> declares gettimeofday. */
--#define $ac_func innocuous_$ac_func
--
--/* System header to define __stub macros and hopefully few prototypes,
-- which can conflict with char $ac_func (); below.
-- Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-- <limits.h> exists even on freestanding compilers. */
--
--#ifdef __STDC__
--# include <limits.h>
--#else
--# include <assert.h>
--#endif
--
--#undef $ac_func
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--{
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char $ac_func ();
--/* The GNU C library defines this for functions which it implements
-- to always fail with ENOSYS. Some functions are actually named
-- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
--choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
--#endif
--
-+#include <lzo/lzo1x.h>
- int
- main ()
- {
--return f != $ac_func;
-+lzo_uint32 c = lzo_crc32(0, (const unsigned char*)"foo", 3);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- eval "$as_ac_var=yes"
-+ ncbi_cv_lib_lzo=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--eval "$as_ac_var=no"
-+ ncbi_cv_lib_lzo=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
--if test `eval echo '${'$as_ac_var'}'` = yes; then
-- cat >>confdefs.h <<_ACEOF
--#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_lzo" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_lzo" >&6; }
-+ if test "$ncbi_cv_lib_lzo" = "no"; then
-+ if test "${with_lzo:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-lzo explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-lzo explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ fi
-+ fi
-+ if test "$with_lzo" = "no"; then
-+ LZO_PATH="No_LZO"
-+ LZO_INCLUDE=
-+ LZO_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}LZO"; WithPackagesSep=" "
-+ LZO_INCLUDE=" $LZO_INCLUDE"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBLZO 1
- _ACEOF
-
- fi
--done
-
-
--# We need to include <iconv.h>, since some implementations rename the symbols.
--# This logic adapted from Bruno Haible's iconv.m4.
--echo "$as_me:$LINENO: checking for library containing iconv" >&5
--echo $ECHO_N "checking for library containing iconv... $ECHO_C" >&6
--if test "${ac_cv_search_iconv+set}" = set; then
-+
-+
-+if test -z "$PCRE_PATH" && pcre-config --version >/dev/null 2>&1; then
-+ p=`pcre-config --prefix`
-+ test "x$p" = "x/usr" || PCRE_PATH=$p
-+fi
-+if test "$with_pcre" != "no"; then
-+ case "$with_pcre" in
-+ yes | "" ) ;;
-+ * ) PCRE_PATH=$with_pcre ;;
-+ esac
-+ if test -d "$PCRE_PATH"; then
-+ in_path=" in $PCRE_PATH"
-+ if test -z "$PCRE_INCLUDE" -a -d "$PCRE_PATH/include"; then
-+ PCRE_INCLUDE="-I$PCRE_PATH/include"
-+ fi
-+ if test -n "$PCRE_LIBPATH"; then
-+ :
-+ elif test -d "$PCRE_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $PCRE_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ PCRE_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $PCRE_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ elif test -d "$PCRE_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $PCRE_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ PCRE_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $PCRE_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ PCRE_LIBS="$PCRE_LIBPATH -lpcre "
-+ else
-+ PCRE_INCLUDE=""
-+ PCRE_LIBS="-lpcre "
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for libpcre$in_path" >&5
-+echo $ECHO_N "checking for libpcre$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_pcre+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
--
-- ac_cv_search_iconv=no
-+ CPPFLAGS=" $PCRE_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$PCRE_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <stdlib.h>
-- #include <iconv.h>
-+#include <pcre.h>
- int
- main ()
- {
--iconv_t cd = iconv_open("","");
-- iconv(cd,NULL,NULL,NULL,NULL);
-- iconv_close(cd);
-+const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_iconv="none required"
-+ ncbi_cv_lib_pcre=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+ ncbi_cv_lib_pcre=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-- if test "$ac_cv_search_iconv" != "none required"; then
-- for l in iconv; do
-- LIBS="-l$l $orig_LIBS"
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <stdlib.h>
-- #include <iconv.h>
--int
--main ()
--{
--iconv_t cd = iconv_open("","");
-- iconv(cd,NULL,NULL,NULL,NULL);
-- iconv_close(cd);
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ac_cv_search_iconv=-l$l
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
-- LIBS="$orig_LIBS"
-- done
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_pcre" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_pcre" >&6; }
-+ if test "$ncbi_cv_lib_pcre" = "no"; then
-+ if test "${with_pcre:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-pcre explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-pcre explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
- fi
--echo "$as_me:$LINENO: result: $ac_cv_search_iconv" >&5
--echo "${ECHO_T}$ac_cv_search_iconv" >&6
--if test "x$ac_cv_search_iconv" != xno; then
-+ fi
-+ if test "$with_pcre" = "no"; then
-+ PCRE_PATH="No_PCRE"
-+ PCRE_INCLUDE=
-+ PCRE_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
-+ PCRE_INCLUDE=" $PCRE_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBICONV 1
-+#define HAVE_LIBPCRE 1
- _ACEOF
-
-- echo "$as_me:$LINENO: checking for iconv declaration" >&5
--echo $ECHO_N "checking for iconv declaration... $ECHO_C" >&6
-- if test "${am_cv_proto_iconv+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-+ fi
-
-- cat >conftest.$ac_ext <<_ACEOF
-
--#include <stdlib.h>
--#include <iconv.h>
--extern
--#ifdef __cplusplus
--"C"
--#endif
--#if defined(__STDC__) || defined(__cplusplus)
--size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
--#else
--size_t iconv();
--#endif
-
-+if test -z "$PCRE_LIBS"; then
-+ pcrelocal=util/regexp
-+ { echo "$as_me:$LINENO: using local PCRE copy in $pcrelocal" >&5
-+echo "$as_me: using local PCRE copy in $pcrelocal" >&6;}
-+ PCRE_PATH="<$pcrelocal>"
-+ PCRE_INCLUDE="-I\$(includedir)/$pcrelocal -I\$(includedir0)/$pcrelocal"
-+ # PCRE_LIBS="-lregexp"
-+ # PCREPOSIX_LIBS="-lregexp"
-+ PCRE_LIB="regexp"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define USE_LOCAL_PCRE 1
- _ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- am_cv_proto_iconv_arg1=""
-+
-+ WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
-+ WithPackages="$WithPackages${WithPackagesSep}LocalPCRE"; WithPackagesSep=" "
- else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
-+ PCREPOSIX_LIBS=`echo "$PCRE_LIBS" | sed -e 's/-lpcre/-lpcreposix -lpcre/'`
-+fi
-
--am_cv_proto_iconv_arg1="const"
-+## SSL/TLS libraries
-+case "$with_gcrypt" in
-+ no ) ac_cv_path_LIBGCRYPT_CONFIG=no ;;
-+ yes | '' ) ;;
-+ * ) GCRYPT_PATH=$with_gcrypt ;;
-+esac
-+if test -d "$GCRYPT_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $GCRYPT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $GCRYPT_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ GCRYPT_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$GCRYPT_PATH" in
-+ /*) ;;
-+ * ) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-- am_cv_proto_iconv="extern size_t iconv (iconv_t cd, $am_cv_proto_iconv_arg1 char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);"
-+ ;;
-+ /*) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
-+# Extract the first word of "libgcrypt-config", so it can be a program name with args.
-+set dummy libgcrypt-config; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_LIBGCRYPT_CONFIG+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ case $LIBGCRYPT_CONFIG in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_LIBGCRYPT_CONFIG="$LIBGCRYPT_CONFIG" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+as_dummy="${GCRYPT_BIN-$GCRYPT_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GCRYPT_PATH/bin${bit64_sfx}:$GCRYPT_PATH/bin:$PATH"
-+for as_dir in $as_dummy
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_LIBGCRYPT_CONFIG="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
-+done
-+done
-+IFS=$as_save_IFS
-
-- am_cv_proto_iconv=`echo "$am_cv_proto_iconv" | tr -s ' ' | sed -e 's/( /(/'`
-- echo "$as_me:$LINENO: result: ${ac_t:-
-- }$am_cv_proto_iconv" >&5
--echo "${ECHO_T}${ac_t:-
-- }$am_cv_proto_iconv" >&6
--
--cat >>confdefs.h <<_ACEOF
--#define ICONV_CONST $am_cv_proto_iconv_arg1
--_ACEOF
--
-- if test "x$ac_cv_search_iconv" != "xnone required"; then
-- ICONV_LIBS=$ac_cv_search_iconv
-+ ;;
-+esac
- fi
-+LIBGCRYPT_CONFIG=$ac_cv_path_LIBGCRYPT_CONFIG
-+if test -n "$LIBGCRYPT_CONFIG"; then
-+ { echo "$as_me:$LINENO: result: $LIBGCRYPT_CONFIG" >&5
-+echo "${ECHO_T}$LIBGCRYPT_CONFIG" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-
--### Third-party libraries
--
--usr_lib='[/usr]*/lib/*[amdsprcv]*[23469]*'
--no_usr_lib="s,-L$usr_lib ,,g;"
-
--if test "$with_z" != "no"; then
-- case "$with_z" in
-+if test "x$with_gcrypt" != xno; then
-+ if test -x "$LIBGCRYPT_CONFIG"; then
-+ if test -z "$GCRYPT_PATH"; then
-+ p=`libgcrypt-config --prefix`
-+ test "x$p" = "x/usr" || GCRYPT_PATH=$p
-+ fi
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ GCRYPT_LIBPATH=`$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
-+ else
-+ GCRYPT_LIBPATH=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
-+ case "$x" in
-+ -L*)
-+ GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
-+ done
-+ GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}"
-+ fi
-+ GCRYPT_INCLUDE=`$LIBGCRYPT_CONFIG --cflags`
-+ GCRYPT_CONFIG_LIBS="`$LIBGCRYPT_CONFIG --libs` $Z_LIBS"
-+ fi
-+else
-+ $as_unset GCRYPT_CONFIG_LIBS || test "${GCRYPT_CONFIG_LIBS+set}" != set || { GCRYPT_CONFIG_LIBS=; export GCRYPT_CONFIG_LIBS; }
-+fi
-+if test "$with_gcrypt" != "no"; then
-+ case "$with_gcrypt" in
- yes | "" ) ;;
-- * ) Z_PATH=$with_z ;;
-+ * ) GCRYPT_PATH=$with_gcrypt ;;
- esac
-- if test -d "$Z_PATH"; then
-- in_path=" in $Z_PATH"
-- if test -z "$Z_INCLUDE" -a -d "$Z_PATH/include"; then
-- Z_INCLUDE="-I$Z_PATH/include"
-+ if test -d "$GCRYPT_PATH"; then
-+ in_path=" in $GCRYPT_PATH"
-+ if test -z "$GCRYPT_INCLUDE" -a -d "$GCRYPT_PATH/include"; then
-+ GCRYPT_INCLUDE="-I$GCRYPT_PATH/include"
- fi
-- if test -n "$Z_LIBPATH"; then
-+ if test -n "$GCRYPT_LIBPATH"; then
- :
-- elif test -d "$Z_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$GCRYPT_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $Z_PATH/lib${bit64_sfx}; do
-+ for x in $GCRYPT_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- Z_LIBPATH="${ncbi_rp_L_flags}"
-+ GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $Z_PATH/lib${bit64_sfx}; do
-+ for x in $GCRYPT_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$Z_PATH/lib"; then
-+ elif test -d "$GCRYPT_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $Z_PATH/lib; do
-+ for x in $GCRYPT_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- Z_LIBPATH="${ncbi_rp_L_flags}"
-+ GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $Z_PATH/lib; do
-+ for x in $GCRYPT_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- Z_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- Z_LIBS="$Z_LIBPATH -lz "
-+ GCRYPT_LIBS="$GCRYPT_LIBPATH -lgcrypt $GCRYPT_CONFIG_LIBS"
- else
-- Z_INCLUDE=""
-- Z_LIBS="-lz "
-+ GCRYPT_INCLUDE=""
-+ GCRYPT_LIBS="-lgcrypt $GCRYPT_CONFIG_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libz$in_path" >&5
--echo $ECHO_N "checking for libz$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_z+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libgcrypt$in_path" >&5
-+echo $ECHO_N "checking for libgcrypt$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_gcrypt+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $Z_INCLUDE $orig_CPPFLAGS"
-- LIBS="$Z_LIBS $orig_LIBS"
-+ CPPFLAGS=" $GCRYPT_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$GCRYPT_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <zlib.h>
-+#include <gcrypt.h>
-+ #include <pthread.h>
-+ #include <errno.h>
-+ GCRY_THREAD_OPTION_PTHREAD_IMPL;
- int
- main ()
- {
--gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf))
-+gcry_control(GCRYCTL_SET_THREAD_CBS, &gcry_threads_pthread);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_z=yes
-+ ncbi_cv_lib_gcrypt=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_z=no
-+ ncbi_cv_lib_gcrypt=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_z" >&5
--echo "${ECHO_T}$ncbi_cv_lib_z" >&6
-- if test "$ncbi_cv_lib_z" = "no"; then
-- if test "${with_z:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-z explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-z explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gcrypt" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_gcrypt" >&6; }
-+ if test "$ncbi_cv_lib_gcrypt" = "no"; then
-+ if test "${with_gcrypt:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-gcrypt explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-gcrypt explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_z" = "no"; then
-- Z_PATH="No_Z"
-- Z_INCLUDE=
-- Z_LIBS=
-+ if test "$with_gcrypt" = "no"; then
-+ GCRYPT_PATH="No_GCRYPT"
-+ GCRYPT_INCLUDE=
-+ GCRYPT_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
-- Z_INCLUDE=" $Z_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}GCRYPT"; WithPackagesSep=" "
-+ GCRYPT_INCLUDE=" $GCRYPT_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBZ 1
-+#define HAVE_LIBGCRYPT 1
- _ACEOF
-
- fi
-
-
-
--if test -z "$Z_LIBS"; then
-- zlocal=util/compress/zlib
-- { echo "$as_me:$LINENO: using local zlib copy in $zlocal" >&5
--echo "$as_me: using local zlib copy in $zlocal" >&6;}
-- Z_PATH="<$zlocal>"
-- Z_INCLUDE="-I\$(includedir)/$zlocal -I\$(includedir0)/$zlocal"
-- # Z_LIBS="-lz"
-- Z_LIB="z"
-- # AC_DEFINE(USE_LOCAL_ZLIB, 1, [Define to 1 if using a local copy of zlib.])
-- WithPackages="$WithPackages${WithPackagesSep}Z"; WithPackagesSep=" "
-- WithPackages="$WithPackages${WithPackagesSep}LocalZ"; WithPackagesSep=" "
-+if test "x$with_gcrypt" != xno -a -n "$GCRYPT_CONFIG_LIBS"; then
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ GCRYPT_LIBS=`echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`
-+ else
-+ GCRYPT_LIBS=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
-+ case "$x" in
-+ -L*)
-+ GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
-+ done
-+ GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}"
-+ fi
- fi
-
--if test "$with_bz2" != "no"; then
-- case "$with_bz2" in
-+case "$with_gnutls" in
-+ no ) ac_cv_path_LIBGNUTLS_CONFIG=no ;;
-+ yes | '' ) ;;
-+ * ) GNUTLS_PATH=$with_gnutls ;;
-+esac
-+if test -d "$GNUTLS_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $GNUTLS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $GNUTLS_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ GNUTLS_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$GNUTLS_PATH" in
-+ /*) ;;
-+ * ) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ gnutls_config_path=${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin
-+else
-+ gnutls_config_path=$PATH
-+fi
-+# Extract the first word of "libgnutls-config", so it can be a program name with args.
-+set dummy libgnutls-config; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_LIBGNUTLS_CONFIG+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ case $LIBGNUTLS_CONFIG in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_LIBGNUTLS_CONFIG="$LIBGNUTLS_CONFIG" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+for as_dir in $gnutls_config_path
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_LIBGNUTLS_CONFIG="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
-+done
-+done
-+IFS=$as_save_IFS
-+
-+ ;;
-+esac
-+fi
-+LIBGNUTLS_CONFIG=$ac_cv_path_LIBGNUTLS_CONFIG
-+if test -n "$LIBGNUTLS_CONFIG"; then
-+ { echo "$as_me:$LINENO: result: $LIBGNUTLS_CONFIG" >&5
-+echo "${ECHO_T}$LIBGNUTLS_CONFIG" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+fi
-+
-+
-+
-+if test "x$with_gnutls" != xno; then
-+ if test -x "$LIBGNUTLS_CONFIG"; then
-+ if test -z "$GNUTLS_PATH"; then
-+ p=`libgnutls-config --prefix`
-+ test "x$p" = "x/usr" || GNUTLS_PATH=$p
-+ fi
-+ else
-+ LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls --static"
-+ $LIBGNUTLS_CONFIG --exists >/dev/null 2>&1 || LIBGNUTLS_CONFIG=no
-+ fi
-+ case "$LIBGNUTLS_CONFIG" in
-+ eval\ *)
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`
-+ else
-+ GNUTLS_LIBPATH=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`; do
-+ case "$x" in
-+ -L*)
-+ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
-+ done
-+ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
-+ fi
-+ ;;
-+ no)
-+ ;;
-+ *)
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
-+ else
-+ GNUTLS_LIBPATH=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
-+ case "$x" in
-+ -L*)
-+ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
-+ done
-+ GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
-+ fi
-+ ;;
-+ esac
-+
-+ if test "x$LIBGNUTLS_CONFIG" != xno; then
-+ GNUTLS_INCLUDE=`$LIBGNUTLS_CONFIG --cflags`
-+ GNUTLS_CONFIG_LIBS="`$LIBGNUTLS_CONFIG --libs` $Z_LIBS"
-+ fi
-+else
-+ $as_unset GNUTLS_CONFIG_LIBS || test "${GNUTLS_CONFIG_LIBS+set}" != set || { GNUTLS_CONFIG_LIBS=; export GNUTLS_CONFIG_LIBS; }
-+fi
-+if test "$with_gnutls" != "no"; then
-+ case "$with_gnutls" in
- yes | "" ) ;;
-- * ) BZ2_PATH=$with_bz2 ;;
-+ * ) GNUTLS_PATH=$with_gnutls ;;
- esac
-- if test -d "$BZ2_PATH"; then
-- in_path=" in $BZ2_PATH"
-- if test -z "$BZ2_INCLUDE" -a -d "$BZ2_PATH/include"; then
-- BZ2_INCLUDE="-I$BZ2_PATH/include"
-+ if test -d "$GNUTLS_PATH"; then
-+ in_path=" in $GNUTLS_PATH"
-+ if test -z "$GNUTLS_INCLUDE" -a -d "$GNUTLS_PATH/include"; then
-+ GNUTLS_INCLUDE="-I$GNUTLS_PATH/include"
- fi
-- if test -n "$BZ2_LIBPATH"; then
-+ if test -n "$GNUTLS_LIBPATH"; then
- :
-- elif test -d "$BZ2_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$GNUTLS_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $BZ2_PATH/lib${bit64_sfx}; do
-+ for x in $GNUTLS_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- BZ2_LIBPATH="${ncbi_rp_L_flags}"
-+ GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $BZ2_PATH/lib${bit64_sfx}; do
-+ for x in $GNUTLS_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$BZ2_PATH/lib"; then
-+ elif test -d "$GNUTLS_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $BZ2_PATH/lib; do
-+ for x in $GNUTLS_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- BZ2_LIBPATH="${ncbi_rp_L_flags}"
-+ GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $BZ2_PATH/lib; do
-+ for x in $GNUTLS_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- BZ2_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- BZ2_LIBS="$BZ2_LIBPATH -lbz2 "
-+ GNUTLS_LIBS="$GNUTLS_LIBPATH -lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
- else
-- BZ2_INCLUDE=""
-- BZ2_LIBS="-lbz2 "
-+ GNUTLS_INCLUDE=""
-+ GNUTLS_LIBS="-lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libbz2$in_path" >&5
--echo $ECHO_N "checking for libbz2$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_bz2+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libgnutls$in_path" >&5
-+echo $ECHO_N "checking for libgnutls$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_gnutls+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $BZ2_INCLUDE $orig_CPPFLAGS"
-- LIBS="$BZ2_LIBS $orig_LIBS"
-+ CPPFLAGS=" $GNUTLS_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$GNUTLS_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <bzlib.h>
-+#include <gnutls/gnutls.h>
- int
- main ()
- {
--BZFILE* fp; char buf[1024]; int err;
-- int n = BZ2_bzRead(&err, fp, buf, sizeof(buf))
-+gnutls_session_t s; gnutls_init(&s, GNUTLS_CLIENT);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_bz2=yes
-+ ncbi_cv_lib_gnutls=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_bz2=no
-+ ncbi_cv_lib_gnutls=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_bz2" >&5
--echo "${ECHO_T}$ncbi_cv_lib_bz2" >&6
-- if test "$ncbi_cv_lib_bz2" = "no"; then
-- if test "${with_bz2:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-bz2 explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-bz2 explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gnutls" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_gnutls" >&6; }
-+ if test "$ncbi_cv_lib_gnutls" = "no"; then
-+ if test "${with_gnutls:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-gnutls explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-gnutls explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_bz2" = "no"; then
-- BZ2_PATH="No_BZ2"
-- BZ2_INCLUDE=
-- BZ2_LIBS=
-+ if test "$with_gnutls" = "no"; then
-+ GNUTLS_PATH="No_GNUTLS"
-+ GNUTLS_INCLUDE=
-+ GNUTLS_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
-- BZ2_INCLUDE=" $BZ2_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}GNUTLS"; WithPackagesSep=" "
-+ GNUTLS_INCLUDE=" $GNUTLS_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBBZ2 1
-+#define HAVE_LIBGNUTLS 1
- _ACEOF
-
- fi
-
-
-
--if test -z "$BZ2_LIBS"; then
-- bzlocal=util/compress/bzip2
-- { echo "$as_me:$LINENO: using local bzlib copy in $bzlocal" >&5
--echo "$as_me: using local bzlib copy in $bzlocal" >&6;}
-- BZ2_PATH="<$bzlocal>"
-- BZ2_INCLUDE="-I\$(includedir)/$bzlocal -I\$(includedir0)/$bzlocal"
-- # BZ2_LIBS="-lbz2"
-- BZ2_LIB="bz2"
--
--cat >>confdefs.h <<\_ACEOF
--#define USE_LOCAL_BZLIB 1
--_ACEOF
--
-- WithPackages="$WithPackages${WithPackagesSep}BZ2"; WithPackagesSep=" "
-- WithPackages="$WithPackages${WithPackagesSep}LocalBZ2"; WithPackagesSep=" "
--fi
--
--: ${LZO_PATH=$NCBI/lzo2}
--if test -d "$LZO_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $LZO_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $LZO_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- LZO_PATH=$ncbi_fix_dir_tmp2
-+if test "x$with_gnutls" != xno -a -n "$GNUTLS_CONFIG_LIBS"; then
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ GNUTLS_LIBS=`echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`
- else
-- case "$LZO_PATH" in
-- /*) ;;
-- * ) LZO_PATH=$ncbi_fix_dir_tmp ;;
-+ GNUTLS_LIBS=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
-+ case "$x" in
-+ -L*)
-+ GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
- esac
-+ ncbi_rp_L_sep=" "
-+ done
-+ GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}"
- fi
-- ;;
-- /*) LZO_PATH=$ncbi_fix_dir_tmp ;;
-+ # Conservatively build against gcrypt if available even when gnutls
-+ # uses nettle instead, because gcrypt needs explicit initialization
-+ # to be thread-safe, but gnutls's headers don't indicate which
-+ # underlying crypto library it's actually using.
-+ case "$GNUTLS_INCLUDE" in
-+ *$GCRYPT_INCLUDE* ) ;;
-+ * ) GNUTLS_INCLUDE="$GNUTLS_INCLUDE $GCRYPT_INCLUDE" ;;
-+ esac
-+ case "$GNUTLS_LIBS" in
-+ *\ -lgcrypt* ) ;;
-+ * ) GNUTLS_LIBS="$GNUTLS_LIBS $GCRYPT_LIBS" ;;
- esac
- fi
--if test "$with_lzo" != "no"; then
-- case "$with_lzo" in
-+
-+if test "$with_openssl" != "no"; then
-+ case "$with_openssl" in
- yes | "" ) ;;
-- * ) LZO_PATH=$with_lzo ;;
-+ * ) OPENSSL_PATH=$with_openssl ;;
- esac
-- if test -d "$LZO_PATH"; then
-- in_path=" in $LZO_PATH"
-- if test -z "$LZO_INCLUDE" -a -d "$LZO_PATH/include"; then
-- LZO_INCLUDE="-I$LZO_PATH/include"
-+ if test -d "$OPENSSL_PATH"; then
-+ in_path=" in $OPENSSL_PATH"
-+ if test -z "$OPENSSL_INCLUDE" -a -d "$OPENSSL_PATH/include"; then
-+ OPENSSL_INCLUDE="-I$OPENSSL_PATH/include"
- fi
-- if test -n "$LZO_LIBPATH"; then
-+ if test -n "$OPENSSL_LIBPATH"; then
- :
-- elif test -d "$LZO_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$OPENSSL_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $LZO_PATH/lib${bit64_sfx}; do
-+ for x in $OPENSSL_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- LZO_LIBPATH="${ncbi_rp_L_flags}"
-+ OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $LZO_PATH/lib${bit64_sfx}; do
-+ for x in $OPENSSL_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$LZO_PATH/lib"; then
-+ elif test -d "$OPENSSL_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $LZO_PATH/lib; do
-+ for x in $OPENSSL_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- LZO_LIBPATH="${ncbi_rp_L_flags}"
-+ OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $LZO_PATH/lib; do
-+ for x in $OPENSSL_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- LZO_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- LZO_LIBS="$LZO_LIBPATH -llzo2 "
-+ OPENSSL_LIBS="$OPENSSL_LIBPATH -lssl -lcrypto"
- else
-- LZO_INCLUDE=""
-- LZO_LIBS="-llzo2 "
-+ OPENSSL_INCLUDE=""
-+ OPENSSL_LIBS="-lssl -lcrypto"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for liblzo2$in_path" >&5
--echo $ECHO_N "checking for liblzo2$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_lzo+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libssl$in_path" >&5
-+echo $ECHO_N "checking for libssl$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_openssl+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $LZO_INCLUDE $orig_CPPFLAGS"
-- LIBS="$LZO_LIBS $orig_LIBS"
-+ CPPFLAGS=" $OPENSSL_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$OPENSSL_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <lzo/lzo1x.h>
-+#include <openssl/ssl.h>
- int
- main ()
- {
--lzo_uint32 c = lzo_crc32(0, (const unsigned char*)"foo", 3);
-+SSL_library_init();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_lzo=yes
-+ ncbi_cv_lib_openssl=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_lzo=no
-+ ncbi_cv_lib_openssl=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_lzo" >&5
--echo "${ECHO_T}$ncbi_cv_lib_lzo" >&6
-- if test "$ncbi_cv_lib_lzo" = "no"; then
-- if test "${with_lzo:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-lzo explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-lzo explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_openssl" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_openssl" >&6; }
-+ if test "$ncbi_cv_lib_openssl" = "no"; then
-+ if test "${with_openssl:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-openssl explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-openssl explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_lzo" = "no"; then
-- LZO_PATH="No_LZO"
-- LZO_INCLUDE=
-- LZO_LIBS=
-+ if test "$with_openssl" = "no"; then
-+ OPENSSL_PATH="No_OPENSSL"
-+ OPENSSL_INCLUDE=
-+ OPENSSL_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}LZO"; WithPackagesSep=" "
-- LZO_INCLUDE=" $LZO_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}OPENSSL"; WithPackagesSep=" "
-+ OPENSSL_INCLUDE=" $OPENSSL_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBLZO 1
-+#define HAVE_LIBOPENSSL 1
- _ACEOF
-
- fi
-@@ -21639,1287 +26023,420 @@
-
-
-
--if test -z "$PCRE_PATH" && pcre-config --version >/dev/null 2>&1; then
-- p=`pcre-config --prefix`
-- test "x$p" = "x/usr" || PCRE_PATH=$p
-+OPENSSL_STATIC_LIBS=$OPENSSL_LIBS
-+for d in `echo " $OPENSSL_LIBS" | fmt -w 1 | sed -ne 's/^ *-L//p'` \
-+ /usr/local/lib${bit64_sfx} /usr/local/lib /usr/lib${bit64_sfx} /usr/lib; do
-+ if test -f $d/libssl.a -a -f $d/libcrypto.a; then
-+ OPENSSL_STATIC_LIBS="$d/libssl.a $d/libcrypto.a"
-+ break
-+ elif test -f $d/libssl.so -o -f $d/libssl.dylib; then
-+ break
- fi
--if test "$with_pcre" != "no"; then
-- case "$with_pcre" in
-+done
-+
-+if test -n "$GNUTLS_LIBS"; then
-+ TLS_INCLUDE=$GNUTLS_INCLUDE
-+ TLS_LIBS=$GNUTLS_LIBS
-+else
-+ TLS_INCLUDE=$OPENSSL_INCLUDE
-+ TLS_LIBS=$OPENSSL_LIBS
-+fi
-+
-+
-+case "$with_krb5" in
-+ no ) ac_cv_path_KRB5_CONFIG=no ;;
-+ yes | '' ) : ${KRB5_PATH=/usr/kerberos} ;;
-+ * ) KRB5_PATH=$with_krb5 ;;
-+esac
-+# Extract the first word of "krb5-config", so it can be a program name with args.
-+set dummy krb5-config; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_KRB5_CONFIG+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ case $KRB5_CONFIG in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_KRB5_CONFIG="$KRB5_CONFIG" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+as_dummy="${KRB5_BIN-$KRB5_PATH/bin}:$PATH"
-+for as_dir in $as_dummy
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_KRB5_CONFIG="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
-+done
-+done
-+IFS=$as_save_IFS
-+
-+ ;;
-+esac
-+fi
-+KRB5_CONFIG=$ac_cv_path_KRB5_CONFIG
-+if test -n "$KRB5_CONFIG"; then
-+ { echo "$as_me:$LINENO: result: $KRB5_CONFIG" >&5
-+echo "${ECHO_T}$KRB5_CONFIG" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+fi
-+
-+
-+
-+if test "x$with_krb5" != xno; then
-+ if test -x "$KRB5_CONFIG"; then
-+ KRB5_PATH=`$KRB5_CONFIG --prefix`
-+ KRB5_INCLUDE=`$KRB5_CONFIG --cflags | \
-+ sed -e 's/$/ /; s,-I/usr/include ,,'`
-+ KRB5_CONFIG_LIBS=`$KRB5_CONFIG --libs gssapi | \
-+ sed -e 's/^/ /; s/ -[^Ll][^ ]*//g'`
-+ fi
-+else
-+ KRB5_CONFIG_LIBS=$KRB5_LIBS
-+fi
-+if test "$with_krb5" != "no"; then
-+ case "$with_krb5" in
- yes | "" ) ;;
-- * ) PCRE_PATH=$with_pcre ;;
-+ * ) KRB5_PATH=$with_krb5 ;;
- esac
-- if test -d "$PCRE_PATH"; then
-- in_path=" in $PCRE_PATH"
-- if test -z "$PCRE_INCLUDE" -a -d "$PCRE_PATH/include"; then
-- PCRE_INCLUDE="-I$PCRE_PATH/include"
-+ if test -d "$KRB5_PATH"; then
-+ in_path=" in $KRB5_PATH"
-+ if test -z "$KRB5_INCLUDE" -a -d "$KRB5_PATH/include"; then
-+ KRB5_INCLUDE="-I$KRB5_PATH/include"
- fi
-- if test -n "$PCRE_LIBPATH"; then
-+ if test -n "$KRB5_LIBPATH"; then
- :
-- elif test -d "$PCRE_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$KRB5_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $PCRE_PATH/lib${bit64_sfx}; do
-+ for x in $KRB5_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- PCRE_LIBPATH="${ncbi_rp_L_flags}"
-+ KRB5_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $PCRE_PATH/lib${bit64_sfx}; do
-+ for x in $KRB5_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$PCRE_PATH/lib"; then
-+ elif test -d "$KRB5_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $PCRE_PATH/lib; do
-+ for x in $KRB5_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- PCRE_LIBPATH="${ncbi_rp_L_flags}"
-+ KRB5_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $PCRE_PATH/lib; do
-+ for x in $KRB5_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- PCRE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- PCRE_LIBS="$PCRE_LIBPATH -lpcre "
-+ KRB5_LIBS="$KRB5_LIBPATH -lgssapi_krb5 $KRB5_CONFIG_LIBS"
- else
-- PCRE_INCLUDE=""
-- PCRE_LIBS="-lpcre "
-+ KRB5_INCLUDE=""
-+ KRB5_LIBS="-lgssapi_krb5 $KRB5_CONFIG_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libpcre$in_path" >&5
--echo $ECHO_N "checking for libpcre$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_pcre+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libgssapi_krb5$in_path" >&5
-+echo $ECHO_N "checking for libgssapi_krb5$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_krb5+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $PCRE_INCLUDE $orig_CPPFLAGS"
-- LIBS="$PCRE_LIBS $orig_LIBS"
-+ CPPFLAGS=" $KRB5_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$KRB5_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <pcre.h>
-+#include <time.h>
-+extern "C" {
-+#include <gssapi/gssapi_krb5.h>
-+}
- int
- main ()
- {
--const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s);
-+OM_uint32 min_stat;
-+ gss_buffer_desc buf;
-+ gss_release_buffer(&min_stat, &buf);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_pcre=yes
-+ ncbi_cv_lib_krb5=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_pcre=no
-+ ncbi_cv_lib_krb5=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_pcre" >&5
--echo "${ECHO_T}$ncbi_cv_lib_pcre" >&6
-- if test "$ncbi_cv_lib_pcre" = "no"; then
-- if test "${with_pcre:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-pcre explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-pcre explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_krb5" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_krb5" >&6; }
-+ if test "$ncbi_cv_lib_krb5" = "no"; then
-+ if test "${with_krb5:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-krb5 explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-krb5 explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_pcre" = "no"; then
-- PCRE_PATH="No_PCRE"
-- PCRE_INCLUDE=
-- PCRE_LIBS=
-+ if test "$with_krb5" = "no"; then
-+ KRB5_PATH="No_KRB5"
-+ KRB5_INCLUDE=
-+ KRB5_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
-- PCRE_INCLUDE=" $PCRE_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBPCRE 1
--_ACEOF
--
-- fi
--
--
--
--if test -z "$PCRE_LIBS"; then
-- pcrelocal=util/regexp
-- { echo "$as_me:$LINENO: using local PCRE copy in $pcrelocal" >&5
--echo "$as_me: using local PCRE copy in $pcrelocal" >&6;}
-- PCRE_PATH="<$pcrelocal>"
-- PCRE_INCLUDE="-I\$(includedir)/$pcrelocal -I\$(includedir0)/$pcrelocal"
-- # PCRE_LIBS="-lregexp"
-- # PCREPOSIX_LIBS="-lregexp"
-- PCRE_LIB="regexp"
-+ WithPackages="$WithPackages${WithPackagesSep}KRB5"; WithPackagesSep=" "
-+ KRB5_INCLUDE=" $KRB5_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define USE_LOCAL_PCRE 1
-+#define HAVE_LIBKRB5 1
- _ACEOF
-
-- WithPackages="$WithPackages${WithPackagesSep}PCRE"; WithPackagesSep=" "
-- WithPackages="$WithPackages${WithPackagesSep}LocalPCRE"; WithPackagesSep=" "
--else
-- PCREPOSIX_LIBS=`echo "$PCRE_LIBS" | sed -e 's/-lpcre/-lpcreposix -lpcre/'`
--fi
--
--## SSL/TLS libraries
--case "$with_gcrypt" in
-- no ) ac_cv_path_LIBGCRYPT_CONFIG=no ;;
-- yes | '' ) : ${GCRYPT_PATH=$NCBI/gcrypt} ;;
-- * ) GCRYPT_PATH=$with_gcrypt ;;
--esac
--if test -d "$GCRYPT_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $GCRYPT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $GCRYPT_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- GCRYPT_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$GCRYPT_PATH" in
-- /*) ;;
-- * ) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) GCRYPT_PATH=$ncbi_fix_dir_tmp ;;
-- esac
--fi
--# Extract the first word of "libgcrypt-config", so it can be a program name with args.
--set dummy libgcrypt-config; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_path_LIBGCRYPT_CONFIG+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- case $LIBGCRYPT_CONFIG in
-- [\\/]* | ?:[\\/]*)
-- ac_cv_path_LIBGCRYPT_CONFIG="$LIBGCRYPT_CONFIG" # Let the user override the test with a path.
-- ;;
-- *)
-- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--as_dummy="${GCRYPT_BIN-$GCRYPT_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GCRYPT_PATH/bin${bit64_sfx}:$GCRYPT_PATH/bin:$PATH"
--for as_dir in $as_dummy
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_path_LIBGCRYPT_CONFIG="$as_dir/$ac_word$ac_exec_ext"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
-- fi
--done
--done
--
-- ;;
--esac
- fi
--LIBGCRYPT_CONFIG=$ac_cv_path_LIBGCRYPT_CONFIG
-
--if test -n "$LIBGCRYPT_CONFIG"; then
-- echo "$as_me:$LINENO: result: $LIBGCRYPT_CONFIG" >&5
--echo "${ECHO_T}$LIBGCRYPT_CONFIG" >&6
--else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
--fi
-
-
--if test "x$with_gcrypt" != xno; then
-- if test -x "$LIBGCRYPT_CONFIG"; then
-- if test -z "$GCRYPT_PATH"; then
-- p=`libgcrypt-config --prefix`
-- test "x$p" = "x/usr" || GCRYPT_PATH=$p
-- fi
-+if test "x$with_krb5" != xno; then
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- GCRYPT_LIBPATH=`$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
-+ KRB5_LIBS=`echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`
- else
-- GCRYPT_LIBPATH=
-+ KRB5_LIBS=
- ncbi_rp_L_sep=
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$LIBGCRYPT_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
-+ for x in `echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
- case "$x" in
- -L*)
-- GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_L_sep}$x"
-+ KRB5_LIBS="$KRB5_LIBS${ncbi_rp_L_sep}$x"
- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- ;;
- *)
-- GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
- ;;
- esac
- ncbi_rp_L_sep=" "
- done
-- GCRYPT_LIBPATH="$GCRYPT_LIBPATH${ncbi_rp_R_flags}"
-- fi
-- GCRYPT_INCLUDE=`$LIBGCRYPT_CONFIG --cflags`
-- GCRYPT_CONFIG_LIBS="`$LIBGCRYPT_CONFIG --libs` $Z_LIBS"
-+ KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}"
- fi
--else
-- $as_unset GCRYPT_CONFIG_LIBS || test "${GCRYPT_CONFIG_LIBS+set}" != set || { GCRYPT_CONFIG_LIBS=; export GCRYPT_CONFIG_LIBS; }
- fi
--if test "$with_gcrypt" != "no"; then
-- case "$with_gcrypt" in
-+
-+
-+if test "$with_curl" != "no"; then
-+ case "$with_curl" in
- yes | "" ) ;;
-- * ) GCRYPT_PATH=$with_gcrypt ;;
-+ * ) CURL_PATH=$with_curl ;;
- esac
-- if test -d "$GCRYPT_PATH"; then
-- in_path=" in $GCRYPT_PATH"
-- if test -z "$GCRYPT_INCLUDE" -a -d "$GCRYPT_PATH/include"; then
-- GCRYPT_INCLUDE="-I$GCRYPT_PATH/include"
-+ if test -d "$CURL_PATH"; then
-+ in_path=" in $CURL_PATH"
-+ if test -z "$CURL_INCLUDE" -a -d "$CURL_PATH/include"; then
-+ CURL_INCLUDE="-I$CURL_PATH/include"
- fi
-- if test -n "$GCRYPT_LIBPATH"; then
-+ if test -n "$CURL_LIBPATH"; then
- :
-- elif test -d "$GCRYPT_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$CURL_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $GCRYPT_PATH/lib${bit64_sfx}; do
-+ for x in $CURL_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
-+ CURL_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $GCRYPT_PATH/lib${bit64_sfx}; do
-+ for x in $CURL_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$GCRYPT_PATH/lib"; then
-+ elif test -d "$CURL_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $GCRYPT_PATH/lib; do
-+ for x in $CURL_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- GCRYPT_LIBPATH="${ncbi_rp_L_flags}"
-+ CURL_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $GCRYPT_PATH/lib; do
-+ for x in $CURL_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- GCRYPT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- GCRYPT_LIBS="$GCRYPT_LIBPATH -lgcrypt $GCRYPT_CONFIG_LIBS"
-+ CURL_LIBS="$CURL_LIBPATH -lcurl "
- else
-- GCRYPT_INCLUDE=""
-- GCRYPT_LIBS="-lgcrypt $GCRYPT_CONFIG_LIBS"
-+ CURL_INCLUDE=""
-+ CURL_LIBS="-lcurl "
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libgcrypt$in_path" >&5
--echo $ECHO_N "checking for libgcrypt$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_gcrypt+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libcurl$in_path" >&5
-+echo $ECHO_N "checking for libcurl$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_curl+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $GCRYPT_INCLUDE $orig_CPPFLAGS"
-- LIBS="$GCRYPT_LIBS $orig_LIBS"
-+ CPPFLAGS=" $CURL_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$CURL_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <gcrypt.h>
-- #include <pthread.h>
-- #include <errno.h>
-- GCRY_THREAD_OPTION_PTHREAD_IMPL;
-+#include <curl/curl.h>
- int
- main ()
- {
--gcry_control(GCRYCTL_SET_THREAD_CBS, &gcry_threads_pthread);
-+char* v = curl_version();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_gcrypt=yes
-+ ncbi_cv_lib_curl=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_gcrypt=no
-+ ncbi_cv_lib_curl=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_gcrypt" >&5
--echo "${ECHO_T}$ncbi_cv_lib_gcrypt" >&6
-- if test "$ncbi_cv_lib_gcrypt" = "no"; then
-- if test "${with_gcrypt:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-gcrypt explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-gcrypt explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_curl" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_curl" >&6; }
-+ if test "$ncbi_cv_lib_curl" = "no"; then
-+ if test "${with_curl:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-curl explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-curl explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_gcrypt" = "no"; then
-- GCRYPT_PATH="No_GCRYPT"
-- GCRYPT_INCLUDE=
-- GCRYPT_LIBS=
-+ if test "$with_curl" = "no"; then
-+ CURL_PATH="No_CURL"
-+ CURL_INCLUDE=
-+ CURL_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}GCRYPT"; WithPackagesSep=" "
-- GCRYPT_INCLUDE=" $GCRYPT_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}CURL"; WithPackagesSep=" "
-+ CURL_INCLUDE=" $CURL_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBGCRYPT 1
--_ACEOF
--
-- fi
--
--
--
--if test "x$with_gcrypt" != xno -a -n "$GCRYPT_CONFIG_LIBS"; then
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- GCRYPT_LIBS=`echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`
-- else
-- GCRYPT_LIBS=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `echo $GCRYPT_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
-- case "$x" in
-- -L*)
-- GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-- done
-- GCRYPT_LIBS="$GCRYPT_LIBS${ncbi_rp_R_flags}"
-- fi
--fi
--
--case "$with_gnutls" in
-- no ) ac_cv_path_LIBGNUTLS_CONFIG=no ;;
-- yes | '' ) : ${GNUTLS_PATH=$NCBI/gnutls} ;;
-- * ) GNUTLS_PATH=$with_gnutls ;;
--esac
--if test -d "$GNUTLS_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $GNUTLS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $GNUTLS_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- GNUTLS_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$GNUTLS_PATH" in
-- /*) ;;
-- * ) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) GNUTLS_PATH=$ncbi_fix_dir_tmp ;;
-- esac
--fi
--# Extract the first word of "libgnutls-config", so it can be a program name with args.
--set dummy libgnutls-config; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_path_LIBGNUTLS_CONFIG+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- case $LIBGNUTLS_CONFIG in
-- [\\/]* | ?:[\\/]*)
-- ac_cv_path_LIBGNUTLS_CONFIG="$LIBGNUTLS_CONFIG" # Let the user override the test with a path.
-- ;;
-- *)
-- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--as_dummy="${GNUTLS_BIN-$GNUTLS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/bin}:$GNUTLS_PATH/bin${bit64_sfx}:$GNUTLS_PATH/bin:$PATH"
--for as_dir in $as_dummy
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_path_LIBGNUTLS_CONFIG="$as_dir/$ac_word$ac_exec_ext"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
-- fi
--done
--done
--
-- ;;
--esac
--fi
--LIBGNUTLS_CONFIG=$ac_cv_path_LIBGNUTLS_CONFIG
--
--if test -n "$LIBGNUTLS_CONFIG"; then
-- echo "$as_me:$LINENO: result: $LIBGNUTLS_CONFIG" >&5
--echo "${ECHO_T}$LIBGNUTLS_CONFIG" >&6
--else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
--fi
--
--
--if test "x$with_gnutls" != xno; then
-- if test -x "$LIBGNUTLS_CONFIG"; then
-- if test -z "$GNUTLS_PATH"; then
-- p=`libgnutls-config --prefix`
-- test "x$p" = "x/usr" || GNUTLS_PATH=$p
-- fi
-- else
-- LIBGNUTLS_CONFIG="eval PKG_CONFIG_PATH=\"$GNUTLS_PATH/lib/pkgconfig\" pkg-config gnutls"
-- $LIBGNUTLS_CONFIG --exists >/dev/null 2>&1 || LIBGNUTLS_CONFIG=no
-- fi
-- case "$LIBGNUTLS_CONFIG" in
-- eval\ *)
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`
-- else
-- GNUTLS_LIBPATH=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$LIBGNUTLS_CONFIG --libs-only-L | sed -e ""`; do
-- case "$x" in
-- -L*)
-- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-- done
-- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
-- fi
-- ;;
-- no)
-- ;;
-- *)
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- GNUTLS_LIBPATH=`$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`
-- else
-- GNUTLS_LIBPATH=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$LIBGNUTLS_CONFIG --exec-prefix | sed -e "s,^,-L,; s,$,/lib,;"`; do
-- case "$x" in
-- -L*)
-- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-- done
-- GNUTLS_LIBPATH="$GNUTLS_LIBPATH${ncbi_rp_R_flags}"
-- fi
-- ;;
-- esac
--
-- if test "x$LIBGNUTLS_CONFIG" != xno; then
-- GNUTLS_INCLUDE=`$LIBGNUTLS_CONFIG --cflags`
-- GNUTLS_CONFIG_LIBS="`$LIBGNUTLS_CONFIG --libs` $Z_LIBS"
-- fi
--else
-- $as_unset GNUTLS_CONFIG_LIBS || test "${GNUTLS_CONFIG_LIBS+set}" != set || { GNUTLS_CONFIG_LIBS=; export GNUTLS_CONFIG_LIBS; }
--fi
--if test "$with_gnutls" != "no"; then
-- case "$with_gnutls" in
-- yes | "" ) ;;
-- * ) GNUTLS_PATH=$with_gnutls ;;
-- esac
-- if test -d "$GNUTLS_PATH"; then
-- in_path=" in $GNUTLS_PATH"
-- if test -z "$GNUTLS_INCLUDE" -a -d "$GNUTLS_PATH/include"; then
-- GNUTLS_INCLUDE="-I$GNUTLS_PATH/include"
-- fi
-- if test -n "$GNUTLS_LIBPATH"; then
-- :
-- elif test -d "$GNUTLS_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $GNUTLS_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $GNUTLS_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- elif test -d "$GNUTLS_PATH/lib"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $GNUTLS_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- GNUTLS_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $GNUTLS_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- GNUTLS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- fi
-- GNUTLS_LIBS="$GNUTLS_LIBPATH -lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
-- else
-- GNUTLS_INCLUDE=""
-- GNUTLS_LIBS="-lgnutls $GNUTLS_CONFIG_LIBS $GCRYPT_LIBS"
-- in_path=
-- fi
-- echo "$as_me:$LINENO: checking for libgnutls$in_path" >&5
--echo $ECHO_N "checking for libgnutls$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_gnutls+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- CPPFLAGS=" $GNUTLS_INCLUDE $orig_CPPFLAGS"
-- LIBS="$GNUTLS_LIBS $orig_LIBS"
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <gnutls/gnutls.h>
--int
--main ()
--{
--gnutls_session_t s; gnutls_init(&s, GNUTLS_CLIENT);
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_lib_gnutls=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_gnutls=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_gnutls" >&5
--echo "${ECHO_T}$ncbi_cv_lib_gnutls" >&6
-- if test "$ncbi_cv_lib_gnutls" = "no"; then
-- if test "${with_gnutls:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-gnutls explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-gnutls explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- fi
-- if test "$with_gnutls" = "no"; then
-- GNUTLS_PATH="No_GNUTLS"
-- GNUTLS_INCLUDE=
-- GNUTLS_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}GNUTLS"; WithPackagesSep=" "
-- GNUTLS_INCLUDE=" $GNUTLS_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBGNUTLS 1
--_ACEOF
--
-- fi
--
--
--
--if test "x$with_gnutls" != xno -a -n "$GNUTLS_CONFIG_LIBS"; then
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- GNUTLS_LIBS=`echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`
-- else
-- GNUTLS_LIBS=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `echo $GNUTLS_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
-- case "$x" in
-- -L*)
-- GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-- done
-- GNUTLS_LIBS="$GNUTLS_LIBS${ncbi_rp_R_flags}"
-- fi
-- case "$GNUTLS_INCLUDE" in
-- *$GCRYPT_INCLUDE* ) ;;
-- * ) GNUTLS_INCLUDE="$GNUTLS_INCLUDE $GCRYPT_INCLUDE" ;;
-- esac
-- case "$GNUTLS_LIBS" in
-- *\ -lgcrypt* ) ;;
-- * ) GNUTLS_LIBS="$GNUTLS_LIBS $GCRYPT_LIBS" ;;
-- esac
--fi
--
--if test "$with_openssl" != "no"; then
-- case "$with_openssl" in
-- yes | "" ) ;;
-- * ) OPENSSL_PATH=$with_openssl ;;
-- esac
-- if test -d "$OPENSSL_PATH"; then
-- in_path=" in $OPENSSL_PATH"
-- if test -z "$OPENSSL_INCLUDE" -a -d "$OPENSSL_PATH/include"; then
-- OPENSSL_INCLUDE="-I$OPENSSL_PATH/include"
-- fi
-- if test -n "$OPENSSL_LIBPATH"; then
-- :
-- elif test -d "$OPENSSL_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $OPENSSL_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $OPENSSL_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- elif test -d "$OPENSSL_PATH/lib"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $OPENSSL_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- OPENSSL_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $OPENSSL_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- OPENSSL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- fi
-- OPENSSL_LIBS="$OPENSSL_LIBPATH -lssl -lcrypto"
-- else
-- OPENSSL_INCLUDE=""
-- OPENSSL_LIBS="-lssl -lcrypto"
-- in_path=
-- fi
-- echo "$as_me:$LINENO: checking for libssl$in_path" >&5
--echo $ECHO_N "checking for libssl$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_openssl+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- CPPFLAGS=" $OPENSSL_INCLUDE $orig_CPPFLAGS"
-- LIBS="$OPENSSL_LIBS $orig_LIBS"
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <openssl/ssl.h>
--int
--main ()
--{
--SSL_library_init();
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_lib_openssl=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_openssl=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_openssl" >&5
--echo "${ECHO_T}$ncbi_cv_lib_openssl" >&6
-- if test "$ncbi_cv_lib_openssl" = "no"; then
-- if test "${with_openssl:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-openssl explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-openssl explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- fi
-- if test "$with_openssl" = "no"; then
-- OPENSSL_PATH="No_OPENSSL"
-- OPENSSL_INCLUDE=
-- OPENSSL_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}OPENSSL"; WithPackagesSep=" "
-- OPENSSL_INCLUDE=" $OPENSSL_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBOPENSSL 1
--_ACEOF
--
-- fi
--
--
--
--
--OPENSSL_STATIC_LIBS=$OPENSSL_LIBS
--for d in `echo " $OPENSSL_LIBS" | fmt -w 1 | sed -ne 's/^ *-L//p'` \
-- /usr/local/lib${bit64_sfx} /usr/local/lib /usr/lib${bit64_sfx} /usr/lib; do
-- if test -f $d/libssl.a -a -f $d/libcrypto.a; then
-- OPENSSL_STATIC_LIBS="$d/libssl.a $d/libcrypto.a"
-- break
-- elif test -f $d/libssl.so -o -f $d/libssl.dylib; then
-- break
-- fi
--done
--
--if test -n "$GNUTLS_LIBS"; then
-- TLS_INCLUDE=$GNUTLS_INCLUDE
-- TLS_LIBS=$GNUTLS_LIBS
--else
-- TLS_INCLUDE=$OPENSSL_INCLUDE
-- TLS_LIBS=$OPENSSL_LIBS
--fi
--
--
--case "$with_krb5" in
-- no ) ac_cv_path_KRB5_CONFIG=no ;;
-- yes | '' ) : ${KRB5_PATH=/usr/kerberos} ;;
-- * ) KRB5_PATH=$with_krb5 ;;
--esac
--# Extract the first word of "krb5-config", so it can be a program name with args.
--set dummy krb5-config; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_path_KRB5_CONFIG+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- case $KRB5_CONFIG in
-- [\\/]* | ?:[\\/]*)
-- ac_cv_path_KRB5_CONFIG="$KRB5_CONFIG" # Let the user override the test with a path.
-- ;;
-- *)
-- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--as_dummy="${KRB5_BIN-$KRB5_PATH/bin}:$PATH"
--for as_dir in $as_dummy
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_path_KRB5_CONFIG="$as_dir/$ac_word$ac_exec_ext"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
-- fi
--done
--done
--
-- ;;
--esac
--fi
--KRB5_CONFIG=$ac_cv_path_KRB5_CONFIG
--
--if test -n "$KRB5_CONFIG"; then
-- echo "$as_me:$LINENO: result: $KRB5_CONFIG" >&5
--echo "${ECHO_T}$KRB5_CONFIG" >&6
--else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
--fi
--
--
--if test "x$with_krb5" != xno; then
-- if test -x "$KRB5_CONFIG"; then
-- KRB5_PATH=`$KRB5_CONFIG --prefix`
-- KRB5_INCLUDE=`$KRB5_CONFIG --cflags | \
-- sed -e 's/$/ /; s,-I/usr/include ,,'`
-- KRB5_CONFIG_LIBS=`$KRB5_CONFIG --libs gssapi | \
-- sed -e 's/^/ /; s/ -[^Ll][^ ]*//g'`
-- fi
--else
-- KRB5_CONFIG_LIBS=$KRB5_LIBS
--fi
--if test "$with_krb5" != "no"; then
-- case "$with_krb5" in
-- yes | "" ) ;;
-- * ) KRB5_PATH=$with_krb5 ;;
-- esac
-- if test -d "$KRB5_PATH"; then
-- in_path=" in $KRB5_PATH"
-- if test -z "$KRB5_INCLUDE" -a -d "$KRB5_PATH/include"; then
-- KRB5_INCLUDE="-I$KRB5_PATH/include"
-- fi
-- if test -n "$KRB5_LIBPATH"; then
-- :
-- elif test -d "$KRB5_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $KRB5_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- KRB5_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $KRB5_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- elif test -d "$KRB5_PATH/lib"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $KRB5_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- KRB5_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $KRB5_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- KRB5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- fi
-- KRB5_LIBS="$KRB5_LIBPATH -lgssapi_krb5 $KRB5_CONFIG_LIBS"
-- else
-- KRB5_INCLUDE=""
-- KRB5_LIBS="-lgssapi_krb5 $KRB5_CONFIG_LIBS"
-- in_path=
-- fi
-- echo "$as_me:$LINENO: checking for libgssapi_krb5$in_path" >&5
--echo $ECHO_N "checking for libgssapi_krb5$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_krb5+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- CPPFLAGS=" $KRB5_INCLUDE $orig_CPPFLAGS"
-- LIBS="$KRB5_LIBS $orig_LIBS"
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <time.h>
--extern "C" {
--#include <gssapi/gssapi_krb5.h>
--}
--int
--main ()
--{
--OM_uint32 min_stat;
-- gss_buffer_desc buf;
-- gss_release_buffer(&min_stat, &buf);
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_lib_krb5=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_krb5=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_krb5" >&5
--echo "${ECHO_T}$ncbi_cv_lib_krb5" >&6
-- if test "$ncbi_cv_lib_krb5" = "no"; then
-- if test "${with_krb5:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-krb5 explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-krb5 explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- fi
-- if test "$with_krb5" = "no"; then
-- KRB5_PATH="No_KRB5"
-- KRB5_INCLUDE=
-- KRB5_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}KRB5"; WithPackagesSep=" "
-- KRB5_INCLUDE=" $KRB5_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBKRB5 1
--_ACEOF
--
-- fi
--
--
--
--if test "x$with_krb5" != xno; then
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- KRB5_LIBS=`echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`
-- else
-- KRB5_LIBS=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `echo $KRB5_CONFIG_LIBS | sed -e "$no_usr_lib"`; do
-- case "$x" in
-- -L*)
-- KRB5_LIBS="$KRB5_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-- done
-- KRB5_LIBS="$KRB5_LIBS${ncbi_rp_R_flags}"
-- fi
--fi
--
--
--if test "$with_curl" != "no"; then
-- case "$with_curl" in
-- yes | "" ) ;;
-- * ) CURL_PATH=$with_curl ;;
-- esac
-- if test -d "$CURL_PATH"; then
-- in_path=" in $CURL_PATH"
-- if test -z "$CURL_INCLUDE" -a -d "$CURL_PATH/include"; then
-- CURL_INCLUDE="-I$CURL_PATH/include"
-- fi
-- if test -n "$CURL_LIBPATH"; then
-- :
-- elif test -d "$CURL_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $CURL_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- CURL_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $CURL_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- elif test -d "$CURL_PATH/lib"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $CURL_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- CURL_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $CURL_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- CURL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- fi
-- CURL_LIBS="$CURL_LIBPATH -lcurl "
-- else
-- CURL_INCLUDE=""
-- CURL_LIBS="-lcurl "
-- in_path=
-- fi
-- echo "$as_me:$LINENO: checking for libcurl$in_path" >&5
--echo $ECHO_N "checking for libcurl$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_curl+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- CPPFLAGS=" $CURL_INCLUDE $orig_CPPFLAGS"
-- LIBS="$CURL_LIBS $orig_LIBS"
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <curl/curl.h>
--int
--main ()
--{
--char* v = curl_version();
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_lib_curl=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_curl=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_curl" >&5
--echo "${ECHO_T}$ncbi_cv_lib_curl" >&6
-- if test "$ncbi_cv_lib_curl" = "no"; then
-- if test "${with_curl:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-curl explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-curl explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- fi
-- if test "$with_curl" = "no"; then
-- CURL_PATH="No_CURL"
-- CURL_INCLUDE=
-- CURL_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}CURL"; WithPackagesSep=" "
-- CURL_INCLUDE=" $CURL_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBCURL 1
-+#define HAVE_LIBCURL 1
- _ACEOF
-
- fi
-@@ -23074,8 +26591,8 @@
- SYBASE_LIBPATH="$SYBASE_PATH/${sybase_lib}"
- syb_sfx=$bit64_sfx
- if test "$with_mt" = "yes" ; then
-- echo "$as_me:$LINENO: checking for reentrant Sybase libraries" >&5
--echo $ECHO_N "checking for reentrant Sybase libraries... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for reentrant Sybase libraries" >&5
-+echo $ECHO_N "checking for reentrant Sybase libraries... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_sybase_r+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23085,8 +26602,8 @@
- ncbi_cv_lib_sybase_r=no
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase_r" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sybase_r" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase_r" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sybase_r" >&6; }
- if test $ncbi_cv_lib_sybase_r = yes; then
- syb_sfx=_r$bit64_sfx
- fi
-@@ -23164,8 +26681,8 @@
- SYBASE_DBLIBS="$SYBASE_LPATH $SYBASE_DBLIBS"
- SYBASE_DLLS="$SYBASE_DLLLIST"
-
-- echo "$as_me:$LINENO: checking for Sybase in $SYBASE_PATH" >&5
--echo $ECHO_N "checking for Sybase in $SYBASE_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Sybase${SYBASE_PATH:+ in $SYBASE_PATH}" >&5
-+echo $ECHO_N "checking for Sybase${SYBASE_PATH:+ in $SYBASE_PATH}... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_sybase+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23187,24 +26704,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -23215,11 +26744,12 @@
-
- ncbi_cv_lib_sybase=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sybase" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybase" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sybase" >&6; }
-
- if test "$ncbi_cv_lib_sybase" = yes; then
- WithPackages="$WithPackages${WithPackagesSep}Sybase"; WithPackagesSep=" "
-@@ -23236,8 +26766,8 @@
-
- fi
- if test "$with_dbapi" != no -a -f ${real_srcdir}/src/objtools/data_loaders/genbank/pubseq/Makefile.ncbi_xreader_pubseqos.lib ; then
-- echo "$as_me:$LINENO: checking for PubSeq service availability" >&5
--echo $ECHO_N "checking for PubSeq service availability... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for PubSeq service availability" >&5
-+echo $ECHO_N "checking for PubSeq service availability... $ECHO_C" >&6; }
- if test "${ncbi_cv_db_pubseq+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23247,8 +26777,8 @@
- ncbi_cv_db_pubseq=no
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_db_pubseq" >&5
--echo "${ECHO_T}$ncbi_cv_db_pubseq" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_db_pubseq" >&5
-+echo "${ECHO_T}$ncbi_cv_db_pubseq" >&6; }
- if test "$ncbi_cv_db_pubseq" = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -23263,8 +26793,8 @@
- fi
-
- SYBASE_DBLIBS="$SYBASE_LPATH -lsybdb${bit64_sfx}"
-- echo "$as_me:$LINENO: checking for Sybase DBLib" >&5
--echo $ECHO_N "checking for Sybase DBLib... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Sybase DBLib" >&5
-+echo $ECHO_N "checking for Sybase DBLib... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_sybdb+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23292,24 +26822,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -23320,11 +26862,12 @@
-
- ncbi_cv_lib_sybdb=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybdb" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sybdb" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sybdb" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sybdb" >&6; }
- if test "$ncbi_cv_lib_sybdb" = yes; then
- WithPackages="$WithPackages${WithPackagesSep}DBLib"; WithPackagesSep=" "
-
-@@ -23431,8 +26974,8 @@
- echo "$as_me: Using bundled FreeTDS (version $ftds_ver) from $FTDS_PATH" >&6;}
- else
- FTDS_LIBS="$FTDS_CTLIBS"
-- echo "$as_me:$LINENO: checking for FreeTDS in $FTDS_PATH" >&5
--echo $ECHO_N "checking for FreeTDS in $FTDS_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for FreeTDS${FTDS_PATH:+ in $FTDS_PATH}" >&5
-+echo $ECHO_N "checking for FreeTDS${FTDS_PATH:+ in $FTDS_PATH}... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_freetds+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23463,24 +27006,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -23491,11 +27046,12 @@
-
- ncbi_cv_lib_freetds=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetds" >&5
--echo "${ECHO_T}$ncbi_cv_lib_freetds" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetds" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_freetds" >&6; }
- if test "$ncbi_cv_lib_freetds" = "no"; then
- # Don't panic when using partial trees lacking dbapi/driver/ftdsN.
- if test "${with_ftds:=no}" != no; then
-@@ -23548,8 +27104,8 @@
- : ${MYSQL_BINPATH=$MYSQL_PATH/bin}
- # Extract the first word of "mysql_config", so it can be a program name with args.
- set dummy mysql_config; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_mysql_config+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23565,40 +27121,41 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_mysql_config="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- mysql_config=$ac_cv_path_mysql_config
--
- if test -n "$mysql_config"; then
-- echo "$as_me:$LINENO: result: $mysql_config" >&5
--echo "${ECHO_T}$mysql_config" >&6
-+ { echo "$as_me:$LINENO: result: $mysql_config" >&5
-+echo "${ECHO_T}$mysql_config" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -n "$mysql_config" ; then
- : ${MYSQL_BINPATH=`dirname $mysql_config`}
- # Kill off single quotes, due to later requoting
- : ${MYSQL_INCLUDE=`$mysql_config --include | tr -d \'`}
- if test -z "${MYSQL_LIBS+set}"; then
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- MYSQL_LIBS=`$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; "`
-+ MYSQL_LIBS=`$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; $no_usr_lib"`
- else
- MYSQL_LIBS=
- ncbi_rp_L_sep=
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; "`; do
-+ for x in `$mysql_config --libs${mt_sfx:+_r} | sed -e "s/'//g; $no_usr_lib"`; do
- case "$x" in
- -L*)
- MYSQL_LIBS="$MYSQL_LIBS${ncbi_rp_L_sep}$x"
-@@ -23617,8 +27174,8 @@
- MYSQL_LIBS="$MYSQL_LIBS${ncbi_rp_R_flags}"
- fi
- fi
-- echo "$as_me:$LINENO: checking whether MySQL works" >&5
--echo $ECHO_N "checking whether MySQL works... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether MySQL works" >&5
-+echo $ECHO_N "checking whether MySQL works... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_mysql+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23640,24 +27197,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -23668,11 +27237,12 @@
-
- ncbi_cv_lib_mysql=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_mysql" >&5
--echo "${ECHO_T}$ncbi_cv_lib_mysql" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_mysql" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_mysql" >&6; }
- if test "$ncbi_cv_lib_mysql" = no; then
- if test "${with_mysql:=no}" != no; then
- { { echo "$as_me:$LINENO: error: --with-mysql explicitly specified, but no usable version found." >&5
-@@ -23706,7 +27276,6 @@
- if test "$with_bdb" != "no" ; then
- case "$with_bdb" in
- yes | "" )
-- : ${BERKELEYDB_PATH:="$NCBI/BerkeleyDB"}
- ;;
- */*)
- BERKELEYDB_PATH=$with_bdb
-@@ -23794,8 +27363,8 @@
- else
- BERKELEYDB_STATIC_LIBS=${BERKELEYDB_LIBS}
- fi
-- echo "$as_me:$LINENO: checking for Berkeley DB libraries in $BERKELEYDB_PATH" >&5
--echo $ECHO_N "checking for Berkeley DB libraries in $BERKELEYDB_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Berkeley DB libraries${BERKELEYDB_PATH:+ in $BERKELEYDB_PATH}" >&5
-+echo $ECHO_N "checking for Berkeley DB libraries${BERKELEYDB_PATH:+ in $BERKELEYDB_PATH}... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_berkeley_db+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23817,24 +27386,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -23845,11 +27426,12 @@
-
- ncbi_cv_lib_berkeley_db=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db" >&5
--echo "${ECHO_T}$ncbi_cv_lib_berkeley_db" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_berkeley_db" >&6; }
- if test "$ncbi_cv_lib_berkeley_db" = "no"; then
- if test "${with_bdb:=no}" != no; then
- { { echo "$as_me:$LINENO: error: --with-bdb explicitly specified, but no usable version found." >&5
-@@ -23857,8 +27439,8 @@
- { (exit 1); exit 1; }; }
- fi
- else
-- echo "$as_me:$LINENO: checking Berkeley DB version (4.3 or newer required)" >&5
--echo $ECHO_N "checking Berkeley DB version (4.3 or newer required)... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking Berkeley DB version (4.3 or newer required)" >&5
-+echo $ECHO_N "checking Berkeley DB version (4.3 or newer required)... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_berkeley_db_version+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23880,8 +27462,8 @@
- rm -f contest*
-
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_version" >&5
--echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_version" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_version" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_version" >&6; }
- case "$ncbi_cv_lib_berkeley_db_version" in
- 1.* | 2.* | 3.* | 4.[0-2].* )
- { echo "$as_me:$LINENO: WARNING: Your Berkeley DB version is too old to use. (Needed >= 4.3.)" >&5
-@@ -23948,8 +27530,8 @@
- else
- BERKELEYDB_CXX_STATIC_LIBS=${BERKELEYDB_CXX_LIBS}
- fi
-- echo "$as_me:$LINENO: checking for native Berkeley DB C++ wrappers (optional)" >&5
--echo $ECHO_N "checking for native Berkeley DB C++ wrappers (optional)... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for native Berkeley DB C++ wrappers (optional)" >&5
-+echo $ECHO_N "checking for native Berkeley DB C++ wrappers (optional)... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_berkeley_db_cxx+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -23971,24 +27553,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -23999,11 +27593,12 @@
-
- ncbi_cv_lib_berkeley_db_cxx=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_cxx" >&5
--echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_cxx" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_berkeley_db_cxx" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_berkeley_db_cxx" >&6; }
- if test "$ncbi_cv_lib_berkeley_db_cxx" = "yes"; then
- WithPackages="$WithPackages${WithPackagesSep}BerkeleyDB++"; WithPackagesSep=" "
-
-@@ -24052,8 +27647,8 @@
- fi
- CPPFLAGS="$ODBC_INCLUDE $orig_CPPFLAGS"
- LIBS="$ODBC_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for ODBC libraries in $ODBC_PATH" >&5
--echo $ECHO_N "checking for ODBC libraries in $ODBC_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for ODBC libraries${ODBC_PATH:+ in $ODBC_PATH}" >&5
-+echo $ECHO_N "checking for ODBC libraries${ODBC_PATH:+ in $ODBC_PATH}... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_odbc+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24074,24 +27669,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24102,11 +27709,12 @@
-
- ncbi_cv_lib_odbc=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_odbc" >&5
--echo "${ECHO_T}$ncbi_cv_lib_odbc" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_odbc" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_odbc" >&6; }
- if test "$ncbi_cv_lib_odbc" = "no"; then
- if test "${with_odbc:=no}" != no; then
- { { echo "$as_me:$LINENO: error: --with-odbc explicitly specified, but no usable version found." >&5
-@@ -24119,9 +27727,9 @@
- for ac_header in odbcss.h
- do
- as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_header" >&5
--echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
--if eval "test \"\${$as_ac_Header+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_header" >&5
-+echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6; }
-+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -24135,24 +27743,36 @@
- #include <$ac_header>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24163,10 +27783,12 @@
-
- eval "$as_ac_Header=no"
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_Header'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_Header'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
-@@ -24181,9 +27803,9 @@
- for ac_func in SQLGetPrivateProfileString
- do
- as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -24209,53 +27831,59 @@
-
- #undef $ac_func
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char $ac_func ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
-+#if defined __stub_$ac_func || defined __stub___$ac_func
- choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != $ac_func;
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24266,11 +27894,13 @@
-
- eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
- if test `eval echo '${'$as_ac_var'}'` = yes; then
- cat >>confdefs.h <<_ACEOF
- #define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-@@ -24279,8 +27909,8 @@
- fi
- done
-
-- echo "$as_me:$LINENO: checking for SQLLEN" >&5
--echo $ECHO_N "checking for SQLLEN... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for SQLLEN" >&5
-+echo $ECHO_N "checking for SQLLEN... $ECHO_C" >&6; }
- if test "${ac_cv_type_SQLLEN+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24292,36 +27922,49 @@
- /* end confdefs.h. */
- #include <sqltypes.h>
-
-+typedef SQLLEN ac__type_new_;
- int
- main ()
- {
--if ((SQLLEN *) 0)
-+if ((ac__type_new_ *) 0)
- return 0;
--if (sizeof (SQLLEN))
-+if (sizeof (ac__type_new_))
- return 0;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24332,10 +27975,11 @@
-
- ac_cv_type_SQLLEN=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_type_SQLLEN" >&5
--echo "${ECHO_T}$ac_cv_type_SQLLEN" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_type_SQLLEN" >&5
-+echo "${ECHO_T}$ac_cv_type_SQLLEN" >&6; }
- if test $ac_cv_type_SQLLEN = yes; then
-
- cat >>confdefs.h <<_ACEOF
-@@ -24346,8 +27990,8 @@
- fi
-
-
-- echo "$as_me:$LINENO: checking whether SQLColAttribute's last argument is an SQLLEN *" >&5
--echo $ECHO_N "checking whether SQLColAttribute's last argument is an SQLLEN *... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether SQLColAttribute's last argument is an SQLLEN *" >&5
-+echo $ECHO_N "checking whether SQLColAttribute's last argument is an SQLLEN *... $ECHO_C" >&6; }
- if test "${ncbi_cv_func_sqlcolattribute_sqllen+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24370,24 +28014,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24398,10 +28054,11 @@
-
- ncbi_cv_func_sqlcolattribute_sqllen=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_sqlcolattribute_sqllen" >&5
--echo "${ECHO_T}$ncbi_cv_func_sqlcolattribute_sqllen" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_func_sqlcolattribute_sqllen" >&5
-+echo "${ECHO_T}$ncbi_cv_func_sqlcolattribute_sqllen" >&6; }
- if test $ncbi_cv_func_sqlcolattribute_sqllen = yes; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -24442,8 +28099,8 @@
- esac
- # Extract the first word of "python", so it can be a program name with args.
- set dummy python; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_PYTHON+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24459,27 +28116,28 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_PYTHON="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- PYTHON=$ac_cv_path_PYTHON
--
- if test -n "$PYTHON"; then
-- echo "$as_me:$LINENO: result: $PYTHON" >&5
--echo "${ECHO_T}$PYTHON" >&6
-+ { echo "$as_me:$LINENO: result: $PYTHON" >&5
-+echo "${ECHO_T}$PYTHON" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -x "$PYTHON"; then
- PYTHON_VERSION=`$PYTHON -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
- else
-@@ -24512,8 +28170,8 @@
- fi
- CPPFLAGS="$PYTHON_INCLUDE $orig_CPPFLAGS"
- LIBS="$PYTHON_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for usable Python $PYTHON_VERSION libraries" >&5
--echo $ECHO_N "checking for usable Python $PYTHON_VERSION libraries... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for usable Python $PYTHON_VERSION libraries" >&5
-+echo $ECHO_N "checking for usable Python $PYTHON_VERSION libraries... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_python+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24540,24 +28198,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24568,11 +28238,12 @@
-
- ncbi_cv_lib_python=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_python" >&5
--echo "${ECHO_T}$ncbi_cv_lib_python" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_python" >&6; }
- else
- ncbi_cv_lib_python=no
- fi
-@@ -24592,8 +28263,8 @@
-
- # Extract the first word of "python2.3", so it can be a program name with args.
- set dummy python2.3; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_PYTHON23+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24609,27 +28280,28 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_PYTHON23="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- PYTHON23=$ac_cv_path_PYTHON23
--
- if test -n "$PYTHON23"; then
-- echo "$as_me:$LINENO: result: $PYTHON23" >&5
--echo "${ECHO_T}$PYTHON23" >&6
-+ { echo "$as_me:$LINENO: result: $PYTHON23" >&5
-+echo "${ECHO_T}$PYTHON23" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -x "$PYTHON23"; then
- PYTHON23_VERSION=`$PYTHON23 -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
- else
-@@ -24662,8 +28334,8 @@
- fi
- CPPFLAGS="$PYTHON23_INCLUDE $orig_CPPFLAGS"
- LIBS="$PYTHON23_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for usable Python $PYTHON23_VERSION libraries" >&5
--echo $ECHO_N "checking for usable Python $PYTHON23_VERSION libraries... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for usable Python $PYTHON23_VERSION libraries" >&5
-+echo $ECHO_N "checking for usable Python $PYTHON23_VERSION libraries... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_python23+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24690,24 +28362,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24718,11 +28402,12 @@
-
- ncbi_cv_lib_python23=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_python23" >&5
--echo "${ECHO_T}$ncbi_cv_lib_python23" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python23" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_python23" >&6; }
- else
- ncbi_cv_lib_python23=no
- fi
-@@ -24743,8 +28428,8 @@
- : ${PYTHON_PATH:="/usr/local/python-2.4.4"}
- # Extract the first word of "python2.4", so it can be a program name with args.
- set dummy python2.4; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_PYTHON24+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24760,27 +28445,28 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_PYTHON24="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- PYTHON24=$ac_cv_path_PYTHON24
--
- if test -n "$PYTHON24"; then
-- echo "$as_me:$LINENO: result: $PYTHON24" >&5
--echo "${ECHO_T}$PYTHON24" >&6
-+ { echo "$as_me:$LINENO: result: $PYTHON24" >&5
-+echo "${ECHO_T}$PYTHON24" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -x "$PYTHON24"; then
- PYTHON24_VERSION=`$PYTHON24 -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
- else
-@@ -24813,8 +28499,8 @@
- fi
- CPPFLAGS="$PYTHON24_INCLUDE $orig_CPPFLAGS"
- LIBS="$PYTHON24_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for usable Python $PYTHON24_VERSION libraries" >&5
--echo $ECHO_N "checking for usable Python $PYTHON24_VERSION libraries... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for usable Python $PYTHON24_VERSION libraries" >&5
-+echo $ECHO_N "checking for usable Python $PYTHON24_VERSION libraries... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_python24+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24841,24 +28527,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -24869,11 +28567,12 @@
-
- ncbi_cv_lib_python24=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_python24" >&5
--echo "${ECHO_T}$ncbi_cv_lib_python24" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python24" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_python24" >&6; }
- else
- ncbi_cv_lib_python24=no
- fi
-@@ -24893,8 +28592,8 @@
-
- # Extract the first word of "python2.5", so it can be a program name with args.
- set dummy python2.5; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_PYTHON25+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24910,27 +28609,28 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_PYTHON25="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- PYTHON25=$ac_cv_path_PYTHON25
--
- if test -n "$PYTHON25"; then
-- echo "$as_me:$LINENO: result: $PYTHON25" >&5
--echo "${ECHO_T}$PYTHON25" >&6
-+ { echo "$as_me:$LINENO: result: $PYTHON25" >&5
-+echo "${ECHO_T}$PYTHON25" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -x "$PYTHON25"; then
- PYTHON25_VERSION=`$PYTHON25 -c 'from distutils import sysconfig; print sysconfig.get_config_var("VERSION")' 2>/dev/null`
- else
-@@ -24963,8 +28663,8 @@
- fi
- CPPFLAGS="$PYTHON25_INCLUDE $orig_CPPFLAGS"
- LIBS="$PYTHON25_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for usable Python $PYTHON25_VERSION libraries" >&5
--echo $ECHO_N "checking for usable Python $PYTHON25_VERSION libraries... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for usable Python $PYTHON25_VERSION libraries" >&5
-+echo $ECHO_N "checking for usable Python $PYTHON25_VERSION libraries... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_python25+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -24991,24 +28691,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -25019,11 +28731,12 @@
-
- ncbi_cv_lib_python25=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_python25" >&5
--echo "${ECHO_T}$ncbi_cv_lib_python25" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_python25" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_python25" >&6; }
- else
- ncbi_cv_lib_python25=no
- fi
-@@ -25078,8 +28791,8 @@
- esac
- # Extract the first word of "perl", so it can be a program name with args.
- set dummy perl; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path_PERL+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25095,30 +28808,31 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path_PERL="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- ;;
- esac
- fi
- PERL=$ac_cv_path_PERL
--
- if test -n "$PERL"; then
-- echo "$as_me:$LINENO: result: $PERL" >&5
--echo "${ECHO_T}$PERL" >&6
-+ { echo "$as_me:$LINENO: result: $PERL" >&5
-+echo "${ECHO_T}$PERL" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- if test -x "$PERL"; then
- PERL_ARCHLIB=`$PERL -MConfig -e 'print \$Config{archlibexp};'`
-- PERL_FLAGS=`$PERL -MConfig -e 'print \$Config{cppflags};'`
-+ PERL_FLAGS=`$PERL -MConfig -e 'print join " ", grep /^-[DI]/, split /\\s+/, \$Config{cppflags};'`
- PERL_INCLUDE="-I$PERL_ARCHLIB/CORE $PERL_FLAGS"
- PERL_DEPS=`$PERL -MConfig -e 'print \$Config{libs};'`
- ncbi_rp_L_flags=
-@@ -25143,8 +28857,8 @@
- fi
- CPPFLAGS="$PERL_INCLUDE $orig_CPPFLAGS"
- LIBS="$PERL_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for usable Perl libraries" >&5
--echo $ECHO_N "checking for usable Perl libraries... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for usable Perl libraries" >&5
-+echo $ECHO_N "checking for usable Perl libraries... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_perl+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25166,24 +28880,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -25194,11 +28920,12 @@
-
- ncbi_cv_lib_perl=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_perl" >&5
--echo "${ECHO_T}$ncbi_cv_lib_perl" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_perl" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_perl" >&6; }
- fi
- if test "$ncbi_cv_lib_perl" = yes; then
- WithPackages="$WithPackages${WithPackagesSep}PERL"; WithPackagesSep=" "
-@@ -25236,8 +28963,8 @@
- { (exit 1); exit 1; }; }
- # Extract the first word of "$JAVAC", so it can be a program name with args.
- set dummy $JAVAC; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
- if test "${ac_cv_path__ACJNI_JAVAC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25252,28 +28979,29 @@
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_path__ACJNI_JAVAC="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
- done
- done
-+IFS=$as_save_IFS
-
- test -z "$ac_cv_path__ACJNI_JAVAC" && ac_cv_path__ACJNI_JAVAC="no"
- ;;
- esac
- fi
- _ACJNI_JAVAC=$ac_cv_path__ACJNI_JAVAC
--
- if test -n "$_ACJNI_JAVAC"; then
-- echo "$as_me:$LINENO: result: $_ACJNI_JAVAC" >&5
--echo "${ECHO_T}$_ACJNI_JAVAC" >&6
-+ { echo "$as_me:$LINENO: result: $_ACJNI_JAVAC" >&5
-+echo "${ECHO_T}$_ACJNI_JAVAC" >&6; }
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
- test "x$_ACJNI_JAVAC" = xno && { { echo "$as_me:$LINENO: error: $JAVAC could not be found in path" >&5
- echo "$as_me: error: $JAVAC could not be found in path" >&2;}
- { (exit 1); exit 1; }; }
-@@ -25282,16 +29010,16 @@
- # find the include directory relative to the javac executable
- _cur=""$_ACJNI_JAVAC""
- while ls -ld "$_cur" 2>/dev/null | grep " -> " >/dev/null; do
-- echo "$as_me:$LINENO: checking symlink for $_cur" >&5
--echo $ECHO_N "checking symlink for $_cur... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking symlink for $_cur" >&5
-+echo $ECHO_N "checking symlink for $_cur... $ECHO_C" >&6; }
- _slink=`ls -ld "$_cur" | sed 's/.* -> //'`
- case "$_slink" in
- /*) _cur="$_slink";;
- # 'X' avoids triggering unwanted echo options.
- *) _cur=`echo "X$_cur" | sed -e 's/^X//' -e 's:[^/]*$::'`"$_slink";;
- esac
-- echo "$as_me:$LINENO: result: $_cur" >&5
--echo "${ECHO_T}$_cur" >&6
-+ { echo "$as_me:$LINENO: result: $_cur" >&5
-+echo "${ECHO_T}$_cur" >&6; }
- done
- _ACJNI_FOLLOWED="$_cur"
-
-@@ -25343,17 +29071,17 @@
- echo "$as_me: setting JDK_INCLUDE = $JDK_INCLUDE" >&6;}
- CPPFLAGS="$JDK_INCLUDE $orig_CPPFLAGS"
- if test "${ac_cv_header_jni_h+set}" = set; then
-- echo "$as_me:$LINENO: checking for jni.h" >&5
--echo $ECHO_N "checking for jni.h... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for jni.h" >&5
-+echo $ECHO_N "checking for jni.h... $ECHO_C" >&6; }
- if test "${ac_cv_header_jni_h+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
--echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
--echo "${ECHO_T}$ac_cv_header_jni_h" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
-+echo "${ECHO_T}$ac_cv_header_jni_h" >&6; }
- else
- # Is the header compilable?
--echo "$as_me:$LINENO: checking jni.h usability" >&5
--echo $ECHO_N "checking jni.h usability... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking jni.h usability" >&5
-+echo $ECHO_N "checking jni.h usability... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -25364,24 +29092,36 @@
- #include <jni.h>
- _ACEOF
- rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -25392,13 +29132,14 @@
-
- ac_header_compiler=no
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-
- # Is the header present?
--echo "$as_me:$LINENO: checking jni.h presence" >&5
--echo $ECHO_N "checking jni.h presence... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking jni.h presence" >&5
-+echo $ECHO_N "checking jni.h presence... $ECHO_C" >&6; }
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -25407,8 +29148,13 @@
- /* end confdefs.h. */
- #include <jni.h>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -25432,9 +29178,10 @@
-
- ac_header_preproc=no
- fi
-+
- rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-
- # So? What about this header?
- case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-@@ -25458,25 +29205,23 @@
- echo "$as_me: WARNING: jni.h: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: jni.h: in the future, the compiler will take precedence" >&5
- echo "$as_me: WARNING: jni.h: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
-+ ( cat <<\_ASBOX
- ## ---------------------------------------- ##
- ## Report this to cpp-core@ncbi.nlm.nih.gov ##
- ## ---------------------------------------- ##
- _ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
- ;;
- esac
--echo "$as_me:$LINENO: checking for jni.h" >&5
--echo $ECHO_N "checking for jni.h... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for jni.h" >&5
-+echo $ECHO_N "checking for jni.h... $ECHO_C" >&6; }
- if test "${ac_cv_header_jni_h+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_cv_header_jni_h=$ac_header_preproc
- fi
--echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
--echo "${ECHO_T}$ac_cv_header_jni_h" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_header_jni_h" >&5
-+echo "${ECHO_T}$ac_cv_header_jni_h" >&6; }
-
- fi
- if test $ac_cv_header_jni_h = yes; then
-@@ -25500,9 +29245,7 @@
-
- ## Boost
- if test "$with_boost" != "no"; then
-- if test "${with_boost-yes}" = yes; then
-- : ${BOOST_PATH=$NCBI/boost}
-- else
-+ if test "${with_boost-yes}" != yes; then
- BOOST_PATH=$with_boost
- fi
- if test -d "$BOOST_PATH"; then
-@@ -25560,8 +29303,8 @@
- $as_unset ncbi_cv_lib_boost_thread || test "${ncbi_cv_lib_boost_thread+set}" != set || { ncbi_cv_lib_boost_thread=; export ncbi_cv_lib_boost_thread; }
- fi
- fi
-- echo "$as_me:$LINENO: checking Boost version" >&5
--echo $ECHO_N "checking Boost version... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking Boost version" >&5
-+echo $ECHO_N "checking Boost version... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_boost_version+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25583,22 +29326,27 @@
- rm -f contest*
-
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_version" >&5
--echo "${ECHO_T}$ncbi_cv_lib_boost_version" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_version" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_boost_version" >&6; }
- if test -d `echo $BOOST_INCLUDE | sed -e 's/^-I//'`/boost-${ncbi_cv_lib_boost_version}/boost; then
- BOOST_INCLUDE=$BOOST_INCLUDE/boost-${ncbi_cv_lib_boost_version}
- fi
-- case "$ncbi_compiler" in
-- MIPSPRO)
-+ case "$compiler:$ncbi_compiler_ver" in
-+ MIPSpro*)
- BOOST_INCLUDE="$BOOST_INCLUDE $BOOST_INCLUDE/boost/compatibility/cpp_c_headers"
- ;;
-- WORKSHOP)
-+ WorkShop*)
- # Boost.Test's macros yield a *lot* of spurious "should not initialize
- # a non-const reference with a temporary" warnings, to the point of
- # overwhelming the compiler in some cases; turn them off altogether
- # when using Boost at all.
- BOOST_INCLUDE="$BOOST_INCLUDE -erroff=reftotemp"
- ;;
-+ GCC*:4[7-9]* | GCC*:5*)
-+ # Some portions of Boost also have a lot of "unused" typedefs
-+ # from concept checking.
-+ BOOST_INCLUDE="$BOOST_INCLUDE -Wno-unused-local-typedefs"
-+ ;;
- esac
- case "$ncbi_cv_lib_boost_version" in
- 0_* | 1_[0-9] | 1_[0-9]_* | 1_[0-2][0-9] | 1_[0-2][0-9]_* ) ;;
-@@ -25612,7 +29360,7 @@
- fi
- with_boost=no
- ;;
-- 1_3[5-9] | 1_3[5-9]_* | 1_4* | 1_5[0-2] | 1_5[0-2]_* ) ;;
-+ 1_3[5-9] | 1_3[5-9]_* | 1_4* | 1_5[0-3] | 1_5[0-3]_* ) ;;
- '' ) with_boost=no ;;
- * )
- { echo "$as_me:$LINENO: WARNING: Untested Boost version; may prove incompatible." >&5
-@@ -25621,8 +29369,8 @@
- echo "$as_me: WARNING: If so, please re-run this script with the flag --without-boost." >&2;}
- ;;
- esac
-- echo "$as_me:$LINENO: checking for Boost library name tag" >&5
--echo $ECHO_N "checking for Boost library name tag... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Boost library name tag" >&5
-+echo $ECHO_N "checking for Boost library name tag... $ECHO_C" >&6; }
- case "$with_boost_tag" in
- yes | "" )
- case "$host_os:$ncbi_compiler" in
-@@ -25676,18 +29424,18 @@
- fi
-
- BOOST_TAG=$base$bsfx
-- echo "$as_me:$LINENO: result: $BOOST_TAG (autodetected)" >&5
--echo "${ECHO_T}$BOOST_TAG (autodetected)" >&6
-+ { echo "$as_me:$LINENO: result: $BOOST_TAG (autodetected)" >&5
-+echo "${ECHO_T}$BOOST_TAG (autodetected)" >&6; }
- ;;
- no )
- BOOST_TAG=""
-- echo "$as_me:$LINENO: result: none (by explicit request)" >&5
--echo "${ECHO_T}none (by explicit request)" >&6
-+ { echo "$as_me:$LINENO: result: none (by explicit request)" >&5
-+echo "${ECHO_T}none (by explicit request)" >&6; }
- ;;
- *)
- BOOST_TAG=$with_boost_tag
-- echo "$as_me:$LINENO: result: $BOOST_TAG (by explicit request)" >&5
--echo "${ECHO_T}$BOOST_TAG (by explicit request)" >&6
-+ { echo "$as_me:$LINENO: result: $BOOST_TAG (by explicit request)" >&5
-+echo "${ECHO_T}$BOOST_TAG (by explicit request)" >&6; }
- ;;
- esac
-
-@@ -25701,8 +29449,10 @@
- BOOST_REGEX_STATIC_LIBS=$BOOST_REGEX_LIBS
- fi
-
-- echo "$as_me:$LINENO: checking for Boost.Regex in $BOOST_PATH" >&5
--echo $ECHO_N "checking for Boost.Regex in $BOOST_PATH... $ECHO_C" >&6
-+ in_path=${BOOST_PATH:+ in $BOOST_PATH}
-+
-+ { echo "$as_me:$LINENO: checking for Boost.Regex$in_path" >&5
-+echo $ECHO_N "checking for Boost.Regex$in_path... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_boost_regex+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25724,24 +29474,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -25752,14 +29514,15 @@
-
- ncbi_cv_lib_boost_regex=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_regex" >&5
--echo "${ECHO_T}$ncbi_cv_lib_boost_regex" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_regex" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_boost_regex" >&6; }
-
-- echo "$as_me:$LINENO: checking for Boost.Spirit in $BOOST_PATH" >&5
--echo $ECHO_N "checking for Boost.Spirit in $BOOST_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Boost.Spirit$in_path" >&5
-+echo $ECHO_N "checking for Boost.Spirit$in_path... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_boost_spirit+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25781,24 +29544,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -25809,11 +29584,12 @@
-
- ncbi_cv_lib_boost_spirit=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_spirit" >&5
--echo "${ECHO_T}$ncbi_cv_lib_boost_spirit" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_spirit" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_boost_spirit" >&6; }
-
- BOOST_SYSTEM_LIBS=-lboost_system${BOOST_TAG}
- if test -f "$BOOST_LIBPATH_/libboost_system${BOOST_TAG}-static.a"; then
-@@ -25822,8 +29598,8 @@
- BOOST_SYSTEM_STATIC_LIBS=$BOOST_SYSTEM_LIBS
- fi
-
-- echo "$as_me:$LINENO: checking for Boost.System in $BOOST_PATH" >&5
--echo $ECHO_N "checking for Boost.System in $BOOST_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Boost.System$in_path" >&5
-+echo $ECHO_N "checking for Boost.System$in_path... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_boost_system+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25845,24 +29621,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -25875,11 +29663,91 @@
- BOOST_SYSTEM_LIBS=
- BOOST_SYSTEM_STATIC_LIBS=
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_system" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_boost_system" >&6; }
-+
-+ boost_fs_lib=-lboost_filesystem${BOOST_TAG}
-+ if test -f "$BOOST_LIBPATH_/libboost_filesystem${BOOST_TAG}-static.a"; then
-+ boost_fs_static_lib=-lboost_filesystem${BOOST_TAG}-static
-+ else
-+ boost_fs_static_lib=$boost_fs_lib
-+ fi
-+ BOOST_FILESYSTEM_LIBS="$boost_fs_lib $BOOST_SYSTEM_LIBS"
-+ BOOST_FILESYSTEM_STATIC_LIBS="$boost_fs_static_lib $BOOST_SYSTEM_STATIC_LIBS"
-+
-+ { echo "$as_me:$LINENO: checking for Boost.Filesystem$in_path" >&5
-+echo $ECHO_N "checking for Boost.Filesystem$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_boost_filesystem+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ CPPFLAGS="$BOOST_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$BOOST_LIBPATH $BOOST_FILESYSTEM_LIBS $RT_LIBS $orig_LIBS"
-+ cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+#include <boost/filesystem.hpp>
-+int
-+main ()
-+{
-+return boost::filesystem::portable_name("foo");
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ncbi_cv_lib_boost_filesystem=yes
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ncbi_cv_lib_boost_filesystem=no
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_system" >&5
--echo "${ECHO_T}$ncbi_cv_lib_boost_system" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_filesystem" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_boost_filesystem" >&6; }
-
- BOOST_TEST_PEM_LIBS=-lboost_prg_exec_monitor${BOOST_TAG}
- if test -f "$BOOST_LIBPATH_/libboost_prg_exec_monitor${BOOST_TAG}-static.a"; then
-@@ -25906,8 +29774,8 @@
- BOOST_TEST_TEM_LIBS=$BOOST_TEST_TEM_STATIC_LIBS
- BOOST_TEST_UTF_LIBS=$BOOST_TEST_UTF_STATIC_LIBS
-
-- echo "$as_me:$LINENO: checking for Boost.Test in $BOOST_PATH" >&5
--echo $ECHO_N "checking for Boost.Test in $BOOST_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Boost.Test$in_path" >&5
-+echo $ECHO_N "checking for Boost.Test$in_path... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_boost_test+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -25940,24 +29808,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -25966,8 +29846,10 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- done
- case "$found" in
-@@ -25977,8 +29859,8 @@
- '' ) ncbi_cv_lib_boost_test=no ;;
- esac
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_test" >&5
--echo "${ECHO_T}$ncbi_cv_lib_boost_test" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_test" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_boost_test" >&6; }
-
- BOOST_THREAD_LIBS="-lboost_thread${BOOST_TAG} $BOOST_SYSTEM_LIBS"
- if test -f "$BOOST_LIBPATH_/libboost_thread${BOOST_TAG}-static.a"; then
-@@ -25987,8 +29869,8 @@
- BOOST_THREAD_STATIC_LIBS=$BOOST_THREAD_LIBS
- fi
-
-- echo "$as_me:$LINENO: checking for Boost.Threads in $BOOST_PATH" >&5
--echo $ECHO_N "checking for Boost.Threads in $BOOST_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for Boost.Threads$in_path" >&5
-+echo $ECHO_N "checking for Boost.Threads$in_path... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_boost_thread+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -26010,24 +29892,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26038,21 +29932,33 @@
-
- ncbi_cv_lib_boost_thread=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_thread" >&5
--echo "${ECHO_T}$ncbi_cv_lib_boost_thread" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_boost_thread" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_boost_thread" >&6; }
- else
- BOOST_INCLUDE=
- BOOST_LIBPATH=
- BOOST_TAG=
-+ ncbi_cv_lib_boost_filesystem=no
- ncbi_cv_lib_boost_regex=no
- ncbi_cv_lib_boost_spirit=no
-+ ncbi_cv_lib_boost_system=no
- ncbi_cv_lib_boost_test=no
- ncbi_cv_lib_boost_thread=no
- fi
-
-+if test "$ncbi_cv_lib_boost_filesystem" != "no"; then
-+ WithPackages="$WithPackages${WithPackagesSep}Boost.Filesystem"; WithPackagesSep=" "
-+else
-+ boost_fs_lib=
-+ boost_fs_static_lib=
-+ BOOST_FILESYSTEM_LIBS=
-+ BOOST_FILESYSTEM_STATIC_LIBS=
-+fi
-+
- if test "$ncbi_cv_lib_boost_regex" != "no"; then
-
- cat >>confdefs.h <<\_ACEOF
-@@ -26122,7 +30028,10 @@
-
- ## NCBI C Toolkit
- if test "$with_ncbi_c" != "no" ; then
-- NCBI_C_PATH=${NCBI_C_PATH:="$NCBI"}
-+ if test "${with_ncbi_c-yes}" != yes; then
-+ NCBI_C_PATH=$with_ncbi_c
-+ fi
-+ : ${NCBI_C_PATH="$NCBI"}
- if test "$ncbi_compiler" = ICC -a -d "$NCBI_C_PATH/ncbi_icc"; then
- NCBI_C_PATH=$NCBI_C_PATH/ncbi_icc
- fi
-@@ -26144,8 +30053,8 @@
- NCBI_C_ncbi="-lncbi"
- fi
- NCBI_C_LIBPATH="-L$NCBI_C_LIBPATH"
-- echo "$as_me:$LINENO: checking for the NCBI C toolkit in $NCBI_C_PATH" >&5
--echo $ECHO_N "checking for the NCBI C toolkit in $NCBI_C_PATH... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for the NCBI C toolkit${NCBI_C_PATH:+ in $NCBI_C_PATH}" >&5
-+echo $ECHO_N "checking for the NCBI C toolkit${NCBI_C_PATH:+ in $NCBI_C_PATH}... $ECHO_C" >&6; }
- if test "${ncbi_cv_lib_ctools+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -26167,24 +30076,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26195,11 +30116,12 @@
-
- ncbi_cv_lib_ctools=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_ctools" >&5
--echo "${ECHO_T}$ncbi_cv_lib_ctools" >&6
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_ctools" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_ctools" >&6; }
- if test "$ncbi_cv_lib_ctools" = no; then
- if test "${with_ncbi_c:=no}" != no; then
- { { echo "$as_me:$LINENO: error: --with-ncbi-c explicitly specified, but no usable version found." >&5
-@@ -26240,44 +30162,49 @@
- cmp -s /usr/lib$bit64_sfx/$base $xlib || \
- x_libraries=/usr/X11R6/lib$bit64_sfx x_includes=/usr/X11R6/include
- fi
--echo "$as_me:$LINENO: checking for X" >&5
--echo $ECHO_N "checking for X... $ECHO_C" >&6
-+{ echo "$as_me:$LINENO: checking for X" >&5
-+echo $ECHO_N "checking for X... $ECHO_C" >&6; }
-
-
--# Check whether --with-x or --without-x was given.
-+# Check whether --with-x was given.
- if test "${with_x+set}" = set; then
-- withval="$with_x"
-+ withval=$with_x;
-+fi
-
--fi;
- # $have_x is `yes', `no', `disabled', or empty when we do not yet know.
- if test "x$with_x" = xno; then
- # The user explicitly disabled X.
- have_x=disabled
- else
-- if test "x$x_includes" != xNONE && test "x$x_libraries" != xNONE; then
-- # Both variables are already set.
-- have_x=yes
-- else
-- if test "${ac_cv_have_x+set}" = set; then
-+ case $x_includes,$x_libraries in #(
-+ *\'*) { { echo "$as_me:$LINENO: error: Cannot use X directory names containing '" >&5
-+echo "$as_me: error: Cannot use X directory names containing '" >&2;}
-+ { (exit 1); exit 1; }; };; #(
-+ *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- # One or both of the vars are not set, and there is no cached value.
- ac_x_includes=no ac_x_libraries=no
--rm -fr conftest.dir
-+rm -f -r conftest.dir
- if mkdir conftest.dir; then
- cd conftest.dir
-- # Make sure to not put "make" in the Imakefile rules, since we grep it out.
- cat >Imakefile <<'_ACEOF'
--acfindx:
-- @echo 'ac_im_incroot="${INCROOT}"; ac_im_usrlibdir="${USRLIBDIR}"; ac_im_libdir="${LIBDIR}"'
-+incroot:
-+ @echo incroot='${INCROOT}'
-+usrlibdir:
-+ @echo usrlibdir='${USRLIBDIR}'
-+libdir:
-+ @echo libdir='${LIBDIR}'
- _ACEOF
-- if (xmkmf) >/dev/null 2>/dev/null && test -f Makefile; then
-+ if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then
- # GNU make sometimes prints "make[1]: Entering...", which would confuse us.
-- eval `${MAKE-make} acfindx 2>/dev/null | grep -v make`
-+ for ac_var in incroot usrlibdir libdir; do
-+ eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`"
-+ done
- # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR.
- for ac_extension in a so sl; do
-- if test ! -f $ac_im_usrlibdir/libX11.$ac_extension &&
-- test -f $ac_im_libdir/libX11.$ac_extension; then
-+ if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" &&
-+ test -f "$ac_im_libdir/libX11.$ac_extension"; then
- ac_im_usrlibdir=$ac_im_libdir; break
- fi
- done
-@@ -26285,7 +30212,7 @@
- # bogus both because they are the default anyway, and because
- # using them would break gcc on systems where it needs fixed includes.
- case $ac_im_incroot in
-- /usr/include) ;;
-+ /usr/include) ac_x_includes= ;;
- *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;;
- esac
- case $ac_im_usrlibdir in
-@@ -26294,7 +30221,7 @@
- esac
- fi
- cd ..
-- rm -fr conftest.dir
-+ rm -f -r conftest.dir
- fi
-
- # Standard set of common directories for X headers.
-@@ -26335,7 +30262,7 @@
- /usr/openwin/share/include'
-
- if test "$ac_x_includes" = no; then
-- # Guess where to find include files, by looking for Intrinsic.h.
-+ # Guess where to find include files, by looking for Xlib.h.
- # First, try using that file with no special directory specified.
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -26343,10 +30270,15 @@
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <X11/Intrinsic.h>
-+#include <X11/Xlib.h>
- _ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
-@@ -26370,12 +30302,13 @@
- sed 's/^/| /' conftest.$ac_ext >&5
-
- for ac_dir in $ac_x_header_dirs; do
-- if test -r "$ac_dir/X11/Intrinsic.h"; then
-+ if test -r "$ac_dir/X11/Xlib.h"; then
- ac_x_includes=$ac_dir
- break
- fi
- done
- fi
-+
- rm -f conftest.err conftest.$ac_ext
- fi # $ac_x_includes = no
-
-@@ -26391,34 +30324,46 @@
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <X11/Intrinsic.h>
-+#include <X11/Xlib.h>
- int
- main ()
- {
--XtMalloc (0)
-+XrmInitialize ()
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26434,34 +30379,38 @@
- do
- # Don't even attempt the hair of trying to link an X program!
- for ac_extension in a so sl; do
-- if test -r $ac_dir/libXt.$ac_extension; then
-+ if test -r "$ac_dir/libXt.$ac_extension"; then
- ac_x_libraries=$ac_dir
- break 2
- fi
- done
- done
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi # $ac_x_libraries = no
-
--if test "$ac_x_includes" = no || test "$ac_x_libraries" = no; then
-- # Didn't find X anywhere. Cache the known absence of X.
-- ac_cv_have_x="have_x=no"
--else
-+case $ac_x_includes,$ac_x_libraries in #(
-+ no,* | *,no | *\'*)
-+ # Didn't find X, or a directory has "'" in its name.
-+ ac_cv_have_x="have_x=no";; #(
-+ *)
- # Record where we found X for the cache.
- ac_cv_have_x="have_x=yes \
-- ac_x_includes=$ac_x_includes ac_x_libraries=$ac_x_libraries"
--fi
--fi
--
-+ ac_x_includes='$ac_x_includes'\
-+ ac_x_libraries='$ac_x_libraries'"
-+esac
- fi
-+;; #(
-+ *) have_x=yes;;
-+ esac
- eval "$ac_cv_have_x"
- fi # $with_x != no
-
- if test "$have_x" != yes; then
-- echo "$as_me:$LINENO: result: $have_x" >&5
--echo "${ECHO_T}$have_x" >&6
-+ { echo "$as_me:$LINENO: result: $have_x" >&5
-+echo "${ECHO_T}$have_x" >&6; }
- no_x=yes
- else
- # If each of the values was on the command line, it overrides each guess.
-@@ -26469,9 +30418,10 @@
- test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries
- # Update the cache value to reflect the command line values.
- ac_cv_have_x="have_x=yes \
-- ac_x_includes=$x_includes ac_x_libraries=$x_libraries"
-- echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5
--echo "${ECHO_T}libraries $x_libraries, headers $x_includes" >&6
-+ ac_x_includes='$x_includes'\
-+ ac_x_libraries='$x_libraries'"
-+ { echo "$as_me:$LINENO: result: libraries $x_libraries, headers $x_includes" >&5
-+echo "${ECHO_T}libraries $x_libraries, headers $x_includes" >&6; }
- fi
-
- if test "$no_x" = yes; then
-@@ -26494,8 +30444,8 @@
- # others require no space. Words are not sufficient . . . .
- case `(uname -sr) 2>/dev/null` in
- "SunOS 5"*)
-- echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5
--echo $ECHO_N "checking whether -R must be followed by a space... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking whether -R must be followed by a space" >&5
-+echo $ECHO_N "checking whether -R must be followed by a space... $ECHO_C" >&6; }
- ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -26513,24 +30463,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26541,11 +30503,12 @@
-
- ac_R_nospace=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- if test $ac_R_nospace = yes; then
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- X_LIBS="$X_LIBS -R$x_libraries"
- else
- LIBS="$ac_xsave_LIBS -R $x_libraries"
-@@ -26565,24 +30528,36 @@
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26593,15 +30568,16 @@
-
- ac_R_space=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- if test $ac_R_space = yes; then
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
- X_LIBS="$X_LIBS -R $x_libraries"
- else
-- echo "$as_me:$LINENO: result: neither works" >&5
--echo "${ECHO_T}neither works" >&6
-+ { echo "$as_me:$LINENO: result: neither works" >&5
-+echo "${ECHO_T}neither works" >&6; }
- fi
- fi
- LIBS=$ac_xsave_LIBS
-@@ -26626,40 +30602,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char XOpenDisplay ();
- int
- main ()
- {
--XOpenDisplay ();
-+return XOpenDisplay ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26668,8 +30656,8 @@
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5
--echo $ECHO_N "checking for dnet_ntoa in -ldnet... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet" >&5
-+echo $ECHO_N "checking for dnet_ntoa in -ldnet... $ECHO_C" >&6; }
- if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -26682,40 +30670,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char dnet_ntoa ();
- int
- main ()
- {
--dnet_ntoa ();
-+return dnet_ntoa ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26726,19 +30726,20 @@
-
- ac_cv_lib_dnet_dnet_ntoa=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5
--echo "${ECHO_T}$ac_cv_lib_dnet_dnet_ntoa" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_dnet_ntoa" >&5
-+echo "${ECHO_T}$ac_cv_lib_dnet_dnet_ntoa" >&6; }
- if test $ac_cv_lib_dnet_dnet_ntoa = yes; then
- X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet"
- fi
-
- if test $ac_cv_lib_dnet_dnet_ntoa = no; then
-- echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5
--echo $ECHO_N "checking for dnet_ntoa in -ldnet_stub... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for dnet_ntoa in -ldnet_stub" >&5
-+echo $ECHO_N "checking for dnet_ntoa in -ldnet_stub... $ECHO_C" >&6; }
- if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -26751,40 +30752,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char dnet_ntoa ();
- int
- main ()
- {
--dnet_ntoa ();
-+return dnet_ntoa ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26795,19 +30808,21 @@
-
- ac_cv_lib_dnet_stub_dnet_ntoa=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5
--echo "${ECHO_T}$ac_cv_lib_dnet_stub_dnet_ntoa" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5
-+echo "${ECHO_T}$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; }
- if test $ac_cv_lib_dnet_stub_dnet_ntoa = yes; then
- X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub"
- fi
-
- fi
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS="$ac_xsave_LIBS"
-
-@@ -26819,8 +30834,8 @@
- # on Irix 5.2, according to T.E. Dickey.
- # The functions gethostbyname, getservbyname, and inet_addr are
- # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking.
-- echo "$as_me:$LINENO: checking for gethostbyname" >&5
--echo $ECHO_N "checking for gethostbyname... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for gethostbyname" >&5
-+echo $ECHO_N "checking for gethostbyname... $ECHO_C" >&6; }
- if test "${ac_cv_func_gethostbyname+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -26847,53 +30862,59 @@
-
- #undef gethostbyname
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char gethostbyname ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
-+#if defined __stub_gethostbyname || defined __stub___gethostbyname
- choke me
--#else
--char (*f) () = gethostbyname;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != gethostbyname;
-+return gethostbyname ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26904,15 +30925,16 @@
-
- ac_cv_func_gethostbyname=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5
--echo "${ECHO_T}$ac_cv_func_gethostbyname" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_func_gethostbyname" >&5
-+echo "${ECHO_T}$ac_cv_func_gethostbyname" >&6; }
-
- if test $ac_cv_func_gethostbyname = no; then
-- echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
--echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for gethostbyname in -lnsl" >&5
-+echo $ECHO_N "checking for gethostbyname in -lnsl... $ECHO_C" >&6; }
- if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -26925,40 +30947,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char gethostbyname ();
- int
- main ()
- {
--gethostbyname ();
-+return gethostbyname ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -26969,19 +31003,20 @@
-
- ac_cv_lib_nsl_gethostbyname=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
--echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_nsl_gethostbyname" >&5
-+echo "${ECHO_T}$ac_cv_lib_nsl_gethostbyname" >&6; }
- if test $ac_cv_lib_nsl_gethostbyname = yes; then
- X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl"
- fi
-
- if test $ac_cv_lib_nsl_gethostbyname = no; then
-- echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5
--echo $ECHO_N "checking for gethostbyname in -lbsd... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for gethostbyname in -lbsd" >&5
-+echo $ECHO_N "checking for gethostbyname in -lbsd... $ECHO_C" >&6; }
- if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -26994,40 +31029,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char gethostbyname ();
- int
- main ()
- {
--gethostbyname ();
-+return gethostbyname ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -27038,12 +31085,13 @@
-
- ac_cv_lib_bsd_gethostbyname=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5
--echo "${ECHO_T}$ac_cv_lib_bsd_gethostbyname" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_bsd_gethostbyname" >&5
-+echo "${ECHO_T}$ac_cv_lib_bsd_gethostbyname" >&6; }
- if test $ac_cv_lib_bsd_gethostbyname = yes; then
- X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd"
- fi
-@@ -27058,8 +31106,8 @@
- # variants that don't use the name server (or something). -lsocket
- # must be given before -lnsl if both are needed. We assume that
- # if connect needs -lnsl, so does gethostbyname.
-- echo "$as_me:$LINENO: checking for connect" >&5
--echo $ECHO_N "checking for connect... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for connect" >&5
-+echo $ECHO_N "checking for connect... $ECHO_C" >&6; }
- if test "${ac_cv_func_connect+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -27086,53 +31134,59 @@
-
- #undef connect
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char connect ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_connect) || defined (__stub___connect)
-+#if defined __stub_connect || defined __stub___connect
- choke me
--#else
--char (*f) () = connect;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != connect;
-+return connect ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -27143,15 +31197,16 @@
-
- ac_cv_func_connect=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5
--echo "${ECHO_T}$ac_cv_func_connect" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_func_connect" >&5
-+echo "${ECHO_T}$ac_cv_func_connect" >&6; }
-
- if test $ac_cv_func_connect = no; then
-- echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
--echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for connect in -lsocket" >&5
-+echo $ECHO_N "checking for connect in -lsocket... $ECHO_C" >&6; }
- if test "${ac_cv_lib_socket_connect+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -27164,40 +31219,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char connect ();
- int
- main ()
- {
--connect ();
-+return connect ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -27208,12 +31275,13 @@
-
- ac_cv_lib_socket_connect=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
--echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_socket_connect" >&5
-+echo "${ECHO_T}$ac_cv_lib_socket_connect" >&6; }
- if test $ac_cv_lib_socket_connect = yes; then
- X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS"
- fi
-@@ -27221,8 +31289,8 @@
- fi
-
- # Guillermo Gomez says -lposix is necessary on A/UX.
-- echo "$as_me:$LINENO: checking for remove" >&5
--echo $ECHO_N "checking for remove... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for remove" >&5
-+echo $ECHO_N "checking for remove... $ECHO_C" >&6; }
- if test "${ac_cv_func_remove+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -27249,53 +31317,59 @@
-
- #undef remove
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char remove ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_remove) || defined (__stub___remove)
-+#if defined __stub_remove || defined __stub___remove
- choke me
--#else
--char (*f) () = remove;
--#endif
--#ifdef __cplusplus
--}
- #endif
-
- int
- main ()
- {
--return f != remove;
-+return remove ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -27306,15 +31380,16 @@
-
- ac_cv_func_remove=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5
--echo "${ECHO_T}$ac_cv_func_remove" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_func_remove" >&5
-+echo "${ECHO_T}$ac_cv_func_remove" >&6; }
-
- if test $ac_cv_func_remove = no; then
-- echo "$as_me:$LINENO: checking for remove in -lposix" >&5
--echo $ECHO_N "checking for remove in -lposix... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for remove in -lposix" >&5
-+echo $ECHO_N "checking for remove in -lposix... $ECHO_C" >&6; }
- if test "${ac_cv_lib_posix_remove+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -27327,40 +31402,52 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char remove ();
- int
- main ()
- {
--remove ();
-+return remove ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-@@ -27371,12 +31458,13 @@
-
- ac_cv_lib_posix_remove=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5
--echo "${ECHO_T}$ac_cv_lib_posix_remove" >&6
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_posix_remove" >&5
-+echo "${ECHO_T}$ac_cv_lib_posix_remove" >&6; }
- if test $ac_cv_lib_posix_remove = yes; then
- X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix"
- fi
-@@ -27384,8 +31472,8 @@
- fi
-
- # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay.
-- echo "$as_me:$LINENO: checking for shmat" >&5
--echo $ECHO_N "checking for shmat... $ECHO_C" >&6
-+ { echo "$as_me:$LINENO: checking for shmat" >&5
-+echo $ECHO_N "checking for shmat... $ECHO_C" >&6; }
- if test "${ac_cv_func_shmat+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-@@ -27412,77 +31500,347 @@
-
- #undef shmat
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
--{
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
- char shmat ();
- /* The GNU C library defines this for functions which it implements
- to always fail with ENOSYS. Some functions are actually named
- something starting with __ and the normal name is an alias. */
--#if defined (__stub_shmat) || defined (__stub___shmat)
-+#if defined __stub_shmat || defined __stub___shmat
- choke me
--#else
--char (*f) () = shmat;
- #endif
-+
-+int
-+main ()
-+{
-+return shmat ();
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ac_cv_func_shmat=yes
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ac_cv_func_shmat=no
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5
-+echo "${ECHO_T}$ac_cv_func_shmat" >&6; }
-+
-+ if test $ac_cv_func_shmat = no; then
-+ { echo "$as_me:$LINENO: checking for shmat in -lipc" >&5
-+echo $ECHO_N "checking for shmat in -lipc... $ECHO_C" >&6; }
-+if test "${ac_cv_lib_ipc_shmat+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_check_lib_save_LIBS=$LIBS
-+LIBS="-lipc $LIBS"
-+cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
-+extern "C"
-+#endif
-+char shmat ();
-+int
-+main ()
-+{
-+return shmat ();
-+ ;
-+ return 0;
- }
-+_ACEOF
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ac_cv_lib_ipc_shmat=yes
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ac_cv_lib_ipc_shmat=no
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+LIBS=$ac_check_lib_save_LIBS
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5
-+echo "${ECHO_T}$ac_cv_lib_ipc_shmat" >&6; }
-+if test $ac_cv_lib_ipc_shmat = yes; then
-+ X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc"
-+fi
-+
-+ fi
-+ fi
-+
-+ # Check for libraries that X11R6 Xt/Xaw programs need.
-+ ac_save_LDFLAGS=$LDFLAGS
-+ test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries"
-+ # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to
-+ # check for ICE first), but we must link in the order -lSM -lICE or
-+ # we get undefined symbols. So assume we have SM if we have ICE.
-+ # These have to be linked with before -lX11, unlike the other
-+ # libraries we check for below, so use a different variable.
-+ # John Interrante, Karl Berry
-+ { echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5
-+echo $ECHO_N "checking for IceConnectionNumber in -lICE... $ECHO_C" >&6; }
-+if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_check_lib_save_LIBS=$LIBS
-+LIBS="-lICE $X_EXTRA_LIBS $LIBS"
-+cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
-+#ifdef __cplusplus
-+extern "C"
- #endif
-+char IceConnectionNumber ();
-+int
-+main ()
-+{
-+return IceConnectionNumber ();
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ac_cv_lib_ICE_IceConnectionNumber=yes
-+else
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ac_cv_lib_ICE_IceConnectionNumber=no
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+LIBS=$ac_check_lib_save_LIBS
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5
-+echo "${ECHO_T}$ac_cv_lib_ICE_IceConnectionNumber" >&6; }
-+if test $ac_cv_lib_ICE_IceConnectionNumber = yes; then
-+ X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE"
-+fi
-+
-+ LDFLAGS=$ac_save_LDFLAGS
-
-+fi
-+
-+x_libraries=`echo "$x_libraries" | sed -e "s,^$usr_lib\$,,"`
-+X_LIBS=`echo "$X_LIBS " | sed -e "$no_usr_lib"`
-+{ echo "$as_me:$LINENO: checking for XextCreateExtension in -lXext" >&5
-+echo $ECHO_N "checking for XextCreateExtension in -lXext... $ECHO_C" >&6; }
-+if test "${ac_cv_lib_Xext_XextCreateExtension+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_check_lib_save_LIBS=$LIBS
-+LIBS="-lXext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
-+cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
-+#ifdef __cplusplus
-+extern "C"
-+#endif
-+char XextCreateExtension ();
- int
- main ()
- {
--return f != shmat;
-+return XextCreateExtension ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_func_shmat=yes
-+ ac_cv_lib_Xext_XextCreateExtension=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_func_shmat=no
-+ ac_cv_lib_Xext_XextCreateExtension=no
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+LIBS=$ac_check_lib_save_LIBS
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_Xext_XextCreateExtension" >&5
-+echo "${ECHO_T}$ac_cv_lib_Xext_XextCreateExtension" >&6; }
-+if test $ac_cv_lib_Xext_XextCreateExtension = yes; then
-+ Xext="-lXext"
-+else
-+ Xext=
- fi
--echo "$as_me:$LINENO: result: $ac_cv_func_shmat" >&5
--echo "${ECHO_T}$ac_cv_func_shmat" >&6
-
-- if test $ac_cv_func_shmat = no; then
-- echo "$as_me:$LINENO: checking for shmat in -lipc" >&5
--echo $ECHO_N "checking for shmat in -lipc... $ECHO_C" >&6
--if test "${ac_cv_lib_ipc_shmat+set}" = set; then
-+{ echo "$as_me:$LINENO: checking for XtMainLoop in -lXt" >&5
-+echo $ECHO_N "checking for XtMainLoop in -lXt... $ECHO_C" >&6; }
-+if test "${ac_cv_lib_Xt_XtMainLoop+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lipc $LIBS"
-+LIBS="-lXt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -27490,79 +31848,82 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char shmat ();
-+char XtMainLoop ();
- int
- main ()
- {
--shmat ();
-+return XtMainLoop ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_lib_ipc_shmat=yes
-+ ac_cv_lib_Xt_XtMainLoop=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_lib_ipc_shmat=no
-+ ac_cv_lib_Xt_XtMainLoop=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_ipc_shmat" >&5
--echo "${ECHO_T}$ac_cv_lib_ipc_shmat" >&6
--if test $ac_cv_lib_ipc_shmat = yes; then
-- X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc"
--fi
--
-- fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_Xt_XtMainLoop" >&5
-+echo "${ECHO_T}$ac_cv_lib_Xt_XtMainLoop" >&6; }
-+if test $ac_cv_lib_Xt_XtMainLoop = yes; then
-+ Xt="-lXt"
-+else
-+ Xt=
- fi
-
-- # Check for libraries that X11R6 Xt/Xaw programs need.
-- ac_save_LDFLAGS=$LDFLAGS
-- test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries"
-- # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to
-- # check for ICE first), but we must link in the order -lSM -lICE or
-- # we get undefined symbols. So assume we have SM if we have ICE.
-- # These have to be linked with before -lX11, unlike the other
-- # libraries we check for below, so use a different variable.
-- # John Interrante, Karl Berry
-- echo "$as_me:$LINENO: checking for IceConnectionNumber in -lICE" >&5
--echo $ECHO_N "checking for IceConnectionNumber in -lICE... $ECHO_C" >&6
--if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then
-+{ echo "$as_me:$LINENO: checking for XmuMakeAtom in -lXmu" >&5
-+echo $ECHO_N "checking for XmuMakeAtom in -lXmu... $ECHO_C" >&6; }
-+if test "${ac_cv_lib_Xmu_XmuMakeAtom+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lICE $X_EXTRA_LIBS $LIBS"
-+LIBS="-lXmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -27570,73 +31931,172 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char IceConnectionNumber ();
-+char XmuMakeAtom ();
- int
- main ()
- {
--IceConnectionNumber ();
-+return XmuMakeAtom ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_lib_ICE_IceConnectionNumber=yes
-+ ac_cv_lib_Xmu_XmuMakeAtom=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_lib_ICE_IceConnectionNumber=no
-+ ac_cv_lib_Xmu_XmuMakeAtom=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5
--echo "${ECHO_T}$ac_cv_lib_ICE_IceConnectionNumber" >&6
--if test $ac_cv_lib_ICE_IceConnectionNumber = yes; then
-- X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE"
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_Xmu_XmuMakeAtom" >&5
-+echo "${ECHO_T}$ac_cv_lib_Xmu_XmuMakeAtom" >&6; }
-+if test $ac_cv_lib_Xmu_XmuMakeAtom = yes; then
-+ Xmu="-lXmu"
-+else
-+ Xmu=
- fi
-
-- LDFLAGS=$ac_save_LDFLAGS
-+LDFLAGS=$orig_LDFLAGS
-+X_ALL_LIBS="$Xmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS"
-
-+## OpenGL
-+if test "$with_opengl" != "no"; then
-+ if test "${with_opengl-yes}" != yes; then
-+ OPENGL_PATH=$with_opengl
- fi
--
--x_libraries=`echo "$x_libraries" | sed -e "s,^$usr_lib\$,,"`
--X_LIBS=`echo "$X_LIBS " | sed -e "$no_usr_lib"`
--echo "$as_me:$LINENO: checking for XextCreateExtension in -lXext" >&5
--echo $ECHO_N "checking for XextCreateExtension in -lXext... $ECHO_C" >&6
--if test "${ac_cv_lib_Xext_XextCreateExtension+set}" = set; then
-+ if test -d "$OPENGL_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $OPENGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $OPENGL_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ OPENGL_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$OPENGL_PATH" in
-+ /*) ;;
-+ * ) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ case "$OSTYPE" in
-+ darwin) # Use native interface
-+ OPENGL_LIBS="-framework AGL -framework OpenGL"
-+ ;;
-+ # cygwin) ... ;;
-+ *) # Default -- assume X-based
-+ LIBS="$orig_LIBS"
-+ CPPFLAGS="$orig_CPPFLAGS"
-+ LDFLAGS="$orig_LDFLAGS $X_LIBS"
-+ if test -d "$OPENGL_PATH/include/GL"; then
-+ OPENGL_INCLUDE="-I$OPENGL_PATH/include $X_CFLAGS"
-+ else
-+ OPENGL_INCLUDE=$X_CFLAGS
-+ fi
-+ if test -n "$OPENGL_PATH" -a -d "$OPENGL_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $OPENGL_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $OPENGL_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
-+ fi
-+ elif test -f /usr/lib/mesa/libGL.so; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in /usr/lib/mesa; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in /usr/lib/mesa; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
-+ fi
-+ else
-+ OPENGL_LIBPATH=$X_LIBS
-+ fi
-+ OPENGL_LIBS="$OPENGL_LIBPATH -lGLU -lGL $X_ALL_LIBS"
-+ ;;
-+ esac
-+ case "${OPENGL_PATH}" in
-+ */*) where=" in $OPENGL_PATH" ;;
-+ * ) where= ;;
-+ esac
-+ { echo "$as_me:$LINENO: checking for OpenGL$where" >&5
-+echo $ECHO_N "checking for OpenGL$where... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_opengl+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lXext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
-+ CPPFLAGS="$orig_CPPFLAGS $OPENGL_INCLUDE"
-+ LIBS="$OPENGL_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -27644,69 +32104,136 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
-+ #ifdef NCBI_OS_DARWIN
-+ # include <OpenGL/gl.h>
-+ #else
-+ # include <GL/gl.h>
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char XextCreateExtension ();
-+
- int
- main ()
- {
--XextCreateExtension ();
-+glBegin(0);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_lib_Xext_XextCreateExtension=yes
-+ ncbi_cv_lib_opengl=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_lib_Xext_XextCreateExtension=no
-+ ncbi_cv_lib_opengl=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
--LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_Xext_XextCreateExtension" >&5
--echo "${ECHO_T}$ac_cv_lib_Xext_XextCreateExtension" >&6
--if test $ac_cv_lib_Xext_XextCreateExtension = yes; then
-- Xext="-lXext"
--else
-- Xext=
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_opengl" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_opengl" >&6; }
- fi
-
--echo "$as_me:$LINENO: checking for XtMainLoop in -lXt" >&5
--echo $ECHO_N "checking for XtMainLoop in -lXt... $ECHO_C" >&6
--if test "${ac_cv_lib_Xt_XtMainLoop+set}" = set; then
-+if test "$with_opengl" = "no" -o "$ncbi_cv_lib_opengl" = "no"; then
-+ OPENGL_INCLUDE=
-+ OPENGL_LIBS=
-+ OPENGL_STATIC_LIBS=
-+ OSMESA_INCLUDE=
-+ OSMESA_LIBS=
-+ OSMESA_STATIC_LIBS=
-+ GLUT_INCLUDE=
-+ GLUT_LIBS=
-+ GLEW_INCLUDE=
-+ GLEW_LIBS=
-+ GLEW_STATIC_LIBS=
-+ if test "${with_opengl:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-opengl explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-opengl explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+else
-+ WithPackages="$WithPackages${WithPackagesSep}OpenGL"; WithPackagesSep=" "
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_OPENGL 1
-+_ACEOF
-+
-+ if test -f "$OPENGL_PATH/lib${bit64_sfx}/libGLU-static.a"; then
-+ OPENGL_STATIC_LIBS="$OPENGL_LIBPATH -lGLU-static -lGL-static $X_ALL_LIBS"
-+ else
-+ OPENGL_STATIC_LIBS=$OPENGL_LIBS
-+ fi
-+ : ${OSMESA_PATH=$OPENGL_PATH}
-+ if test "$with_mesa" != "no"; then
-+ if test "${with_mesa-yes}" != "yes"; then
-+ OSMESA_PATH=$with_mesa
-+ fi
-+ if test -d "$OSMESA_PATH"; then
-+ OSMESA_INCLUDE=-I$OSMESA_PATH/include
-+ if test "$OSMESA_PATH" != "$OPENGL_PATH"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $OSMESA_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ OSMESA_LDFLAGS="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $OSMESA_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ OSMESA_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ fi
-+ LDFLAGS="$orig_LDFLAGS $OSMESA_LDFLAGS $OPENGL_LIBPATH"
-+ { echo "$as_me:$LINENO: checking for OSMesaCreateContext in -lOSMesa" >&5
-+echo $ECHO_N "checking for OSMesaCreateContext in -lOSMesa... $ECHO_C" >&6; }
-+if test "${ac_cv_lib_OSMesa_OSMesaCreateContext+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lXt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
-+LIBS="-lOSMesa $OPENGL_LIBS $LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -27714,69 +32241,128 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char XtMainLoop ();
-+char OSMesaCreateContext ();
- int
- main ()
- {
--XtMainLoop ();
-+return OSMesaCreateContext ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_lib_Xt_XtMainLoop=yes
-+ ac_cv_lib_OSMesa_OSMesaCreateContext=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_lib_Xt_XtMainLoop=no
-+ ac_cv_lib_OSMesa_OSMesaCreateContext=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_Xt_XtMainLoop" >&5
--echo "${ECHO_T}$ac_cv_lib_Xt_XtMainLoop" >&6
--if test $ac_cv_lib_Xt_XtMainLoop = yes; then
-- Xt="-lXt"
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_OSMesa_OSMesaCreateContext" >&5
-+echo "${ECHO_T}$ac_cv_lib_OSMesa_OSMesaCreateContext" >&6; }
-+if test $ac_cv_lib_OSMesa_OSMesaCreateContext = yes; then
-+ WithPackages="$WithPackages${WithPackagesSep}MESA"; WithPackagesSep=" ";
-+ OSMESA_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa -lGLU -lGL $X_ALL_LIBS"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBOSMESA 1
-+_ACEOF
-+
- else
-- Xt=
-+ OSMESA_LIBS=
- fi
-
--echo "$as_me:$LINENO: checking for XmuMakeAtom in -lXmu" >&5
--echo $ECHO_N "checking for XmuMakeAtom in -lXmu... $ECHO_C" >&6
--if test "${ac_cv_lib_Xmu_XmuMakeAtom+set}" = set; then
-+ fi
-+ if test -z "$OSMESA_LIBS"; then
-+ if test "${with_mesa:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-mesa explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-mesa explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ elif test -f "$OSMESA_PATH/lib${bit64_sfx}/libOSMesa-static.a"; then
-+ OSMESA_STATIC_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa-static -lGLU-static -lGL-static $X_ALL_LIBS"
-+ else
-+ OSMESA_STATIC_LIBS=$OSMESA_LIBS
-+ fi
-+ if test "$with_glut" != "no"; then
-+ if test "${with_glut-yes}" != "yes"; then
-+ GLUT_PATH=$with_glut
-+ fi
-+ if test -d "GLUT_PATH"; then
-+ GLUT_INCLUDE=-I$GLUT_PATH/include
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $GLUT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ GLUT_LDFLAGS="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $GLUT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ GLUT_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ LDFLAGS="$orig_LDFLAGS $GLUT_LDFLAGS $OPENGL_LIBPATH"
-+ { echo "$as_me:$LINENO: checking for glutInit in -lglut" >&5
-+echo $ECHO_N "checking for glutInit in -lglut... $ECHO_C" >&6; }
-+if test "${ac_cv_lib_glut_glutInit+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lXmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS"
-+LIBS="-lglut $OPENGL_LIBS $LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -27784,163 +32370,163 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
--/* Override any gcc2 internal prototype to avoid an error. */
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
- #ifdef __cplusplus
- extern "C"
- #endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char XmuMakeAtom ();
-+char glutInit ();
- int
- main ()
- {
--XmuMakeAtom ();
-+return glutInit ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_lib_Xmu_XmuMakeAtom=yes
-+ ac_cv_lib_glut_glutInit=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_lib_Xmu_XmuMakeAtom=no
-+ ac_cv_lib_glut_glutInit=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_Xmu_XmuMakeAtom" >&5
--echo "${ECHO_T}$ac_cv_lib_Xmu_XmuMakeAtom" >&6
--if test $ac_cv_lib_Xmu_XmuMakeAtom = yes; then
-- Xmu="-lXmu"
-+{ echo "$as_me:$LINENO: result: $ac_cv_lib_glut_glutInit" >&5
-+echo "${ECHO_T}$ac_cv_lib_glut_glutInit" >&6; }
-+if test $ac_cv_lib_glut_glutInit = yes; then
-+ WithPackages="$WithPackages${WithPackagesSep}GLUT"; WithPackagesSep=" ";
-+ GLUT_LIBS="$GLUT_LDFLAGS $OPENGL_LIBPATH -lglut -lGLU -lGL $X_ALL_LIBS"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBGLUT 1
-+_ACEOF
-+
- else
-- Xmu=
-+ GLUT_LIBS=
- fi
-
--LDFLAGS=$orig_LDFLAGS
--X_ALL_LIBS="$Xmu $Xt $Xext $X_PRE_LIBS -lX11 $X_EXTRA_LIBS"
--
--## OpenGL
--if test "$with_opengl" != "no"; then
-- if test "${with_opengl-yes}" = yes; then
-- if test -d $NCBI/MesaGL; then
-- : ${OPENGL_PATH=$NCBI/MesaGL}
-+ if test -z "$GLUT_LIBS"; then
-+ if test "${with_glut:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-glut explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-glut explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
-- else
-- OPENGL_PATH=$with_opengl
- fi
-- if test -d "$OPENGL_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $OPENGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ fi
-+ if test "$with_glew" != "no"; then
-+ if test "${with_glew-yes}" != "yes"; then
-+ GLEW_PATH=$with_glew
-+ fi
-+ if test -d "$GLEW_PATH"; then
-+ if test -d "$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx"; then
-+ GLEW_PATH=$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx
-+ elif test -d "$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx"; then
-+ GLEW_PATH=$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx
-+ elif test -d "$GLEW_PATH/$DEBUG_SFX$bit64_sfx"; then
-+ GLEW_PATH=$GLEW_PATH/$DEBUG_SFX$bit64_sfx
-+ fi
-+ ncbi_fix_dir_tmp=`if cd $GLEW_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $OPENGL_PATH && $smart_pwd 2>/dev/null`
-+ /.*) ncbi_fix_dir_tmp2=`cd $GLEW_PATH && $smart_pwd 2>/dev/null`
- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- OPENGL_PATH=$ncbi_fix_dir_tmp2
-+ GLEW_PATH=$ncbi_fix_dir_tmp2
- else
-- case "$OPENGL_PATH" in
-+ case "$GLEW_PATH" in
- /*) ;;
-- * ) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
-+ * ) GLEW_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
- ;;
-- /*) OPENGL_PATH=$ncbi_fix_dir_tmp ;;
-+ /*) GLEW_PATH=$ncbi_fix_dir_tmp ;;
- esac
-- fi
-- case "$OSTYPE" in
-- darwin) # Use native interface
-- OPENGL_LIBS="-framework AGL -framework OpenGL"
-- ;;
-- # cygwin) ... ;;
-- *) # Default -- assume X-based
-- LIBS="$orig_LIBS"
-- CPPFLAGS="$orig_CPPFLAGS"
-- LDFLAGS="$orig_LDFLAGS $X_LIBS"
-- if test -d "$OPENGL_PATH/include/GL"; then
-- OPENGL_INCLUDE="-I$OPENGL_PATH/include $X_CFLAGS"
-+ GLEW_LIBDIR=$GLEW_PATH/lib
-+ if test -n "$bit64_sfx" -a -d $GLEW_LIBDIR$bit64_sfx; then
-+ if test -d $GLEW_LIBDIR; then
-+ for x in $GLEW_LIBDIR/libGLEW*; do
-+ if cmp -s "$x" "$GLEW_LIBDIR$bit64_sfx/`basename \"$x\"`"; then
-+ :
- else
-- OPENGL_INCLUDE=$X_CFLAGS
-+ GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
-+ break
- fi
-- if test -n "$OPENGL_PATH" -a -d "$OPENGL_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $OPENGL_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $OPENGL_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
-+ GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
- fi
-- elif test -f /usr/lib/mesa/libGL.so; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in /usr/lib/mesa; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- OPENGL_LIBPATH="${ncbi_rp_L_flags} $X_LIBS"
-+ fi
-+ glew_config="eval PKG_CONFIG_PATH=\"$GLEW_LIBDIR/pkgconfig\" pkg-config"
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in /usr/lib/mesa; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- OPENGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags} $X_LIBS"
-+ glew_config=pkg-config
- fi
-+ if pkg-config --version >/dev/null 2>&1; then
-+ if $glew_config glewmx --exists >/dev/null 2>&1 \
-+ && test -n "`$glew_config glewmx --libs 2>/dev/null`"; then
-+ glew_config="$glew_config glewmx"
-+ elif $glew_config glew --exists >/dev/null 2>&1 \
-+ && test -n "`$glew_config glew --libs 2>/dev/null`"; then
-+ glew_config="$glew_config glew"
- else
-- OPENGL_LIBPATH=$X_LIBS
-+ glew_config=
- fi
-- OPENGL_LIBS="$OPENGL_LIBPATH -lGLU -lGL $X_ALL_LIBS"
-- ;;
-- esac
-- case "${OPENGL_PATH}" in
-- */*) where=" in $OPENGL_PATH" ;;
-- * ) where= ;;
-- esac
-- echo "$as_me:$LINENO: checking for OpenGL$where" >&5
--echo $ECHO_N "checking for OpenGL$where... $ECHO_C" >&6
--if test "${ncbi_cv_lib_opengl+set}" = set; then
-+ if test -n "$glew_config"; then
-+ GLEW_INCLUDE=`$glew_config --cflags | sed 's:/GL *$::'`
-+ GLEW_LDFLAGS=`$glew_config --libs-only-L`
-+ glew_libname=`$glew_config --libs-only-l | sed -e 's/-l//'`
-+ fi
-+ fi
-+ if test -z "$glew_libname" -a -d "$GLEW_PATH"; then
-+ GLEW_INCLUDE=-I$GLEW_PATH/include
-+ GLEW_LDFLAGS=-L$GLEW_LIBDIR
-+ fi
-+ LDFLAGS="$orig_LDFLAGS $GLEW_LDFLAGS"
-+ LIBS="$OPENGL_LIBS $DL_LIBS $orig_LIBS"
-+ saved_LIBS=$LIBS
-+ { echo "$as_me:$LINENO: checking for library containing glewGetExtension" >&5
-+echo $ECHO_N "checking for library containing glewGetExtension... $ECHO_C" >&6; }
-+if test "${ac_cv_search_glewGetExtension+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$orig_CPPFLAGS $OPENGL_INCLUDE"
-- LIBS="$OPENGL_LIBS $orig_LIBS"
-+ ac_func_search_save_LIBS=$LIBS
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -27948,567 +32534,656 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
-
-- #ifdef NCBI_OS_DARWIN
-- # include <OpenGL/gl.h>
-- #else
-- # include <GL/gl.h>
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
-+#ifdef __cplusplus
-+extern "C"
- #endif
--
-+char glewGetExtension ();
- int
- main ()
- {
--glBegin(0);
-+return glewGetExtension ();
- ;
- return 0;
- }
- _ACEOF
-+for ac_lib in '' "$GLEW_LIBS" $glew_libname GLEWmx GLEW; do
-+ if test -z "$ac_lib"; then
-+ ac_res="none required"
-+ else
-+ ac_res=-l$ac_lib
-+ LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ fi
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_opengl=yes
-+ ac_cv_search_glewGetExtension=$ac_res
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_opengl=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_opengl" >&5
--echo "${ECHO_T}$ncbi_cv_lib_opengl" >&6
--fi
--
--if test "$with_opengl" = "no" -o "$ncbi_cv_lib_opengl" = "no"; then
-- OPENGL_INCLUDE=
-- OPENGL_LIBS=
-- OPENGL_STATIC_LIBS=
-- OSMESA_INCLUDE=
-- OSMESA_LIBS=
-- OSMESA_STATIC_LIBS=
-- GLUT_INCLUDE=
-- GLUT_LIBS=
-- GLEW_INCLUDE=
-- GLEW_LIBS=
-- GLEW_STATIC_LIBS=
-- if test "${with_opengl:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-opengl explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-opengl explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+
-+
-+fi
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext
-+ if test "${ac_cv_search_glewGetExtension+set}" = set; then
-+ break
- fi
-+done
-+if test "${ac_cv_search_glewGetExtension+set}" = set; then
-+ :
- else
-- WithPackages="$WithPackages${WithPackagesSep}OpenGL"; WithPackagesSep=" "
-+ ac_cv_search_glewGetExtension=no
-+fi
-+rm conftest.$ac_ext
-+LIBS=$ac_func_search_save_LIBS
-+fi
-+{ echo "$as_me:$LINENO: result: $ac_cv_search_glewGetExtension" >&5
-+echo "${ECHO_T}$ac_cv_search_glewGetExtension" >&6; }
-+ac_res=$ac_cv_search_glewGetExtension
-+if test "$ac_res" != no; then
-+ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_OPENGL 1
-+#define HAVE_LIBGLEW 1
- _ACEOF
-
-- if test -f "$OPENGL_PATH/lib${bit64_sfx}/libGLU-static.a"; then
-- OPENGL_STATIC_LIBS="$OPENGL_LIBPATH -lGLU-static -lGL-static $X_ALL_LIBS"
-- else
-- OPENGL_STATIC_LIBS=$OPENGL_LIBS
-+ test "x$ac_cv_search_glewGetExtension" = "xnone required" || GLEW_LIBS=$ac_cv_search_glewGetExtension
- fi
-- : ${OSMESA_PATH=$OPENGL_PATH}
-- if test "$with_mesa" != "no"; then
-- if test "${with_mesa-yes}" != "yes"; then
-- OSMESA_PATH=$with_mesa
-+
-+ LIBS=$saved_LIBS
-+
-+ if test "$ac_cv_search_glewGetExtension" = no; then
-+ GLEW_INCLUDE=
-+ GLEW_LIBS=
-+ if test "${with_glew:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-glew explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-glew explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
-- if test -d "$OSMESA_PATH"; then
-- OSMESA_INCLUDE=-I$OSMESA_PATH/include
-- if test "$OSMESA_PATH" != "$OPENGL_PATH"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "${with_glew_mx:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ else
-+ if test -z "${tmp_LIBS+set}"; then
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $OSMESA_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- OSMESA_LDFLAGS="${ncbi_rp_L_flags}"
-+ tmp_LIBS=`echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`
- else
-+ tmp_LIBS=
-+ ncbi_rp_L_sep=
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $OSMESA_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ for x in `echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`; do
-+ case "$x" in
-+ -L*)
-+ tmp_LIBS="$tmp_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
- done
-- OSMESA_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-+ tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}"
- fi
- fi
-- LDFLAGS="$orig_LDFLAGS $OSMESA_LDFLAGS $OPENGL_LIBPATH"
-- echo "$as_me:$LINENO: checking for OSMesaCreateContext in -lOSMesa" >&5
--echo $ECHO_N "checking for OSMesaCreateContext in -lOSMesa... $ECHO_C" >&6
--if test "${ac_cv_lib_OSMesa_OSMesaCreateContext+set}" = set; then
-+ GLEW_LIBS=$tmp_LIBS
-+ WithPackages="$WithPackages${WithPackagesSep}GLEW"; WithPackagesSep=" "
-+ CPPFLAGS="$orig_CPPFLAGS $GLEW_INCLUDE $OPENGL_INCLUDE"
-+ LIBS="$GLEW_LIBS $OPENGL_LIBS $DL_LIBS $orig_LIBS"
-+ { echo "$as_me:$LINENO: checking for GLEW multi-context (MX) support (recommended)" >&5
-+echo $ECHO_N "checking for GLEW multi-context (MX) support (recommended)... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_glew_mx+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lOSMesa $OPENGL_LIBS $LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char OSMesaCreateContext ();
-+#define GLEW_MX 1
-+ #include <GL/glew.h>
- int
- main ()
- {
--OSMesaCreateContext ();
-+glewContextInit(NULL);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_lib_OSMesa_OSMesaCreateContext=yes
-+ ncbi_cv_lib_glew_mx=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_lib_OSMesa_OSMesaCreateContext=no
-+ ncbi_cv_lib_glew_mx=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
--LIBS=$ac_check_lib_save_LIBS
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_OSMesa_OSMesaCreateContext" >&5
--echo "${ECHO_T}$ac_cv_lib_OSMesa_OSMesaCreateContext" >&6
--if test $ac_cv_lib_OSMesa_OSMesaCreateContext = yes; then
-- WithPackages="$WithPackages${WithPackagesSep}MESA"; WithPackagesSep=" ";
-- OSMESA_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa -lGLU -lGL $X_ALL_LIBS"
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_glew_mx" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_glew_mx" >&6; }
-+ if test $ncbi_cv_lib_glew_mx = yes; then
-+ GLEW_INCLUDE="$GLEW_INCLUDE -DGLEW_MX"
-+ else
-+ if test "${with_glew_mx:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ fi
-+ : ${GLEW_STATIC_LIBS=$GLEW_LIBDIR/libGLEW-static.a}
-+ test -f "$GLEW_STATIC_LIBS" || GLEW_STATIC_LIBS=$GLEW_LIBS
-+ fi
-+ fi
-+fi
-
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBOSMESA 1
--_ACEOF
-+LDFLAGS=$orig_LDFLAGS
-+
-+
-+## wxWidgets
-+# Insist on single-byte builds by default, per various projects' expectations.
-+: ${with_wxwidgets_ucs=no}
-+if test "$with_wxwidgets" != "no" ; then
-+ case "$with_wxwidgets" in
-+ yes | "" ) ;;
-+ * ) WXWIDGETS_PATH=$with_wxwidgets ;;
-+ esac
-+ if test -d "$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-+ -a -z "$WXWIDGETS_ARCH_PATH"; then
-+ WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-+ elif test -d "$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-+ -a -z "$WXWIDGETS_ARCH_PATH"; then
-+ WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-+ else
-+ WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH"
-+ fi
-+ WXWIDGETS_BINPATH=${WXWIDGETS_BINPATH:="$WXWIDGETS_ARCH_PATH/bin"}
-+ WXWIDGETS_LIBPATH=${WXWIDGETS_LIBPATH:="$WXWIDGETS_ARCH_PATH/lib"}
-+ WXWIDGETS_INCLUDE=
-+ $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
-+ # Extract the first word of "wx-config", so it can be a program name with args.
-+set dummy wx-config; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_wxconf+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ case $wxconf in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_wxconf="$wxconf" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+as_dummy="$WXWIDGETS_BINPATH:$PATH"
-+for as_dir in $as_dummy
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_wxconf="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
-+done
-+done
-+IFS=$as_save_IFS
-
-+ ;;
-+esac
-+fi
-+wxconf=$ac_cv_path_wxconf
-+if test -n "$wxconf"; then
-+ { echo "$as_me:$LINENO: result: $wxconf" >&5
-+echo "${ECHO_T}$wxconf" >&6; }
- else
-- OSMESA_LIBS=
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-
-+
-+ if test -x "$wxconf"; then
-+ WXWIDGETS_ARCH_PATH=`$wxconf --exec-prefix`
-+ if test -n "$with_wxwidgets_ucs"; then
-+ wxcfflags=--unicode=$with_wxwidgets_ucs
-+ else
-+ wxcfflags=
- fi
-- if test -z "$OSMESA_LIBS"; then
-- if test "${with_mesa:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-mesa explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-mesa explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+ for x in `"$wxconf" $wxcfflags --libs --static 2>&5`; do
-+ case "$x" in
-+ -L*)
-+ d=`echo $x | sed -e 's/^-L//'`
-+ pcd=$d/pkgconfig
-+ if test -d "$pcd"; then
-+ PKG_CONFIG_PATH="${PKG_CONFIG_PATH+$PKG_CONFIG_PATH:}$pcd"
- fi
-- elif test -f "$OSMESA_PATH/lib${bit64_sfx}/libOSMesa-static.a"; then
-- OSMESA_STATIC_LIBS="$OSMESA_LDFLAGS $OPENGL_LIBPATH -lOSMesa-static -lGLU-static -lGL-static $X_ALL_LIBS"
-+ ;;
-+ esac
-+ done
-+ export PKG_CONFIG_PATH
- else
-- OSMESA_STATIC_LIBS=$OSMESA_LIBS
-+ $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
- fi
-- : ${GLUT_PATH=$NCBI/glut}
-- if test "$with_glut" != "no"; then
-- if test "${with_glut-yes}" != "yes"; then
-- GLUT_PATH=$with_glut
-+ if test -x "$wxconf" \
-+ && "$wxconf" $wxcfflags --list 2>/dev/null \
-+ | grep 'Default config is gtk2' >/dev/null; then
-+ gtkconf="pkg-config gtk+-2.0"
-+ elif test -x "$WXWIDGETS_BINPATH/gtk-config"; then
-+ gtkconf=$WXWIDGETS_BINPATH/gtk-config
-+ elif gtk-config --version >/dev/null 2>&1; then
-+ gtkconf=gtk-config
-+ else
-+ # May work without gtk-config (e.g., on Mac OS X)
-+ gtkconf=:
- fi
-- if test -d "GLUT_PATH"; then
-- GLUT_INCLUDE=-I$GLUT_PATH/include
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-+ case "$host_os" in
-+ darwin* )
-+ baseflags=""
-+ basesed='s/-isysroot [^ ]*//g; s/-arch [^ ]*//g'
-+ if test -n "$SYSROOT"; then
-+ deps=`"$wxconf" $wxcfflags --libs --static 2>/dev/null \
-+ | sed -e 's/.*\.a//'`
-+ libsed="$basesed; s/\$/ $deps/"
-+ else
-+ libsed=$basesed
-+ fi
-+ ;;
-+ * )
-+ baseflags=`$gtkconf --cflags 2>/dev/null`
-+ basesed=$no_usr_lib
-+ libsed=$basesed
-+ ;;
-+ esac
-+ { echo "$as_me:$LINENO: checking for wxWidgets${WXWIDGETS_ARCH_PATH:+ in $WXWIDGETS_ARCH_PATH}" >&5
-+echo $ECHO_N "checking for wxWidgets${WXWIDGETS_ARCH_PATH:+ in $WXWIDGETS_ARCH_PATH}... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_wxwidgets+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ if test -x "$wxconf" ; then
-+ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $GLUT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- GLUT_LDFLAGS="${ncbi_rp_L_flags}"
-+ WXWIDGETS_LIBS=`"$wxconf" $wxcfflags --libs | sed -e "$libsed; s/ -lm / /g;"`
- else
-+ WXWIDGETS_LIBS=
-+ ncbi_rp_L_sep=
- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $GLUT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `"$wxconf" $wxcfflags --libs | sed -e "$libsed; s/ -lm / /g;"`; do
-+ case "$x" in
-+ -L*)
-+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
- done
-- GLUT_LDFLAGS="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
- fi
-- LDFLAGS="$orig_LDFLAGS $GLUT_LDFLAGS $OPENGL_LIBPATH"
-- echo "$as_me:$LINENO: checking for glutInit in -lglut" >&5
--echo $ECHO_N "checking for glutInit in -lglut... $ECHO_C" >&6
--if test "${ac_cv_lib_glut_glutInit+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lglut $OPENGL_LIBS $LIBS"
-+
-+ CPPFLAGS="$WXWIDGETS_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$WXWIDGETS_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char glutInit ();
-+#include <wx/wx.h>
- int
- main ()
- {
--glutInit ();
-+ wxExit();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_lib_glut_glutInit=yes
-+ ncbi_cv_lib_wxwidgets=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ac_cv_lib_glut_glutInit=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--LIBS=$ac_check_lib_save_LIBS
-+ ncbi_cv_lib_wxwidgets=no
- fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_glut_glutInit" >&5
--echo "${ECHO_T}$ac_cv_lib_glut_glutInit" >&6
--if test $ac_cv_lib_glut_glutInit = yes; then
-- WithPackages="$WithPackages${WithPackagesSep}GLUT"; WithPackagesSep=" ";
-- GLUT_LIBS="$GLUT_LDFLAGS $OPENGL_LIBPATH -lglut -lGLU -lGL $X_ALL_LIBS"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBGLUT 1
--_ACEOF
-
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
- else
-- GLUT_LIBS=
--fi
--
-- if test -z "$GLUT_LIBS"; then
-- if test "${with_glut:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-glut explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-glut explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+ ncbi_cv_lib_wxwidgets=no
- fi
- fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_wxwidgets" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_wxwidgets" >&6; }
-+ if test "$ncbi_cv_lib_wxwidgets" = "no"; then
-+ if test "${with_wxwidgets:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-wxwidgets explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-wxwidgets explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
-- : ${GLEW_PATH=$NCBI/glew}
-- if test "$with_glew" != "no"; then
-- if test "${with_glew-yes}" != "yes"; then
-- GLEW_PATH=$with_glew
- fi
-- if test -d "$GLEW_PATH"; then
-- if test -d "$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx"; then
-- GLEW_PATH=$GLEW_PATH/$compiler_vpfx$DEBUG_SFX$bit64_sfx
-- elif test -d "$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx"; then
-- GLEW_PATH=$GLEW_PATH/$compiler_pfx$DEBUG_SFX$bit64_sfx
-- elif test -d "$GLEW_PATH/$DEBUG_SFX$bit64_sfx"; then
-- GLEW_PATH=$GLEW_PATH/$DEBUG_SFX$bit64_sfx
- fi
-- ncbi_fix_dir_tmp=`if cd $GLEW_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $GLEW_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- GLEW_PATH=$ncbi_fix_dir_tmp2
-+
-+if test "$with_wxwidgets" = "no" ; then
-+ WXWIDGETS_LIBPATH="No_wxWidgets"
-+ WXWIDGETS_INCLUDE=
-+ WXWIDGETS_LIBS=
-+ WXWIDGETS_STATIC_LIBS=
-+ WXWIDGETS_GL_LIBS=
-+ WXWIDGETS_GL_STATIC_LIBS=
-+ WXWIDGETS_POST_LINK=:
- else
-- case "$GLEW_PATH" in
-- /*) ;;
-- * ) GLEW_PATH=$ncbi_fix_dir_tmp ;;
-+ WithPackages="$WithPackages${WithPackagesSep}wxWidgets"; WithPackagesSep=" "
-+ case "`"$wxconf" $wxcfflags --version`" in
-+ 1.* | 2.[0-7].*)
-+ wxlibs=std
-+ ;;
-+ *)
-+ WithPackages="$WithPackages${WithPackagesSep}wx2.8"; WithPackagesSep=" "
-+ wxlibs=std,richtext,aui,propgrid
-+ ;;
- esac
-+ # The "yes" may have been cached; get the actual settings again if needed
-+ if test -z "$WXWIDGETS_INCLUDE"; then
-+ WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
- fi
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ WXWIDGETS_LIBS=`$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; s/ -lm / /g;"`
-+ else
-+ WXWIDGETS_LIBS=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; s/ -lm / /g;"`; do
-+ case "$x" in
-+ -L*)
-+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
- ;;
-- /*) GLEW_PATH=$ncbi_fix_dir_tmp ;;
- esac
-- GLEW_LIBDIR=$GLEW_PATH/lib
-- if test -n "$bit64_sfx" -a -d $GLEW_LIBDIR$bit64_sfx; then
-- if test -d $GLEW_LIBDIR; then
-- for x in $GLEW_LIBDIR/libGLEW*; do
-- if cmp -s "$x" "$GLEW_LIBDIR$bit64_sfx/`basename \"$x\"`"; then
-- :
-- else
-- GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
-- break
-- fi
-+ ncbi_rp_L_sep=" "
- done
-- else
-- GLEW_LIBDIR=$GLEW_LIBDIR$bit64_sfx
-- fi
-- fi
-- glew_config="eval PKG_CONFIG_PATH=\"$GLEW_LIBDIR/pkgconfig\" pkg-config"
-- else
-- glew_config=pkg-config
-+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
- fi
-- if pkg-config --version >/dev/null 2>&1; then
-- if $glew_config glewmx --exists >/dev/null 2>&1 \
-- && test -n "`$glew_config glewmx --libs 2>/dev/null`"; then
-- glew_config="$glew_config glewmx"
-- elif $glew_config glew --exists >/dev/null 2>&1 \
-- && test -n "`$glew_config glew --libs 2>/dev/null`"; then
-- glew_config="$glew_config glew"
-+ WXWIDGETS_STATIC_LIBS=`"$wxconf" $wxcfflags --libs --static $wxlibs \
-+ 2>/dev/null | sed -e "$basesed; s/ -lm / /g;"`
-+ if test -n "$WXWIDGETS_STATIC_LIBS"; then
-+ # Allow direct use of underlying libraries with strict linkers
-+ WXWIDGETS_LIBS="$WXWIDGETS_LIBS `echo $WXWIDGETS_STATIC_LIBS | sed -e 's/.*\.a *//'`"
- else
-- glew_config=
-+ WXWIDGETS_STATIC_LIBS=$WXWIDGETS_LIBS
- fi
-- if test -n "$glew_config"; then
-- GLEW_INCLUDE=`$glew_config --cflags | sed 's:/GL *$::'`
-- GLEW_LDFLAGS=`$glew_config --libs-only-L`
-- glew_libname=`$glew_config --libs-only-l | sed -e 's/-l//'`
-+ WXWIDGETS_GL_LIBS=`"$wxconf" $wxcfflags --libs gl | sed -e "$basesed"`
-+ WXWIDGETS_GL_STATIC_LIBS=`"$wxconf" $wxcfflags --libs gl --static \
-+ 2>/dev/null | sed -e "$basesed; s|-lGLU* -lGLU*|$OPENGL_STATIC_LIBS|"`
-+ : ${WXWIDGETS_GL_STATIC_LIBS:=$WXWIDGETS_GL_LIBS}
-+ WXWIDGETS_POST_LINK=`"$wxconf" $wxcfflags --rezflags 2>/dev/null`
-+ test -n "$WXWIDGETS_POST_LINK" || WXWIDGETS_POST_LINK=:
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_WXWIDGETS 1
-+_ACEOF
-+
- fi
-+
-+
-+## In-house Fast-CGI library
-+if test "$with_fastcgi" != "no" ; then
-+ case "$with_fastcgi" in
-+ yes | "" ) ;;
-+ */* ) FASTCGI_PATH=$with_fastcgi ;;
-+ * ) FASTCGI_PATH=$NCBI/fcgi-${with_fastcgi} ;;
-+ esac
-+ if test -d "$FASTCGI_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $FASTCGI_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $FASTCGI_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ FASTCGI_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$FASTCGI_PATH" in
-+ /*) ;;
-+ * ) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
-- if test -z "$glew_libname" -a -d "$GLEW_PATH"; then
-- GLEW_INCLUDE=-I$GLEW_PATH/include
-- GLEW_LDFLAGS=-L$GLEW_LIBDIR
-+ ;;
-+ /*) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
-- LDFLAGS="$orig_LDFLAGS $GLEW_LDFLAGS"
-- LIBS="$OPENGL_LIBS $DL_LIBS $orig_LIBS"
-- saved_LIBS=$LIBS
-- echo "$as_me:$LINENO: checking for library containing glewGetExtension" >&5
--echo $ECHO_N "checking for library containing glewGetExtension... $ECHO_C" >&6
--if test "${ac_cv_search_glewGetExtension+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
-+ FASTCGI_INCLUDE="-I$FASTCGI_PATH/include${bit64_sfx}"
-+ if test "$with_debug" = "no" ; then
-+ FASTCGI_LIBDIR="$FASTCGI_PATH/lib${bit64_sfx}"
- else
-- ac_func_search_save_LIBS=$LIBS
--ac_cv_search_glewGetExtension=no
--cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char glewGetExtension ();
--int
--main ()
--{
--glewGetExtension ();
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ac_cv_search_glewGetExtension="none required"
-+ FASTCGI_LIBDIR="$FASTCGI_PATH/altlib${bit64_sfx}"
-+ fi
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $FASTCGI_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ FASTCGI_LIBS="${ncbi_rp_L_flags} -lfcgi $NETWORK_LIBS"
- else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $FASTCGI_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ FASTCGI_LIBS="${ncbi_rp_L_flags}${ncbi_rp_R_flags} -lfcgi $NETWORK_LIBS"
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--if test "$ac_cv_search_glewGetExtension" = no; then
-- for ac_lib in "$GLEW_LIBS" $glew_libname GLEWmx GLEW; do
-- LIBS="-l$ac_lib $ac_func_search_save_LIBS"
-+ FASTCGI_OBJS="fcgibuf"
-+ LIBS="$FASTCGI_LIBS $orig_LIBS"
-+ { echo "$as_me:$LINENO: checking for FastCGI libraries${FASTCGI_PATH:+ in $FASTCGI_PATH}" >&5
-+echo $ECHO_N "checking for FastCGI libraries${FASTCGI_PATH:+ in $FASTCGI_PATH}... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_fcgi+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ CPPFLAGS="$FASTCGI_INCLUDE $orig_CPPFLAGS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char glewGetExtension ();
-+#include <fcgiapp.h>
- int
- main ()
- {
--glewGetExtension ();
-+ (void) FCGX_IsCGI();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ac_cv_search_glewGetExtension="-l$ac_lib"
--break
-+ ncbi_cv_lib_fcgi=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-+ ncbi_cv_lib_fcgi=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
-- done
--fi
--LIBS=$ac_func_search_save_LIBS
--fi
--echo "$as_me:$LINENO: result: $ac_cv_search_glewGetExtension" >&5
--echo "${ECHO_T}$ac_cv_search_glewGetExtension" >&6
--if test "$ac_cv_search_glewGetExtension" != no; then
-- test "$ac_cv_search_glewGetExtension" = "none required" || LIBS="$ac_cv_search_glewGetExtension $LIBS"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBGLEW 1
--_ACEOF
--
-- test "x$ac_cv_search_glewGetExtension" = "xnone required" || GLEW_LIBS=$ac_cv_search_glewGetExtension
--fi
--
-- LIBS=$saved_LIBS
-
-- if test "$ac_cv_search_glewGetExtension" = no; then
-- GLEW_INCLUDE=
-- GLEW_LIBS=
-- if test "${with_glew:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-glew explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-glew explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
- fi
-- if test "${with_glew_mx:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_fcgi" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_fcgi" >&6; }
-+ if test "$ncbi_cv_lib_fcgi" = "no"; then
-+ if test "${with_fastcgi:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-fastcgi explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-fastcgi explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
-- else
-- if test -z "${tmp_LIBS+set}"; then
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- tmp_LIBS=`echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`
-- else
-- tmp_LIBS=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `echo $GLEW_LDFLAGS $GLEW_LIBS | sed -e ""`; do
-- case "$x" in
-- -L*)
-- tmp_LIBS="$tmp_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-- done
-- tmp_LIBS="$tmp_LIBS${ncbi_rp_R_flags}"
-- fi
- fi
-- GLEW_LIBS=$tmp_LIBS
-- WithPackages="$WithPackages${WithPackagesSep}GLEW"; WithPackagesSep=" "
-- CPPFLAGS="$orig_CPPFLAGS $GLEW_INCLUDE $OPENGL_INCLUDE"
-- LIBS="$GLEW_LIBS $OPENGL_LIBS $DL_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for GLEW multi-context (MX) support (recommended)" >&5
--echo $ECHO_N "checking for GLEW multi-context (MX) support (recommended)... $ECHO_C" >&6
--if test "${ncbi_cv_lib_glew_mx+set}" = set; then
-+
-+for ac_func in FCGX_Accept_r
-+do
-+as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- cat >conftest.$ac_ext <<_ACEOF
-@@ -28517,3446 +33192,3722 @@
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#define GLEW_MX 1
-- #include <GL/glew.h>
-+/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
-+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
-+#define $ac_func innocuous_$ac_func
-+
-+/* System header to define __stub macros and hopefully few prototypes,
-+ which can conflict with char $ac_func (); below.
-+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-+ <limits.h> exists even on freestanding compilers. */
-+
-+#ifdef __STDC__
-+# include <limits.h>
-+#else
-+# include <assert.h>
-+#endif
-+
-+#undef $ac_func
-+
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
-+#ifdef __cplusplus
-+extern "C"
-+#endif
-+char $ac_func ();
-+/* The GNU C library defines this for functions which it implements
-+ to always fail with ENOSYS. Some functions are actually named
-+ something starting with __ and the normal name is an alias. */
-+#if defined __stub_$ac_func || defined __stub___$ac_func
-+choke me
-+#endif
-+
- int
- main ()
- {
--glewContextInit(NULL);
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_glew_mx=yes
-+ eval "$as_ac_var=yes"
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_glew_mx=no
-+ eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_glew_mx" >&5
--echo "${ECHO_T}$ncbi_cv_lib_glew_mx" >&6
-- if test $ncbi_cv_lib_glew_mx = yes; then
-- GLEW_INCLUDE="$GLEW_INCLUDE -DGLEW_MX"
-- else
-- if test "${with_glew_mx:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-glew-mx explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-glew-mx explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- : ${GLEW_STATIC_LIBS=$GLEW_LIBDIR/libGLEW-static.a}
-- test -f "$GLEW_STATIC_LIBS" || GLEW_STATIC_LIBS=$GLEW_LIBS
-- fi
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-+if test `eval echo '${'$as_ac_var'}'` = yes; then
-+ cat >>confdefs.h <<_ACEOF
-+#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-+_ACEOF
-+
- fi
-+done
-+
- fi
-+if test "$with_fastcgi" = "no" ; then
-+ FASTCGI_PATH="No_FastCgi"
-+ FASTCGI_INCLUDE=
-+ FASTCGI_LIBS=
-+ FASTCGI_OBJS=
-+else
-+ WithPackages="$WithPackages${WithPackagesSep}Fast-CGI"; WithPackagesSep=" "
-
--LDFLAGS=$orig_LDFLAGS
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBFASTCGI 1
-+_ACEOF
-
-+fi
-
--## wxWidgets
--# Insist on single-byte builds by default, per various projects' expectations.
--: ${with_wxwidgets_ucs=no}
--if test "$with_wxwidgets" != "no" ; then
-- case "$with_wxwidgets" in
-- yes | "" ) : ${WXWIDGETS_PATH=$NCBI/wxwidgets} ;;
-- * ) WXWIDGETS_PATH=$with_wxwidgets ;;
-- esac
-- if test -d "$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-- -a -z "$WXWIDGETS_ARCH_PATH"; then
-- WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-- elif test -d "$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-- -a -z "$WXWIDGETS_ARCH_PATH"; then
-- WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-- else
-- WXWIDGETS_ARCH_PATH="$WXWIDGETS_PATH"
-+
-+## NCBI SSS libraries
-+if test "$with_sybase" = "no" ; then
-+ if test "${with_sssdb:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
-- WXWIDGETS_BINPATH=${WXWIDGETS_BINPATH:="$WXWIDGETS_ARCH_PATH/bin"}
-- WXWIDGETS_LIBPATH=${WXWIDGETS_LIBPATH:="$WXWIDGETS_ARCH_PATH/lib"}
-- WXWIDGETS_INCLUDE=
-- $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
-- # Extract the first word of "wx-config", so it can be a program name with args.
--set dummy wx-config; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_path_wxconf+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- case $wxconf in
-- [\\/]* | ?:[\\/]*)
-- ac_cv_path_wxconf="$wxconf" # Let the user override the test with a path.
-- ;;
-- *)
-- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--as_dummy="$WXWIDGETS_BINPATH:$PATH"
--for as_dir in $as_dummy
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_path_wxconf="$as_dir/$ac_word$ac_exec_ext"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
- fi
--done
--done
-
-+case "$host_os:$compiler:$compiler_version" in
-+ linux*:GCC:*)
-+ : ${with_included_sss=yes}
- ;;
- esac
--fi
--wxconf=$ac_cv_path_wxconf
-
--if test -n "$wxconf"; then
-- echo "$as_me:$LINENO: result: $wxconf" >&5
--echo "${ECHO_T}$wxconf" >&6
-+if test "$with_sss" != "no" ; then
-+ local_sss=${real_srcdir}/src/internal/sss
-+ if test "${with_included_sss-no}" = "yes" \
-+ -a -f "$local_sss/utils/sssdebug.hpp" \
-+ -a -f "${local_sss}srv/cli/sssconnection.cpp"; then
-+ with_included_sss=yes
-+ NCBI_SSS_PATH=$local_sss
-+ NCBI_SSS_INCLUDE="\$(incdir)/sss"
-+ NCBI_SSS_LIBPATH="\$(libdir)"
-+ WithPackages="$WithPackages${WithPackagesSep}LocalSSS"; WithPackagesSep=" "
-+ if test -f "$local_sss/../msgmail2/asn/msgmail.asn"; then
-+ WithPackages="$WithPackages${WithPackagesSep}LocalMSGMAIL2"; WithPackagesSep=" "
-+ fi
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ with_included_sss=no
- fi
--
-- if test -x "$wxconf"; then
-- WXWIDGETS_ARCH_PATH=`$wxconf --exec-prefix`
-- if test -n "$with_wxwidgets_ucs"; then
-- wxcfflags=--unicode=$with_wxwidgets_ucs
-+ if test "${with_sss-yes}" = yes; then
-+ NCBI_SSS_PATH=${NCBI_SSS_PATH:="$NCBI/sss/BUILD"}
- else
-- wxcfflags=
-+ NCBI_SSS_PATH=$with_sss
- fi
-- for x in `"$wxconf" $wxcfflags --libs --static 2>&5`; do
-- case "$x" in
-- -L*)
-- d=`echo $x | sed -e 's/^-L//'`
-- pcd=$d/pkgconfig
-- if test -d "$pcd"; then
-- PKG_CONFIG_PATH="${PKG_CONFIG_PATH+$PKG_CONFIG_PATH:}$pcd"
-+ NCBI_SSS_INCLUDE=${NCBI_SSS_INCLUDE:="$NCBI_SSS_PATH/include"}
-+ if test -z "$NCBI_SSS_LIBPATH" ; then
-+ NCBI_SSS_LIBPATH="${NCBI_SSS_PATH}/lib/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"
-+ if test "$with_mt" = "yes" ; then
-+ NCBI_SSS_LIBPATH="${NCBI_SSS_LIBPATH}mt"
-+ fi
-+ fi
-+ { echo "$as_me:$LINENO: checking for NCBI SSS directories${NCBI_SSS_PATH:+ in $NCBI_SSS_PATH}" >&5
-+echo $ECHO_N "checking for NCBI SSS directories${NCBI_SSS_PATH:+ in $NCBI_SSS_PATH}... $ECHO_C" >&6; }
-+ if test "$with_included_sss" = "yes"; then
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; } # duh
-+ elif test ! -d "${NCBI_SSS_LIBPATH}" -o ! -d "${NCBI_SSS_INCLUDE}" ; then
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+ if test "${with_sss:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
-- ;;
-- esac
-- done
-- export PKG_CONFIG_PATH
- else
-- $as_unset wxconf || test "${wxconf+set}" != set || { wxconf=; export wxconf; }
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
- fi
-- if test -x "$wxconf" \
-- && "$wxconf" $wxcfflags --list 2>/dev/null \
-- | grep 'Default config is gtk2' >/dev/null; then
-- gtkconf="pkg-config gtk+-2.0"
-- elif test -x "$WXWIDGETS_BINPATH/gtk-config"; then
-- gtkconf=$WXWIDGETS_BINPATH/gtk-config
-- elif gtk-config --version >/dev/null 2>&1; then
-- gtkconf=gtk-config
-- else
-- # May work without gtk-config (e.g., on Mac OS X)
-- gtkconf=:
- fi
-- case "$host_os" in
-- darwin* )
-- baseflags=""
-- basesed='s/-isysroot [^ ]*//g; s/-arch [^ ]*//g'
-- if test -n "$SYSROOT"; then
-- deps=`"$wxconf" $wxcfflags --libs --static 2>/dev/null \
-- | sed -e 's/.*\.a//'`
-- libsed="$basesed; s/\$/ $deps/"
-- else
-- libsed=$basesed
-+
-+if test "$with_sss" = "no" ; then
-+ if test "${with_sssutils:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
-- ;;
-- * )
-- baseflags=`$gtkconf --cflags 2>/dev/null`
-- basesed=$no_usr_lib
-- libsed=$basesed
-- ;;
-- esac
-- echo "$as_me:$LINENO: checking for wxWidgets in $WXWIDGETS_ARCH_PATH" >&5
--echo $ECHO_N "checking for wxWidgets in $WXWIDGETS_ARCH_PATH... $ECHO_C" >&6
--if test "${ncbi_cv_lib_wxwidgets+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
-+ if test "${with_sssdb:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ NCBI_SSS_INCLUDE=
-+ NCBI_SSS_LIBPATH=
-+ LIBSSSUTILS=
-+ LIBSSSDB=
- else
-- if test -x "$wxconf" ; then
-- WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- WXWIDGETS_LIBS=`"$wxconf" $wxcfflags --libs | sed -e "$libsed; "`
-+ if test "$with_included_sss" = "yes"; then
-+ NCBI_SSS_LIBPATH= # Not needed
-+ ncbi_cv_lib_sssutils=yes
-+ ncbi_cv_lib_sssdb=yes
-+ sssutils=sssutils
- else
-- WXWIDGETS_LIBS=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `"$wxconf" $wxcfflags --libs | sed -e "$libsed; "`; do
-- case "$x" in
-- -L*)
-- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-- done
-- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
-+ NCBI_SSS_LIBPATH="-L${NCBI_SSS_LIBPATH}"
- fi
-+ NCBI_SSS_INCLUDE="-I${NCBI_SSS_INCLUDE}"
-
-- CPPFLAGS="$WXWIDGETS_INCLUDE $orig_CPPFLAGS"
-- LIBS="$WXWIDGETS_LIBS $orig_LIBS"
-+ # SSS UTILS
-+ if test "$with_sssutils" != "no" ; then
-+ LIBSSSUTILS="-lsssutils"
-+ { echo "$as_me:$LINENO: checking for the NCBI SSS UTILS library" >&5
-+echo $ECHO_N "checking for the NCBI SSS UTILS library... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_sssutils+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$NCBI_SSS_LIBPATH $LIBSSSUTILS $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <wx/wx.h>
-+#include <hashtab.hpp>
- int
- main ()
- {
-- wxExit();
-+ (new C_HashTab(123))->Clear();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_wxwidgets=yes
-+ ncbi_cv_lib_sssutils=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_wxwidgets=no
-+ ncbi_cv_lib_sssutils=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-- else
-- ncbi_cv_lib_wxwidgets=no
-+fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssutils" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sssutils" >&6; }
-+ if test "$ncbi_cv_lib_sssutils" = yes; then
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBSSSUTILS 1
-+_ACEOF
-+
-+ WithPackages="$WithPackages${WithPackagesSep}SSSUTILS"; WithPackagesSep=" "
-+ if test -f "$local_sss/../ncbils2/asn/login.asn"; then
-+ if test "$with_included_sss" = yes || \
-+ grep vformat $NCBI_SSS_INCLUDE/String.hpp >/dev/null 2>&1; then
-+ WithPackages="$WithPackages${WithPackagesSep}LocalNCBILS"; WithPackagesSep=" " # temporary compatibility measure
-+ WithPackages="$WithPackages${WithPackagesSep}NCBILS2"; WithPackagesSep=" "
- fi
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_wxwidgets" >&5
--echo "${ECHO_T}$ncbi_cv_lib_wxwidgets" >&6
-- if test "$ncbi_cv_lib_wxwidgets" = "no"; then
-- if test "${with_wxwidgets:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-wxwidgets explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-wxwidgets explicitly specified, but no usable version found." >&2;}
-+ else
-+ if test "${with_sssutils:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ if test "${with_sss:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
-+ LIBSSSUTILS=""
- fi
- fi
-
--if test "$with_wxwidgets" = "no" ; then
-- WXWIDGETS_LIBPATH="No_wxWidgets"
-- WXWIDGETS_INCLUDE=
-- WXWIDGETS_LIBS=
-- WXWIDGETS_STATIC_LIBS=
-- WXWIDGETS_GL_LIBS=
-- WXWIDGETS_GL_STATIC_LIBS=
-- WXWIDGETS_POST_LINK=:
-+ # SSS DB
-+ if test "$with_sssdb" != "no" ; then
-+ if test "$with_mt" = "yes" ; then
-+ LIBSSSDB="-lsssdb -lssssys"
- else
-- WithPackages="$WithPackages${WithPackagesSep}wxWidgets"; WithPackagesSep=" "
-- case "`"$wxconf" $wxcfflags --version`" in
-- 2.[89].* | 2.[0-9][0-9]* )
-- WithPackages="$WithPackages${WithPackagesSep}wx2.8"; WithPackagesSep=" "
-- wxlibs=std,richtext,aui
-- ;;
-- *)
-- wxlibs=std
-- ;;
-- esac
-- # The "yes" may have been cached; get the actual settings again if needed
-- if test -z "$WXWIDGETS_INCLUDE"; then
-- WXWIDGETS_INCLUDE="$baseflags `"$wxconf" $wxcfflags --cflags`"
-+ LIBSSSDB="-lsssdb"
- fi
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- WXWIDGETS_LIBS=`$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; "`
-+ { echo "$as_me:$LINENO: checking for the NCBI SSS DB library" >&5
-+echo $ECHO_N "checking for the NCBI SSS DB library... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_sssdb+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- WXWIDGETS_LIBS=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$wxconf $wxcfflags --libs $wxlibs | sed -e "$libsed; "`; do
-- case "$x" in
-- -L*)
-- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- ;;
-- *)
-- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-+ CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$NCBI_SSS_LIBPATH $LIBSSSDB $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
-+ cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+#include <cslink.hpp>
-+int
-+main ()
-+{
-+ (new CSLink)->connect2server("srv", "user", "pwd", "db");
-+ ;
-+ return 0;
-+}
-+_ACEOF
-+rm -f conftest.$ac_objext conftest$ac_exeext
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
- esac
-- ncbi_rp_L_sep=" "
-- done
-- WXWIDGETS_LIBS="$WXWIDGETS_LIBS${ncbi_rp_R_flags}"
-- fi
-- WXWIDGETS_STATIC_LIBS=`"$wxconf" $wxcfflags --libs --static $wxlibs \
-- 2>/dev/null | sed -e "$basesed"`
-- if test -n "$WXWIDGETS_STATIC_LIBS"; then
-- # Allow direct use of underlying libraries with strict linkers
-- WXWIDGETS_LIBS="$WXWIDGETS_LIBS `echo $WXWIDGETS_STATIC_LIBS | sed -e 's/.*\.a *//'`"
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ncbi_cv_lib_sssdb=yes
- else
-- WXWIDGETS_STATIC_LIBS=$WXWIDGETS_LIBS
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ncbi_cv_lib_sssdb=no
- fi
-- WXWIDGETS_GL_LIBS=`"$wxconf" $wxcfflags --libs gl | sed -e "$basesed"`
-- WXWIDGETS_GL_STATIC_LIBS=`"$wxconf" $wxcfflags --libs gl --static \
-- 2>/dev/null | sed -e "$basesed; s|-lGLU* -lGLU*|$OPENGL_STATIC_LIBS|"`
-- : ${WXWIDGETS_GL_STATIC_LIBS:=$WXWIDGETS_GL_LIBS}
-- WXWIDGETS_POST_LINK=`"$wxconf" $wxcfflags --rezflags 2>/dev/null`
-- test -n "$WXWIDGETS_POST_LINK" || WXWIDGETS_POST_LINK=:
-+
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
-+fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssdb" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sssdb" >&6; }
-+ if test "$ncbi_cv_lib_sssdb" = "yes"; then
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_WXWIDGETS 1
-+#define HAVE_LIBSSSDB 1
- _ACEOF
-
-+ WithPackages="$WithPackages${WithPackagesSep}SSSDB"; WithPackagesSep=" "
-+ else
-+ if test "${with_sssdb:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
--
--
--## In-house Fast-CGI library
--if test "$with_fastcgi" != "no" ; then
-- case "$with_fastcgi" in
-- yes | "" ) : ${FASTCGI_PATH:="$NCBI/fcgi-current"} ;;
-- */* ) FASTCGI_PATH=$with_fastcgi ;;
-- * ) FASTCGI_PATH=$NCBI/fcgi-${with_fastcgi} ;;
-- esac
-- if test -d "$FASTCGI_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $FASTCGI_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $FASTCGI_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- FASTCGI_PATH=$ncbi_fix_dir_tmp2
-+ if test "${with_sss:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ LIBSSSDB=""
-+ fi
-+ fi
-+fi
-+
-+
-+# SP
-+if test "$with_sp" != "no" ; then
-+ if test -n "$SP_INCLUDE"; then
-+ SP_GENERIC="$SP_INCLUDE/../generic"
- else
-- case "$FASTCGI_PATH" in
-- /*) ;;
-- * ) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ SP_INCLUDE="$SP_PATH/include"
-+ SP_GENERIC="$SP_PATH/generic"
- fi
-- ;;
-- /*) FASTCGI_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ if test -z "$SP_LIBPATH" ; then
-+ SP_LIBPATH="${SP_PATH}/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-+ fi
-+ { echo "$as_me:$LINENO: checking for SP directories${SP_PATH:+ in $SP_PATH}" >&5
-+echo $ECHO_N "checking for SP directories${SP_PATH:+ in $SP_PATH}... $ECHO_C" >&6; }
-+ if test ! -d "${SP_LIBPATH}" -o ! -d "${SP_INCLUDE}" ; then
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+ if test "${with_sp:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
-- FASTCGI_INCLUDE="-I$FASTCGI_PATH/include${bit64_sfx}"
-- if test "$with_debug" = "no" ; then
-- FASTCGI_LIBDIR="$FASTCGI_PATH/lib${bit64_sfx}"
- else
-- FASTCGI_LIBDIR="$FASTCGI_PATH/altlib${bit64_sfx}"
-+ { echo "$as_me:$LINENO: result: yes" >&5
-+echo "${ECHO_T}yes" >&6; }
- fi
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $FASTCGI_LIBDIR; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- FASTCGI_LIBS="${ncbi_rp_L_flags} -lfcgi $NETWORK_LIBS"
-+fi
-+
-+if test "$with_sp" != "no" ; then
-+ if test -d "$SP_GENERIC"; then
-+ SP_INCLUDE="-I${SP_INCLUDE} -I${SP_GENERIC}"
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $FASTCGI_LIBDIR; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- FASTCGI_LIBS="${ncbi_rp_L_flags}${ncbi_rp_R_flags} -lfcgi $NETWORK_LIBS"
-+ SP_INCLUDE="-I${SP_INCLUDE}"
- fi
-- FASTCGI_OBJS="fcgibuf"
-- LIBS="$FASTCGI_LIBS $orig_LIBS"
-- echo "$as_me:$LINENO: checking for FastCGI libraries in $FASTCGI_PATH" >&5
--echo $ECHO_N "checking for FastCGI libraries in $FASTCGI_PATH... $ECHO_C" >&6
--if test "${ncbi_cv_lib_fcgi+set}" = set; then
-+ SP_LIBS="-L$SP_LIBPATH -lsp"
-+ { echo "$as_me:$LINENO: checking for the SP SGML library" >&5
-+echo $ECHO_N "checking for the SP SGML library... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_sp+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$FASTCGI_INCLUDE $orig_CPPFLAGS"
-+ CPPFLAGS="$SP_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$SP_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <fcgiapp.h>
-+#include <SGMLApplication.h>
- int
- main ()
- {
-- (void) FCGX_IsCGI();
-+ SP_API::SGMLApplication app;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_fcgi=yes
-+ ncbi_cv_lib_sp=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_fcgi=no
-+ ncbi_cv_lib_sp=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_fcgi" >&5
--echo "${ECHO_T}$ncbi_cv_lib_fcgi" >&6
-- if test "$ncbi_cv_lib_fcgi" = "no"; then
-- if test "${with_fastcgi:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-fastcgi explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-fastcgi explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sp" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sp" >&6; }
-+ if test "$ncbi_cv_lib_sp" = "no"; then
-+ if test "${with_sp:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
-+fi
-
--for ac_func in FCGX_Accept_r
--do
--as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+if test "$with_sp" = "no" ; then
-+ SP_INCLUDE=
-+ SP_LIBS=
-+else
-+ WithPackages="$WithPackages${WithPackagesSep}SP"; WithPackagesSep=" "
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBSP 1
-+_ACEOF
-+
-+fi
-+
-+
-+## ORBacus CORBA
-+if test "$with_orbacus" != no; then
-+ if test "$with_orbacus" != yes; then
-+ ORBACUS_PATH=$with_orbacus
-+fi
-+if test -d "$ORBACUS_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $ORBACUS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $ORBACUS_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ ORBACUS_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$ORBACUS_PATH" in
-+ /*) ;;
-+ * ) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+fi
-+ fullpath=${ORBACUS_PATH}/${DEBUG_SFX}${mt_sfx}${bit64_sfx}
-+ if test -f ${fullpath}/inc/OB/Config.h ; then
-+ : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include -I$fullpath/inc"}
-+ if test -z "${ORBACUS_LIBPATH+set}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $fullpath/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $fullpath/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ elif test -f ${ORBACUS_PATH}/include/OB/Config.h ; then
-+ : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include"}
-+ if test -z "${ORBACUS_LIBPATH+set}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $ORBACUS_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $ORBACUS_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ fi
-+ case "$host_os:$with_mt" in
-+ linux*:no) LIBJTC="-lJTC -pthread" ;;
-+ *) LIBJTC="-lJTC" ;;
-+ esac
-+
-+ case "$with_mt:$ORBACUS_LIBPATH" in
-+ yes:* | *:-L*MT/lib* )
-+ LIBOB="-lOB $LIBJTC"
-+ LIBIMR="-lIMR"
-+ ;;
-+ * )
-+ LIBOB="-lOB"
-+ LIBIMR=
-+ ;;
-+ esac
-+ { echo "$as_me:$LINENO: checking for ORBacus${ORBACUS_PATH:+ in $ORBACUS_PATH}" >&5
-+echo $ECHO_N "checking for ORBacus${ORBACUS_PATH:+ in $ORBACUS_PATH}... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_orbacus+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-+ CPPFLAGS="$ORBACUS_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$ORBACUS_LIBPATH $LIBOB $NETWORK_LIBS $DL_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
-- For example, HP-UX 11i <limits.h> declares gettimeofday. */
--#define $ac_func innocuous_$ac_func
--
--/* System header to define __stub macros and hopefully few prototypes,
-- which can conflict with char $ac_func (); below.
-- Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-- <limits.h> exists even on freestanding compilers. */
--
--#ifdef __STDC__
--# include <limits.h>
--#else
--# include <assert.h>
--#endif
--
--#undef $ac_func
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--{
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char $ac_func ();
--/* The GNU C library defines this for functions which it implements
-- to always fail with ENOSYS. Some functions are actually named
-- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
--choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
--#endif
--
-+#include <OB/CORBA.h>
- int
- main ()
- {
--return f != $ac_func;
-+
-+ int c = 0;
-+ char* v[] = { NULL };
-+ CORBA::ORB_var orb = CORBA::ORB_init(c, v);
-+ if (!CORBA::is_nil(orb)) orb->destroy();
-+
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- eval "$as_ac_var=yes"
-+ ncbi_cv_lib_orbacus=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--eval "$as_ac_var=no"
-+ ncbi_cv_lib_orbacus=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
--if test `eval echo '${'$as_ac_var'}'` = yes; then
-- cat >>confdefs.h <<_ACEOF
--#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
--_ACEOF
--
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_orbacus" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_orbacus" >&6; }
-+ if test "$ncbi_cv_lib_orbacus" = "no"; then
-+ if test "${with_orbacus:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-orbacus explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-orbacus explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
--done
--
- fi
--if test "$with_fastcgi" = "no" ; then
-- FASTCGI_PATH="No_FastCgi"
-- FASTCGI_INCLUDE=
-- FASTCGI_LIBS=
-- FASTCGI_OBJS=
-+fi
-+if test "$with_orbacus" = no; then
-+ ORBACUS_PATH=No_ORBacus
-+ ORBACUS_INCLUDE=
-+ ORBACUS_LIBPATH=
-+ LIBOB=
-+ LIBIMR=
- else
-- WithPackages="$WithPackages${WithPackagesSep}Fast-CGI"; WithPackagesSep=" "
-+ WithPackages="$WithPackages${WithPackagesSep}ORBacus"; WithPackagesSep=" "
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBFASTCGI 1
-+#define HAVE_ORBACUS 1
- _ACEOF
-
- fi
-+# Sigh... without this, the linker pulls in the contents of the cache
-+# and then gripes about missing JTC stuff.
-+test -d SunWS_cache && rm -r SunWS_cache
-
-
--## NCBI SSS libraries
--if test "$with_sybase" = "no" ; then
-- if test "${with_sssdb:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-+## International Components for Unicode (ICU)
-+if test -z "$ICU_PATH" && icu-config --version >/dev/null 2>&1; then
-+ ICU_PATH=`icu-config --prefix`
- fi
-
--case "$host_os:$compiler:$compiler_version" in
-- linux*:GCC:*)
-- : ${with_included_sss=yes}
-- ;;
-+if test "$with_icu" != "no" ; then
-+ case "$with_icu" in
-+ yes | "" ) ;;
-+ * ) ICU_PATH=$with_icu ;;
- esac
--
--if test "$with_sss" != "no" ; then
-- local_sss=${real_srcdir}/src/internal/sss
-- if test "${with_included_sss-no}" = "yes" \
-- -a -f "$local_sss/utils/sssdebug.hpp" \
-- -a -f "${local_sss}srv/cli/sssconnection.cpp"; then
-- with_included_sss=yes
-- NCBI_SSS_PATH=$local_sss
-- NCBI_SSS_INCLUDE="\$(incdir)/sss"
-- NCBI_SSS_LIBPATH="\$(libdir)"
-- WithPackages="$WithPackages${WithPackagesSep}LocalSSS"; WithPackagesSep=" "
-- if test -f "$local_sss/../msgmail2/asn/msgmail.asn"; then
-- WithPackages="$WithPackages${WithPackagesSep}LocalMSGMAIL2"; WithPackagesSep=" "
-- fi
-- else
-- with_included_sss=no
-- fi
-- NCBI_SSS_PATH=${NCBI_SSS_PATH:="$NCBI/sss/BUILD"}
-- NCBI_SSS_INCLUDE=${NCBI_SSS_INCLUDE:="$NCBI_SSS_PATH/include"}
-- if test -z "$NCBI_SSS_LIBPATH" ; then
-- NCBI_SSS_LIBPATH="${NCBI_SSS_PATH}/lib/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"
-- if test "$with_mt" = "yes" ; then
-- NCBI_SSS_LIBPATH="${NCBI_SSS_LIBPATH}mt"
-- fi
-- fi
-- echo "$as_me:$LINENO: checking for NCBI SSS directories in $NCBI_SSS_PATH" >&5
--echo $ECHO_N "checking for NCBI SSS directories in $NCBI_SSS_PATH... $ECHO_C" >&6
-- if test "$with_included_sss" = "yes"; then
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6 # duh
-- elif test ! -d "${NCBI_SSS_LIBPATH}" -o ! -d "${NCBI_SSS_INCLUDE}" ; then
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-- if test "${with_sss:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-+ if test -d "$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
-+ -a -z "$ICU_ARCH_PATH"; then
-+ ICU_ARCH_PATH="$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-+ elif test -d "$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
-+ -a -z "$ICU_ARCH_PATH"; then
-+ ICU_ARCH_PATH="$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
- else
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
-- fi
--fi
--
--if test "$with_sss" = "no" ; then
-- if test "${with_sssutils:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- if test "${with_sssdb:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+ ICU_ARCH_PATH="$ICU_PATH"
- fi
-- NCBI_SSS_INCLUDE=
-- NCBI_SSS_LIBPATH=
-- LIBSSSUTILS=
-- LIBSSSDB=
-+ ICU_BINPATH=${ICU_BINPATH:="$ICU_ARCH_PATH/bin"}
-+ ICU_LIBPATH=${ICU_LIBPATH:="$ICU_ARCH_PATH/lib"}
-+ ICU_INCLUDE=
-+ { echo "$as_me:$LINENO: checking for ICU${ICU_ARCH_PATH:+ in $ICU_ARCH_PATH}" >&5
-+echo $ECHO_N "checking for ICU${ICU_ARCH_PATH:+ in $ICU_ARCH_PATH}... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_icu+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- if test "$with_included_sss" = "yes"; then
-- NCBI_SSS_LIBPATH= # Not needed
-- ncbi_cv_lib_sssutils=yes
-- ncbi_cv_lib_sssdb=yes
-- sssutils=sssutils
-+ ICU_CONFIG=`$ICU_BINPATH/icu-config --bindir 2>/dev/null`/icu-config
-+ if test -x "$ICU_CONFIG" ; then
-+ ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
- else
-- NCBI_SSS_LIBPATH="-L${NCBI_SSS_LIBPATH}"
-+ ICU_LIBS=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
-+ case "$x" in
-+ -L*)
-+ ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
-+ done
-+ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
- fi
-- NCBI_SSS_INCLUDE="-I${NCBI_SSS_INCLUDE}"
-+ ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
-
-- # SSS UTILS
-- if test "$with_sssutils" != "no" ; then
-- LIBSSSUTILS="-lsssutils"
-- echo "$as_me:$LINENO: checking for the NCBI SSS UTILS library" >&5
--echo $ECHO_N "checking for the NCBI SSS UTILS library... $ECHO_C" >&6
--if test "${ncbi_cv_lib_sssutils+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
-- LIBS="$NCBI_SSS_LIBPATH $LIBSSSUTILS $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
-+ CPPFLAGS="$ICU_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$ICU_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <hashtab.hpp>
-+#include <unicode/unistr.h>
- int
- main ()
- {
-- (new C_HashTab(123))->Clear();
-+int32_t i = UNICODE_STRING_SIMPLE("foo").indexOf('f');
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_sssutils=yes
-+ ncbi_cv_lib_icu=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_sssutils=no
-+ ncbi_cv_lib_icu=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-+ else
-+ ncbi_cv_lib_icu=no
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssutils" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sssutils" >&6
-- if test "$ncbi_cv_lib_sssutils" = yes; then
-+fi
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_icu" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_icu" >&6; }
-+ if test "$ncbi_cv_lib_icu" = "no"; then
-+ if test "${with_icu:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-icu explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-icu explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ fi
-+fi
-+
-+if test "$with_icu" = "no" ; then
-+ ICU_PATH="No_ICU"
-+ ICU_INCLUDE=
-+ ICU_LIBS=
-+ ICU_STATIC_LIBS=
-+else
-+ WithPackages="$WithPackages${WithPackagesSep}ICU"; WithPackagesSep=" "
-+ ICU_CONFIG="`$ICU_BINPATH/icu-config --bindir`/icu-config"
-+ # The "yes" may have been cached; get the actual settings again if needed
-+ if test -z "$ICU_INCLUDE"; then
-+ ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
-+ else
-+ ICU_LIBS=
-+ ncbi_rp_L_sep=
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
-+ case "$x" in
-+ -L*)
-+ ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
-+ done
-+ ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
-+ fi
-+ ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
-+ fi
-+ ICU_STATIC_LIBS=`$ICU_CONFIG --ldflags-libsonly | sed -e 's/-licu/-lsicu/g'`
-+ ICU_STATIC_LIBS="`$ICU_CONFIG --ldflags-searchpath` $ICU_STATIC_LIBS"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBSSSUTILS 1
-+#define HAVE_ICU 1
- _ACEOF
-
-- WithPackages="$WithPackages${WithPackagesSep}SSSUTILS"; WithPackagesSep=" "
-- if test -f "$local_sss/../ncbils2/asn/login.asn"; then
-- if test "$with_included_sss" = yes || \
-- grep vformat $NCBI_SSS_INCLUDE/String.hpp >/dev/null 2>&1; then
-- WithPackages="$WithPackages${WithPackagesSep}LocalNCBILS"; WithPackagesSep=" " # temporary compatibility measure
-- WithPackages="$WithPackages${WithPackagesSep}NCBILS2"; WithPackagesSep=" "
- fi
-+
-+
-+### XML/XSL libraries
-+if test "$with_expat" != "no"; then
-+ case "$with_expat" in
-+ yes | "" ) ;;
-+ * ) EXPAT_PATH=$with_expat ;;
-+ esac
-+ if test -d "$EXPAT_PATH"; then
-+ in_path=" in $EXPAT_PATH"
-+ if test -z "$EXPAT_INCLUDE" -a -d "$EXPAT_PATH/include"; then
-+ EXPAT_INCLUDE="-I$EXPAT_PATH/include"
- fi
-+ if test -n "$EXPAT_LIBPATH"; then
-+ :
-+ elif test -d "$EXPAT_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $EXPAT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ EXPAT_LIBPATH="${ncbi_rp_L_flags}"
- else
-- if test "${with_sssutils:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sssutils explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sssutils explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- if test "${with_sss:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $EXPAT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- LIBSSSUTILS=""
-+ elif test -d "$EXPAT_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $EXPAT_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ EXPAT_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $EXPAT_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
--
-- # SSS DB
-- if test "$with_sssdb" != "no" ; then
-- if test "$with_mt" = "yes" ; then
-- LIBSSSDB="-lsssdb -lssssys"
-+ EXPAT_LIBS="$EXPAT_LIBPATH -lexpat "
- else
-- LIBSSSDB="-lsssdb"
-+ EXPAT_INCLUDE=""
-+ EXPAT_LIBS="-lexpat "
-+ in_path=
- fi
-- echo "$as_me:$LINENO: checking for the NCBI SSS DB library" >&5
--echo $ECHO_N "checking for the NCBI SSS DB library... $ECHO_C" >&6
--if test "${ncbi_cv_lib_sssdb+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libexpat$in_path" >&5
-+echo $ECHO_N "checking for libexpat$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_expat+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$NCBI_SSS_INCLUDE $SYBASE_INCLUDE $orig_CPPFLAGS"
-- LIBS="$NCBI_SSS_LIBPATH $LIBSSSDB $SYBASE_LIBS $NETWORK_LIBS $DL_LIBS $orig_LIBS"
-+ CPPFLAGS=" $EXPAT_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$EXPAT_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <cslink.hpp>
-+#include <expat.h>
- int
- main ()
- {
-- (new CSLink)->connect2server("srv", "user", "pwd", "db");
-+XML_Parser parser = XML_ParserCreate("utf-8");
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_sssdb=yes
-+ ncbi_cv_lib_expat=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_sssdb=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
-+ ncbi_cv_lib_expat=no
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sssdb" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sssdb" >&6
-- if test "$ncbi_cv_lib_sssdb" = "yes"; then
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBSSSDB 1
--_ACEOF
-
-- WithPackages="$WithPackages${WithPackagesSep}SSSDB"; WithPackagesSep=" "
-- else
-- if test "${with_sssdb:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sssdb explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sssdb explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
- fi
-- if test "${with_sss:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sss explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sss explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_expat" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_expat" >&6; }
-+ if test "$ncbi_cv_lib_expat" = "no"; then
-+ if test "${with_expat:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-expat explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-expat explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
-- LIBSSSDB=""
- fi
- fi
-+ if test "$with_expat" = "no"; then
-+ EXPAT_PATH="No_EXPAT"
-+ EXPAT_INCLUDE=
-+ EXPAT_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}EXPAT"; WithPackagesSep=" "
-+ EXPAT_INCLUDE=" $EXPAT_INCLUDE"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBEXPAT 1
-+_ACEOF
-+
- fi
-
-
--# SP
--if test "$with_sp" != "no" ; then
-- SP_PATH=${SP_PATH:="$NCBI/SP"}
-- if test -n "$SP_INCLUDE"; then
-- SP_GENERIC="$SP_INCLUDE/../generic"
-+
-+if test -f "${EXPAT_PATH}/lib${bit64_sfx}/libexpat-static.a"; then
-+ EXPAT_STATIC_LIBS="-L${EXPAT_PATH}/lib${bit64_sfx} -lexpat-static"
- else
-- SP_INCLUDE="$SP_PATH/include"
-- SP_GENERIC="$SP_PATH/generic"
-+ EXPAT_STATIC_LIBS=${EXPAT_LIBS}
- fi
-- if test -z "$SP_LIBPATH" ; then
-- SP_LIBPATH="${SP_PATH}/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-+vpath="$SABLOT_PATH/${compiler_vpfx}build"
-+test -d "$vpath" && SABLOT_PATH=$vpath
-+if test -d "$SABLOT_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $SABLOT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $SABLOT_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ SABLOT_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$SABLOT_PATH" in
-+ /*) ;;
-+ * ) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
-- echo "$as_me:$LINENO: checking for SP directories in $SP_PATH" >&5
--echo $ECHO_N "checking for SP directories in $SP_PATH... $ECHO_C" >&6
-- if test ! -d "${SP_LIBPATH}" -o ! -d "${SP_INCLUDE}" ; then
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-- if test "${with_sp:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-+ ;;
-+ /*) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+fi
-+if test "$with_sablot" != "no"; then
-+ case "$with_sablot" in
-+ yes | "" ) ;;
-+ * ) SABLOT_PATH=$with_sablot ;;
-+ esac
-+ if test -d "$SABLOT_PATH"; then
-+ in_path=" in $SABLOT_PATH"
-+ if test -z "$SABLOT_INCLUDE" -a -d "$SABLOT_PATH/include"; then
-+ SABLOT_INCLUDE="-I$SABLOT_PATH/include"
-+ fi
-+ if test -n "$SABLOT_LIBPATH"; then
-+ :
-+ elif test -d "$SABLOT_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $SABLOT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ SABLOT_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $SABLOT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-+ elif test -d "$SABLOT_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $SABLOT_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ SABLOT_LIBPATH="${ncbi_rp_L_flags}"
- else
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $SABLOT_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
--
--if test "$with_sp" != "no" ; then
-- if test -d "$SP_GENERIC"; then
-- SP_INCLUDE="-I${SP_INCLUDE} -I${SP_GENERIC}"
-+ SABLOT_LIBS="$SABLOT_LIBPATH -lsablot $EXPAT_LIBS"
- else
-- SP_INCLUDE="-I${SP_INCLUDE}"
-+ SABLOT_INCLUDE=""
-+ SABLOT_LIBS="-lsablot $EXPAT_LIBS"
-+ in_path=
- fi
-- SP_LIBS="-L$SP_LIBPATH -lsp"
-- echo "$as_me:$LINENO: checking for the SP SGML library" >&5
--echo $ECHO_N "checking for the SP SGML library... $ECHO_C" >&6
--if test "${ncbi_cv_lib_sp+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libsablot$in_path" >&5
-+echo $ECHO_N "checking for libsablot$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_sablot+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$SP_INCLUDE $orig_CPPFLAGS"
-- LIBS="$SP_LIBS $orig_LIBS"
-+ CPPFLAGS=" $SABLOT_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$SABLOT_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <SGMLApplication.h>
-+#include <sablot.h>
- int
- main ()
- {
-- SP_API::SGMLApplication app;
-+SDOM_Document* D; int x = SablotParse(NULL, "file:/dev/null", D);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_sp=yes
-+ ncbi_cv_lib_sablot=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_sp=no
-+ ncbi_cv_lib_sablot=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sp" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sp" >&6
-- if test "$ncbi_cv_lib_sp" = "no"; then
-- if test "${with_sp:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sp explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sp explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sablot" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sablot" >&6; }
-+ if test "$ncbi_cv_lib_sablot" = "no"; then
-+ if test "${with_sablot:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sablot explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sablot explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
--
--if test "$with_sp" = "no" ; then
-- SP_INCLUDE=
-- SP_LIBS=
-+ if test "$with_sablot" = "no"; then
-+ SABLOT_PATH="No_SABLOT"
-+ SABLOT_INCLUDE=
-+ SABLOT_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}SP"; WithPackagesSep=" "
-+ WithPackages="$WithPackages${WithPackagesSep}SABLOT"; WithPackagesSep=" "
-+ SABLOT_INCLUDE=" $SABLOT_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBSP 1
-+#define HAVE_LIBSABLOT 1
- _ACEOF
-
- fi
-
-
--## ORBacus CORBA
--if test "${with_orbacus:-yes}" = yes; then
-- if test -d $NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT; then
-- : ${ORBACUS_PATH=$NCBI/corba/${compiler_vpfx}Release${bit64_sfx}MT}
-- else
-- : ${ORBACUS_PATH=$NCBI/corba/OB-4.0.1}
-- fi
--elif test "$with_orbacus" != no; then
-- ORBACUS_PATH=$with_orbacus
--fi
--if test -d "$ORBACUS_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $ORBACUS_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $ORBACUS_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- ORBACUS_PATH=$ncbi_fix_dir_tmp2
-+
-+test -d SunWS_cache && rm -r SunWS_cache
-+if test -f "${SABLOT_PATH}/lib${bit64_sfx}/libsablot-static.a"; then
-+ SABLOT_STATIC_LIBS="-L${SABLOT_PATH}/lib${bit64_sfx} -lsablot-static $EXPAT_STATIC_LIBS"
- else
-- case "$ORBACUS_PATH" in
-- /*) ;;
-- * ) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ SABLOT_STATIC_LIBS=${SABLOT_LIBS}
- fi
-- ;;
-- /*) ORBACUS_PATH=$ncbi_fix_dir_tmp ;;
-+
-+# test -d "$LIBXML_PATH" || LIBXML_PATH=`xml2-config --prefix 2>/dev/null`
-+if test "$with_libxml" != "no"; then
-+ case "$with_libxml" in
-+ yes | "" ) ;;
-+ * ) LIBXML_PATH=$with_libxml ;;
- esac
--fi
--if test "$with_orbacus" != no; then
-- fullpath=${ORBACUS_PATH}/${DEBUG_SFX}${mt_sfx}${bit64_sfx}
-- if test -f ${fullpath}/inc/OB/Config.h ; then
-- : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include -I$fullpath/inc"}
-- if test -z "${ORBACUS_LIBPATH+set}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $fullpath/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-+ for pfx in "$compiler_vpfx" "$compiler_pfx" "" ; do
-+ vpath=$LIBXML_PATH/$pfx${DEBUG_SFX}${mt_sfx}${bit64_sfx}
-+ if test -d "$vpath" ; then
-+ LIBXML_PATH=$vpath
-+ break
-+ fi
- done
-- ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
-+ if test -d "$LIBXML_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $LIBXML_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $LIBXML_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ LIBXML_PATH=$ncbi_fix_dir_tmp2
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $fullpath/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ case "$LIBXML_PATH" in
-+ /*) ;;
-+ * ) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ in_path=" in $LIBXML_PATH"
-+ if test -n "$LIBXML_INCLUDE"; then
-+ :
-+ elif test -d "$LIBXML_PATH/include/libxml2/libxml"; then
-+ LIBXML_INCLUDE="-I$LIBXML_PATH/include/libxml2 -I$LIBXML_PATH/include"
-+ elif test -d "$LIBXML_PATH/include/libxml"; then
-+ LIBXML_INCLUDE="-I$LIBXML_PATH/include";
- fi
-+ if test -d "$LIBXML_PATH/lib${bit64_sfx}"; then
-+ LIBXML_LIBPATH_="$LIBXML_PATH/lib${bit64_sfx}"
-+ elif test -d "$LIBXML_PATH/lib"; then
-+ LIBXML_LIBPATH_="$LIBXML_PATH/lib"
- fi
-- elif test -f ${ORBACUS_PATH}/include/OB/Config.h ; then
-- : ${ORBACUS_INCLUDE="-I$ORBACUS_PATH/include"}
-- if test -z "${ORBACUS_LIBPATH+set}"; then
-+ if test -z "${LIBXML_LIBPATH+set}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $ORBACUS_PATH/lib; do
-+ for x in $LIBXML_LIBPATH_; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- ORBACUS_LIBPATH="${ncbi_rp_L_flags}"
-+ LIBXML_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $ORBACUS_PATH/lib; do
-+ for x in $LIBXML_LIBPATH_; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- ORBACUS_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ LIBXML_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-+ LIBXML_LIBS="$LIBXML_LIBPATH -lxml2"
-+ else
-+ LIBXML_INCLUDE="-I/usr/include/libxml2"
-+ LIBXML_LIBS="-lxml2"
-+ in_path=
- fi
-- case "$host_os:$with_mt" in
-- linux*:no) LIBJTC="-lJTC -pthread" ;;
-- *) LIBJTC="-lJTC" ;;
-- esac
--
-- case "$with_mt:$ORBACUS_LIBPATH" in
-- yes:* | *:-L*MT/lib* )
-- LIBOB="-lOB $LIBJTC"
-- LIBIMR="-lIMR"
-- ;;
-- * )
-- LIBOB="-lOB"
-- LIBIMR=
-- ;;
-- esac
-- echo "$as_me:$LINENO: checking for ORBacus in $ORBACUS_PATH" >&5
--echo $ECHO_N "checking for ORBacus in $ORBACUS_PATH... $ECHO_C" >&6
--if test "${ncbi_cv_lib_orbacus+set}" = set; then
-+ LIBXML_LIBS="$LIBXML_LIBS $ICONV_LIBS"
-+ { echo "$as_me:$LINENO: checking for libxml2$in_path" >&5
-+echo $ECHO_N "checking for libxml2$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_libxml+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$ORBACUS_INCLUDE $orig_CPPFLAGS"
-- LIBS="$ORBACUS_LIBPATH $LIBOB $NETWORK_LIBS $DL_LIBS $orig_LIBS"
-+ CPPFLAGS="$LIBXML_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$LIBXML_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <OB/CORBA.h>
-+#include <libxml/parser.h>
- int
- main ()
- {
--
-- int c = 0;
-- char* v[] = { NULL };
-- CORBA::ORB_var orb = CORBA::ORB_init(c, v);
-- if (!CORBA::is_nil(orb)) orb->destroy();
--
-+xmlDocPtr doc = xmlParseFile("foo.xml");
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_orbacus=yes
-+ ncbi_cv_lib_libxml=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_orbacus=no
-+ ncbi_cv_lib_libxml=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_orbacus" >&5
--echo "${ECHO_T}$ncbi_cv_lib_orbacus" >&6
-- if test "$ncbi_cv_lib_orbacus" = "no"; then
-- if test "${with_orbacus:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-orbacus explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-orbacus explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxml" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_libxml" >&6; }
-+ if test "$ncbi_cv_lib_libxml" = "no"; then
-+ if test "${with_libxml:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-libxml explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-libxml explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
--if test "$with_orbacus" = no; then
-- ORBACUS_PATH=No_ORBacus
-- ORBACUS_INCLUDE=
-- ORBACUS_LIBPATH=
-- LIBOB=
-- LIBIMR=
-+if test "$with_libxml" = "no"; then
-+ LIBXML_PATH="No_LIBXML"
-+ LIBXML_INCLUDE=
-+ LIBXML_LIBPATH_=
-+ LIBXML_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}ORBacus"; WithPackagesSep=" "
-+ WithPackages="$WithPackages${WithPackagesSep}LIBXML"; WithPackagesSep=" "
-+ LIBXML_INCLUDE="$LIBXML_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_ORBACUS 1
-+#define HAVE_LIBXML 1
- _ACEOF
-
- fi
--# Sigh... without this, the linker pulls in the contents of the cache
--# and then gripes about missing JTC stuff.
--test -d SunWS_cache && rm -r SunWS_cache
-
-
--## International Components for Unicode (ICU)
--if test -z "$ICU_PATH" && icu-config --version >/dev/null 2>&1; then
-- ICU_PATH=`icu-config --prefix`
-+
-+if test -f "${LIBXML_LIBPATH_}/libxml2-static.a"; then
-+ LIBXML_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxml2-static"
-+else
-+ LIBXML_STATIC_LIBS=${LIBXML_LIBS}
- fi
-
--if test "$with_icu" != "no" ; then
-- case "$with_icu" in
-- yes | "" ) : ${ICU_PATH=$NCBI/icu} ;;
-- * ) ICU_PATH=$with_icu ;;
-+: ${LIBXSLT_PATH=$LIBXML_PATH}
-+if test "$with_libxslt" != "no"; then
-+ case "$with_libxslt" in
-+ yes | "" ) ;;
-+ * ) LIBXSLT_PATH=$with_libxslt ;;
- esac
-- if test -d "$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
-- -a -z "$ICU_ARCH_PATH"; then
-- ICU_ARCH_PATH="$ICU_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-- elif test -d "$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}/lib" \
-- -a -z "$ICU_ARCH_PATH"; then
-- ICU_ARCH_PATH="$ICU_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-- else
-- ICU_ARCH_PATH="$ICU_PATH"
-+ if test -d "$LIBXSLT_PATH"; then
-+ in_path=" in $LIBXSLT_PATH"
-+ if test -z "$LIBXSLT_INCLUDE" -a -d "$LIBXSLT_PATH/include"; then
-+ LIBXSLT_INCLUDE="-I$LIBXSLT_PATH/include"
- fi
-- ICU_BINPATH=${ICU_BINPATH:="$ICU_ARCH_PATH/bin"}
-- ICU_LIBPATH=${ICU_LIBPATH:="$ICU_ARCH_PATH/lib"}
-- ICU_INCLUDE=
-- echo "$as_me:$LINENO: checking for ICU in $ICU_ARCH_PATH" >&5
--echo $ECHO_N "checking for ICU in $ICU_ARCH_PATH... $ECHO_C" >&6
--if test "${ncbi_cv_lib_icu+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- ICU_CONFIG=`$ICU_BINPATH/icu-config --bindir 2>/dev/null`/icu-config
-- if test -x "$ICU_CONFIG" ; then
-- ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
-+ if test -n "$LIBXSLT_LIBPATH"; then
-+ :
-+ elif test -d "$LIBXSLT_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
-+ for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
- else
-- ICU_LIBS=
-- ncbi_rp_L_sep=
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
-- case "$x" in
-- -L*)
-- ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
-- ;;
-- *)
-- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ done
-+ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ elif test -d "$LIBXSLT_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $LIBXSLT_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
-+ else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
-+ for x in $LIBXSLT_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
- done
-- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
-+ LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
--
-- CPPFLAGS="$ICU_INCLUDE $orig_CPPFLAGS"
-- LIBS="$ICU_LIBS $orig_LIBS"
-+ fi
-+ LIBXSLT_LIBS="$LIBXSLT_LIBPATH -lxslt "
-+ else
-+ LIBXSLT_INCLUDE=""
-+ LIBXSLT_LIBS="-lxslt "
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for libxslt$in_path" >&5
-+echo $ECHO_N "checking for libxslt$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_libxslt+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ CPPFLAGS="$LIBXML_INCLUDE $LIBXSLT_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <unicode/unistr.h>
-+#include <libxslt/xslt.h>
- int
- main ()
- {
--int32_t i = UNICODE_STRING_SIMPLE("foo").indexOf('f');
-+xsltInit()
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_icu=yes
-+ ncbi_cv_lib_libxslt=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_icu=no
-+ ncbi_cv_lib_libxslt=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-- else
-- ncbi_cv_lib_icu=no
- fi
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_icu" >&5
--echo "${ECHO_T}$ncbi_cv_lib_icu" >&6
-- if test "$ncbi_cv_lib_icu" = "no"; then
-- if test "${with_icu:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-icu explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-icu explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxslt" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_libxslt" >&6; }
-+ if test "$ncbi_cv_lib_libxslt" = "no"; then
-+ if test "${with_libxslt:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-libxslt explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-libxslt explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-+ if test "$with_libxslt" = "no"; then
-+ LIBXSLT_PATH="No_LIBXSLT"
-+ LIBXSLT_INCLUDE=
-+ LIBXSLT_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}LIBXSLT"; WithPackagesSep=" "
-+ LIBXSLT_INCLUDE="$LIBXML_INCLUDE $LIBXSLT_INCLUDE"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBXSLT 1
-+_ACEOF
-+
-+ fi
-
--if test "$with_icu" = "no" ; then
-- ICU_PATH="No_ICU"
-- ICU_INCLUDE=
-- ICU_LIBS=
-- ICU_STATIC_LIBS=
-+
-+
-+
-+# XXX - they might be in different directories in some setups
-+if test -f "${LIBXML_LIBPATH_}/libxslt-static.a"; then
-+ LIBXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxslt-static"
- else
-- WithPackages="$WithPackages${WithPackagesSep}ICU"; WithPackagesSep=" "
-- ICU_CONFIG="`$ICU_BINPATH/icu-config --bindir`/icu-config"
-- # The "yes" may have been cached; get the actual settings again if needed
-- if test -z "$ICU_INCLUDE"; then
-- ICU_INCLUDE=`$ICU_CONFIG --cppflags-searchpath`
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath | sed -e ""`
-+ LIBXSLT_STATIC_LIBS=${LIBXSLT_LIBS}
-+fi
-+
-+# Extract the first word of "xsltproc", so it can be a program name with args.
-+set dummy xsltproc; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_XSLTPROC+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- ICU_LIBS=
-- ncbi_rp_L_sep=
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$ICU_CONFIG --ldflags-searchpath | sed -e ""`; do
-- case "$x" in
-- -L*)
-- ICU_LIBS="$ICU_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-+ case $XSLTPROC in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_XSLTPROC="$XSLTPROC" # Let the user override the test with a path.
- ;;
- *)
-- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+as_dummy="$LIBXSLT_PATH/bin:`dirname $LIBXML_LIBPATH_ 2>/dev/null`/bin:$PATH"
-+for as_dir in $as_dummy
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_XSLTPROC="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
-+done
-+done
-+IFS=$as_save_IFS
-+
-+ test -z "$ac_cv_path_XSLTPROC" && ac_cv_path_XSLTPROC=":"
- ;;
- esac
-- ncbi_rp_L_sep=" "
-- done
-- ICU_LIBS="$ICU_LIBS${ncbi_rp_R_flags}"
- fi
-- ICU_LIBS="$ICU_LIBS `$ICU_CONFIG --ldflags-libsonly`"
-+XSLTPROC=$ac_cv_path_XSLTPROC
-+if test -n "$XSLTPROC"; then
-+ { echo "$as_me:$LINENO: result: $XSLTPROC" >&5
-+echo "${ECHO_T}$XSLTPROC" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
- fi
-- ICU_STATIC_LIBS=`$ICU_CONFIG --ldflags-libsonly | sed -e 's/-licu/-lsicu/g'`
-- ICU_STATIC_LIBS="`$ICU_CONFIG --ldflags-searchpath` $ICU_STATIC_LIBS"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_ICU 1
--_ACEOF
-
--fi
-
-
--### XML/XSL libraries
--if test -d "$NCBI/expat/include"; then
-- : ${EXPAT_PATH=$NCBI/expat}
--fi
--if test "$with_expat" != "no"; then
-- case "$with_expat" in
-+: ${LIBEXSLT_PATH=$LIBXSLT_PATH}
-+if test "$with_libexslt" != "no"; then
-+ case "$with_libexslt" in
- yes | "" ) ;;
-- * ) EXPAT_PATH=$with_expat ;;
-+ * ) LIBEXSLT_PATH=$with_libexslt ;;
- esac
-- if test -d "$EXPAT_PATH"; then
-- in_path=" in $EXPAT_PATH"
-- if test -z "$EXPAT_INCLUDE" -a -d "$EXPAT_PATH/include"; then
-- EXPAT_INCLUDE="-I$EXPAT_PATH/include"
-+ if test -d "$LIBEXSLT_PATH"; then
-+ in_path=" in $LIBEXSLT_PATH"
-+ if test -z "$LIBEXSLT_INCLUDE" -a -d "$LIBEXSLT_PATH/include"; then
-+ LIBEXSLT_INCLUDE="-I$LIBEXSLT_PATH/include"
- fi
-- if test -n "$EXPAT_LIBPATH"; then
-+ if test -n "$LIBEXSLT_LIBPATH"; then
- :
-- elif test -d "$EXPAT_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$LIBEXSLT_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $EXPAT_PATH/lib${bit64_sfx}; do
-+ for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- EXPAT_LIBPATH="${ncbi_rp_L_flags}"
-+ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $EXPAT_PATH/lib${bit64_sfx}; do
-+ for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$EXPAT_PATH/lib"; then
-+ elif test -d "$LIBEXSLT_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $EXPAT_PATH/lib; do
-+ for x in $LIBEXSLT_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- EXPAT_LIBPATH="${ncbi_rp_L_flags}"
-+ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $EXPAT_PATH/lib; do
-+ for x in $LIBEXSLT_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- EXPAT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- EXPAT_LIBS="$EXPAT_LIBPATH -lexpat "
-+ LIBEXSLT_LIBS="$LIBEXSLT_LIBPATH -lexslt "
- else
-- EXPAT_INCLUDE=""
-- EXPAT_LIBS="-lexpat "
-+ LIBEXSLT_INCLUDE=""
-+ LIBEXSLT_LIBS="-lexslt "
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libexpat$in_path" >&5
--echo $ECHO_N "checking for libexpat$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_expat+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libexslt$in_path" >&5
-+echo $ECHO_N "checking for libexslt$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_libexslt+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $EXPAT_INCLUDE $orig_CPPFLAGS"
-- LIBS="$EXPAT_LIBS $orig_LIBS"
-+ CPPFLAGS="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$LIBEXSLT_LIBS $LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <expat.h>
-+#include <libexslt/exslt.h>
- int
- main ()
- {
--XML_Parser parser = XML_ParserCreate("utf-8");
-+exsltRegisterAll()
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_expat=yes
-+ ncbi_cv_lib_libexslt=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_expat=no
-+ ncbi_cv_lib_libexslt=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_expat" >&5
--echo "${ECHO_T}$ncbi_cv_lib_expat" >&6
-- if test "$ncbi_cv_lib_expat" = "no"; then
-- if test "${with_expat:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-expat explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-expat explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_libexslt" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_libexslt" >&6; }
-+ if test "$ncbi_cv_lib_libexslt" = "no"; then
-+ if test "${with_libexslt:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-libexslt explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-libexslt explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_expat" = "no"; then
-- EXPAT_PATH="No_EXPAT"
-- EXPAT_INCLUDE=
-- EXPAT_LIBS=
-+ if test "$with_libexslt" = "no"; then
-+ LIBEXSLT_PATH="No_LIBEXSLT"
-+ LIBEXSLT_INCLUDE=
-+ LIBEXSLT_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}EXPAT"; WithPackagesSep=" "
-- EXPAT_INCLUDE=" $EXPAT_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}LIBEXSLT"; WithPackagesSep=" "
-+ LIBEXSLT_INCLUDE="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBEXPAT 1
-+#define HAVE_LIBEXSLT 1
- _ACEOF
-
- fi
-
-
-
--if test -f "${EXPAT_PATH}/lib${bit64_sfx}/libexpat-static.a"; then
-- EXPAT_STATIC_LIBS="-L${EXPAT_PATH}/lib${bit64_sfx} -lexpat-static"
-+
-+# XXX - they might be in different directories in some setups
-+if test -f "${LIBXML_LIBPATH_}/libexslt-static.a"; then
-+ LIBEXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lexslt-static"
- else
-- EXPAT_STATIC_LIBS=${EXPAT_LIBS}
-+ LIBEXSLT_STATIC_LIBS=${LIBEXSLT_LIBS}
- fi
--: ${SABLOT_PATH=$NCBI/Sablot}
--vpath="$SABLOT_PATH/${compiler_vpfx}build"
--test -d "$vpath" && SABLOT_PATH=$vpath
--if test -d "$SABLOT_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $SABLOT_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+
-+if test "$with_xerces" != no; then
-+ if test "${with_xerces-yes}" != yes; then
-+ XERCES_PATH=$with_xerces
-+ fi
-+ if test -d "$XERCES_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $SABLOT_PATH && $smart_pwd 2>/dev/null`
-+ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- SABLOT_PATH=$ncbi_fix_dir_tmp2
-+ XERCES_PATH=$ncbi_fix_dir_tmp2
- else
-- case "$SABLOT_PATH" in
-+ case "$XERCES_PATH" in
- /*) ;;
-- * ) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
-+ * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
- ;;
-- /*) SABLOT_PATH=$ncbi_fix_dir_tmp ;;
-+ /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
--if test "$with_sablot" != "no"; then
-- case "$with_sablot" in
-- yes | "" ) ;;
-- * ) SABLOT_PATH=$with_sablot ;;
-+ vpath="$XERCES_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-+ if test -d "$vpath/lib"; then
-+ XERCES_PATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XERCES_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$XERCES_PATH" in
-+ /*) ;;
-+ * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ elif test -d "$vpath"; then
-+ : ${XERCES_LIBPATH=$vpath}
-+ ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XERCES_LIBPATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$XERCES_LIBPATH" in
-+ /*) ;;
-+ * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ else
-+ vpath="$XERCES_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-+ if test -d "$vpath/lib"; then
-+ XERCES_PATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XERCES_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$XERCES_PATH" in
-+ /*) ;;
-+ * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ elif test -d "$vpath"; then
-+ XERCES_LIBPATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XERCES_LIBPATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$XERCES_LIBPATH" in
-+ /*) ;;
-+ * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
- esac
-- if test -d "$SABLOT_PATH"; then
-- in_path=" in $SABLOT_PATH"
-- if test -z "$SABLOT_INCLUDE" -a -d "$SABLOT_PATH/include"; then
-- SABLOT_INCLUDE="-I$SABLOT_PATH/include"
- fi
-- if test -n "$SABLOT_LIBPATH"; then
-- :
-- elif test -d "$SABLOT_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SABLOT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- SABLOT_LIBPATH="${ncbi_rp_L_flags}"
-+ fi
-+ if test -d "$XERCES_PATH"; then
-+ in_path=" in $XERCES_PATH"
-+ : ${XERCES_INCLUDE=-I$XERCES_PATH/include}
-+ : ${XERCES_LIBPATH=$XERCES_PATH/lib}
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SABLOT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ in_path=''
- fi
-- elif test -d "$SABLOT_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SABLOT_PATH/lib; do
-+ for x in $XERCES_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- SABLOT_LIBPATH="${ncbi_rp_L_flags}"
-+ XERCES_LIBPATH_="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SABLOT_PATH/lib; do
-+ for x in $XERCES_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- SABLOT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- fi
-- SABLOT_LIBS="$SABLOT_LIBPATH -lsablot $EXPAT_LIBS"
-- else
-- SABLOT_INCLUDE=""
-- SABLOT_LIBS="-lsablot $EXPAT_LIBS"
-- in_path=
-+ XERCES_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- echo "$as_me:$LINENO: checking for libsablot$in_path" >&5
--echo $ECHO_N "checking for libsablot$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_sablot+set}" = set; then
-+ XERCES_LIBS="$XERCES_LIBPATH_ -lxerces-c"
-+ { echo "$as_me:$LINENO: checking for Xerces-C++$in_path" >&5
-+echo $ECHO_N "checking for Xerces-C++$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_xerces_c+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $SABLOT_INCLUDE $orig_CPPFLAGS"
-- LIBS="$SABLOT_LIBS $orig_LIBS"
-+ CPPFLAGS="$XERCES_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$XERCES_LIBS $ICU_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <sablot.h>
-+#include <xercesc/dom/DOM.hpp>
- int
- main ()
- {
--SDOM_Document* D; int x = SablotParse(NULL, "file:/dev/null", D);
-+xercesc::DOMImplementation* impl
-+ = xercesc::DOMImplementationRegistry::getDOMImplementation
-+ (xercesc::XMLString::transcode("XML 1.0"));
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_sablot=yes
-+ ncbi_cv_lib_xerces_c=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_sablot=no
-+ ncbi_cv_lib_xerces_c=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sablot" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sablot" >&6
-- if test "$ncbi_cv_lib_sablot" = "no"; then
-- if test "${with_sablot:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sablot explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sablot explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_xerces_c" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_xerces_c" >&6; }
-+ if test $ncbi_cv_lib_xerces_c = yes; then
-+ if test -f "$XERCES_LIBPATH/libxerces-c-static.a"; then
-+ XERCES_STATIC_LIBS="-L$XERCES_LIBPATH -lxerces-c-static $CURL_LIBS"
-+ else
-+ XERCES_STATIC_LIBS=$XERCES_LIBS
-+ fi
-+ else
-+ if test "${with_xerces:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-xerces explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-xerces explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_sablot" = "no"; then
-- SABLOT_PATH="No_SABLOT"
-- SABLOT_INCLUDE=
-- SABLOT_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}SABLOT"; WithPackagesSep=" "
-- SABLOT_INCLUDE=" $SABLOT_INCLUDE"
-+if test "$with_xerces" != no; then
-+ WithPackages="$WithPackages${WithPackagesSep}Xerces"; WithPackagesSep=" "
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBSABLOT 1
-+#define HAVE_XERCES 1
- _ACEOF
-
-- fi
--
--
--
--test -d SunWS_cache && rm -r SunWS_cache
--if test -f "${SABLOT_PATH}/lib${bit64_sfx}/libsablot-static.a"; then
-- SABLOT_STATIC_LIBS="-L${SABLOT_PATH}/lib${bit64_sfx} -lsablot-static $EXPAT_STATIC_LIBS"
- else
-- SABLOT_STATIC_LIBS=${SABLOT_LIBS}
-+ XERCES_INCLUDE=
-+ XERCES_LIBS=
-+ XERCES_STATIC_LIBS=
- fi
-
--: ${LIBXML_PATH=$NCBI/libxml}
--# test -d "$LIBXML_PATH" || LIBXML_PATH=`xml2-config --prefix 2>/dev/null`
--if test "$with_libxml" != "no"; then
-- case "$with_libxml" in
-- yes | "" ) ;;
-- * ) LIBXML_PATH=$with_libxml ;;
-- esac
-- for pfx in "$compiler_vpfx" "$compiler_pfx" "" ; do
-- vpath=$LIBXML_PATH/$pfx${DEBUG_SFX}${mt_sfx}${bit64_sfx}
-- if test -d "$vpath" ; then
-- LIBXML_PATH=$vpath
-- break
-+if test "$with_xalan" != no; then
-+ if test "${with_xalan-yes}" != yes; then
-+ XALAN_PATH=$with_xalan
- fi
-- done
-- if test -d "$LIBXML_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $LIBXML_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ if test -d "$XALAN_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $LIBXML_PATH && $smart_pwd 2>/dev/null`
-+ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- LIBXML_PATH=$ncbi_fix_dir_tmp2
-+ XALAN_PATH=$ncbi_fix_dir_tmp2
- else
-- case "$LIBXML_PATH" in
-+ case "$XALAN_PATH" in
- /*) ;;
-- * ) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
-+ * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
- ;;
-- /*) LIBXML_PATH=$ncbi_fix_dir_tmp ;;
-+ /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
- esac
-- in_path=" in $LIBXML_PATH"
-- if test -n "$LIBXML_INCLUDE"; then
-- :
-- elif test -d "$LIBXML_PATH/include/libxml2/libxml"; then
-- LIBXML_INCLUDE="-I$LIBXML_PATH/include/libxml2 -I$LIBXML_PATH/include"
-- elif test -d "$LIBXML_PATH/include/libxml"; then
-- LIBXML_INCLUDE="-I$LIBXML_PATH/include";
-- fi
-- if test -d "$LIBXML_PATH/lib${bit64_sfx}"; then
-- LIBXML_LIBPATH_="$LIBXML_PATH/lib${bit64_sfx}"
-- elif test -d "$LIBXML_PATH/lib"; then
-- LIBXML_LIBPATH_="$LIBXML_PATH/lib"
- fi
-- if test -z "${LIBXML_LIBPATH+set}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $LIBXML_LIBPATH_; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- LIBXML_LIBPATH="${ncbi_rp_L_flags}"
-+ vpath="$XALAN_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-+ if test -d "$vpath/lib"; then
-+ XALAN_PATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XALAN_PATH=$ncbi_fix_dir_tmp2
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $LIBXML_LIBPATH_; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- LIBXML_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-+ case "$XALAN_PATH" in
-+ /*) ;;
-+ * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
-- LIBXML_LIBS="$LIBXML_LIBPATH -lxml2"
-+ ;;
-+ /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ elif test -d "$vpath"; then
-+ : ${XALAN_LIBPATH=$vpath}
-+ ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XALAN_LIBPATH=$ncbi_fix_dir_tmp2
- else
-- LIBXML_INCLUDE="-I/usr/include/libxml2"
-- LIBXML_LIBS="-lxml2"
-- in_path=
-+ case "$XALAN_LIBPATH" in
-+ /*) ;;
-+ * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
-- LIBXML_LIBS="$LIBXML_LIBS $ICONV_LIBS"
-- echo "$as_me:$LINENO: checking for libxml2$in_path" >&5
--echo $ECHO_N "checking for libxml2$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_libxml+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- CPPFLAGS="$LIBXML_INCLUDE $orig_CPPFLAGS"
-- LIBS="$LIBXML_LIBS $orig_LIBS"
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <libxml/parser.h>
--int
--main ()
--{
--xmlDocPtr doc = xmlParseFile("foo.xml");
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_lib_libxml=yes
-+ ;;
-+ /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
- else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_libxml=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxml" >&5
--echo "${ECHO_T}$ncbi_cv_lib_libxml" >&6
-- if test "$ncbi_cv_lib_libxml" = "no"; then
-- if test "${with_libxml:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-libxml explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-libxml explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
--fi
--if test "$with_libxml" = "no"; then
-- LIBXML_PATH="No_LIBXML"
-- LIBXML_INCLUDE=
-- LIBXML_LIBPATH_=
-- LIBXML_LIBS=
-+ vpath="$XALAN_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-+ if test -d "$vpath/lib"; then
-+ XALAN_PATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XALAN_PATH=$ncbi_fix_dir_tmp2
- else
-- WithPackages="$WithPackages${WithPackagesSep}LIBXML"; WithPackagesSep=" "
-- LIBXML_INCLUDE="$LIBXML_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBXML 1
--_ACEOF
--
-+ case "$XALAN_PATH" in
-+ /*) ;;
-+ * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
--
--
--
--if test -f "${LIBXML_LIBPATH_}/libxml2-static.a"; then
-- LIBXML_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxml2-static"
-+ ;;
-+ /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ elif test -d "$vpath"; then
-+ XALAN_LIBPATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ XALAN_LIBPATH=$ncbi_fix_dir_tmp2
- else
-- LIBXML_STATIC_LIBS=${LIBXML_LIBS}
-+ case "$XALAN_LIBPATH" in
-+ /*) ;;
-+ * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
--
--: ${LIBXSLT_PATH=$LIBXML_PATH}
--if test "$with_libxslt" != "no"; then
-- case "$with_libxslt" in
-- yes | "" ) ;;
-- * ) LIBXSLT_PATH=$with_libxslt ;;
-+ ;;
-+ /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
- esac
-- if test -d "$LIBXSLT_PATH"; then
-- in_path=" in $LIBXSLT_PATH"
-- if test -z "$LIBXSLT_INCLUDE" -a -d "$LIBXSLT_PATH/include"; then
-- LIBXSLT_INCLUDE="-I$LIBXSLT_PATH/include"
- fi
-- if test -n "$LIBXSLT_LIBPATH"; then
-- :
-- elif test -d "$LIBXSLT_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
-+ fi
-+ if test -d "$XALAN_PATH"; then
-+ in_path=" in $XALAN_PATH"
-+ : ${XALAN_INCLUDE=-I$XALAN_PATH/include}
-+ : ${XALAN_LIBPATH=$XALAN_PATH/lib}
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $LIBXSLT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ in_path=''
- fi
-- elif test -d "$LIBXSLT_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $LIBXSLT_PATH/lib; do
-+ for x in $XALAN_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}"
-+ XALAN_LIBPATH_="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $LIBXSLT_PATH/lib; do
-+ for x in $XALAN_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- LIBXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- fi
-- LIBXSLT_LIBS="$LIBXSLT_LIBPATH -lxslt "
-- else
-- LIBXSLT_INCLUDE=""
-- LIBXSLT_LIBS="-lxslt "
-- in_path=
-+ XALAN_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- echo "$as_me:$LINENO: checking for libxslt$in_path" >&5
--echo $ECHO_N "checking for libxslt$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_libxslt+set}" = set; then
-+ XALAN_LIBS="$XALAN_LIBPATH_ -lxalan-c -lxalanMsg"
-+ { echo "$as_me:$LINENO: checking for Xalan-C++$in_path" >&5
-+echo $ECHO_N "checking for Xalan-C++$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_xalan_c+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$LIBXML_INCLUDE $LIBXSLT_INCLUDE $orig_CPPFLAGS"
-- LIBS="$LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
-+ CPPFLAGS="$XALAN_INCLUDE $XERCES_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$XALAN_LIBS $XERCES_LIBS $ICU_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <libxslt/xslt.h>
-+#include <xalanc/XalanTransformer/XalanTransformer.hpp>
- int
- main ()
- {
--xsltInit()
-+xalanc::XalanTransformer::initialize();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_libxslt=yes
-+ ncbi_cv_lib_xalan_c=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_libxslt=no
-+ ncbi_cv_lib_xalan_c=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_libxslt" >&5
--echo "${ECHO_T}$ncbi_cv_lib_libxslt" >&6
-- if test "$ncbi_cv_lib_libxslt" = "no"; then
-- if test "${with_libxslt:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-libxslt explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-libxslt explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_xalan_c" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_xalan_c" >&6; }
-+ if test $ncbi_cv_lib_xalan_c = yes; then
-+ if test -f "$XALAN_LIBPATH/libxalan-c-static.a"; then
-+ XALAN_STATIC_LIBS="-L$XALAN_LIBPATH -lxalan-c-static -lxalanMsg-static"
-+ else
-+ XALAN_STATIC_LIBS=$XALAN_LIBS
-+ fi
-+ else
-+ if test "${with_xalan:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-xalan explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-xalan explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_libxslt" = "no"; then
-- LIBXSLT_PATH="No_LIBXSLT"
-- LIBXSLT_INCLUDE=
-- LIBXSLT_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}LIBXSLT"; WithPackagesSep=" "
-- LIBXSLT_INCLUDE="$LIBXML_INCLUDE $LIBXSLT_INCLUDE"
-+if test "$with_xalan" != no; then
-+ WithPackages="$WithPackages${WithPackagesSep}Xalan"; WithPackagesSep=" "
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBXSLT 1
-+#define HAVE_XALAN 1
- _ACEOF
-
-+else
-+ XALAN_INCLUDE=
-+ XALAN_LIBS=
-+ XALAN_STATIC_LIBS=
- fi
-
-+test -d SunWS_cache && rm -r SunWS_cache
-
--
--
--# XXX - they might be in different directories in some setups
--if test -f "${LIBXML_LIBPATH_}/libxslt-static.a"; then
-- LIBXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lxslt-static"
-+if test "$with_zorba" != no; then
-+ if test "${with_zorba-yes}" != yes; then
-+ ZORBA_PATH=$with_zorba
-+ fi
-+ if test -d "$ZORBA_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ ZORBA_PATH=$ncbi_fix_dir_tmp2
- else
-- LIBXSLT_STATIC_LIBS=${LIBXSLT_LIBS}
-+ case "$ZORBA_PATH" in
-+ /*) ;;
-+ * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
--
--# Extract the first word of "xsltproc", so it can be a program name with args.
--set dummy xsltproc; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_path_XSLTPROC+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
-+ ;;
-+ /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ vpath="$ZORBA_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-+ if test -d "$vpath/lib"; then
-+ ZORBA_PATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ ZORBA_PATH=$ncbi_fix_dir_tmp2
- else
-- case $XSLTPROC in
-- [\\/]* | ?:[\\/]*)
-- ac_cv_path_XSLTPROC="$XSLTPROC" # Let the user override the test with a path.
-+ case "$ZORBA_PATH" in
-+ /*) ;;
-+ * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
- ;;
-- *)
-- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--as_dummy="$LIBXSLT_PATH/bin:`dirname $LIBXML_LIBPATH_ 2>/dev/null`/bin:$PATH"
--for as_dir in $as_dummy
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_path_XSLTPROC="$as_dir/$ac_word$ac_exec_ext"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
-+ /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ elif test -d "$vpath"; then
-+ : ${ZORBA_LIBPATH=$vpath}
-+ ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$ZORBA_LIBPATH" in
-+ /*) ;;
-+ * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
--done
--done
--
-- test -z "$ac_cv_path_XSLTPROC" && ac_cv_path_XSLTPROC=":"
- ;;
-+ /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ else
-+ vpath="$ZORBA_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-+ if test -d "$vpath/lib"; then
-+ ZORBA_PATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ ZORBA_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$ZORBA_PATH" in
-+ /*) ;;
-+ * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
--XSLTPROC=$ac_cv_path_XSLTPROC
--
--if test -n "$XSLTPROC"; then
-- echo "$as_me:$LINENO: result: $XSLTPROC" >&5
--echo "${ECHO_T}$XSLTPROC" >&6
-+ ;;
-+ /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ elif test -d "$vpath"; then
-+ ZORBA_LIBPATH=$vpath
-+ ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
- else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
-+ case "$ZORBA_LIBPATH" in
-+ /*) ;;
-+ * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
--
--
--: ${LIBEXSLT_PATH=$LIBXSLT_PATH}
--if test "$with_libexslt" != "no"; then
-- case "$with_libexslt" in
-- yes | "" ) ;;
-- * ) LIBEXSLT_PATH=$with_libexslt ;;
-+ ;;
-+ /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
- esac
-- if test -d "$LIBEXSLT_PATH"; then
-- in_path=" in $LIBEXSLT_PATH"
-- if test -z "$LIBEXSLT_INCLUDE" -a -d "$LIBEXSLT_PATH/include"; then
-- LIBEXSLT_INCLUDE="-I$LIBEXSLT_PATH/include"
- fi
-- if test -n "$LIBEXSLT_LIBPATH"; then
-- :
-- elif test -d "$LIBEXSLT_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
-+ fi
-+ ZORBA_CONFIG="$ZORBA_PATH/bin/zorba-config"
-+ if test -x "$ZORBA_CONFIG"; then
-+ ZORBA_PATH=`$ZORBA_CONFIG --prefix`
-+ : ${ZORBA_INCLUDE=`$ZORBA_CONFIG --cppflags`}
-+ fi
-+ if test -d "$ZORBA_PATH"; then
-+ in_path=" in $ZORBA_PATH"
-+ : ${ZORBA_INCLUDE=-I$ZORBA_PATH/include}
-+ : ${ZORBA_LIBPATH=$ZORBA_PATH/lib}
- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $LIBEXSLT_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ in_path=''
- fi
-- elif test -d "$LIBEXSLT_PATH/lib"; then
-+ if test -x "$ZORBA_CONFIG"; then
-+ ZORBA_LIBS=`$ZORBA_CONFIG --libs`
-+ else
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $LIBEXSLT_PATH/lib; do
-+ for x in $ZORBA_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}"
-+ ZORBA_LIBPATH_="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $LIBEXSLT_PATH/lib; do
-+ for x in $ZORBA_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- LIBEXSLT_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-+ ZORBA_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- LIBEXSLT_LIBS="$LIBEXSLT_LIBPATH -lexslt "
-- else
-- LIBEXSLT_INCLUDE=""
-- LIBEXSLT_LIBS="-lexslt "
-- in_path=
-+ ZORBA_LIBS="$ZORBA_LIBPATH_ -lzorba_simplestore"
- fi
-- echo "$as_me:$LINENO: checking for libexslt$in_path" >&5
--echo $ECHO_N "checking for libexslt$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_libexslt+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for Zorba$in_path" >&5
-+echo $ECHO_N "checking for Zorba$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_zorba+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE $orig_CPPFLAGS"
-- LIBS="$LIBEXSLT_LIBS $LIBXSLT_LIBS $LIBXML_LIBS $Z_LIBS $orig_LIBS"
-+ CPPFLAGS="$ZORBA_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$ZORBA_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <libexslt/exslt.h>
-+#include <zorba/zorba.h>
- int
- main ()
- {
--exsltRegisterAll()
-+zorba::Version v = zorba::Zorba::version();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_libexslt=yes
-+ ncbi_cv_lib_zorba=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_libexslt=no
-+ ncbi_cv_lib_zorba=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_libexslt" >&5
--echo "${ECHO_T}$ncbi_cv_lib_libexslt" >&6
-- if test "$ncbi_cv_lib_libexslt" = "no"; then
-- if test "${with_libexslt:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-libexslt explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-libexslt explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_zorba" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_zorba" >&6; }
-+ if test $ncbi_cv_lib_zorba = yes; then
-+ if test -x "$ZORBA_CONFIG"; then
-+ ZORBA_STATIC_LIBS=`$ZORBA_CONFIG --static-libs`
-+ elif test -f "$ZORBA_LIBPATH/libzorba_simplestore-static.a"; then
-+ ZORBA_STATIC_LIBS="-L$ZORBA_LIBPATH -lzorba_simplestore-static $XERCES_STATIC_LIBS $ICU_STATIC_LIBS $LIBXSLT_STATIC_LIBS $LIBXML_STATIC_LIBS"
-+ else
-+ ZORBA_STATIC_LIBS=$ZORBA_LIBS
-+ fi
-+ else
-+ if test "${with_zorba:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-zorba explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-zorba explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_libexslt" = "no"; then
-- LIBEXSLT_PATH="No_LIBEXSLT"
-- LIBEXSLT_INCLUDE=
-- LIBEXSLT_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}LIBEXSLT"; WithPackagesSep=" "
-- LIBEXSLT_INCLUDE="$LIBXSLT_INCLUDE $LIBEXSLT_INCLUDE"
-+if test "$with_zorba" != no; then
-+ WithPackages="$WithPackages${WithPackagesSep}Zorba"; WithPackagesSep=" "
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBEXSLT 1
-+#define HAVE_ZORBA 1
- _ACEOF
-
-- fi
--
--
--
--
--# XXX - they might be in different directories in some setups
--if test -f "${LIBXML_LIBPATH_}/libexslt-static.a"; then
-- LIBEXSLT_STATIC_LIBS="-L${LIBXML_LIBPATH_} -lexslt-static"
- else
-- LIBEXSLT_STATIC_LIBS=${LIBEXSLT_LIBS}
-+ ZORBA_INCLUDE=
-+ ZORBA_LIBS=
-+ ZORBA_STATIC_LIBS=
- fi
-
--: ${XERCES_PATH=$NCBI/xerces}
--if test "$with_xerces" != no; then
-- if test "${with_xerces-yes}" != yes; then
-- XERCES_PATH=$with_xerces
-- fi
-- if test -d "$XERCES_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XERCES_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$XERCES_PATH" in
-- /*) ;;
-- * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-+### SQLite
-+case "$with_sqlite3" in
-+ yes | '' ) ;;
-+ * ) SQLITE3_PATH=$with_sqlite3 ;;
- esac
-- fi
-- vpath="$XERCES_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-- if test -d "$vpath/lib"; then
-- XERCES_PATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+
-+if test -d "$SQLITE3_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $SQLITE3_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
-+ /.*) ncbi_fix_dir_tmp2=`cd $SQLITE3_PATH && $smart_pwd 2>/dev/null`
- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XERCES_PATH=$ncbi_fix_dir_tmp2
-+ SQLITE3_PATH=$ncbi_fix_dir_tmp2
- else
-- case "$XERCES_PATH" in
-+ case "$SQLITE3_PATH" in
- /*) ;;
-- * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-+ * ) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
- ;;
-- /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- elif test -d "$vpath"; then
-- : ${XERCES_LIBPATH=$vpath}
-- ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XERCES_LIBPATH=$ncbi_fix_dir_tmp2
-- else
-- case "$XERCES_LIBPATH" in
-- /*) ;;
-- * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
-+ /*) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
-- ;;
-- /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-- else
-- vpath="$XERCES_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-- if test -d "$vpath/lib"; then
-- XERCES_PATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $XERCES_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XERCES_PATH=$ncbi_fix_dir_tmp2
-+if test -d "$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib"; then
-+ SQLITE3_LIBDIR=$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib
-+elif test -d $SQLITE3_PATH/lib${bit64_sfx}; then
-+ SQLITE3_LIBDIR=$SQLITE3_PATH/lib${bit64_sfx}
- else
-- case "$XERCES_PATH" in
-- /*) ;;
-- * ) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ SQLITE3_LIBDIR=$SQLITE3_PATH/lib
- fi
-- ;;
-- /*) XERCES_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- elif test -d "$vpath"; then
-- XERCES_LIBPATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $XERCES_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XERCES_LIBPATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XERCES_LIBPATH=$ncbi_fix_dir_tmp2
-+ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $SQLITE3_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
- else
-- case "$XERCES_LIBPATH" in
-- /*) ;;
-- * ) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $SQLITE3_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- ;;
-- /*) XERCES_LIBPATH=$ncbi_fix_dir_tmp ;;
-+if test "$with_sqlite3" != "no"; then
-+ case "$with_sqlite3" in
-+ yes | "" ) ;;
-+ * ) SQLITE3_PATH=$with_sqlite3 ;;
- esac
-+ if test -d "$SQLITE3_PATH"; then
-+ in_path=" in $SQLITE3_PATH"
-+ if test -z "$SQLITE3_INCLUDE" -a -d "$SQLITE3_PATH/include"; then
-+ SQLITE3_INCLUDE="-I$SQLITE3_PATH/include"
- fi
-- fi
-- if test -d $XERCES_PATH; then
-- in_path=" in $XERCES_PATH"
-- : ${XERCES_INCLUDE=-I$XERCES_PATH/include}
-- : ${XERCES_LIBPATH=$XERCES_PATH/lib}
-+ if test -n "$SQLITE3_LIBPATH"; then
-+ :
-+ elif test -d "$SQLITE3_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $SQLITE3_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
- else
-- in_path=''
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $SQLITE3_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-+ elif test -d "$SQLITE3_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $XERCES_LIBPATH; do
-+ for x in $SQLITE3_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- XERCES_LIBPATH_="${ncbi_rp_L_flags}"
-+ SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $XERCES_LIBPATH; do
-+ for x in $SQLITE3_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- XERCES_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- XERCES_LIBS="$XERCES_LIBPATH_ -lxerces-c"
-- echo "$as_me:$LINENO: checking for Xerces-C++$in_path" >&5
--echo $ECHO_N "checking for Xerces-C++$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_xerces_c+set}" = set; then
-+ fi
-+ SQLITE3_LIBS="$SQLITE3_LIBPATH -lsqlite3 "
-+ else
-+ SQLITE3_INCLUDE=""
-+ SQLITE3_LIBS="-lsqlite3 "
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for libsqlite3$in_path" >&5
-+echo $ECHO_N "checking for libsqlite3$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_sqlite3+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$XERCES_INCLUDE $orig_CPPFLAGS"
-- LIBS="$XERCES_LIBS $ICU_LIBS $orig_LIBS"
-+ CPPFLAGS=" $SQLITE3_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$SQLITE3_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <xercesc/dom/DOM.hpp>
-+#include <sqlite3.h>
- int
- main ()
- {
--xercesc::DOMImplementation* impl
-- = xercesc::DOMImplementationRegistry::getDOMImplementation
-- (xercesc::XMLString::transcode("XML 1.0"));
-+sqlite3_pcache_methods m;
-+ int status = sqlite3_config(SQLITE_CONFIG_GETPCACHE, &m);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_xerces_c=yes
-+ ncbi_cv_lib_sqlite3=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_xerces_c=no
-+ ncbi_cv_lib_sqlite3=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_xerces_c" >&5
--echo "${ECHO_T}$ncbi_cv_lib_xerces_c" >&6
-- if test $ncbi_cv_lib_xerces_c = yes; then
-- if test -f "$XERCES_LIBPATH/libxerces-c-static.a"; then
-- XERCES_STATIC_LIBS="-L$XERCES_LIBPATH -lxerces-c-static $CURL_LIBS"
-- else
-- XERCES_STATIC_LIBS=$XERCES_LIBS
-- fi
-- else
-- if test "${with_xerces:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-xerces explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-xerces explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sqlite3" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sqlite3" >&6; }
-+ if test "$ncbi_cv_lib_sqlite3" = "no"; then
-+ if test "${with_sqlite3:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sqlite3 explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sqlite3 explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
--if test "$with_xerces" != no; then
-- WithPackages="$WithPackages${WithPackagesSep}Xerces"; WithPackagesSep=" "
-+ if test "$with_sqlite3" = "no"; then
-+ SQLITE3_PATH="No_SQLITE3"
-+ SQLITE3_INCLUDE=
-+ SQLITE3_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}SQLITE3"; WithPackagesSep=" "
-+ SQLITE3_INCLUDE=" $SQLITE3_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_XERCES 1
-+#define HAVE_LIBSQLITE3 1
- _ACEOF
-
--else
-- XERCES_INCLUDE=
-- XERCES_LIBS=
-- XERCES_STATIC_LIBS=
- fi
-
--: ${XALAN_PATH=$NCBI/xalan}
--if test "$with_xalan" != no; then
-- if test "${with_xalan-yes}" != yes; then
-- XALAN_PATH=$with_xalan
-+
-+
-+if test -n "$SQLITE3_LIBS"; then
-+ CPPFLAGS="$SQLITE3_INCLUDE $orig_CPPFLAGS"
-+ if test "${ac_cv_header_sqlite3async_h+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
-+echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6; }
-+if test "${ac_cv_header_sqlite3async_h+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
- fi
-- if test -d "$XALAN_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XALAN_PATH=$ncbi_fix_dir_tmp2
-+{ echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
-+echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6; }
- else
-- case "$XALAN_PATH" in
-- /*) ;;
-- * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-+ # Is the header compilable?
-+{ echo "$as_me:$LINENO: checking sqlite3async.h usability" >&5
-+echo $ECHO_N "checking sqlite3async.h usability... $ECHO_C" >&6; }
-+cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+$ac_includes_default
-+#include <sqlite3async.h>
-+_ACEOF
-+rm -f conftest.$ac_objext
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
- esac
-- fi
-- vpath="$XALAN_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-- if test -d "$vpath/lib"; then
-- XALAN_PATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XALAN_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$XALAN_PATH" in
-- /*) ;;
-- * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } &&
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
- esac
-- fi
-- ;;
-- /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest.$ac_objext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
- esac
-- elif test -d "$vpath"; then
-- : ${XALAN_LIBPATH=$vpath}
-- ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XALAN_LIBPATH=$ncbi_fix_dir_tmp2
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ac_header_compiler=yes
- else
-- case "$XALAN_LIBPATH" in
-- /*) ;;
-- * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ac_header_compiler=no
- fi
-- ;;
-- /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
-+
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-+echo "${ECHO_T}$ac_header_compiler" >&6; }
-+
-+# Is the header present?
-+{ echo "$as_me:$LINENO: checking sqlite3async.h presence" >&5
-+echo $ECHO_N "checking sqlite3async.h presence... $ECHO_C" >&6; }
-+cat >conftest.$ac_ext <<_ACEOF
-+/* confdefs.h. */
-+_ACEOF
-+cat confdefs.h >>conftest.$ac_ext
-+cat >>conftest.$ac_ext <<_ACEOF
-+/* end confdefs.h. */
-+#include <sqlite3async.h>
-+_ACEOF
-+if { (ac_try="$ac_cpp conftest.$ac_ext"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
- esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
-+ ac_status=$?
-+ grep -v '^ *+' conftest.er1 >conftest.err
-+ rm -f conftest.er1
-+ cat conftest.err >&5
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); } >/dev/null; then
-+ if test -s conftest.err; then
-+ ac_cpp_err=$ac_cxx_preproc_warn_flag
-+ ac_cpp_err=$ac_cpp_err$ac_cxx_werror_flag
- else
-- vpath="$XALAN_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}${mt_sfx}"
-- if test -d "$vpath/lib"; then
-- XALAN_PATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $XALAN_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XALAN_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$XALAN_PATH" in
-- /*) ;;
-- * ) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ ac_cpp_err=
- fi
-- ;;
-- /*) XALAN_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- elif test -d "$vpath"; then
-- XALAN_LIBPATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $XALAN_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $XALAN_LIBPATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- XALAN_LIBPATH=$ncbi_fix_dir_tmp2
- else
-- case "$XALAN_LIBPATH" in
-- /*) ;;
-- * ) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) XALAN_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-+ ac_cpp_err=yes
- fi
-- if test -d $XALAN_PATH; then
-- in_path=" in $XALAN_PATH"
-- : ${XALAN_INCLUDE=-I$XALAN_PATH/include}
-- : ${XALAN_LIBPATH=$XALAN_PATH/lib}
-+if test -z "$ac_cpp_err"; then
-+ ac_header_preproc=yes
- else
-- in_path=''
-+ echo "$as_me: failed program was:" >&5
-+sed 's/^/| /' conftest.$ac_ext >&5
-+
-+ ac_header_preproc=no
- fi
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $XALAN_LIBPATH; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- XALAN_LIBPATH_="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $XALAN_LIBPATH; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- XALAN_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+
-+rm -f conftest.err conftest.$ac_ext
-+{ echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-+echo "${ECHO_T}$ac_header_preproc" >&6; }
-+
-+# So? What about this header?
-+case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-+ yes:no: )
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&5
-+echo "$as_me: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the compiler's result" >&5
-+echo "$as_me: WARNING: sqlite3async.h: proceeding with the compiler's result" >&2;}
-+ ac_header_preproc=yes
-+ ;;
-+ no:yes:* )
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: present but cannot be compiled" >&5
-+echo "$as_me: WARNING: sqlite3async.h: present but cannot be compiled" >&2;}
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&5
-+echo "$as_me: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&2;}
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: see the Autoconf documentation" >&5
-+echo "$as_me: WARNING: sqlite3async.h: see the Autoconf documentation" >&2;}
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&5
-+echo "$as_me: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&2;}
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&5
-+echo "$as_me: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&2;}
-+ { echo "$as_me:$LINENO: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&5
-+echo "$as_me: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&2;}
-+ ( cat <<\_ASBOX
-+## ---------------------------------------- ##
-+## Report this to cpp-core@ncbi.nlm.nih.gov ##
-+## ---------------------------------------- ##
-+_ASBOX
-+ ) | sed "s/^/$as_me: WARNING: /" >&2
-+ ;;
-+esac
-+{ echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
-+echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6; }
-+if test "${ac_cv_header_sqlite3async_h+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ ac_cv_header_sqlite3async_h=$ac_header_preproc
- fi
-- XALAN_LIBS="$XALAN_LIBPATH_ -lxalan-c -lxalanMsg"
-- echo "$as_me:$LINENO: checking for Xalan-C++$in_path" >&5
--echo $ECHO_N "checking for Xalan-C++$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_xalan_c+set}" = set; then
-+{ echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
-+echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6; }
-+
-+fi
-+if test $ac_cv_header_sqlite3async_h = yes; then
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_SQLITE3ASYNC_H 1
-+_ACEOF
-+
-+ WithPackages="$WithPackages${WithPackagesSep}SQLITE3ASYNC"; WithPackagesSep=" "
-+fi
-+
-+
-+ LIBS="$SQLITE3_LIBS $orig_LIBS"
-+
-+for ac_func in sqlite3_unlock_notify
-+do
-+as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
-+{ echo "$as_me:$LINENO: checking for $ac_func" >&5
-+echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6; }
-+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$XALAN_INCLUDE $XERCES_INCLUDE $orig_CPPFLAGS"
-- LIBS="$XALAN_LIBS $XERCES_LIBS $ICU_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <xalanc/XalanTransformer/XalanTransformer.hpp>
-+/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
-+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
-+#define $ac_func innocuous_$ac_func
-+
-+/* System header to define __stub macros and hopefully few prototypes,
-+ which can conflict with char $ac_func (); below.
-+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-+ <limits.h> exists even on freestanding compilers. */
-+
-+#ifdef __STDC__
-+# include <limits.h>
-+#else
-+# include <assert.h>
-+#endif
-+
-+#undef $ac_func
-+
-+/* Override any GCC internal prototype to avoid an error.
-+ Use char because int might match the return type of a GCC
-+ builtin and then its argument prototype would still apply. */
-+#ifdef __cplusplus
-+extern "C"
-+#endif
-+char $ac_func ();
-+/* The GNU C library defines this for functions which it implements
-+ to always fail with ENOSYS. Some functions are actually named
-+ something starting with __ and the normal name is an alias. */
-+#if defined __stub_$ac_func || defined __stub___$ac_func
-+choke me
-+#endif
-+
- int
- main ()
- {
--xalanc::XalanTransformer::initialize();
-+return $ac_func ();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_xalan_c=yes
-+ eval "$as_ac_var=yes"
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_xalan_c=no
-+ eval "$as_ac_var=no"
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_xalan_c" >&5
--echo "${ECHO_T}$ncbi_cv_lib_xalan_c" >&6
-- if test $ncbi_cv_lib_xalan_c = yes; then
-- if test -f "$XALAN_LIBPATH/libxalan-c-static.a"; then
-- XALAN_STATIC_LIBS="-L$XALAN_LIBPATH -lxalan-c-static -lxalanMsg-static"
-- else
-- XALAN_STATIC_LIBS=$XALAN_LIBS
-- fi
-- else
-- if test "${with_xalan:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-xalan explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-xalan explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
--fi
--if test "$with_xalan" != no; then
-- WithPackages="$WithPackages${WithPackagesSep}Xalan"; WithPackagesSep=" "
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_XALAN 1
-+ac_res=`eval echo '${'$as_ac_var'}'`
-+ { echo "$as_me:$LINENO: result: $ac_res" >&5
-+echo "${ECHO_T}$ac_res" >&6; }
-+if test `eval echo '${'$as_ac_var'}'` = yes; then
-+ cat >>confdefs.h <<_ACEOF
-+#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
- _ACEOF
-
--else
-- XALAN_INCLUDE=
-- XALAN_LIBS=
-- XALAN_STATIC_LIBS=
- fi
-+done
-
--test -d SunWS_cache && rm -r SunWS_cache
--
--: ${ZORBA_PATH=$NCBI/zorba}
--if test "$with_zorba" != no; then
-- if test "${with_zorba-yes}" != yes; then
-- ZORBA_PATH=$with_zorba
-- fi
-- if test -d "$ZORBA_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- ZORBA_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$ZORBA_PATH" in
-- /*) ;;
-- * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- vpath="$ZORBA_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-- if test -d "$vpath/lib"; then
-- ZORBA_PATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- ZORBA_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$ZORBA_PATH" in
-- /*) ;;
-- * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- elif test -d "$vpath"; then
-- : ${ZORBA_LIBPATH=$vpath}
-- ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
-- else
-- case "$ZORBA_LIBPATH" in
-- /*) ;;
-- * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-- else
-- vpath="$ZORBA_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}"
-- if test -d "$vpath/lib"; then
-- ZORBA_PATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $ZORBA_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- ZORBA_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$ZORBA_PATH" in
-- /*) ;;
-- * ) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-- esac
- fi
-- ;;
-- /*) ZORBA_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- elif test -d "$vpath"; then
-- ZORBA_LIBPATH=$vpath
-- ncbi_fix_dir_tmp=`if cd $ZORBA_LIBPATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $ZORBA_LIBPATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- ZORBA_LIBPATH=$ncbi_fix_dir_tmp2
-+if test -n "$SQLITE3_LIBS" -a -f "$SQLITE3_LIBDIR/libsqlite3-static.a"; then
-+ SQLITE3_STATIC_LIBS="-L$SQLITE3_LIBDIR -lsqlite3-static"
- else
-- case "$ZORBA_LIBPATH" in
-- /*) ;;
-- * ) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
-- esac
-+ SQLITE3_STATIC_LIBS=$SQLITE3_LIBS
- fi
-- ;;
-- /*) ZORBA_LIBPATH=$ncbi_fix_dir_tmp ;;
-+
-+
-+### OEChem
-+# somewhat kludgish, as we now wanto to add in oeiupac and oedepict,
-+# which depend on oechem....
-+if test "$with_oechem" != "no"; then
-+ case "$with_oechem" in
-+ yes | "" ) ;;
-+ * ) OECHEM_PATH=$with_oechem ;;
- esac
-+ if test -d "$OECHEM_PATH"; then
-+ in_path=" in $OECHEM_PATH"
-+ if test -z "$OECHEM_INCLUDE" -a -d "$OECHEM_PATH/include"; then
-+ OECHEM_INCLUDE="-I$OECHEM_PATH/include"
- fi
-- fi
-- ZORBA_CONFIG="$ZORBA_PATH/bin/zorba-config"
-- if test -x "$ZORBA_CONFIG"; then
-- ZORBA_PATH=`$ZORBA_CONFIG --prefix`
-- : ${ZORBA_INCLUDE=`$ZORBA_CONFIG --cppflags`}
-- fi
-- if test -d $ZORBA_PATH; then
-- in_path=" in $ZORBA_PATH"
-- : ${ZORBA_INCLUDE=-I$ZORBA_PATH/include}
-- : ${ZORBA_LIBPATH=$ZORBA_PATH/lib}
-+ if test -n "$OECHEM_LIBPATH"; then
-+ :
-+ elif test -d "$OECHEM_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $OECHEM_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ OECHEM_LIBPATH="${ncbi_rp_L_flags}"
- else
-- in_path=''
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $OECHEM_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- if test -x "$ZORBA_CONFIG"; then
-- ZORBA_LIBS=`$ZORBA_CONFIG --libs`
-- else
-+ elif test -d "$OECHEM_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $ZORBA_LIBPATH; do
-+ for x in $OECHEM_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- ZORBA_LIBPATH_="${ncbi_rp_L_flags}"
-+ OECHEM_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $ZORBA_LIBPATH; do
-+ for x in $OECHEM_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- ZORBA_LIBPATH_="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- ZORBA_LIBS="$ZORBA_LIBPATH_ -lzorba_simplestore"
- fi
-- echo "$as_me:$LINENO: checking for Zorba$in_path" >&5
--echo $ECHO_N "checking for Zorba$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_zorba+set}" = set; then
-+ OECHEM_LIBS="$OECHEM_LIBPATH -loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
-+ else
-+ OECHEM_INCLUDE=""
-+ OECHEM_LIBS="-loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for liboechem$in_path" >&5
-+echo $ECHO_N "checking for liboechem$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_oechem+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$ZORBA_INCLUDE $orig_CPPFLAGS"
-- LIBS="$ZORBA_LIBS $orig_LIBS"
-+ CPPFLAGS=" $OECHEM_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$OECHEM_LIBS $NETWORK_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <zorba/zorba.h>
-+#include <oechem.h>
- int
- main ()
- {
--zorba::Version v = zorba::Zorba::version();
-+OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_zorba=yes
-+ ncbi_cv_lib_oechem=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_zorba=no
-+ ncbi_cv_lib_oechem=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_zorba" >&5
--echo "${ECHO_T}$ncbi_cv_lib_zorba" >&6
-- if test $ncbi_cv_lib_zorba = yes; then
-- if test -x "$ZORBA_CONFIG"; then
-- ZORBA_STATIC_LIBS=`$ZORBA_CONFIG --static-libs`
-- elif test -f "$ZORBA_LIBPATH/libzorba_simplestore-static.a"; then
-- ZORBA_STATIC_LIBS="-L$ZORBA_LIBPATH -lzorba_simplestore-static $XERCES_STATIC_LIBS $ICU_STATIC_LIBS $LIBXSLT_STATIC_LIBS $LIBXML_STATIC_LIBS"
-- else
-- ZORBA_STATIC_LIBS=$ZORBA_LIBS
-- fi
-- else
-- if test "${with_zorba:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-zorba explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-zorba explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_oechem" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_oechem" >&6; }
-+ if test "$ncbi_cv_lib_oechem" = "no"; then
-+ if test "${with_oechem:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-oechem explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-oechem explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
--if test "$with_zorba" != no; then
-- WithPackages="$WithPackages${WithPackagesSep}Zorba"; WithPackagesSep=" "
-+ if test "$with_oechem" = "no"; then
-+ OECHEM_PATH="No_OECHEM"
-+ OECHEM_INCLUDE=
-+ OECHEM_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}OECHEM"; WithPackagesSep=" "
-+ OECHEM_INCLUDE=" $OECHEM_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_ZORBA 1
-+#define HAVE_LIBOECHEM 1
- _ACEOF
-
--else
-- ZORBA_INCLUDE=
-- ZORBA_LIBS=
-- ZORBA_STATIC_LIBS=
- fi
-
--### SQLite
--case "$with_sqlite3" in
-- yes | '' ) : ${SQLITE3_PATH=$NCBI/sqlite3} ;;
-- * ) SQLITE3_PATH=$with_sqlite3 ;;
--esac
-
--if test -d "$SQLITE3_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $SQLITE3_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $SQLITE3_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- SQLITE3_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$SQLITE3_PATH" in
-- /*) ;;
-- * ) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-+
-+if test -n "$OECHEM_LIBS"; then
-+ OECHEM_LIBS=`echo $OECHEM_LIBS | sed -e 's/-loechem \(.*-loechem .*\)/\1/'`
- fi
-- ;;
-- /*) SQLITE3_PATH=$ncbi_fix_dir_tmp ;;
-+test -d SunWS_cache && rm -r SunWS_cache
-+
-+
-+### Sun/Univa Grid Engine
-+case "$with_sge" in
-+ yes | "" ) ;;
-+ * ) SGE_PATH=$with_sge ;;
- esac
-+if test -d "$SGE_PATH" -a -z "$SGE_LIBPATH"; then
-+ case "$host:$NCBI_PLATFORM_BITS" in
-+ i?86-*-darwin* ) SGE_PLATFORMS='darwin-x86' ;;
-+ i?86-*-linux* ) SGE_PLATFORMS='lx24-x86 lx-x86' ;;
-+ i?86-*-solaris*:32 ) SGE_PLATFORMS='sol-x86' ;;
-+ i?86-*-solaris*:64 ) SGE_PLATFORMS='sol-amd64' ;;
-+ powerpc-*-darwin* ) SGE_PLATFORMS='darwin-ppc' ;;
-+ sparc-*-solaris*:32 ) SGE_PLATFORMS='sol-sparc' ;;
-+ sparc-*-solaris*:64 ) SGE_PLATFORMS='sol-sparc64' ;;
-+ x86_64-*-linux* ) SGE_PLATFORMS='lx24-amd64 lx-amd64' ;;
-+ esac
-+ for x in $SGE_PLATFORMS; do
-+ if test -d "$SGE_PATH/lib/$x"; then
-+ SGE_LIBPATH="$SGE_PATH/lib/$x"
-+ break
- fi
--if test -d "$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib"; then
-- SQLITE3_LIBDIR=$SQLITE3_PATH/${compiler_pfx}${DEBUG_SFX}${MT_SFX}${bit64_sfx}/lib
--elif test -d $SQLITE3_PATH/lib${bit64_sfx}; then
-- SQLITE3_LIBDIR=$SQLITE3_PATH/lib${bit64_sfx}
--else
-- SQLITE3_LIBDIR=$SQLITE3_PATH/lib
--fi
-+ done
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SQLITE3_LIBDIR; do
-+ for x in $SGE_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
-+ SGE_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SQLITE3_LIBDIR; do
-+ for x in $SGE_LIBPATH; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
--if test "$with_sqlite3" != "no"; then
-- case "$with_sqlite3" in
-+fi
-+if test "$with_sge" != "no"; then
-+ case "$with_sge" in
- yes | "" ) ;;
-- * ) SQLITE3_PATH=$with_sqlite3 ;;
-+ * ) SGE_PATH=$with_sge ;;
- esac
-- if test -d "$SQLITE3_PATH"; then
-- in_path=" in $SQLITE3_PATH"
-- if test -z "$SQLITE3_INCLUDE" -a -d "$SQLITE3_PATH/include"; then
-- SQLITE3_INCLUDE="-I$SQLITE3_PATH/include"
-+ if test -d "$SGE_PATH"; then
-+ in_path=" in $SGE_PATH"
-+ if test -z "$SGE_INCLUDE" -a -d "$SGE_PATH/include"; then
-+ SGE_INCLUDE="-I$SGE_PATH/include"
- fi
-- if test -n "$SQLITE3_LIBPATH"; then
-+ if test -n "$SGE_LIBPATH"; then
- :
-- elif test -d "$SQLITE3_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$SGE_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SQLITE3_PATH/lib${bit64_sfx}; do
-+ for x in $SGE_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
-+ SGE_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SQLITE3_PATH/lib${bit64_sfx}; do
-+ for x in $SGE_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$SQLITE3_PATH/lib"; then
-+ elif test -d "$SGE_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SQLITE3_PATH/lib; do
-+ for x in $SGE_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- SQLITE3_LIBPATH="${ncbi_rp_L_flags}"
-+ SGE_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SQLITE3_PATH/lib; do
-+ for x in $SGE_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- SQLITE3_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- SQLITE3_LIBS="$SQLITE3_LIBPATH -lsqlite3 "
-+ SGE_LIBS="$SGE_LIBPATH -ldrmaa "
- else
-- SQLITE3_INCLUDE=""
-- SQLITE3_LIBS="-lsqlite3 "
-+ SGE_INCLUDE=""
-+ SGE_LIBS="-ldrmaa "
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libsqlite3$in_path" >&5
--echo $ECHO_N "checking for libsqlite3$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_sqlite3+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libdrmaa$in_path" >&5
-+echo $ECHO_N "checking for libdrmaa$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_sge+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $SQLITE3_INCLUDE $orig_CPPFLAGS"
-- LIBS="$SQLITE3_LIBS $orig_LIBS"
-+ CPPFLAGS=" $SGE_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$SGE_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <sqlite3.h>
-+#include <sys/types.h>
-+ #include <drmaa.h>
- int
- main ()
- {
--sqlite3_pcache_methods m;
-- int status = sqlite3_config(SQLITE_CONFIG_GETPCACHE, &m);
-+char buf[1024]; drmaa_init("SGE", buf, sizeof(buf));
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_lib_sqlite3=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_sqlite3=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sqlite3" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sqlite3" >&6
-- if test "$ncbi_cv_lib_sqlite3" = "no"; then
-- if test "${with_sqlite3:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sqlite3 explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sqlite3 explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- fi
-- if test "$with_sqlite3" = "no"; then
-- SQLITE3_PATH="No_SQLITE3"
-- SQLITE3_INCLUDE=
-- SQLITE3_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}SQLITE3"; WithPackagesSep=" "
-- SQLITE3_INCLUDE=" $SQLITE3_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBSQLITE3 1
--_ACEOF
--
-- fi
--
--
--
--if test -n "$SQLITE3_LIBS"; then
-- CPPFLAGS="$SQLITE3_INCLUDE $orig_CPPFLAGS"
-- if test "${ac_cv_header_sqlite3async_h+set}" = set; then
-- echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
--echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6
--if test "${ac_cv_header_sqlite3async_h+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--fi
--echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
--echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6
--else
-- # Is the header compilable?
--echo "$as_me:$LINENO: checking sqlite3async.h usability" >&5
--echo $ECHO_N "checking sqlite3async.h usability... $ECHO_C" >&6
--cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--$ac_includes_default
--#include <sqlite3async.h>
--_ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ac_header_compiler=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ac_header_compiler=no
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
--echo "${ECHO_T}$ac_header_compiler" >&6
--
--# Is the header present?
--echo "$as_me:$LINENO: checking sqlite3async.h presence" >&5
--echo $ECHO_N "checking sqlite3async.h presence... $ECHO_C" >&6
--cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <sqlite3async.h>
--_ACEOF
--if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
-- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } >/dev/null; then
-- if test -s conftest.err; then
-- ac_cpp_err=$ac_cxx_preproc_warn_flag
-- ac_cpp_err=$ac_cpp_err$ac_cxx_werror_flag
-- else
-- ac_cpp_err=
-- fi
--else
-- ac_cpp_err=yes
--fi
--if test -z "$ac_cpp_err"; then
-- ac_header_preproc=yes
-+ (exit $ac_status); }; } &&
-+ { ac_try='test -s conftest$ac_exeext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
-+ ac_status=$?
-+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
-+ (exit $ac_status); }; }; then
-+ ncbi_cv_lib_sge=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
-- ac_header_preproc=no
-+ ncbi_cv_lib_sge=no
- fi
--rm -f conftest.err conftest.$ac_ext
--echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
--echo "${ECHO_T}$ac_header_preproc" >&6
-
--# So? What about this header?
--case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in
-- yes:no: )
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&5
--echo "$as_me: WARNING: sqlite3async.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the compiler's result" >&5
--echo "$as_me: WARNING: sqlite3async.h: proceeding with the compiler's result" >&2;}
-- ac_header_preproc=yes
-- ;;
-- no:yes:* )
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: present but cannot be compiled" >&5
--echo "$as_me: WARNING: sqlite3async.h: present but cannot be compiled" >&2;}
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&5
--echo "$as_me: WARNING: sqlite3async.h: check for missing prerequisite headers?" >&2;}
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: see the Autoconf documentation" >&5
--echo "$as_me: WARNING: sqlite3async.h: see the Autoconf documentation" >&2;}
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&5
--echo "$as_me: WARNING: sqlite3async.h: section \"Present But Cannot Be Compiled\"" >&2;}
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&5
--echo "$as_me: WARNING: sqlite3async.h: proceeding with the preprocessor's result" >&2;}
-- { echo "$as_me:$LINENO: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&5
--echo "$as_me: WARNING: sqlite3async.h: in the future, the compiler will take precedence" >&2;}
-- (
-- cat <<\_ASBOX
--## ---------------------------------------- ##
--## Report this to cpp-core@ncbi.nlm.nih.gov ##
--## ---------------------------------------- ##
--_ASBOX
-- ) |
-- sed "s/^/$as_me: WARNING: /" >&2
-- ;;
--esac
--echo "$as_me:$LINENO: checking for sqlite3async.h" >&5
--echo $ECHO_N "checking for sqlite3async.h... $ECHO_C" >&6
--if test "${ac_cv_header_sqlite3async_h+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- ac_cv_header_sqlite3async_h=$ac_header_preproc
-+rm -f core conftest.err conftest.$ac_objext \
-+ conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ac_cv_header_sqlite3async_h" >&5
--echo "${ECHO_T}$ac_cv_header_sqlite3async_h" >&6
--
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_sge" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_sge" >&6; }
-+ if test "$ncbi_cv_lib_sge" = "no"; then
-+ if test "${with_sge:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-sge explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-sge explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
- fi
--if test $ac_cv_header_sqlite3async_h = yes; then
-+ fi
-+ fi
-+ if test "$with_sge" = "no"; then
-+ SGE_PATH="No_SGE"
-+ SGE_INCLUDE=
-+ SGE_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}SGE"; WithPackagesSep=" "
-+ SGE_INCLUDE=" $SGE_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_SQLITE3ASYNC_H 1
-+#define HAVE_LIBSGE 1
- _ACEOF
-
-- WithPackages="$WithPackages${WithPackagesSep}SQLITE3ASYNC"; WithPackagesSep=" "
- fi
-
-
-- LIBS="$SQLITE3_LIBS $orig_LIBS"
-
--for ac_func in sqlite3_unlock_notify
--do
--as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
--echo "$as_me:$LINENO: checking for $ac_func" >&5
--echo $ECHO_N "checking for $ac_func... $ECHO_C" >&6
--if eval "test \"\${$as_ac_var+set}\" = set"; then
-+
-+
-+### muParser
-+case "$with_muparser" in
-+ yes | '' ) ;;
-+ * ) MUPARSER_PATH=$with_muparser ;;
-+esac
-+
-+if test -d "$MUPARSER_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $MUPARSER_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $MUPARSER_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ MUPARSER_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$MUPARSER_PATH" in
-+ /*) ;;
-+ * ) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+fi
-+if test -d "$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-+ MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
-+elif test -d "$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-+ MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
-+fi
-+
-+if test "$with_muparser" != "no"; then
-+ case "$with_muparser" in
-+ yes | "" ) ;;
-+ * ) MUPARSER_PATH=$with_muparser ;;
-+ esac
-+ if test -d "$MUPARSER_PATH"; then
-+ in_path=" in $MUPARSER_PATH"
-+ if test -z "$MUPARSER_INCLUDE" -a -d "$MUPARSER_PATH/include"; then
-+ MUPARSER_INCLUDE="-I$MUPARSER_PATH/include"
-+ fi
-+ if test -n "$MUPARSER_LIBPATH"; then
-+ :
-+ elif test -d "$MUPARSER_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $MUPARSER_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $MUPARSER_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ elif test -d "$MUPARSER_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $MUPARSER_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $MUPARSER_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ fi
-+ MUPARSER_LIBS="$MUPARSER_LIBPATH -lmuparser "
-+ else
-+ MUPARSER_INCLUDE=""
-+ MUPARSER_LIBS="-lmuparser "
-+ in_path=
-+ fi
-+ { echo "$as_me:$LINENO: checking for libmuparser$in_path" >&5
-+echo $ECHO_N "checking for libmuparser$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_muparser+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-+ CPPFLAGS=" $MUPARSER_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$MUPARSER_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
-- For example, HP-UX 11i <limits.h> declares gettimeofday. */
--#define $ac_func innocuous_$ac_func
--
--/* System header to define __stub macros and hopefully few prototypes,
-- which can conflict with char $ac_func (); below.
-- Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
-- <limits.h> exists even on freestanding compilers. */
--
--#ifdef __STDC__
--# include <limits.h>
--#else
--# include <assert.h>
--#endif
--
--#undef $ac_func
--
--/* Override any gcc2 internal prototype to avoid an error. */
--#ifdef __cplusplus
--extern "C"
--{
--#endif
--/* We use char because int might match the return type of a gcc2
-- builtin and then its argument prototype would still apply. */
--char $ac_func ();
--/* The GNU C library defines this for functions which it implements
-- to always fail with ENOSYS. Some functions are actually named
-- something starting with __ and the normal name is an alias. */
--#if defined (__stub_$ac_func) || defined (__stub___$ac_func)
--choke me
--#else
--char (*f) () = $ac_func;
--#endif
--#ifdef __cplusplus
--}
--#endif
--
-+#include <muParser.h>
- int
- main ()
- {
--return f != $ac_func;
-+mu::Parser parser;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- eval "$as_ac_var=yes"
-+ ncbi_cv_lib_muparser=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--eval "$as_ac_var=no"
-+ ncbi_cv_lib_muparser=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_var'}'`" >&5
--echo "${ECHO_T}`eval echo '${'$as_ac_var'}'`" >&6
--if test `eval echo '${'$as_ac_var'}'` = yes; then
-- cat >>confdefs.h <<_ACEOF
--#define `echo "HAVE_$ac_func" | $as_tr_cpp` 1
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_muparser" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_muparser" >&6; }
-+ if test "$ncbi_cv_lib_muparser" = "no"; then
-+ if test "${with_muparser:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-muparser explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-muparser explicitly specified, but no usable version found." >&2;}
-+ { (exit 1); exit 1; }; }
-+ fi
-+ fi
-+ fi
-+ if test "$with_muparser" = "no"; then
-+ MUPARSER_PATH="No_MUPARSER"
-+ MUPARSER_INCLUDE=
-+ MUPARSER_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}MUPARSER"; WithPackagesSep=" "
-+ MUPARSER_INCLUDE=" $MUPARSER_INCLUDE"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBMUPARSER 1
- _ACEOF
-
- fi
--done
-
-+
-+
-+
-+
-+### hdf5
-+case "$with_hdf5" in
-+ yes | '' ) ;;
-+ * ) HDF5_PATH=$with_hdf5 ;;
-+esac
-+
-+if test -d "$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"; then
-+ HDF5_PATH=$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}
-+elif test -d "$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}"; then
-+ HDF5_PATH=$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}
- fi
--if test -n "$SQLITE3_LIBS" -a -f "$SQLITE3_LIBDIR/libsqlite3-static.a"; then
-- SQLITE3_STATIC_LIBS="-L$SQLITE3_LIBDIR -lsqlite3-static"
-+if test -d "$HDF5_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $HDF5_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $HDF5_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ HDF5_PATH=$ncbi_fix_dir_tmp2
- else
-- SQLITE3_STATIC_LIBS=$SQLITE3_LIBS
-+ case "$HDF5_PATH" in
-+ /*) ;;
-+ * ) HDF5_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) HDF5_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
-
--
--### OEChem
--# somewhat kludgish, as we now wanto to add in oeiupac and oedepict,
--# which depend on oechem....
--: ${OECHEM_PATH=$NCBI/oechem}
--if test "$with_oechem" != "no"; then
-- case "$with_oechem" in
-+if test "$with_hdf5" != "no"; then
-+ case "$with_hdf5" in
- yes | "" ) ;;
-- * ) OECHEM_PATH=$with_oechem ;;
-+ * ) HDF5_PATH=$with_hdf5 ;;
- esac
-- if test -d "$OECHEM_PATH"; then
-- in_path=" in $OECHEM_PATH"
-- if test -z "$OECHEM_INCLUDE" -a -d "$OECHEM_PATH/include"; then
-- OECHEM_INCLUDE="-I$OECHEM_PATH/include"
-+ if test -d "$HDF5_PATH"; then
-+ in_path=" in $HDF5_PATH"
-+ if test -z "$HDF5_INCLUDE" -a -d "$HDF5_PATH/include"; then
-+ HDF5_INCLUDE="-I$HDF5_PATH/include"
- fi
-- if test -n "$OECHEM_LIBPATH"; then
-+ if test -n "$HDF5_LIBPATH"; then
- :
-- elif test -d "$OECHEM_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$HDF5_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $OECHEM_PATH/lib${bit64_sfx}; do
-+ for x in $HDF5_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- OECHEM_LIBPATH="${ncbi_rp_L_flags}"
-+ HDF5_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $OECHEM_PATH/lib${bit64_sfx}; do
-+ for x in $HDF5_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$OECHEM_PATH/lib"; then
-+ elif test -d "$HDF5_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $OECHEM_PATH/lib; do
-+ for x in $HDF5_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- OECHEM_LIBPATH="${ncbi_rp_L_flags}"
-+ HDF5_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $OECHEM_PATH/lib; do
-+ for x in $HDF5_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- OECHEM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- OECHEM_LIBS="$OECHEM_LIBPATH -loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
-+ HDF5_LIBS="$HDF5_LIBPATH -lhdf5_cpp -lhdf5"
- else
-- OECHEM_INCLUDE=""
-- OECHEM_LIBS="-loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz"
-+ HDF5_INCLUDE=""
-+ HDF5_LIBS="-lhdf5_cpp -lhdf5"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for liboechem$in_path" >&5
--echo $ECHO_N "checking for liboechem$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_oechem+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libhdf5_cpp$in_path" >&5
-+echo $ECHO_N "checking for libhdf5_cpp$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_hdf5+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $OECHEM_INCLUDE $orig_CPPFLAGS"
-- LIBS="$OECHEM_LIBS $NETWORK_LIBS $orig_LIBS"
-+ CPPFLAGS=" $HDF5_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$HDF5_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <oechem.h>
-+#include <H5Cpp.h>
- int
- main ()
- {
--OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive();
-+H5::H5Library::open();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_oechem=yes
-+ ncbi_cv_lib_hdf5=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_oechem=no
-+ ncbi_cv_lib_hdf5=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_oechem" >&5
--echo "${ECHO_T}$ncbi_cv_lib_oechem" >&6
-- if test "$ncbi_cv_lib_oechem" = "no"; then
-- if test "${with_oechem:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-oechem explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-oechem explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_hdf5" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_hdf5" >&6; }
-+ if test "$ncbi_cv_lib_hdf5" = "no"; then
-+ if test "${with_hdf5:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-hdf5 explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-hdf5 explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_oechem" = "no"; then
-- OECHEM_PATH="No_OECHEM"
-- OECHEM_INCLUDE=
-- OECHEM_LIBS=
-+ if test "$with_hdf5" = "no"; then
-+ HDF5_PATH="No_HDF5"
-+ HDF5_INCLUDE=
-+ HDF5_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}OECHEM"; WithPackagesSep=" "
-- OECHEM_INCLUDE=" $OECHEM_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}HDF5"; WithPackagesSep=" "
-+ HDF5_INCLUDE=" $HDF5_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBOECHEM 1
-+#define HAVE_LIBHDF5 1
- _ACEOF
-
- fi
-
-
-
--if test -n "$OECHEM_LIBS"; then
-- OECHEM_LIBS=`echo $OECHEM_LIBS | sed -e 's/-loechem \(.*-loechem .*\)/\1/'`
--fi
--test -d SunWS_cache && rm -r SunWS_cache
-
-
--### Sun/Univa Grid Engine
--case "$with_sge" in
-- yes | "" ) ;;
-- * ) SGE_PATH=$with_sge ;;
--esac
--if test -d "$SGE_PATH" -a -z "$SGE_LIBPATH"; then
-- case "$host:$NCBI_PLATFORM_BITS" in
-- i?86-*-darwin* ) SGE_PLATFORMS='darwin-x86' ;;
-- i?86-*-linux* ) SGE_PLATFORMS='lx24-x86 lx-x86' ;;
-- i?86-*-solaris*:32 ) SGE_PLATFORMS='sol-x86' ;;
-- i?86-*-solaris*:64 ) SGE_PLATFORMS='sol-amd64' ;;
-- powerpc-*-darwin* ) SGE_PLATFORMS='darwin-ppc' ;;
-- sparc-*-solaris*:32 ) SGE_PLATFORMS='sol-sparc' ;;
-- sparc-*-solaris*:64 ) SGE_PLATFORMS='sol-sparc64' ;;
-- x86_64-*-linux* ) SGE_PLATFORMS='lx24-amd64 lx-amd64' ;;
-- esac
-- for x in $SGE_PLATFORMS; do
-- if test -d "$SGE_PATH/lib/$x"; then
-- SGE_LIBPATH="$SGE_PATH/lib/$x"
-- break
-- fi
-- done
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SGE_LIBPATH; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- SGE_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SGE_LIBPATH; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
--fi
--if test "$with_sge" != "no"; then
-- case "$with_sge" in
-+### Image libraries
-+# : ${JPEG_PATH=/usr/sfw}
-+# Grr... jpeglib.h isn't especially well-behaved.
-+if test "$with_jpeg" != "no"; then
-+ case "$with_jpeg" in
- yes | "" ) ;;
-- * ) SGE_PATH=$with_sge ;;
-+ * ) JPEG_PATH=$with_jpeg ;;
- esac
-- if test -d "$SGE_PATH"; then
-- in_path=" in $SGE_PATH"
-- if test -z "$SGE_INCLUDE" -a -d "$SGE_PATH/include"; then
-- SGE_INCLUDE="-I$SGE_PATH/include"
-+ if test -d "$JPEG_PATH"; then
-+ in_path=" in $JPEG_PATH"
-+ if test -z "$JPEG_INCLUDE" -a -d "$JPEG_PATH/include"; then
-+ JPEG_INCLUDE="-I$JPEG_PATH/include"
- fi
-- if test -n "$SGE_LIBPATH"; then
-+ if test -n "$JPEG_LIBPATH"; then
- :
-- elif test -d "$SGE_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$JPEG_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SGE_PATH/lib${bit64_sfx}; do
-+ for x in $JPEG_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- SGE_LIBPATH="${ncbi_rp_L_flags}"
-+ JPEG_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SGE_PATH/lib${bit64_sfx}; do
-+ for x in $JPEG_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$SGE_PATH/lib"; then
-+ elif test -d "$JPEG_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $SGE_PATH/lib; do
-+ for x in $JPEG_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- SGE_LIBPATH="${ncbi_rp_L_flags}"
-+ JPEG_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $SGE_PATH/lib; do
-+ for x in $JPEG_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- SGE_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- SGE_LIBS="$SGE_LIBPATH -ldrmaa "
-+ JPEG_LIBS="$JPEG_LIBPATH -ljpeg "
- else
-- SGE_INCLUDE=""
-- SGE_LIBS="-ldrmaa "
-+ JPEG_INCLUDE=""
-+ JPEG_LIBS="-ljpeg "
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libdrmaa$in_path" >&5
--echo $ECHO_N "checking for libdrmaa$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_sge+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libjpeg$in_path" >&5
-+echo $ECHO_N "checking for libjpeg$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_jpeg+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $SGE_INCLUDE $orig_CPPFLAGS"
-- LIBS="$SGE_LIBS $orig_LIBS"
-+ CPPFLAGS=" $JPEG_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$JPEG_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
-@@ -31964,67 +36915,86 @@
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
- #include <sys/types.h>
-- #include <drmaa.h>
-+ #include <stdio.h>
-+ extern "C" {
-+ #include <jpeglib.h>
-+ }
- int
- main ()
- {
--char buf[1024]; drmaa_init("SGE", buf, sizeof(buf));
-+struct jpeg_decompress_struct cinfo;
-+ struct jpeg_error_mgr jerr;
-+ cinfo.err = jpeg_std_error(&jerr);
-+
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_sge=yes
-+ ncbi_cv_lib_jpeg=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_sge=no
-+ ncbi_cv_lib_jpeg=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_sge" >&5
--echo "${ECHO_T}$ncbi_cv_lib_sge" >&6
-- if test "$ncbi_cv_lib_sge" = "no"; then
-- if test "${with_sge:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-sge explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-sge explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_jpeg" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_jpeg" >&6; }
-+ if test "$ncbi_cv_lib_jpeg" = "no"; then
-+ if test "${with_jpeg:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-jpeg explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-jpeg explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_sge" = "no"; then
-- SGE_PATH="No_SGE"
-- SGE_INCLUDE=
-- SGE_LIBS=
-+ if test "$with_jpeg" = "no"; then
-+ JPEG_PATH="No_JPEG"
-+ JPEG_INCLUDE=
-+ JPEG_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}SGE"; WithPackagesSep=" "
-- SGE_INCLUDE=" $SGE_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}JPEG"; WithPackagesSep=" "
-+ JPEG_INCLUDE=" $JPEG_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBSGE 1
-+#define HAVE_LIBJPEG 1
- _ACEOF
-
- fi
-@@ -32032,170 +37002,157 @@
-
-
-
--
--### muParser
--case "$with_muparser" in
-- yes | '' ) : ${MUPARSER_PATH=$NCBI/muParser} ;;
-- * ) MUPARSER_PATH=$with_muparser ;;
--esac
--
--if test -d "$MUPARSER_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $MUPARSER_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $MUPARSER_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- MUPARSER_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$MUPARSER_PATH" in
-- /*) ;;
-- * ) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) MUPARSER_PATH=$ncbi_fix_dir_tmp ;;
-- esac
--fi
--if test -d "$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-- MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
--elif test -d "$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-- MUPARSER_LIBPATH=-L$MUPARSER_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
--fi
--
--if test "$with_muparser" != "no"; then
-- case "$with_muparser" in
-+# : ${PNG_PATH=/usr/sfw}
-+if test "$with_png" != "no"; then
-+ case "$with_png" in
- yes | "" ) ;;
-- * ) MUPARSER_PATH=$with_muparser ;;
-+ * ) PNG_PATH=$with_png ;;
- esac
-- if test -d "$MUPARSER_PATH"; then
-- in_path=" in $MUPARSER_PATH"
-- if test -z "$MUPARSER_INCLUDE" -a -d "$MUPARSER_PATH/include"; then
-- MUPARSER_INCLUDE="-I$MUPARSER_PATH/include"
-+ if test -d "$PNG_PATH"; then
-+ in_path=" in $PNG_PATH"
-+ if test -z "$PNG_INCLUDE" -a -d "$PNG_PATH/include"; then
-+ PNG_INCLUDE="-I$PNG_PATH/include"
- fi
-- if test -n "$MUPARSER_LIBPATH"; then
-+ if test -n "$PNG_LIBPATH"; then
- :
-- elif test -d "$MUPARSER_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$PNG_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $MUPARSER_PATH/lib${bit64_sfx}; do
-+ for x in $PNG_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
-+ PNG_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $MUPARSER_PATH/lib${bit64_sfx}; do
-+ for x in $PNG_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$MUPARSER_PATH/lib"; then
-+ elif test -d "$PNG_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $MUPARSER_PATH/lib; do
-+ for x in $PNG_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- MUPARSER_LIBPATH="${ncbi_rp_L_flags}"
-+ PNG_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $MUPARSER_PATH/lib; do
-+ for x in $PNG_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- MUPARSER_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- MUPARSER_LIBS="$MUPARSER_LIBPATH -lmuparser "
-+ PNG_LIBS="$PNG_LIBPATH -lpng $Z_LIBS"
- else
-- MUPARSER_INCLUDE=""
-- MUPARSER_LIBS="-lmuparser "
-+ PNG_INCLUDE=""
-+ PNG_LIBS="-lpng $Z_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libmuparser$in_path" >&5
--echo $ECHO_N "checking for libmuparser$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_muparser+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libpng$in_path" >&5
-+echo $ECHO_N "checking for libpng$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_png+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $MUPARSER_INCLUDE $orig_CPPFLAGS"
-- LIBS="$MUPARSER_LIBS $orig_LIBS"
-+ CPPFLAGS="$Z_INCLUDE $PNG_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$PNG_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <muParser.h>
-+#include <png.h>
- int
- main ()
- {
--mu::Parser parser;
-+png_structp png_ptr
-+ = png_create_read_struct(PNG_LIBPNG_VER_STRING, NULL, NULL, NULL);
-+
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_muparser=yes
-+ ncbi_cv_lib_png=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_muparser=no
-+ ncbi_cv_lib_png=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_muparser" >&5
--echo "${ECHO_T}$ncbi_cv_lib_muparser" >&6
-- if test "$ncbi_cv_lib_muparser" = "no"; then
-- if test "${with_muparser:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-muparser explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-muparser explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_png" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_png" >&6; }
-+ if test "$ncbi_cv_lib_png" = "no"; then
-+ if test "${with_png:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-png explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-png explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_muparser" = "no"; then
-- MUPARSER_PATH="No_MUPARSER"
-- MUPARSER_INCLUDE=
-- MUPARSER_LIBS=
-+ if test "$with_png" = "no"; then
-+ PNG_PATH="No_PNG"
-+ PNG_INCLUDE=
-+ PNG_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}MUPARSER"; WithPackagesSep=" "
-- MUPARSER_INCLUDE=" $MUPARSER_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}PNG"; WithPackagesSep=" "
-+ PNG_INCLUDE="$Z_INCLUDE $PNG_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBMUPARSER 1
-+#define HAVE_LIBPNG 1
- _ACEOF
-
- fi
-@@ -32203,1627 +37160,1799 @@
-
-
-
--
--### hdf5
--case "$with_hdf5" in
-- yes | '' ) : ${HDF5_PATH=$NCBI/hdf5} ;;
-- * ) HDF5_PATH=$with_hdf5 ;;
--esac
--
--if test -d "$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}"; then
-- HDF5_PATH=$HDF5_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}
--elif test -d "$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}"; then
-- HDF5_PATH=$HDF5_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}
--fi
--if test -d "$HDF5_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $HDF5_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $HDF5_PATH && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- HDF5_PATH=$ncbi_fix_dir_tmp2
-- else
-- case "$HDF5_PATH" in
-- /*) ;;
-- * ) HDF5_PATH=$ncbi_fix_dir_tmp ;;
-- esac
-- fi
-- ;;
-- /*) HDF5_PATH=$ncbi_fix_dir_tmp ;;
-- esac
--fi
--
--if test "$with_hdf5" != "no"; then
-- case "$with_hdf5" in
-+# : ${TIFF_PATH=/usr/sfw}
-+if test "$with_tiff" != "no"; then
-+ case "$with_tiff" in
- yes | "" ) ;;
-- * ) HDF5_PATH=$with_hdf5 ;;
-+ * ) TIFF_PATH=$with_tiff ;;
- esac
-- if test -d "$HDF5_PATH"; then
-- in_path=" in $HDF5_PATH"
-- if test -z "$HDF5_INCLUDE" -a -d "$HDF5_PATH/include"; then
-- HDF5_INCLUDE="-I$HDF5_PATH/include"
-+ if test -d "$TIFF_PATH"; then
-+ in_path=" in $TIFF_PATH"
-+ if test -z "$TIFF_INCLUDE" -a -d "$TIFF_PATH/include"; then
-+ TIFF_INCLUDE="-I$TIFF_PATH/include"
- fi
-- if test -n "$HDF5_LIBPATH"; then
-+ if test -n "$TIFF_LIBPATH"; then
- :
-- elif test -d "$HDF5_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$TIFF_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $HDF5_PATH/lib${bit64_sfx}; do
-+ for x in $TIFF_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- HDF5_LIBPATH="${ncbi_rp_L_flags}"
-+ TIFF_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $HDF5_PATH/lib${bit64_sfx}; do
-+ for x in $TIFF_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$HDF5_PATH/lib"; then
-+ elif test -d "$TIFF_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $HDF5_PATH/lib; do
-+ for x in $TIFF_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- HDF5_LIBPATH="${ncbi_rp_L_flags}"
-+ TIFF_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $HDF5_PATH/lib; do
-+ for x in $TIFF_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- HDF5_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- HDF5_LIBS="$HDF5_LIBPATH -lhdf5_cpp -lhdf5"
-+ TIFF_LIBS="$TIFF_LIBPATH -ltiff $Z_LIBS"
- else
-- HDF5_INCLUDE=""
-- HDF5_LIBS="-lhdf5_cpp -lhdf5"
-+ TIFF_INCLUDE=""
-+ TIFF_LIBS="-ltiff $Z_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libhdf5_cpp$in_path" >&5
--echo $ECHO_N "checking for libhdf5_cpp$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_hdf5+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libtiff$in_path" >&5
-+echo $ECHO_N "checking for libtiff$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_tiff+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $HDF5_INCLUDE $orig_CPPFLAGS"
-- LIBS="$HDF5_LIBS $orig_LIBS"
-+ CPPFLAGS=" $TIFF_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$TIFF_LIBS $JPEG_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <H5Cpp.h>
-+#include <tiffio.h>
- int
- main ()
- {
--H5::H5Library::open();
-+TIFF* tiff = TIFFOpen("foo", "r");
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_hdf5=yes
-+ ncbi_cv_lib_tiff=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_hdf5=no
-+ ncbi_cv_lib_tiff=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_hdf5" >&5
--echo "${ECHO_T}$ncbi_cv_lib_hdf5" >&6
-- if test "$ncbi_cv_lib_hdf5" = "no"; then
-- if test "${with_hdf5:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-hdf5 explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-hdf5 explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_tiff" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_tiff" >&6; }
-+ if test "$ncbi_cv_lib_tiff" = "no"; then
-+ if test "${with_tiff:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-tiff explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-tiff explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_hdf5" = "no"; then
-- HDF5_PATH="No_HDF5"
-- HDF5_INCLUDE=
-- HDF5_LIBS=
-+ if test "$with_tiff" = "no"; then
-+ TIFF_PATH="No_TIFF"
-+ TIFF_INCLUDE=
-+ TIFF_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}HDF5"; WithPackagesSep=" "
-- HDF5_INCLUDE=" $HDF5_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}TIFF"; WithPackagesSep=" "
-+ TIFF_INCLUDE=" $TIFF_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBHDF5 1
-+#define HAVE_LIBTIFF 1
- _ACEOF
-
- fi
-
-
-
-+## etc.
-
--
--### Image libraries
--# : ${JPEG_PATH=/usr/sfw}
--# Grr... jpeglib.h isn't especially well-behaved.
--if test "$with_jpeg" != "no"; then
-- case "$with_jpeg" in
-+# Paths?
-+with_ungif=$with_gif
-+if test "$with_ungif" != "no"; then
-+ case "$with_ungif" in
- yes | "" ) ;;
-- * ) JPEG_PATH=$with_jpeg ;;
-+ * ) UNGIF_PATH=$with_ungif ;;
- esac
-- if test -d "$JPEG_PATH"; then
-- in_path=" in $JPEG_PATH"
-- if test -z "$JPEG_INCLUDE" -a -d "$JPEG_PATH/include"; then
-- JPEG_INCLUDE="-I$JPEG_PATH/include"
-+ if test -d "$UNGIF_PATH"; then
-+ in_path=" in $UNGIF_PATH"
-+ if test -z "$UNGIF_INCLUDE" -a -d "$UNGIF_PATH/include"; then
-+ UNGIF_INCLUDE="-I$UNGIF_PATH/include"
- fi
-- if test -n "$JPEG_LIBPATH"; then
-+ if test -n "$UNGIF_LIBPATH"; then
- :
-- elif test -d "$JPEG_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$UNGIF_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $JPEG_PATH/lib${bit64_sfx}; do
-+ for x in $UNGIF_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- JPEG_LIBPATH="${ncbi_rp_L_flags}"
-+ UNGIF_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $JPEG_PATH/lib${bit64_sfx}; do
-+ for x in $UNGIF_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$JPEG_PATH/lib"; then
-+ elif test -d "$UNGIF_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $JPEG_PATH/lib; do
-+ for x in $UNGIF_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- JPEG_LIBPATH="${ncbi_rp_L_flags}"
-+ UNGIF_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $JPEG_PATH/lib; do
-+ for x in $UNGIF_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- JPEG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- JPEG_LIBS="$JPEG_LIBPATH -ljpeg "
-+ UNGIF_LIBS="$UNGIF_LIBPATH -lungif $X_LIBS -lX11"
- else
-- JPEG_INCLUDE=""
-- JPEG_LIBS="-ljpeg "
-+ UNGIF_INCLUDE=""
-+ UNGIF_LIBS="-lungif $X_LIBS -lX11"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libjpeg$in_path" >&5
--echo $ECHO_N "checking for libjpeg$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_jpeg+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libungif$in_path" >&5
-+echo $ECHO_N "checking for libungif$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_ungif+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $JPEG_INCLUDE $orig_CPPFLAGS"
-- LIBS="$JPEG_LIBS $orig_LIBS"
-+ CPPFLAGS=" $UNGIF_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$UNGIF_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <sys/types.h>
-- #include <stdio.h>
- extern "C" {
-- #include <jpeglib.h>
-+ #include <gif_lib.h>
- }
- int
- main ()
- {
--struct jpeg_decompress_struct cinfo;
-- struct jpeg_error_mgr jerr;
-- cinfo.err = jpeg_std_error(&jerr);
--
-+GifFileType* fp = DGifOpenFileName("foo");
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_jpeg=yes
-+ ncbi_cv_lib_ungif=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_jpeg=no
-+ ncbi_cv_lib_ungif=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_jpeg" >&5
--echo "${ECHO_T}$ncbi_cv_lib_jpeg" >&6
-- if test "$ncbi_cv_lib_jpeg" = "no"; then
-- if test "${with_jpeg:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-jpeg explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-jpeg explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_ungif" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_ungif" >&6; }
-+ if test "$ncbi_cv_lib_ungif" = "no"; then
-+ if test "${with_ungif:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-ungif explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-ungif explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_jpeg" = "no"; then
-- JPEG_PATH="No_JPEG"
-- JPEG_INCLUDE=
-- JPEG_LIBS=
-+ if test "$with_ungif" = "no"; then
-+ UNGIF_PATH="No_UNGIF"
-+ UNGIF_INCLUDE=
-+ UNGIF_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}JPEG"; WithPackagesSep=" "
-- JPEG_INCLUDE=" $JPEG_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}UNGIF"; WithPackagesSep=" "
-+ UNGIF_INCLUDE=" $UNGIF_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBJPEG 1
-+#define HAVE_LIBUNGIF 1
- _ACEOF
-
- fi
-
-
-
--
--# : ${PNG_PATH=/usr/sfw}
--if test "$with_png" != "no"; then
-- case "$with_png" in
-+if test "$with_ungif" = "no"; then
-+ if test "$with_gif" != "no"; then
-+ case "$with_gif" in
- yes | "" ) ;;
-- * ) PNG_PATH=$with_png ;;
-+ * ) GIF_PATH=$with_gif ;;
- esac
-- if test -d "$PNG_PATH"; then
-- in_path=" in $PNG_PATH"
-- if test -z "$PNG_INCLUDE" -a -d "$PNG_PATH/include"; then
-- PNG_INCLUDE="-I$PNG_PATH/include"
-+ if test -d "$GIF_PATH"; then
-+ in_path=" in $GIF_PATH"
-+ if test -z "$GIF_INCLUDE" -a -d "$GIF_PATH/include"; then
-+ GIF_INCLUDE="-I$GIF_PATH/include"
- fi
-- if test -n "$PNG_LIBPATH"; then
-+ if test -n "$GIF_LIBPATH"; then
- :
-- elif test -d "$PNG_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$GIF_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $PNG_PATH/lib${bit64_sfx}; do
-+ for x in $GIF_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- PNG_LIBPATH="${ncbi_rp_L_flags}"
-+ GIF_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $PNG_PATH/lib${bit64_sfx}; do
-+ for x in $GIF_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$PNG_PATH/lib"; then
-+ elif test -d "$GIF_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $PNG_PATH/lib; do
-+ for x in $GIF_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- PNG_LIBPATH="${ncbi_rp_L_flags}"
-+ GIF_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $PNG_PATH/lib; do
-+ for x in $GIF_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- PNG_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- PNG_LIBS="$PNG_LIBPATH -lpng $Z_LIBS"
-+ GIF_LIBS="$GIF_LIBPATH -lgif $X_LIBS -lX11"
- else
-- PNG_INCLUDE=""
-- PNG_LIBS="-lpng $Z_LIBS"
-+ GIF_INCLUDE=""
-+ GIF_LIBS="-lgif $X_LIBS -lX11"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libpng$in_path" >&5
--echo $ECHO_N "checking for libpng$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_png+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libgif$in_path" >&5
-+echo $ECHO_N "checking for libgif$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_gif+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$Z_INCLUDE $PNG_INCLUDE $orig_CPPFLAGS"
-- LIBS="$PNG_LIBS $orig_LIBS"
-+ CPPFLAGS=" $GIF_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$GIF_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <png.h>
-+extern "C" {
-+ #include <gif_lib.h>
-+ }
- int
- main ()
- {
--png_structp png_ptr
-- = png_create_read_struct(PNG_LIBPNG_VER_STRING, NULL, NULL, NULL);
--
-+GifFileType* fp = DGifOpenFileName("foo");
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_png=yes
-+ ncbi_cv_lib_gif=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_png=no
-+ ncbi_cv_lib_gif=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_png" >&5
--echo "${ECHO_T}$ncbi_cv_lib_png" >&6
-- if test "$ncbi_cv_lib_png" = "no"; then
-- if test "${with_png:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-png explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-png explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gif" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_gif" >&6; }
-+ if test "$ncbi_cv_lib_gif" = "no"; then
-+ if test "${with_gif:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-gif explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-gif explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_png" = "no"; then
-- PNG_PATH="No_PNG"
-- PNG_INCLUDE=
-- PNG_LIBS=
-+ if test "$with_gif" = "no"; then
-+ GIF_PATH="No_GIF"
-+ GIF_INCLUDE=
-+ GIF_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}PNG"; WithPackagesSep=" "
-- PNG_INCLUDE="$Z_INCLUDE $PNG_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}GIF"; WithPackagesSep=" "
-+ GIF_INCLUDE=" $GIF_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBPNG 1
-+#define HAVE_LIBGIF 1
- _ACEOF
-
- fi
-
-
-
-+else
-
--# : ${TIFF_PATH=/usr/sfw}
--if test "$with_tiff" != "no"; then
-- case "$with_tiff" in
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBGIF 1
-+_ACEOF
-+
-+ GIF_INCLUDE=$UNGIF_INCLUDE
-+ GIF_LIBS=$UNGIF_LIBS
-+fi
-+
-+case "$x_libraries" in */*) : ${XPM_PATH=`dirname "$x_libraries"`} ;; esac
-+if test "$with_xpm" != "no"; then
-+ case "$with_xpm" in
- yes | "" ) ;;
-- * ) TIFF_PATH=$with_tiff ;;
-+ * ) XPM_PATH=$with_xpm ;;
- esac
-- if test -d "$TIFF_PATH"; then
-- in_path=" in $TIFF_PATH"
-- if test -z "$TIFF_INCLUDE" -a -d "$TIFF_PATH/include"; then
-- TIFF_INCLUDE="-I$TIFF_PATH/include"
-+ if test -d "$XPM_PATH"; then
-+ in_path=" in $XPM_PATH"
-+ if test -z "$XPM_INCLUDE" -a -d "$XPM_PATH/include"; then
-+ XPM_INCLUDE="-I$XPM_PATH/include"
- fi
-- if test -n "$TIFF_LIBPATH"; then
-+ if test -n "$XPM_LIBPATH"; then
- :
-- elif test -d "$TIFF_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$XPM_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $TIFF_PATH/lib${bit64_sfx}; do
-+ for x in $XPM_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- TIFF_LIBPATH="${ncbi_rp_L_flags}"
-+ XPM_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $TIFF_PATH/lib${bit64_sfx}; do
-+ for x in $XPM_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$TIFF_PATH/lib"; then
-+ elif test -d "$XPM_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $TIFF_PATH/lib; do
-+ for x in $XPM_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- TIFF_LIBPATH="${ncbi_rp_L_flags}"
-+ XPM_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $TIFF_PATH/lib; do
-+ for x in $XPM_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- TIFF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- TIFF_LIBS="$TIFF_LIBPATH -ltiff $Z_LIBS"
-+ XPM_LIBS="$XPM_LIBPATH -lXpm $X_LIBS -lX11"
- else
-- TIFF_INCLUDE=""
-- TIFF_LIBS="-ltiff $Z_LIBS"
-+ XPM_INCLUDE=""
-+ XPM_LIBS="-lXpm $X_LIBS -lX11"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libtiff$in_path" >&5
--echo $ECHO_N "checking for libtiff$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_tiff+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libXpm$in_path" >&5
-+echo $ECHO_N "checking for libXpm$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_xpm+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $TIFF_INCLUDE $orig_CPPFLAGS"
-- LIBS="$TIFF_LIBS $JPEG_LIBS $orig_LIBS"
-+ CPPFLAGS="$X_CFLAGS $XPM_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$XPM_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <tiffio.h>
-+#include <X11/xpm.h>
- int
- main ()
- {
--TIFF* tiff = TIFFOpen("foo", "r");
-+XpmImage image; XpmInfo info;
-+ XpmReadFileToXpmImage("foo", &image, &info);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_tiff=yes
-+ ncbi_cv_lib_xpm=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_tiff=no
-+ ncbi_cv_lib_xpm=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_tiff" >&5
--echo "${ECHO_T}$ncbi_cv_lib_tiff" >&6
-- if test "$ncbi_cv_lib_tiff" = "no"; then
-- if test "${with_tiff:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-tiff explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-tiff explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_xpm" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_xpm" >&6; }
-+ if test "$ncbi_cv_lib_xpm" = "no"; then
-+ if test "${with_xpm:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-xpm explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-xpm explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_tiff" = "no"; then
-- TIFF_PATH="No_TIFF"
-- TIFF_INCLUDE=
-- TIFF_LIBS=
-+ if test "$with_xpm" = "no"; then
-+ XPM_PATH="No_XPM"
-+ XPM_INCLUDE=
-+ XPM_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}TIFF"; WithPackagesSep=" "
-- TIFF_INCLUDE=" $TIFF_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}XPM"; WithPackagesSep=" "
-+ XPM_INCLUDE="$X_CFLAGS $XPM_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBTIFF 1
-+#define HAVE_LIBXPM 1
- _ACEOF
-
- fi
-
-
-
--## etc.
-+# The use of X_CFLAGS is probably redundant, but shouldn't hurt.
-
--# Paths?
--with_ungif=$with_gif
--if test "$with_ungif" != "no"; then
-- case "$with_ungif" in
-- yes | "" ) ;;
-- * ) UNGIF_PATH=$with_ungif ;;
-- esac
-- if test -d "$UNGIF_PATH"; then
-- in_path=" in $UNGIF_PATH"
-- if test -z "$UNGIF_INCLUDE" -a -d "$UNGIF_PATH/include"; then
-- UNGIF_INCLUDE="-I$UNGIF_PATH/include"
-- fi
-- if test -n "$UNGIF_LIBPATH"; then
-- :
-- elif test -d "$UNGIF_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $UNGIF_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-+## FreeType and FTGL
-+if test "$with_freetype" != "no" ; then
-+ : ${FREETYPE_BINPATH=$FREETYPE_PATH/bin}
-+ # Extract the first word of "freetype-config", so it can be a program name with args.
-+set dummy freetype-config; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_freetype_config+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ case $freetype_config in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_freetype_config="$freetype_config" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+as_dummy="$FREETYPE_BINPATH:$PATH"
-+for as_dir in $as_dummy
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_freetype_config="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
- done
-- UNGIF_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $UNGIF_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
- done
-- UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+IFS=$as_save_IFS
-+
-+ ;;
-+esac
- fi
-- elif test -d "$UNGIF_PATH/lib"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-+freetype_config=$ac_cv_path_freetype_config
-+if test -n "$freetype_config"; then
-+ { echo "$as_me:$LINENO: result: $freetype_config" >&5
-+echo "${ECHO_T}$freetype_config" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+fi
-+
-+
-+ if test -n "$freetype_config" ; then
-+ : ${FREETYPE_BINPATH=`dirname $freetype_config`}
-+ : ${FREETYPE_INCLUDE=`$freetype_config --cflags`}
-+ if test -z "${FREETYPE_LIBS+set}"; then
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $UNGIF_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- UNGIF_LIBPATH="${ncbi_rp_L_flags}"
-+ FREETYPE_LIBS=`$freetype_config --libs | sed -e "$no_usr_lib"`
- else
-+ FREETYPE_LIBS=
-+ ncbi_rp_L_sep=
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $UNGIF_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ for x in `$freetype_config --libs | sed -e "$no_usr_lib"`; do
-+ case "$x" in
-+ -L*)
-+ FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_L_sep}$x"
-+ x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
-+ ;;
-+ *)
-+ FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ ;;
-+ esac
-+ ncbi_rp_L_sep=" "
- done
-- UNGIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}"
- fi
- fi
-- UNGIF_LIBS="$UNGIF_LIBPATH -lungif $X_LIBS -lX11"
-- else
-- UNGIF_INCLUDE=""
-- UNGIF_LIBS="-lungif $X_LIBS -lX11"
-- in_path=
-+ case "$host_os:$bit64_sfx" in
-+ solaris*:64 )
-+ ftprefix=`$freetype_config --exec-prefix`
-+ if test -d "$ftprefix/lib/64"; then
-+ FREETYPE_LIBS=`echo $FREETYPE_LIBS \
-+ | sed -e "s,$ftprefix/lib ,$ftprefix/lib/64 ,g"`
- fi
-- echo "$as_me:$LINENO: checking for libungif$in_path" >&5
--echo $ECHO_N "checking for libungif$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_ungif+set}" = set; then
-+ ;;
-+ esac
-+ { echo "$as_me:$LINENO: checking whether FREETYPE_INCLUDE needs doctoring" >&5
-+echo $ECHO_N "checking whether FREETYPE_INCLUDE needs doctoring... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_freetype_fix_include+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $UNGIF_INCLUDE $orig_CPPFLAGS"
-- LIBS="$UNGIF_LIBS $orig_LIBS"
-+ CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--extern "C" {
-- #include <gif_lib.h>
-- }
-+#include <ft2build.h>
- int
- main ()
- {
--GifFileType* fp = DGifOpenFileName("foo");
-+
- ;
- return 0;
- }
- _ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+rm -f conftest.$ac_objext
-+if { (ac_try="$ac_compile"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -s conftest.$ac_objext'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_ungif=yes
-+ ncbi_cv_lib_freetype_fix_include=no
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_ungif=no
--fi
--rm -f conftest.err conftest.$ac_objext \
-- conftest$ac_exeext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_ungif" >&5
--echo "${ECHO_T}$ncbi_cv_lib_ungif" >&6
-- if test "$ncbi_cv_lib_ungif" = "no"; then
-- if test "${with_ungif:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-ungif explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-ungif explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- fi
-- if test "$with_ungif" = "no"; then
-- UNGIF_PATH="No_UNGIF"
-- UNGIF_INCLUDE=
-- UNGIF_LIBS=
-- else
-- WithPackages="$WithPackages${WithPackagesSep}UNGIF"; WithPackagesSep=" "
-- UNGIF_INCLUDE=" $UNGIF_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBUNGIF 1
--_ACEOF
--
-+ ncbi_cv_lib_freetype_fix_include=yes
- fi
-
--
--
--if test "$with_ungif" = "no"; then
-- if test "$with_gif" != "no"; then
-- case "$with_gif" in
-- yes | "" ) ;;
-- * ) GIF_PATH=$with_gif ;;
-- esac
-- if test -d "$GIF_PATH"; then
-- in_path=" in $GIF_PATH"
-- if test -z "$GIF_INCLUDE" -a -d "$GIF_PATH/include"; then
-- GIF_INCLUDE="-I$GIF_PATH/include"
-- fi
-- if test -n "$GIF_LIBPATH"; then
-- :
-- elif test -d "$GIF_PATH/lib${bit64_sfx}"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $GIF_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- GIF_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $GIF_PATH/lib${bit64_sfx}; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-- elif test -d "$GIF_PATH/lib"; then
-- ncbi_rp_L_flags=
-- ncbi_rp_L_sep=$CONF_f_libpath
-- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $GIF_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- done
-- GIF_LIBPATH="${ncbi_rp_L_flags}"
-- else
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $GIF_PATH/lib; do
-- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_L_sep=" $CONF_f_libpath"
-- x=`echo $x | sed -e "$ncbi_rpath_sed"`
-- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-- ncbi_rp_R_sep=:
-- done
-- GIF_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-- fi
-+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
-- GIF_LIBS="$GIF_LIBPATH -lgif $X_LIBS -lX11"
-- else
-- GIF_INCLUDE=""
-- GIF_LIBS="-lgif $X_LIBS -lX11"
-- in_path=
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype_fix_include" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_freetype_fix_include" >&6; }
-+ if test "$ncbi_cv_lib_freetype_fix_include" = yes; then
-+ FREETYPE_INCLUDE=`echo "$FREETYPE_INCLUDE" |\
-+ sed -e 's:\(-I[^ ]*\)\(/freetype2\):\1 \1\2:g'`
- fi
-- echo "$as_me:$LINENO: checking for libgif$in_path" >&5
--echo $ECHO_N "checking for libgif$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_gif+set}" = set; then
-+ { echo "$as_me:$LINENO: checking whether FreeType works" >&5
-+echo $ECHO_N "checking whether FreeType works... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_freetype+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $GIF_INCLUDE $orig_CPPFLAGS"
-- LIBS="$GIF_LIBS $orig_LIBS"
-+ CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$FREETYPE_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--extern "C" {
-- #include <gif_lib.h>
-- }
-+#include <ft2build.h>
-+ #include FT_FREETYPE_H
- int
- main ()
- {
--GifFileType* fp = DGifOpenFileName("foo");
-+FT_Select_Charmap(NULL, ft_encoding_unicode);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_gif=yes
-+ ncbi_cv_lib_freetype=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_gif=no
-+ ncbi_cv_lib_freetype=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
+--- ncbi_cxx--12_0_0/src/build-system/configure.ori 2014-06-25 23:47:05.000000000 +0200
++++ ncbi_cxx--12_0_0/src/build-system/configure 2014-06-25 23:52:35.000000000 +0200
+@@ -927,7 +927,7 @@
+ --without-distcc do not automatically use distcc if available
+ --without-ncbi-c do not use NCBI C Toolkit
+ --without-sss do not use NCBI SSS libraries
+- --without-utils do not use NCBI SSS UTIL library
++ --without-sssutils do not use NCBI SSS UTIL library
+ --without-sssdb do not use NCBI SSS DB library
+ --with-included-sss use the in-tree copy of SSS
+ --with-z=DIR use zlib installation in DIR
+@@ -2965,13 +2965,13 @@
+ ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
+ geo included-geo \
+ z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
+-ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
++ftds mysql orbacus odbc freetype ftgl opengl mesa glut glew glew-mx \
+ bdb python perl jni sqlite3 icu boost boost-tag \
+ sp expat sablot libxml libxslt libexslt xerces xalan zorba \
+ oechem sge muparser hdf5 \
+ gif jpeg tiff png xpm magic curl mimetic 3psw \
+ local-lbsm ncbi-crypt connext \
+-serial objects dbapi app ctools gui algo internal gbench"
++serial objects dbapi app ctools gui algo internal gbench x"
+
+ x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
+
+@@ -2995,6 +2995,7 @@
+ case "$x_arg" in
+ --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
+ | --cache-file= | --build= | --host= | --target= | --with-runpath= \
++ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
+ | --with-relative-runpath= | --x-includes= | --x-libraries= )
+ { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
+ echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
+@@ -3007,6 +3008,7 @@
+ | --with-universal=* | --with-tcheck=* \
+ | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
+ | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
++ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
+ | [A-Z]*=* \
+ | --with-z=* | --with-bz2=* | --with-lzo=* \
+ | --with-pcre=* \
+@@ -3201,6 +3203,17 @@
+ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
+ esac
fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_gif" >&5
--echo "${ECHO_T}$ncbi_cv_lib_gif" >&6
-- if test "$ncbi_cv_lib_gif" = "no"; then
-- if test "${with_gif:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-gif explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-gif explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_freetype" >&6; }
-+ if test "$ncbi_cv_lib_freetype" = no; then
-+ if test "${with_freetype:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
++if test -n "$with_projects"; then
++ case "$with_projects" in
++ /* ) abs_projects=$with_projects ;;
++ yes) abs_projects=$srcdir/projects ;;
++ * ) abs_projects=$srcdir/$with_projects ;;
++ esac
++ test -r "$abs_projects" || \
++ { { echo "$as_me:$LINENO: error: unable to read requested projects file \"$abs_projects\"." >&5
++echo "$as_me: error: unable to read requested projects file \"$abs_projects\"." >&2;}
+ { (exit 1); exit 1; }; }
-+ fi
-+ fi
-+ else
-+ if test "${with_freetype:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_gif" = "no"; then
-- GIF_PATH="No_GIF"
-- GIF_INCLUDE=
-- GIF_LIBS=
-+if test "$with_freetype" = "no" ; then
-+ FREETYPE_PATH="No_FREETYPE"
-+ FREETYPE_INCLUDE=
-+ FREETYPE_LIBS=
-+else
-+ WithPackages="$WithPackages${WithPackagesSep}FreeType"; WithPackagesSep=" "
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_FREETYPE 1
-+_ACEOF
-+
-+fi
-+
-+case "$with_ftgl" in
-+ yes | '' ) ;;
-+ * ) FTGL_PATH=$with_ftgl ;;
-+esac
-+
-+if test -d "$FTGL_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $FTGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $FTGL_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ FTGL_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$FTGL_PATH" in
-+ /*) ;;
-+ * ) FTGL_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) FTGL_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
+fi
-+if test -d "$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-+ FTGL_LIBDIR=$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
-+elif test -d "$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-+ FTGL_LIBDIR=$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
-+fi
-+ncbi_fix_dir_tmp=`if cd $FTGL_LIBDIR; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $FTGL_LIBDIR && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ FTGL_LIBDIR=$ncbi_fix_dir_tmp2
- else
-- WithPackages="$WithPackages${WithPackagesSep}GIF"; WithPackagesSep=" "
-- GIF_INCLUDE=" $GIF_INCLUDE"
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBGIF 1
--_ACEOF
--
-+ case "$FTGL_LIBDIR" in
-+ /*) ;;
-+ * ) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
-+ esac
- fi
--
--
--
-+ ;;
-+ /*) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
-+ esac
-+ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $FTGL_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ FTGL_LIBPATH="${ncbi_rp_L_flags}"
- else
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBGIF 1
--_ACEOF
--
-- GIF_INCLUDE=$UNGIF_INCLUDE
-- GIF_LIBS=$UNGIF_LIBS
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $FTGL_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
--test -n "$x_libraries" && : ${XPM_PATH=`dirname "$x_libraries"`}
--if test "$with_xpm" != "no"; then
-- case "$with_xpm" in
-+if test "$with_ftgl" != "no"; then
-+ case "$with_ftgl" in
- yes | "" ) ;;
-- * ) XPM_PATH=$with_xpm ;;
-+ * ) FTGL_PATH=$with_ftgl ;;
- esac
-- if test -d "$XPM_PATH"; then
-- in_path=" in $XPM_PATH"
-- if test -z "$XPM_INCLUDE" -a -d "$XPM_PATH/include"; then
-- XPM_INCLUDE="-I$XPM_PATH/include"
-+ if test -d "$FTGL_PATH"; then
-+ in_path=" in $FTGL_PATH"
-+ if test -z "$FTGL_INCLUDE" -a -d "$FTGL_PATH/include"; then
-+ FTGL_INCLUDE="-I$FTGL_PATH/include"
- fi
-- if test -n "$XPM_LIBPATH"; then
-+ if test -n "$FTGL_LIBPATH"; then
- :
-- elif test -d "$XPM_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$FTGL_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $XPM_PATH/lib${bit64_sfx}; do
-+ for x in $FTGL_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- XPM_LIBPATH="${ncbi_rp_L_flags}"
-+ FTGL_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $XPM_PATH/lib${bit64_sfx}; do
-+ for x in $FTGL_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$XPM_PATH/lib"; then
-+ elif test -d "$FTGL_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $XPM_PATH/lib; do
-+ for x in $FTGL_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- XPM_LIBPATH="${ncbi_rp_L_flags}"
-+ FTGL_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $XPM_PATH/lib; do
-+ for x in $FTGL_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- XPM_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- XPM_LIBS="$XPM_LIBPATH -lXpm $X_LIBS -lX11"
-+ FTGL_LIBS="$FTGL_LIBPATH -lftgl $FREETYPE_LIBS"
- else
-- XPM_INCLUDE=""
-- XPM_LIBS="-lXpm $X_LIBS -lX11"
-+ FTGL_INCLUDE=""
-+ FTGL_LIBS="-lftgl $FREETYPE_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libXpm$in_path" >&5
--echo $ECHO_N "checking for libXpm$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_xpm+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libftgl$in_path" >&5
-+echo $ECHO_N "checking for libftgl$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_ftgl+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$X_CFLAGS $XPM_INCLUDE $orig_CPPFLAGS"
-- LIBS="$XPM_LIBS $orig_LIBS"
-+ CPPFLAGS="$FREETYPE_INCLUDE $FTGL_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$FTGL_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <X11/xpm.h>
-+#include <FTGL/ftgl.h>
- int
- main ()
- {
--XpmImage image; XpmInfo info;
-- XpmReadFileToXpmImage("foo", &image, &info);
-+FTSimpleLayout layout;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_xpm=yes
-+ ncbi_cv_lib_ftgl=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
+ #### Always define this
--ncbi_cv_lib_xpm=no
-+ ncbi_cv_lib_ftgl=no
+@@ -17878,68 +17891,6 @@
fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_xpm" >&5
--echo "${ECHO_T}$ncbi_cv_lib_xpm" >&6
-- if test "$ncbi_cv_lib_xpm" = "no"; then
-- if test "${with_xpm:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-xpm explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-xpm explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_ftgl" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_ftgl" >&6; }
-+ if test "$ncbi_cv_lib_ftgl" = "no"; then
-+ if test "${with_ftgl:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-ftgl explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-ftgl explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_xpm" = "no"; then
-- XPM_PATH="No_XPM"
-- XPM_INCLUDE=
-- XPM_LIBS=
-+ if test "$with_ftgl" = "no"; then
-+ FTGL_PATH="No_FTGL"
-+ FTGL_INCLUDE=
-+ FTGL_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}XPM"; WithPackagesSep=" "
-- XPM_INCLUDE="$X_CFLAGS $XPM_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}FTGL"; WithPackagesSep=" "
-+ FTGL_INCLUDE="$FREETYPE_INCLUDE $FTGL_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBXPM 1
-+#define HAVE_LIBFTGL 1
- _ACEOF
-
- fi
-
--# The use of X_CFLAGS is probably redundant, but shouldn't hurt.
-
--## FreeType and FTGL
--if test "$with_freetype" != "no" ; then
-- : ${FREETYPE_BINPATH=$FREETYPE_PATH/bin}
-- # Extract the first word of "freetype-config", so it can be a program name with args.
--set dummy freetype-config; ac_word=$2
--echo "$as_me:$LINENO: checking for $ac_word" >&5
--echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
--if test "${ac_cv_path_freetype_config+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- case $freetype_config in
-- [\\/]* | ?:[\\/]*)
-- ac_cv_path_freetype_config="$freetype_config" # Let the user override the test with a path.
-- ;;
-- *)
-- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--as_dummy="$FREETYPE_BINPATH:$PATH"
--for as_dir in $as_dummy
--do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- for ac_exec_ext in '' $ac_executable_extensions; do
-- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-- ac_cv_path_freetype_config="$as_dir/$ac_word$ac_exec_ext"
-- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-- break 2
-- fi
--done
--done
-
-- ;;
-+if test "$with_magic" != "no"; then
-+ case "$with_magic" in
-+ yes | "" ) ;;
-+ * ) MAGIC_PATH=$with_magic ;;
- esac
-+ if test -d "$MAGIC_PATH"; then
-+ in_path=" in $MAGIC_PATH"
-+ if test -z "$MAGIC_INCLUDE" -a -d "$MAGIC_PATH/include"; then
-+ MAGIC_INCLUDE="-I$MAGIC_PATH/include"
- fi
--freetype_config=$ac_cv_path_freetype_config
--
--if test -n "$freetype_config"; then
-- echo "$as_me:$LINENO: result: $freetype_config" >&5
--echo "${ECHO_T}$freetype_config" >&6
--else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
--fi
--
-- if test -n "$freetype_config" ; then
-- : ${FREETYPE_BINPATH=`dirname $freetype_config`}
-- : ${FREETYPE_INCLUDE=`$freetype_config --cflags`}
-- if test -z "${FREETYPE_LIBS+set}"; then
-+ if test -n "$MAGIC_LIBPATH"; then
-+ :
-+ elif test -d "$MAGIC_PATH/lib${bit64_sfx}"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- FREETYPE_LIBS=`$freetype_config --libs | sed -e "$no_usr_lib"`
-+ for x in $MAGIC_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ MAGIC_LIBPATH="${ncbi_rp_L_flags}"
- else
-- FREETYPE_LIBS=
-- ncbi_rp_L_sep=
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in `$freetype_config --libs | sed -e "$no_usr_lib"`; do
-- case "$x" in
-- -L*)
-- FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_L_sep}$x"
-- x=`echo $x | sed -e "s/^-L//; $ncbi_rpath_sed"`
-+ for x in $MAGIC_PATH/lib${bit64_sfx}; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
-- ;;
-- *)
-- FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}${ncbi_rp_L_sep}$x"
-- ncbi_rp_R_flags=
-- ncbi_rp_R_sep=" $CONF_f_runpath"
-- ;;
-- esac
-- ncbi_rp_L_sep=" "
- done
-- FREETYPE_LIBS="$FREETYPE_LIBS${ncbi_rp_R_flags}"
-- fi
-- fi
-- case "$host_os:$bit64_sfx" in
-- solaris*:64 )
-- ftprefix=`$freetype_config --exec-prefix`
-- if test -d "$ftprefix/lib/64"; then
-- FREETYPE_LIBS=`echo $FREETYPE_LIBS \
-- | sed -e "s,$ftprefix/lib ,$ftprefix/lib/64 ,g"`
-- fi
-- ;;
-- esac
-- echo "$as_me:$LINENO: checking whether FREETYPE_INCLUDE needs doctoring" >&5
--echo $ECHO_N "checking whether FREETYPE_INCLUDE needs doctoring... $ECHO_C" >&6
--if test "${ncbi_cv_lib_freetype_fix_include+set}" = set; then
+-echo "$as_me:$LINENO: checking for std::is_sorted<> in <algorithm>" >&5
+-echo $ECHO_N "checking for std::is_sorted<> in <algorithm>... $ECHO_C" >&6
+-if test "${ncbi_cv_func_is_sorted+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-- CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
-- cat >conftest.$ac_ext <<_ACEOF
+- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h. */
--#include <ft2build.h>
+-#include <algorithm>
-int
-main ()
-{
--
+-int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;
- ;
- return 0;
-}
@@ -40445,3969 +96,121 @@
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_lib_freetype_fix_include=no
-+ MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+ elif test -d "$MAGIC_PATH/lib"; then
-+ ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $MAGIC_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ MAGIC_LIBPATH="${ncbi_rp_L_flags}"
- else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_lib_freetype_fix_include=yes
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $MAGIC_PATH/lib; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype_fix_include" >&5
--echo "${ECHO_T}$ncbi_cv_lib_freetype_fix_include" >&6
-- if test "$ncbi_cv_lib_freetype_fix_include" = yes; then
-- FREETYPE_INCLUDE=`echo "$FREETYPE_INCLUDE" |\
-- sed -e 's:\(-I[^ ]*\)\(/freetype2\):\1 \1\2:g'`
-+ MAGIC_LIBS="$MAGIC_LIBPATH -lmagic "
-+ else
-+ MAGIC_INCLUDE=""
-+ MAGIC_LIBS="-lmagic "
-+ in_path=
- fi
-- echo "$as_me:$LINENO: checking whether FreeType works" >&5
--echo $ECHO_N "checking whether FreeType works... $ECHO_C" >&6
--if test "${ncbi_cv_lib_freetype+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libmagic$in_path" >&5
-+echo $ECHO_N "checking for libmagic$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_magic+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$FREETYPE_INCLUDE $orig_CPPFLAGS"
-- LIBS="$FREETYPE_LIBS $orig_LIBS"
-+ CPPFLAGS=" $MAGIC_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$MAGIC_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <ft2build.h>
-- #include FT_FREETYPE_H
-+#include <magic.h>
- int
- main ()
- {
--FT_Select_Charmap(NULL, ft_encoding_unicode);
-+magic_t m = magic_open(17);
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_freetype=yes
-+ ncbi_cv_lib_magic=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_freetype=no
-+ ncbi_cv_lib_magic=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_freetype" >&5
--echo "${ECHO_T}$ncbi_cv_lib_freetype" >&6
-- if test "$ncbi_cv_lib_freetype" = no; then
-- if test "${with_freetype:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
-- { (exit 1); exit 1; }; }
-- fi
-- fi
-- else
-- if test "${with_freetype:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-freetype explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-freetype explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_magic" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_magic" >&6; }
-+ if test "$ncbi_cv_lib_magic" = "no"; then
-+ if test "${with_magic:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-magic explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-magic explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
--if test "$with_freetype" = "no" ; then
-- FREETYPE_PATH="No_FREETYPE"
-- FREETYPE_INCLUDE=
-- FREETYPE_LIBS=
-+ if test "$with_magic" = "no"; then
-+ MAGIC_PATH="No_MAGIC"
-+ MAGIC_INCLUDE=
-+ MAGIC_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}FreeType"; WithPackagesSep=" "
-+ WithPackages="$WithPackages${WithPackagesSep}MAGIC"; WithPackagesSep=" "
-+ MAGIC_INCLUDE=" $MAGIC_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_FREETYPE 1
-+#define HAVE_LIBMAGIC 1
- _ACEOF
-
- fi
-
--case "$with_ftgl" in
-- yes | '' ) : ${FTGL_PATH=$NCBI/ftgl} ;;
-- * ) FTGL_PATH=$with_ftgl ;;
--esac
-
--if test -d "$FTGL_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $FTGL_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+
-+
-+
-+# Mimetic
-+case "$with_mimetic" in
-+ yes | '' ) ;;
-+ * ) MIMETIC_PATH=$with_mimetic ;;
-+esac
-+if test -d "$MIMETIC_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $MIMETIC_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $FTGL_PATH && $smart_pwd 2>/dev/null`
-+ /.*) ncbi_fix_dir_tmp2=`cd $MIMETIC_PATH && $smart_pwd 2>/dev/null`
- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- FTGL_PATH=$ncbi_fix_dir_tmp2
-+ MIMETIC_PATH=$ncbi_fix_dir_tmp2
- else
-- case "$FTGL_PATH" in
-+ case "$MIMETIC_PATH" in
- /*) ;;
-- * ) FTGL_PATH=$ncbi_fix_dir_tmp ;;
-+ * ) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
- ;;
-- /*) FTGL_PATH=$ncbi_fix_dir_tmp ;;
-+ /*) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
--if test -d "$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-- FTGL_LIBDIR=$FTGL_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib
--elif test -d "$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib"; then
-- FTGL_LIBDIR=$FTGL_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib
--fi
--ncbi_fix_dir_tmp=`if cd $FTGL_LIBDIR; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $FTGL_LIBDIR && $smart_pwd 2>/dev/null`
-- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- FTGL_LIBDIR=$ncbi_fix_dir_tmp2
-- else
-- case "$FTGL_LIBDIR" in
-- /*) ;;
-- * ) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
-- esac
-+for d in "$MIMETIC_LIBDIR" \
-+ "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib" \
-+ "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib" \
-+ "$MIMETIC_PATH/lib${bit64_sfx}" \
-+ "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}/lib" \
-+ "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}/lib" \
-+ "$MIMETIC_PATH/lib"; do
-+ if test -d "$d"; then
-+ MIMETIC_LIBDIR=$d
-+ break
- fi
-- ;;
-- /*) FTGL_LIBDIR=$ncbi_fix_dir_tmp ;;
-- esac
-+done
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $FTGL_LIBDIR; do
-+ for x in $MIMETIC_LIBDIR; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- FTGL_LIBPATH="${ncbi_rp_L_flags}"
-+ MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $FTGL_LIBDIR; do
-+ for x in $MIMETIC_LIBDIR; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-
--if test "$with_ftgl" != "no"; then
-- case "$with_ftgl" in
-+if test "$with_mimetic" != "no"; then
-+ case "$with_mimetic" in
- yes | "" ) ;;
-- * ) FTGL_PATH=$with_ftgl ;;
-+ * ) MIMETIC_PATH=$with_mimetic ;;
- esac
-- if test -d "$FTGL_PATH"; then
-- in_path=" in $FTGL_PATH"
-- if test -z "$FTGL_INCLUDE" -a -d "$FTGL_PATH/include"; then
-- FTGL_INCLUDE="-I$FTGL_PATH/include"
-+ if test -d "$MIMETIC_PATH"; then
-+ in_path=" in $MIMETIC_PATH"
-+ if test -z "$MIMETIC_INCLUDE" -a -d "$MIMETIC_PATH/include"; then
-+ MIMETIC_INCLUDE="-I$MIMETIC_PATH/include"
- fi
-- if test -n "$FTGL_LIBPATH"; then
-+ if test -n "$MIMETIC_LIBPATH"; then
- :
-- elif test -d "$FTGL_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$MIMETIC_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $FTGL_PATH/lib${bit64_sfx}; do
-+ for x in $MIMETIC_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- FTGL_LIBPATH="${ncbi_rp_L_flags}"
-+ MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $FTGL_PATH/lib${bit64_sfx}; do
-+ for x in $MIMETIC_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$FTGL_PATH/lib"; then
-+ elif test -d "$MIMETIC_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $FTGL_PATH/lib; do
-+ for x in $MIMETIC_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- FTGL_LIBPATH="${ncbi_rp_L_flags}"
-+ MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $FTGL_PATH/lib; do
-+ for x in $MIMETIC_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- FTGL_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- FTGL_LIBS="$FTGL_LIBPATH -lftgl $FREETYPE_LIBS"
-+ MIMETIC_LIBS="$MIMETIC_LIBPATH -lmimetic "
- else
-- FTGL_INCLUDE=""
-- FTGL_LIBS="-lftgl $FREETYPE_LIBS"
-+ MIMETIC_INCLUDE=""
-+ MIMETIC_LIBS="-lmimetic "
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libftgl$in_path" >&5
--echo $ECHO_N "checking for libftgl$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_ftgl+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libmimetic$in_path" >&5
-+echo $ECHO_N "checking for libmimetic$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_mimetic+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS="$FREETYPE_INCLUDE $FTGL_INCLUDE $orig_CPPFLAGS"
-- LIBS="$FTGL_LIBS $orig_LIBS"
-+ CPPFLAGS=" $MIMETIC_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$MIMETIC_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <FTGL/ftgl.h>
-+#include <mimetic/mimetic.h>
- int
- main ()
- {
--FTSimpleLayout layout;
-+mimetic::MimeEntity me;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_ftgl=yes
-+ ncbi_cv_lib_mimetic=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_ftgl=no
-+ ncbi_cv_lib_mimetic=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_ftgl" >&5
--echo "${ECHO_T}$ncbi_cv_lib_ftgl" >&6
-- if test "$ncbi_cv_lib_ftgl" = "no"; then
-- if test "${with_ftgl:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-ftgl explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-ftgl explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_mimetic" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_mimetic" >&6; }
-+ if test "$ncbi_cv_lib_mimetic" = "no"; then
-+ if test "${with_mimetic:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-mimetic explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-mimetic explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_ftgl" = "no"; then
-- FTGL_PATH="No_FTGL"
-- FTGL_INCLUDE=
-- FTGL_LIBS=
-+ if test "$with_mimetic" = "no"; then
-+ MIMETIC_PATH="No_MIMETIC"
-+ MIMETIC_INCLUDE=
-+ MIMETIC_LIBS=
-+ else
-+ WithPackages="$WithPackages${WithPackagesSep}MIMETIC"; WithPackagesSep=" "
-+ MIMETIC_INCLUDE=" $MIMETIC_INCLUDE"
-+
-+cat >>confdefs.h <<\_ACEOF
-+#define HAVE_LIBMIMETIC 1
-+_ACEOF
-+
-+ fi
-+
-+
-+
-+
-+
-+# gSOAP++
-+case "$with_gsoap" in
-+ yes | '' ) ;;
-+ * ) GSOAP_PATH=$with_gsoap ;;
-+esac
-+if test -d "$GSOAP_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $GSOAP_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $GSOAP_PATH && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ GSOAP_PATH=$ncbi_fix_dir_tmp2
-+ else
-+ case "$GSOAP_PATH" in
-+ /*) ;;
-+ * ) GSOAP_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) GSOAP_PATH=$ncbi_fix_dir_tmp ;;
-+ esac
-+fi
-+for d in "$GSOAP_LIBDIR" \
-+ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-+ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}${bit64_sfx}/lib" \
-+ "$GSOAP_PATH/lib${bit64_sfx}" \
-+ "$GSOAP_PATH/${compiler_vpfx}${DEBUG_SFX}${mt_sfx}/lib" \
-+ "$GSOAP_PATH/${compiler_pfx}${DEBUG_SFX}${mt_sfx}/lib" \
-+ "$GSOAP_PATH/lib"; do
-+ if test -d "$d"; then
-+ GSOAP_LIBDIR=$d
-+ ncbi_fix_dir_tmp=`if cd $GSOAP_LIBDIR; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+ case "$ncbi_fix_dir_tmp" in
-+ /.*) ncbi_fix_dir_tmp2=`cd $GSOAP_LIBDIR && $smart_pwd 2>/dev/null`
-+ if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-+ GSOAP_LIBDIR=$ncbi_fix_dir_tmp2
-+ else
-+ case "$GSOAP_LIBDIR" in
-+ /*) ;;
-+ * ) GSOAP_LIBDIR=$ncbi_fix_dir_tmp ;;
-+ esac
-+ fi
-+ ;;
-+ /*) GSOAP_LIBDIR=$ncbi_fix_dir_tmp ;;
-+ esac
-+ break
-+ fi
-+done
-+ncbi_rp_L_flags=
-+ ncbi_rp_L_sep=$CONF_f_libpath
-+ if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-+ for x in $GSOAP_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ done
-+ GSOAP_LIBPATH="${ncbi_rp_L_flags}"
-+ else
-+ ncbi_rp_R_flags=
-+ ncbi_rp_R_sep=" $CONF_f_runpath"
-+ for x in $GSOAP_LIBDIR; do
-+ ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
-+ ncbi_rp_L_sep=" $CONF_f_libpath"
-+ x=`echo $x | sed -e "$ncbi_rpath_sed"`
-+ ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
-+ ncbi_rp_R_sep=:
-+ done
-+ GSOAP_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ fi
-+
-+: ${GSOAP_BINDIR=`dirname "$GSOAP_LIBDIR"`/bin}
-+# Extract the first word of "soapcpp2", so it can be a program name with args.
-+set dummy soapcpp2; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_GSOAP_SOAPCPP2+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ case $GSOAP_SOAPCPP2 in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_GSOAP_SOAPCPP2="$GSOAP_SOAPCPP2" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+as_dummy="$GSOAP_BINDIR:$PATH"
-+for as_dir in $as_dummy
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_GSOAP_SOAPCPP2="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
-+ fi
-+done
-+done
-+IFS=$as_save_IFS
-+
-+ ;;
-+esac
-+fi
-+GSOAP_SOAPCPP2=$ac_cv_path_GSOAP_SOAPCPP2
-+if test -n "$GSOAP_SOAPCPP2"; then
-+ { echo "$as_me:$LINENO: result: $GSOAP_SOAPCPP2" >&5
-+echo "${ECHO_T}$GSOAP_SOAPCPP2" >&6; }
- else
-- WithPackages="$WithPackages${WithPackagesSep}FTGL"; WithPackagesSep=" "
-- FTGL_INCLUDE="$FREETYPE_INCLUDE $FTGL_INCLUDE"
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+fi
-
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBFTGL 1
--_ACEOF
-
-+# Extract the first word of "wsdl2h", so it can be a program name with args.
-+set dummy wsdl2h; ac_word=$2
-+{ echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
-+if test "${ac_cv_path_GSOAP_WSDL2H+set}" = set; then
-+ echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+ case $GSOAP_WSDL2H in
-+ [\\/]* | ?:[\\/]*)
-+ ac_cv_path_GSOAP_WSDL2H="$GSOAP_WSDL2H" # Let the user override the test with a path.
-+ ;;
-+ *)
-+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+as_dummy="$GSOAP_BINDIR:$PATH"
-+for as_dir in $as_dummy
-+do
-+ IFS=$as_save_IFS
-+ test -z "$as_dir" && as_dir=.
-+ for ac_exec_ext in '' $ac_executable_extensions; do
-+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
-+ ac_cv_path_GSOAP_WSDL2H="$as_dir/$ac_word$ac_exec_ext"
-+ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+ break 2
- fi
-+done
-+done
-+IFS=$as_save_IFS
-
-+ ;;
-+esac
-+fi
-+GSOAP_WSDL2H=$ac_cv_path_GSOAP_WSDL2H
-+if test -n "$GSOAP_WSDL2H"; then
-+ { echo "$as_me:$LINENO: result: $GSOAP_WSDL2H" >&5
-+echo "${ECHO_T}$GSOAP_WSDL2H" >&6; }
-+else
-+ { echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6; }
-+fi
-
-
-
--
--if test "$with_magic" != "no"; then
-- case "$with_magic" in
-+if test "$with_gsoap" != "no"; then
-+ case "$with_gsoap" in
- yes | "" ) ;;
-- * ) MAGIC_PATH=$with_magic ;;
-+ * ) GSOAP_PATH=$with_gsoap ;;
- esac
-- if test -d "$MAGIC_PATH"; then
-- in_path=" in $MAGIC_PATH"
-- if test -z "$MAGIC_INCLUDE" -a -d "$MAGIC_PATH/include"; then
-- MAGIC_INCLUDE="-I$MAGIC_PATH/include"
-+ if test -d "$GSOAP_PATH"; then
-+ in_path=" in $GSOAP_PATH"
-+ if test -z "$GSOAP_INCLUDE" -a -d "$GSOAP_PATH/include"; then
-+ GSOAP_INCLUDE="-I$GSOAP_PATH/include"
- fi
-- if test -n "$MAGIC_LIBPATH"; then
-+ if test -n "$GSOAP_LIBPATH"; then
- :
-- elif test -d "$MAGIC_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$GSOAP_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $MAGIC_PATH/lib${bit64_sfx}; do
-+ for x in $GSOAP_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- MAGIC_LIBPATH="${ncbi_rp_L_flags}"
-+ GSOAP_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $MAGIC_PATH/lib${bit64_sfx}; do
-+ for x in $GSOAP_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GSOAP_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$MAGIC_PATH/lib"; then
-+ elif test -d "$GSOAP_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $MAGIC_PATH/lib; do
-+ for x in $GSOAP_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- MAGIC_LIBPATH="${ncbi_rp_L_flags}"
-+ GSOAP_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $MAGIC_PATH/lib; do
-+ for x in $GSOAP_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- MAGIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ GSOAP_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- MAGIC_LIBS="$MAGIC_LIBPATH -lmagic "
-+ GSOAP_LIBS="$GSOAP_LIBPATH -lgsoapssl++ $OPENSSL_LIBS $Z_LIBS"
- else
-- MAGIC_INCLUDE=""
-- MAGIC_LIBS="-lmagic "
-+ GSOAP_INCLUDE=""
-+ GSOAP_LIBS="-lgsoapssl++ $OPENSSL_LIBS $Z_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libmagic$in_path" >&5
--echo $ECHO_N "checking for libmagic$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_magic+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libgsoapssl++$in_path" >&5
-+echo $ECHO_N "checking for libgsoapssl++$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_gsoap+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $MAGIC_INCLUDE $orig_CPPFLAGS"
-- LIBS="$MAGIC_LIBS $orig_LIBS"
-+ CPPFLAGS=" $GSOAP_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$GSOAP_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <magic.h>
-+#include <stdsoap2.h>
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultcode(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultsubcode(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultstring(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultdetail(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultsubcode(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultdetail(struct soap*)
-+ { return NULL; }
-+ SOAP_FMAC3 void SOAP_FMAC4 soap_serializeheader(struct soap*) { }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_putheader(struct soap*) { return 0; }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_getheader(struct soap*) { return 0; }
-+ SOAP_FMAC3 void SOAP_FMAC4 soap_serializefault(struct soap*) { }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_putfault(struct soap*) { return 0; }
-+ SOAP_FMAC3 int SOAP_FMAC4 soap_getfault(struct soap*) { return 0; }
- int
- main ()
- {
--magic_t m = magic_open(17);
-+soap s;
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_magic=yes
-+ ncbi_cv_lib_gsoap=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_magic=no
-+ ncbi_cv_lib_gsoap=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_magic" >&5
--echo "${ECHO_T}$ncbi_cv_lib_magic" >&6
-- if test "$ncbi_cv_lib_magic" = "no"; then
-- if test "${with_magic:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-magic explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-magic explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_gsoap" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_gsoap" >&6; }
-+ if test "$ncbi_cv_lib_gsoap" = "no"; then
-+ if test "${with_gsoap:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-gsoap explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-gsoap explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_magic" = "no"; then
-- MAGIC_PATH="No_MAGIC"
-- MAGIC_INCLUDE=
-- MAGIC_LIBS=
-+ if test "$with_gsoap" = "no"; then
-+ GSOAP_PATH="No_GSOAP"
-+ GSOAP_INCLUDE=
-+ GSOAP_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}MAGIC"; WithPackagesSep=" "
-- MAGIC_INCLUDE=" $MAGIC_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}GSOAP"; WithPackagesSep=" "
-+ GSOAP_INCLUDE=" $GSOAP_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBMAGIC 1
-+#define HAVE_LIBGSOAP 1
- _ACEOF
-
- fi
-@@ -33831,203 +38960,218 @@
-
-
-
--
--# Mimetic
--case "$with_mimetic" in
-- yes | '' ) : ${MIMETIC_PATH=$NCBI/mimetic} ;;
-- * ) MIMETIC_PATH=$with_mimetic ;;
-+case "$with_sqlite3" in
-+ yes | '' ) ;;
-+ * ) SQLITE3_PATH=$with_sqlite3 ;;
- esac
--if test -d "$MIMETIC_PATH"; then
-- ncbi_fix_dir_tmp=`if cd $MIMETIC_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
-+
-+
-+# MongoDB
-+if test -d "$MONGODB_PATH"; then
-+ ncbi_fix_dir_tmp=`if cd $MONGODB_PATH; then $as_unset PWD || test "${PWD+set}" != set || { PWD=; export PWD; }; /bin/pwd; fi`
- case "$ncbi_fix_dir_tmp" in
-- /.*) ncbi_fix_dir_tmp2=`cd $MIMETIC_PATH && $smart_pwd 2>/dev/null`
-+ /.*) ncbi_fix_dir_tmp2=`cd $MONGODB_PATH && $smart_pwd 2>/dev/null`
- if test -n "$ncbi_fix_dir_tmp2" -a -d "$ncbi_fix_dir_tmp2"; then
-- MIMETIC_PATH=$ncbi_fix_dir_tmp2
-+ MONGODB_PATH=$ncbi_fix_dir_tmp2
- else
-- case "$MIMETIC_PATH" in
-+ case "$MONGODB_PATH" in
- /*) ;;
-- * ) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
-+ * ) MONGODB_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
- ;;
-- /*) MIMETIC_PATH=$ncbi_fix_dir_tmp ;;
-+ /*) MONGODB_PATH=$ncbi_fix_dir_tmp ;;
- esac
- fi
--for d in "$MIMETIC_LIBDIR" \
-- "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}${bit64_sfx}/lib" \
-- "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}${bit64_sfx}/lib" \
-- "$MIMETIC_PATH/lib${bit64_sfx}" \
-- "$MIMETIC_PATH/${compiler_vpfx}${DEBUG_SFX}/lib" \
-- "$MIMETIC_PATH/${compiler_pfx}${DEBUG_SFX}/lib" \
-- "$MIMETIC_PATH/lib"; do
-- if test -d "$d"; then
-- MIMETIC_LIBDIR=$d
-- break
-+if test -d $MONGODB_PATH/lib${bit64_sfx}; then
-+ MONGODB_LIBDIR=$MONGODB_PATH/lib${bit64_sfx}
-+else
-+ MONGODB_LIBDIR=$MONGODB_PATH/lib
- fi
--done
-+# need Boost rpath
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $MIMETIC_LIBDIR; do
-+ for x in $MONGODB_LIBDIR; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
-+ MONGODB_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $MIMETIC_LIBDIR; do
-+ for x in $MONGODB_LIBDIR; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ MONGODB_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
--
--if test "$with_mimetic" != "no"; then
-- case "$with_mimetic" in
-+if test "$with_mongodb" != "no"; then
-+ case "$with_mongodb" in
- yes | "" ) ;;
-- * ) MIMETIC_PATH=$with_mimetic ;;
-+ * ) MONGODB_PATH=$with_mongodb ;;
- esac
-- if test -d "$MIMETIC_PATH"; then
-- in_path=" in $MIMETIC_PATH"
-- if test -z "$MIMETIC_INCLUDE" -a -d "$MIMETIC_PATH/include"; then
-- MIMETIC_INCLUDE="-I$MIMETIC_PATH/include"
-+ if test -d "$MONGODB_PATH"; then
-+ in_path=" in $MONGODB_PATH"
-+ if test -z "$MONGODB_INCLUDE" -a -d "$MONGODB_PATH/include"; then
-+ MONGODB_INCLUDE="-I$MONGODB_PATH/include"
- fi
-- if test -n "$MIMETIC_LIBPATH"; then
-+ if test -n "$MONGODB_LIBPATH"; then
- :
-- elif test -d "$MIMETIC_PATH/lib${bit64_sfx}"; then
-+ elif test -d "$MONGODB_PATH/lib${bit64_sfx}"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $MIMETIC_PATH/lib${bit64_sfx}; do
-+ for x in $MONGODB_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
-+ MONGODB_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $MIMETIC_PATH/lib${bit64_sfx}; do
-+ for x in $MONGODB_PATH/lib${bit64_sfx}; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ MONGODB_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
-- elif test -d "$MIMETIC_PATH/lib"; then
-+ elif test -d "$MONGODB_PATH/lib"; then
- ncbi_rp_L_flags=
- ncbi_rp_L_sep=$CONF_f_libpath
- if test "x${CONF_f_runpath}" = "x${CONF_f_libpath}"; then
-- for x in $MIMETIC_PATH/lib; do
-+ for x in $MONGODB_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- done
-- MIMETIC_LIBPATH="${ncbi_rp_L_flags}"
-+ MONGODB_LIBPATH="${ncbi_rp_L_flags}"
- else
- ncbi_rp_R_flags=
- ncbi_rp_R_sep=" $CONF_f_runpath"
-- for x in $MIMETIC_PATH/lib; do
-+ for x in $MONGODB_PATH/lib; do
- ncbi_rp_L_flags="${ncbi_rp_L_flags}${ncbi_rp_L_sep}$x"
- ncbi_rp_L_sep=" $CONF_f_libpath"
- x=`echo $x | sed -e "$ncbi_rpath_sed"`
- ncbi_rp_R_flags="${ncbi_rp_R_flags}${ncbi_rp_R_sep}$x"
- ncbi_rp_R_sep=:
- done
-- MIMETIC_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
-+ MONGODB_LIBPATH="${ncbi_rp_L_flags}${ncbi_rp_R_flags}"
- fi
- fi
-- MIMETIC_LIBS="$MIMETIC_LIBPATH -lmimetic "
-+ MONGODB_LIBS="$MONGODB_LIBPATH -lmongoclient $BOOST_LIBPATH $boost_fs_lib $BOOST_THREAD_LIBS"
- else
-- MIMETIC_INCLUDE=""
-- MIMETIC_LIBS="-lmimetic "
-+ MONGODB_INCLUDE=""
-+ MONGODB_LIBS="-lmongoclient $BOOST_LIBPATH $boost_fs_lib $BOOST_THREAD_LIBS"
- in_path=
- fi
-- echo "$as_me:$LINENO: checking for libmimetic$in_path" >&5
--echo $ECHO_N "checking for libmimetic$in_path... $ECHO_C" >&6
--if test "${ncbi_cv_lib_mimetic+set}" = set; then
-+ { echo "$as_me:$LINENO: checking for libmongoclient$in_path" >&5
-+echo $ECHO_N "checking for libmongoclient$in_path... $ECHO_C" >&6; }
-+if test "${ncbi_cv_lib_mongodb+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
-- CPPFLAGS=" $MIMETIC_INCLUDE $orig_CPPFLAGS"
-- LIBS="$MIMETIC_LIBS $orig_LIBS"
-+ CPPFLAGS="$BOOST_INCLUDE $MONGODB_INCLUDE $orig_CPPFLAGS"
-+ LIBS="$MONGODB_LIBS $orig_LIBS"
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
- _ACEOF
- cat confdefs.h >>conftest.$ac_ext
- cat >>conftest.$ac_ext <<_ACEOF
- /* end confdefs.h. */
--#include <mimetic/mimetic.h>
-+#include <mongo/client/dbclient.h>
- int
- main ()
- {
--mimetic::MimeEntity me;
-+std::vector<mongo::HostAndPort> v;
-+ mongo::DBClientReplicaSet client("foo", v);
-+ client.connect();
- ;
- return 0;
- }
- _ACEOF
- rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
-+if { (ac_try="$ac_link"
-+case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-+ { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
-+ { (case "(($ac_try" in
-+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-+ *) ac_try_echo=$ac_try;;
-+esac
-+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-+ (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-- ncbi_cv_lib_mimetic=yes
-+ ncbi_cv_lib_mongodb=yes
- else
- echo "$as_me: failed program was:" >&5
- sed 's/^/| /' conftest.$ac_ext >&5
-
--ncbi_cv_lib_mimetic=no
-+ ncbi_cv_lib_mongodb=no
- fi
--rm -f conftest.err conftest.$ac_objext \
-+
-+rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
- fi
--echo "$as_me:$LINENO: result: $ncbi_cv_lib_mimetic" >&5
--echo "${ECHO_T}$ncbi_cv_lib_mimetic" >&6
-- if test "$ncbi_cv_lib_mimetic" = "no"; then
-- if test "${with_mimetic:=no}" != no; then
-- { { echo "$as_me:$LINENO: error: --with-mimetic explicitly specified, but no usable version found." >&5
--echo "$as_me: error: --with-mimetic explicitly specified, but no usable version found." >&2;}
-+{ echo "$as_me:$LINENO: result: $ncbi_cv_lib_mongodb" >&5
-+echo "${ECHO_T}$ncbi_cv_lib_mongodb" >&6; }
-+ if test "$ncbi_cv_lib_mongodb" = "no"; then
-+ if test "${with_mongodb:=no}" != no; then
-+ { { echo "$as_me:$LINENO: error: --with-mongodb explicitly specified, but no usable version found." >&5
-+echo "$as_me: error: --with-mongodb explicitly specified, but no usable version found." >&2;}
- { (exit 1); exit 1; }; }
- fi
- fi
- fi
-- if test "$with_mimetic" = "no"; then
-- MIMETIC_PATH="No_MIMETIC"
-- MIMETIC_INCLUDE=
-- MIMETIC_LIBS=
-+ if test "$with_mongodb" = "no"; then
-+ MONGODB_PATH="No_MONGODB"
-+ MONGODB_INCLUDE=
-+ MONGODB_LIBS=
- else
-- WithPackages="$WithPackages${WithPackagesSep}MIMETIC"; WithPackagesSep=" "
-- MIMETIC_INCLUDE=" $MIMETIC_INCLUDE"
-+ WithPackages="$WithPackages${WithPackagesSep}MONGODB"; WithPackagesSep=" "
-+ MONGODB_INCLUDE="$BOOST_INCLUDE $MONGODB_INCLUDE"
-
- cat >>confdefs.h <<\_ACEOF
--#define HAVE_LIBMIMETIC 1
-+#define HAVE_LIBMONGODB 1
- _ACEOF
-
- fi
-
-
-
--
-+# MongoDB's own library is normally static, but its supporting Boost
-+# libraries might not be by default.
-+if test -n "$MONGODB_LIBS"; then
-+ MONGODB_STATIC_LIBS="$MONGODB_LIBPATH -lmongodb $BOOST_LIBPATH $boost_fs_static_lib $BOOST_THREAD_STATIC_LIBS"
-+else
-+ MONGODB_STATIC_LIBS=
-+fi
-
- ### Restore original compiler/linker flags
- LIBS="$orig_LIBS"
-@@ -34263,16 +39407,6 @@
- fi
-
-
--## Sequence Read Archive SDK, which may be attached on either the
--## public or the internal side
--
--if test -f "${real_srcdir}/src/sra/sdk/Makefile.sra_macros.mk"; then
-- sra=sra
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_func_is_sorted=yes
-else
-- sra=
--fi
--
--
- ## `internal' project cluster
-
- if test "$with_internal" = "no" \
-@@ -34445,7 +39579,7 @@
- ;;
- esac
- done
-- for x in UUID FUSE Z LocalZ BZ2 LocalBZ2 LZO PCRE LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC; do
-+ for x in UUID FUSE Z LocalZ BZ2 LocalBZ2 LZO PCRE LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Filesystem Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP MONGODB; do
- case " $WithPackages " in
- *" $x "*) ;;
- *) WithoutPackages="$WithoutPackages$WithoutPackagesSep$x"
-@@ -34802,6 +39936,11 @@
-
-
-
-+
-+
-+
-+
-+
- #############################################################################
- ### Create output files and do some post-configuration
-
-@@ -34852,39 +39991,58 @@
-
- # The following way of writing the cache mishandles newlines in values,
- # but we know of no workaround that is simple, portable, and efficient.
--# So, don't put newlines in cache variables' values.
-+# So, we kill variables containing newlines.
- # Ultrix sh set writes to stderr and can't be redirected directly,
- # and sets the high bit in the cache file unless we assign to the vars.
--{
-+(
-+ for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
-+ eval ac_val=\$$ac_var
-+ case $ac_val in #(
-+ *${as_nl}*)
-+ case $ac_var in #(
-+ *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
-+echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
-+ esac
-+ case $ac_var in #(
-+ _ | IFS | as_nl) ;; #(
-+ *) $as_unset $ac_var ;;
-+ esac ;;
-+ esac
-+ done
-+
- (set) 2>&1 |
-- case `(ac_space=' '; set | grep ac_space) 2>&1` in
-- *ac_space=\ *)
-+ case $as_nl`(ac_space=' '; set) 2>&1` in #(
-+ *${as_nl}ac_space=\ *)
- # `set' does not quote correctly, so add quotes (double-quote
- # substitution turns \\\\ into \\, and sed turns \\ into \).
- sed -n \
- "s/'/'\\\\''/g;
- s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
-- ;;
-+ ;; #(
- *)
- # `set' quotes correctly as required by POSIX, so do not add quotes.
-- sed -n \
-- "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
-+ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
- ;;
-- esac;
--} |
-+ esac |
-+ sort
-+) |
- sed '
-+ /^ac_cv_env_/b end
- t clear
- : clear
- s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
- t end
-- /^ac_cv_env/!s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
-+ s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
- : end' >>confcache
--if diff $cache_file confcache >/dev/null 2>&1; then :; else
-- if test -w $cache_file; then
-- test "x$cache_file" != "x/dev/null" && echo "updating cache $cache_file"
-+if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
-+ if test -w "$cache_file"; then
-+ test "x$cache_file" != "x/dev/null" &&
-+ { echo "$as_me:$LINENO: updating cache $cache_file" >&5
-+echo "$as_me: updating cache $cache_file" >&6;}
- cat confcache >$cache_file
- else
-- echo "not updating unwritable cache $cache_file"
-+ { echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5
-+echo "$as_me: not updating unwritable cache $cache_file" >&6;}
- fi
- fi
- rm -f confcache
-@@ -34893,32 +40051,18 @@
- # Let make expand exec_prefix.
- test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
-
--# VPATH may cause trouble with some makes, so we remove $(srcdir),
--# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
--# trailing colons and then remove the whole line if VPATH becomes empty
--# (actually we leave an empty line to preserve line numbers).
--if test "x$srcdir" = x.; then
-- ac_vpsub='/^[ ]*VPATH[ ]*=/{
--s/:*\$(srcdir):*/:/;
--s/:*\${srcdir}:*/:/;
--s/:*@srcdir@:*/:/;
--s/^\([^=]*=[ ]*\):*/\1/;
--s/:*$//;
--s/^[^=]*=[ ]*$//;
--}'
--fi
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
-
- DEFS=-DHAVE_CONFIG_H
-
- ac_libobjs=
- ac_ltlibobjs=
- for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
- # 1. Remove the extension, and $U if already installed.
-- ac_i=`echo "$ac_i" |
-- sed 's/\$U\././;s/\.o$//;s/\.obj$//'`
-- # 2. Add them.
-- ac_libobjs="$ac_libobjs $ac_i\$U.$ac_objext"
-- ac_ltlibobjs="$ac_ltlibobjs $ac_i"'$U.lo'
-+ ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
-+ ac_i=`echo "$ac_i" | sed "$ac_script"`
-+ # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
-+ # will be set to the directory where LIBOBJS objects are built.
-+ ac_libobjs="$ac_libobjs \${LIBOBJDIR}$ac_i\$U.$ac_objext"
-+ ac_ltlibobjs="$ac_ltlibobjs \${LIBOBJDIR}$ac_i"'$U.lo'
- done
- LIBOBJS=$ac_libobjs
-
-@@ -34956,66 +40100,15 @@
- # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
- # is contrary to our usage. Disable this feature.
- alias -g '${1+"$@"}'='"$@"'
--elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
-- set -o posix
+-ncbi_cv_func_is_sorted=no
-fi
--DUALCASE=1; export DUALCASE # for MKS sh
--
--# Support unset when possible.
--if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
-- as_unset=unset
--else
-- as_unset=false
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_func_is_sorted" >&5
+-echo "${ECHO_T}$ncbi_cv_func_is_sorted" >&6
+-if test "$ncbi_cv_func_is_sorted" = yes; then
-
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_IS_SORTED 1
+-_ACEOF
-
--# Work around bugs in pre-3.0 UWIN ksh.
--$as_unset ENV MAIL MAILPATH
--PS1='$ '
--PS2='> '
--PS4='+ '
--
--# NLS nuisances.
--for as_var in \
-- LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
-- LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
-- LC_TELEPHONE LC_TIME
--do
-- if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
-- eval $as_var=C; export $as_var
-- else
-- $as_unset $as_var
-- fi
--done
--
--# Required to use basename.
--if expr a : '\(a\)' >/dev/null 2>&1; then
-- as_expr=expr
--else
-- as_expr=false
-fi
-
--if (basename /) >/dev/null 2>&1 && test "X`basename / 2>&1`" = "X/"; then
-- as_basename=basename
-+ setopt NO_GLOB_SUBST
- else
-- as_basename=false
-+ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
- fi
-+BIN_SH=xpg4; export BIN_SH # for Tru64
-+DUALCASE=1; export DUALCASE # for MKS sh
-
-
--# Name of the executable.
--as_me=`$as_basename "$0" ||
--$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
-- X"$0" : 'X\(//\)$' \| \
-- X"$0" : 'X\(/\)$' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X/"$0" |
-- sed '/^.*\/\([^/][^/]*\)\/*$/{ s//\1/; q; }
-- /^X\/\(\/\/\)$/{ s//\1/; q; }
-- /^X\/\(\/\).*/{ s//\1/; q; }
-- s/.*/./; q'`
--
-
--# PATH needs CR, and LINENO needs CR and PATH.
-+# PATH needs CR
- # Avoid depending upon Character Ranges.
- as_cr_letters='abcdefghijklmnopqrstuvwxyz'
- as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-@@ -35036,14 +40129,24 @@
- rm -f conf$$.sh
- fi
-
-+# Support unset when possible.
-+if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
-+ as_unset=unset
-+else
-+ as_unset=false
-+fi
-
-- as_lineno_1=$LINENO
-- as_lineno_2=$LINENO
-- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
-- test "x$as_lineno_1" != "x$as_lineno_2" &&
-- test "x$as_lineno_3" = "x$as_lineno_2" || {
-- # Find who we are. Look in the path if we contain no path at all
-- # relative or not.
-+
-+# IFS
-+# We need space, tab and new line, in precisely that order. Quoting is
-+# there to prevent editors from complaining about space-tab.
-+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
-+# splitting by setting IFS to empty value.)
-+as_nl='
-+'
-+IFS=" "" $as_nl"
-+
-+# Find who we are. Look in the path if we contain no directory separator.
- case $0 in
- *[\\/]* ) as_myself=$0 ;;
- *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-@@ -35053,6 +40156,7 @@
- test -z "$as_dir" && as_dir=.
- test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
- done
-+IFS=$as_save_IFS
- ;;
- esac
-@@ -35062,103 +40166,161 @@
- as_myself=$0
- fi
- if test ! -f "$as_myself"; then
-- { { echo "$as_me:$LINENO: error: cannot find myself; rerun with an absolute path" >&5
--echo "$as_me: error: cannot find myself; rerun with an absolute path" >&2;}
-- { (exit 1); exit 1; }; }
-+ echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
-+ { (exit 1); exit 1; }
- fi
-- case $CONFIG_SHELL in
-- '')
-- $as_unset ZSH_VERSION || test "${ZSH_VERSION+set}" != set || { ZSH_VERSION=; export ZSH_VERSION; }
-- for as_base in sh ksh sh5 bash; do
-- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
--for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
-+
-+# Work around bugs in pre-3.0 UWIN ksh.
-+for as_var in ENV MAIL MAILPATH
-+do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
-+done
-+PS1='$ '
-+PS2='> '
-+PS4='+ '
-+
-+# NLS nuisances.
-+for as_var in \
-+ LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
-+ LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
-+ LC_TELEPHONE LC_TIME
- do
-- IFS=$as_save_IFS
-- test -z "$as_dir" && as_dir=.
-- case $as_dir in
-- /*)
-- if ("$as_dir/$as_base" -c \
-- 'test -z "$ZSH_VERSION" && {
-+ if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
-+ eval $as_var=C; export $as_var
-+ else
-+ ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
-+ fi
-+done
-+
-+# Required to use basename.
-+if expr a : '\(a\)' >/dev/null 2>&1 &&
-+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
-+ as_expr=expr
-+else
-+ as_expr=false
-+fi
-+
-+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
-+ as_basename=basename
-+else
-+ as_basename=false
-+fi
-+
-+
-+# Name of the executable.
-+as_me=`$as_basename -- "$0" ||
-+$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
-+ X"$0" : 'X\(//\)$' \| \
-+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
-+echo X/"$0" |
-+ sed '/^.*\/\([^/][^/]*\)\/*$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\/\(\/\/\)$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\/\(\/\).*/{
-+ s//\1/
-+ q
-+ }
-+ s/.*/./; q'`
-+
-+# CDPATH.
-+$as_unset CDPATH
-+
-+
-+
- as_lineno_1=$LINENO
- as_lineno_2=$LINENO
-- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
- test "x$as_lineno_1" != "x$as_lineno_2" &&
-- test "x$as_lineno_3" = "x$as_lineno_2" ; }') 2>/dev/null
-- then
-- $as_unset BASH_ENV || test "${BASH_ENV+set}" != set || { BASH_ENV=; export BASH_ENV; }
-- $as_unset ENV || test "${ENV+set}" != set || { ENV=; export ENV; }
-- CONFIG_SHELL=$as_dir/$as_base
-- export CONFIG_SHELL
-- exec "$CONFIG_SHELL" "$0" ${1+"$@"}
-- fi;;
-- esac
-- done
--done
--;;
-- esac
-+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
-
- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
- # uniformly replaced by the line number. The first 'sed' inserts a
-- # line-number line before each line; the second 'sed' does the real
-- # work. The second script uses 'N' to pair each line-number line
-- # with the numbered line, and appends trailing '-' during
-- # substitution so that $LINENO is not a special case at line end.
-+ # line-number line after each line using $LINENO; the second 'sed'
-+ # does the real work. The second script uses 'N' to pair each
-+ # line-number line with the line containing $LINENO, and appends
-+ # trailing '-' during substitution so that $LINENO is not a special
-+ # case at line end.
- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
-- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
-- sed '=' <$as_myself |
-+ # scripts with optimization help from Paolo Bonzini. Blame Lee
-+ # E. McMahon (1931-1989) for sed's syntax. :-)
-+ sed -n '
-+ p
-+ /[$]LINENO/=
-+ ' <$as_myself |
- sed '
-+ s/[$]LINENO.*/&-/
-+ t lineno
-+ b
-+ :lineno
- N
-- s,$,-,
- : loop
-- s,^\(['$as_cr_digits']*\)\(.*\)[$]LINENO\([^'$as_cr_alnum'_]\),\1\2\1\3,
-+ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
- t loop
-- s,-$,,
-- s,^['$as_cr_digits']*\n,,
-+ s/-\n.*//
- ' >$as_me.lineno &&
-- chmod +x $as_me.lineno ||
-- { { echo "$as_me:$LINENO: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&5
--echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2;}
-+ chmod +x "$as_me.lineno" ||
-+ { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
- { (exit 1); exit 1; }; }
-
- # Don't try to exec as it changes $[0], causing all sort of problems
- # (the dirname of $[0] is not the place where we might find the
-- # original and so on. Autoconf is especially sensible to this).
-- . ./$as_me.lineno
-+ # original and so on. Autoconf is especially sensitive to this).
-+ . "./$as_me.lineno"
- # Exit status is that of the last command.
- exit
- }
-
-
--case `echo "testing\c"; echo 1,2,3`,`echo -n testing; echo 1,2,3` in
-- *c*,-n*) ECHO_N= ECHO_C='
--' ECHO_T=' ' ;;
-- *c*,* ) ECHO_N=-n ECHO_C= ECHO_T= ;;
-- *) ECHO_N= ECHO_C='\c' ECHO_T= ;;
-+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
-+ as_dirname=dirname
-+else
-+ as_dirname=false
-+fi
-+
-+ECHO_C= ECHO_N= ECHO_T=
-+case `echo -n x` in
-+-n*)
-+ case `echo 'x\c'` in
-+ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
-+ *) ECHO_C='\c';;
-+ esac;;
-+*)
-+ ECHO_N='-n';;
- esac
-
--if expr a : '\(a\)' >/dev/null 2>&1; then
-+if expr a : '\(a\)' >/dev/null 2>&1 &&
-+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
- as_expr=expr
+ echo "$as_me:$LINENO: checking for SysV semaphores" >&5
+ echo $ECHO_N "checking for SysV semaphores... $ECHO_C" >&6
+@@ -18550,7 +18501,7 @@
+ echo $ECHO_N "(cached) $ECHO_C" >&6
else
- as_expr=false
- fi
-
- rm -f conf$$ conf$$.exe conf$$.file
-+if test -d conf$$.dir; then
-+ rm -f conf$$.dir/conf$$.file
-+else
-+ rm -f conf$$.dir
-+ mkdir conf$$.dir
-+fi
- echo >conf$$.file
- if ln -s conf$$.file conf$$ 2>/dev/null; then
-- # We could just check for DJGPP; but this test a) works b) is more generic
-- # and c) will remain valid once DJGPP supports symlinks (DJGPP 2.04).
-- if test -f conf$$.exe; then
-- # Don't use ln at all; we don't have any links
-- as_ln_s='cp -p'
-- else
- as_ln_s='ln -s'
-- fi
-+ # ... but there are two gotchas:
-+ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
-+ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
-+ # In both cases, we have to default to `cp -p'.
-+ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
-+ as_ln_s='cp -p'
- elif ln conf$$.file conf$$ 2>/dev/null; then
- as_ln_s=ln
+ ncbi_cv_c_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_c_restrict" = "no" || break
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -18620,7 +18571,7 @@
+ echo $ECHO_N "(cached) $ECHO_C" >&6
else
- as_ln_s='cp -p'
- fi
--rm -f conf$$ conf$$.exe conf$$.file
-+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
-+rmdir conf$$.dir 2>/dev/null
-
- if mkdir -p . 2>/dev/null; then
- as_mkdir_p=:
-@@ -35167,7 +40329,19 @@
- as_mkdir_p=false
- fi
-
--as_executable_p="test -f"
-+# Find out whether ``test -x'' works. Don't use a zero-byte file, as
-+# systems may use methods other than mode bits to determine executability.
-+cat >conf$$.file <<_ASEOF
-+#! /bin/sh
-+exit 0
-+_ASEOF
-+chmod +x conf$$.file
-+if test -x conf$$.file >/dev/null 2>&1; then
-+ as_executable_p="test -x"
-+else
-+ as_executable_p=:
-+fi
-+rm -f conf$$.file
-
- # Sed expression to map a string onto a valid CPP name.
- as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
-@@ -35176,31 +40350,14 @@
- as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
-
-
--# IFS
--# We need space, tab and new line, in precisely that order.
--as_nl='
--'
--IFS=" $as_nl"
--
--# CDPATH.
--$as_unset CDPATH
--
- exec 6>&1
-
--# Open the log real soon, to keep \$[0] and so on meaningful, and to
-+# Save the log message, to keep $[0] and so on meaningful, and to
- # report actual input values of CONFIG_FILES etc. instead of their
--# values after options handling. Logging --version etc. is OK.
--exec 5>>config.log
--{
-- echo
-- sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
--## Running $as_me. ##
--_ASBOX
--} >&5
--cat >&5 <<_CSEOF
--
-+# values after options handling.
-+ac_log="
- This file was extended by ncbi-tools++ $as_me 0.0, which was
--generated by GNU Autoconf 2.59. Invocation command line was
-+generated by GNU Autoconf 2.60. Invocation command line was
-
- CONFIG_FILES = $CONFIG_FILES
- CONFIG_HEADERS = $CONFIG_HEADERS
-@@ -35208,30 +40365,20 @@
- CONFIG_COMMANDS = $CONFIG_COMMANDS
- $ $0 $@
-
--_CSEOF
--echo "on `(hostname || uname -n) 2>/dev/null | sed 1q`" >&5
--echo >&5
-+on `(hostname || uname -n) 2>/dev/null | sed 1q`
-+"
-+
- _ACEOF
-
-+cat >>$CONFIG_STATUS <<_ACEOF
- # Files that config.status was made for.
--if test -n "$ac_config_files"; then
-- echo "config_files=\"$ac_config_files\"" >>$CONFIG_STATUS
--fi
--
--if test -n "$ac_config_headers"; then
-- echo "config_headers=\"$ac_config_headers\"" >>$CONFIG_STATUS
--fi
--
--if test -n "$ac_config_links"; then
-- echo "config_links=\"$ac_config_links\"" >>$CONFIG_STATUS
--fi
-+config_files="$ac_config_files"
-+config_headers="$ac_config_headers"
-+config_commands="$ac_config_commands"
-
--if test -n "$ac_config_commands"; then
-- echo "config_commands=\"$ac_config_commands\"" >>$CONFIG_STATUS
--fi
-+_ACEOF
-
- cat >>$CONFIG_STATUS <<\_ACEOF
--
- ac_cs_usage="\
- \`$as_me' instantiates files from templates according to the
- current configuration.
-@@ -35258,19 +40405,21 @@
- $config_commands
-
- Report bugs to <bug-autoconf@gnu.org>."
--_ACEOF
-
-+_ACEOF
- cat >>$CONFIG_STATUS <<_ACEOF
- ac_cs_version="\\
- ncbi-tools++ config.status 0.0
--configured by $0, generated by GNU Autoconf 2.59,
-- with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
-+configured by $0, generated by GNU Autoconf 2.60,
-+ with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
-
--Copyright (C) 2003 Free Software Foundation, Inc.
-+Copyright (C) 2006 Free Software Foundation, Inc.
- This config.status script is free software; the Free Software Foundation
- gives unlimited permission to copy, distribute and modify it."
--srcdir=$srcdir
--INSTALL="$INSTALL"
-+
-+ac_pwd='$ac_pwd'
-+srcdir='$srcdir'
-+INSTALL='$INSTALL'
- _ACEOF
-
- cat >>$CONFIG_STATUS <<\_ACEOF
-@@ -35281,39 +40430,24 @@
- do
- case $1 in
- --*=*)
-- ac_option=`expr "x$1" : 'x\([^=]*\)='`
-- ac_optarg=`expr "x$1" : 'x[^=]*=\(.*\)'`
-+ ac_option=`expr "X$1" : 'X\([^=]*\)='`
-+ ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
- ac_shift=:
- ;;
-- -*)
-+ *)
- ac_option=$1
- ac_optarg=$2
- ac_shift=shift
- ;;
-- *) # This is not an option, so the user has probably given explicit
-- # arguments.
-- ac_option=$1
-- ac_need_defaults=false;;
- esac
-
- case $ac_option in
- # Handling of the options.
--_ACEOF
--cat >>$CONFIG_STATUS <<\_ACEOF
- -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
- ac_cs_recheck=: ;;
-- --version | --vers* | -V )
-- echo "$ac_cs_version"; exit 0 ;;
-- --he | --h)
-- # Conflict between --help and --header
-- { { echo "$as_me:$LINENO: error: ambiguous option: $1
--Try \`$0 --help' for more information." >&5
--echo "$as_me: error: ambiguous option: $1
--Try \`$0 --help' for more information." >&2;}
-- { (exit 1); exit 1; }; };;
-- --help | --hel | -h )
-- echo "$ac_cs_usage"; exit 0 ;;
-- --debug | --d* | -d )
-+ --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
-+ echo "$ac_cs_version"; exit ;;
-+ --debug | --debu | --deb | --de | --d | -d )
- debug=: ;;
- --file | --fil | --fi | --f )
- $ac_shift
-@@ -35323,18 +40457,24 @@
- $ac_shift
- CONFIG_HEADERS="$CONFIG_HEADERS $ac_optarg"
- ac_need_defaults=false;;
-+ --he | --h)
-+ # Conflict between --help and --header
-+ { echo "$as_me: error: ambiguous option: $1
-+Try \`$0 --help' for more information." >&2
-+ { (exit 1); exit 1; }; };;
-+ --help | --hel | -h )
-+ echo "$ac_cs_usage"; exit ;;
- -q | -quiet | --quiet | --quie | --qui | --qu | --q \
- | -silent | --silent | --silen | --sile | --sil | --si | --s)
- ac_cs_silent=: ;;
-
- # This is an error.
-- -*) { { echo "$as_me:$LINENO: error: unrecognized option: $1
--Try \`$0 --help' for more information." >&5
--echo "$as_me: error: unrecognized option: $1
--Try \`$0 --help' for more information." >&2;}
-+ -*) { echo "$as_me: error: unrecognized option: $1
-+Try \`$0 --help' for more information." >&2
- { (exit 1); exit 1; }; } ;;
-
-- *) ac_config_targets="$ac_config_targets $1" ;;
-+ *) ac_config_targets="$ac_config_targets $1"
-+ ac_need_defaults=false ;;
-
- esac
- shift
-@@ -35350,18 +40490,29 @@
- _ACEOF
- cat >>$CONFIG_STATUS <<_ACEOF
- if \$ac_cs_recheck; then
-- echo "running $SHELL $0 " $ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
-- exec $SHELL $0 $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
-+ echo "running CONFIG_SHELL=$SHELL $SHELL $0 "$ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
-+ CONFIG_SHELL=$SHELL
-+ export CONFIG_SHELL
-+ exec $SHELL "$0"$ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
- fi
-
- _ACEOF
-+cat >>$CONFIG_STATUS <<\_ACEOF
-+exec 5>>config.log
-+{
-+ echo
-+ sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
-+## Running $as_me. ##
-+_ASBOX
-+ echo "$ac_log"
-+} >&5
-
-+_ACEOF
- cat >>$CONFIG_STATUS <<_ACEOF
- #
--# INIT-COMMANDS section.
-+# INIT-COMMANDS
- #
-
--
- status_dir='$status_dir'
- builddir='$builddir'
- build_root='$build_root'
-@@ -35391,621 +40542,902 @@
-
+ ncbi_cv_cxx_restrict=no
+- for restrict in restrict __restrict__ __restrict; do
++ for restrict in __restrict__ __restrict restrict; do
+ test "$ncbi_cv_cxx_restrict" = "no" || break
+ cat >conftest.$ac_ext <<_ACEOF
+ /* confdefs.h. */
+@@ -19046,67 +18997,6 @@
_ACEOF
-+cat >>$CONFIG_STATUS <<\_ACEOF
-+
-+# Handling of arguments.
-+for ac_config_target in $ac_config_targets
-+do
-+ case $ac_config_target in
-+ "${ncbiconf}") CONFIG_HEADERS="$CONFIG_HEADERS ${ncbiconf}:src/build-system/config.h.in" ;;
-+ "$configurables") CONFIG_FILES="$CONFIG_FILES $configurables" ;;
-+ "$srcdir/./Makefile") CONFIG_FILES="$CONFIG_FILES $srcdir/./Makefile:src/build-system/Makefile.in.top" ;;
-+ "default") CONFIG_COMMANDS="$CONFIG_COMMANDS default" ;;
-+
-+ *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
-+echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
-+ { (exit 1); exit 1; }; };;
-+ esac
-+done
-+
-+
-+# If the user did not use the arguments to specify the items to instantiate,
-+# then the envvar interface is used. Set only those that are not.
-+# We use the long form for the default assignment because of an extremely
-+# bizarre bug on SunOS 4.1.3.
-+if $ac_need_defaults; then
-+ test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
-+ test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
-+ test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
-+fi
-+
-+# Have a temporary directory for convenience. Make it in the build tree
-+# simply because there is no reason against having it here, and in addition,
-+# creating and moving files from /tmp can sometimes cause problems.
-+# Hook for its removal unless debugging.
-+# Note that there is a small window in which the directory will not be cleaned:
-+# after its creation but before its name has been assigned to `$tmp'.
-+$debug ||
-+{
-+ tmp=
-+ trap 'exit_status=$?
-+ { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
-+' 0
-+ trap '{ (exit 1); exit 1; }' 1 2 13 15
-+}
-+# Create a (secure) tmp directory for tmp files.
-+
-+{
-+ tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
-+ test -n "$tmp" && test -d "$tmp"
-+} ||
-+{
-+ tmp=./conf$$-$RANDOM
-+ (umask 077 && mkdir "$tmp")
-+} ||
-+{
-+ echo "$me: cannot create a temporary directory in ." >&2
-+ { (exit 1); exit 1; }
-+}
-+
-+#
-+# Set up the sed scripts for CONFIG_FILES section.
-+#
-+
-+# No need to generate the scripts if there are no CONFIG_FILES.
-+# This happens for instance when ./config.status config.h
-+if test -n "$CONFIG_FILES"; then
-+
-+_ACEOF
-+
-+
-+
-+ac_delim='%!_!# '
-+for ac_last_try in false false false false false :; do
-+ cat >conf$$subs.sed <<_ACEOF
-+SHELL!$SHELL$ac_delim
-+PATH_SEPARATOR!$PATH_SEPARATOR$ac_delim
-+PACKAGE_NAME!$PACKAGE_NAME$ac_delim
-+PACKAGE_TARNAME!$PACKAGE_TARNAME$ac_delim
-+PACKAGE_VERSION!$PACKAGE_VERSION$ac_delim
-+PACKAGE_STRING!$PACKAGE_STRING$ac_delim
-+PACKAGE_BUGREPORT!$PACKAGE_BUGREPORT$ac_delim
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-+program_transform_name!$program_transform_name$ac_delim
-+bindir!$bindir$ac_delim
-+sbindir!$sbindir$ac_delim
-+libexecdir!$libexecdir$ac_delim
-+datarootdir!$datarootdir$ac_delim
-+datadir!$datadir$ac_delim
-+sysconfdir!$sysconfdir$ac_delim
-+sharedstatedir!$sharedstatedir$ac_delim
-+localstatedir!$localstatedir$ac_delim
-+includedir!$includedir$ac_delim
-+oldincludedir!$oldincludedir$ac_delim
-+docdir!$docdir$ac_delim
-+infodir!$infodir$ac_delim
-+htmldir!$htmldir$ac_delim
-+dvidir!$dvidir$ac_delim
-+pdfdir!$pdfdir$ac_delim
-+psdir!$psdir$ac_delim
-+libdir!$libdir$ac_delim
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-+mandir!$mandir$ac_delim
-+DEFS!$DEFS$ac_delim
-+ECHO_C!$ECHO_C$ac_delim
-+ECHO_N!$ECHO_N$ac_delim
-+ECHO_T!$ECHO_T$ac_delim
-+LIBS!$LIBS$ac_delim
-+build_alias!$build_alias$ac_delim
-+host_alias!$host_alias$ac_delim
-+target_alias!$target_alias$ac_delim
-+PROJECTS!$PROJECTS$ac_delim
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-+build_cpu!$build_cpu$ac_delim
-+build_vendor!$build_vendor$ac_delim
-+build_os!$build_os$ac_delim
-+host!$host$ac_delim
-+host_cpu!$host_cpu$ac_delim
-+host_vendor!$host_vendor$ac_delim
-+host_os!$host_os$ac_delim
-+INSTALL_PROGRAM!$INSTALL_PROGRAM$ac_delim
-+INSTALL_SCRIPT!$INSTALL_SCRIPT$ac_delim
-+INSTALL_DATA!$INSTALL_DATA$ac_delim
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-+DLL_LIB_SETTING!$DLL_LIB_SETTING$ac_delim
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-+USUAL_AND_LIB!$USUAL_AND_LIB$ac_delim
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-+EGREP!$EGREP$ac_delim
-+VALGRIND_PATH!$VALGRIND_PATH$ac_delim
-+LDD!$LDD$ac_delim
-+CXXCPP!$CXXCPP$ac_delim
-+TCHECK_CL!$TCHECK_CL$ac_delim
-+AMQ!$AMQ$ac_delim
-+CPP!$CPP$ac_delim
-+Z_INCLUDE!$Z_INCLUDE$ac_delim
-+Z_LIBS!$Z_LIBS$ac_delim
-+BZ2_INCLUDE!$BZ2_INCLUDE$ac_delim
-+BZ2_LIBS!$BZ2_LIBS$ac_delim
-+LZO_INCLUDE!$LZO_INCLUDE$ac_delim
-+LZO_LIBS!$LZO_LIBS$ac_delim
-+PCRE_INCLUDE!$PCRE_INCLUDE$ac_delim
-+PCRE_LIBS!$PCRE_LIBS$ac_delim
-+LIBGCRYPT_CONFIG!$LIBGCRYPT_CONFIG$ac_delim
-+GCRYPT_INCLUDE!$GCRYPT_INCLUDE$ac_delim
-+GCRYPT_LIBS!$GCRYPT_LIBS$ac_delim
-+LIBGNUTLS_CONFIG!$LIBGNUTLS_CONFIG$ac_delim
-+GNUTLS_INCLUDE!$GNUTLS_INCLUDE$ac_delim
-+GNUTLS_LIBS!$GNUTLS_LIBS$ac_delim
-+_ACEOF
-+
-+ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
-+ break
-+ elif $ac_last_try; then
-+ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-+echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
-+ { (exit 1); exit 1; }; }
-+ else
-+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
-+ fi
-+done
-+
-+ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
-+if test -n "$ac_eof"; then
-+ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
-+ ac_eof=`expr $ac_eof + 1`
-+fi
-+
-+cat >>$CONFIG_STATUS <<_ACEOF
-+cat >"\$tmp/subs-1.sed" <<\CEOF$ac_eof
-+/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
-+_ACEOF
-+sed '
-+s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
-+s/^/s,@/; s/!/@,|#_!!_#|/
-+:n
-+t n
-+s/'"$ac_delim"'$/,g/; t
-+s/$/\\/; p
-+N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
-+' >>$CONFIG_STATUS <conf$$subs.sed
-+rm -f conf$$subs.sed
-+cat >>$CONFIG_STATUS <<_ACEOF
-+CEOF$ac_eof
-+_ACEOF
-+
-+
-+ac_delim='%!_!# '
-+for ac_last_try in false false false false false :; do
-+ cat >conf$$subs.sed <<_ACEOF
-+OPENSSL_INCLUDE!$OPENSSL_INCLUDE$ac_delim
-+OPENSSL_LIBS!$OPENSSL_LIBS$ac_delim
-+KRB5_CONFIG!$KRB5_CONFIG$ac_delim
-+KRB5_INCLUDE!$KRB5_INCLUDE$ac_delim
-+KRB5_LIBS!$KRB5_LIBS$ac_delim
-+CURL_INCLUDE!$CURL_INCLUDE$ac_delim
-+CURL_LIBS!$CURL_LIBS$ac_delim
-+FTDS64_INCLUDE!$FTDS64_INCLUDE$ac_delim
-+FTDS64_LIBS!$FTDS64_LIBS$ac_delim
-+FTDS64_LIB!$FTDS64_LIB$ac_delim
-+FTDS64_CTLIB_INCLUDE!$FTDS64_CTLIB_INCLUDE$ac_delim
-+FTDS64_CTLIB_LIBS!$FTDS64_CTLIB_LIBS$ac_delim
-+FTDS64_CTLIB_LIB!$FTDS64_CTLIB_LIB$ac_delim
-+FTDS_INCLUDE!$FTDS_INCLUDE$ac_delim
-+FTDS_LIBS!$FTDS_LIBS$ac_delim
-+FTDS_LIB!$FTDS_LIB$ac_delim
-+freetds!$freetds$ac_delim
-+ftds64!$ftds64$ac_delim
-+mysql_config!$mysql_config$ac_delim
-+PYTHON!$PYTHON$ac_delim
-+PYTHON_INCLUDE!$PYTHON_INCLUDE$ac_delim
-+PYTHON_LIBS!$PYTHON_LIBS$ac_delim
-+PYTHON23!$PYTHON23$ac_delim
-+PYTHON23_INCLUDE!$PYTHON23_INCLUDE$ac_delim
-+PYTHON23_LIBS!$PYTHON23_LIBS$ac_delim
-+PYTHON24!$PYTHON24$ac_delim
-+PYTHON24_INCLUDE!$PYTHON24_INCLUDE$ac_delim
-+PYTHON24_LIBS!$PYTHON24_LIBS$ac_delim
-+PYTHON25!$PYTHON25$ac_delim
-+PYTHON25_INCLUDE!$PYTHON25_INCLUDE$ac_delim
-+PYTHON25_LIBS!$PYTHON25_LIBS$ac_delim
-+PERL!$PERL$ac_delim
-+_ACJNI_JAVAC!$_ACJNI_JAVAC$ac_delim
-+XMKMF!$XMKMF$ac_delim
-+X_CFLAGS!$X_CFLAGS$ac_delim
-+X_PRE_LIBS!$X_PRE_LIBS$ac_delim
-+X_LIBS!$X_LIBS$ac_delim
-+X_EXTRA_LIBS!$X_EXTRA_LIBS$ac_delim
-+wxconf!$wxconf$ac_delim
-+EXPAT_INCLUDE!$EXPAT_INCLUDE$ac_delim
-+EXPAT_LIBS!$EXPAT_LIBS$ac_delim
-+SABLOT_INCLUDE!$SABLOT_INCLUDE$ac_delim
-+SABLOT_LIBS!$SABLOT_LIBS$ac_delim
-+LIBXML_INCLUDE!$LIBXML_INCLUDE$ac_delim
-+LIBXML_LIBS!$LIBXML_LIBS$ac_delim
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-+LIBXSLT_LIBS!$LIBXSLT_LIBS$ac_delim
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-+LIBEXSLT_LIBS!$LIBEXSLT_LIBS$ac_delim
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-+OECHEM_INCLUDE!$OECHEM_INCLUDE$ac_delim
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-+SGE_INCLUDE!$SGE_INCLUDE$ac_delim
-+SGE_LIBS!$SGE_LIBS$ac_delim
-+MUPARSER_INCLUDE!$MUPARSER_INCLUDE$ac_delim
-+MUPARSER_LIBS!$MUPARSER_LIBS$ac_delim
-+HDF5_INCLUDE!$HDF5_INCLUDE$ac_delim
-+HDF5_LIBS!$HDF5_LIBS$ac_delim
-+JPEG_INCLUDE!$JPEG_INCLUDE$ac_delim
-+JPEG_LIBS!$JPEG_LIBS$ac_delim
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-+PNG_LIBS!$PNG_LIBS$ac_delim
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-+UNGIF_LIBS!$UNGIF_LIBS$ac_delim
-+GIF_INCLUDE!$GIF_INCLUDE$ac_delim
-+GIF_LIBS!$GIF_LIBS$ac_delim
-+XPM_INCLUDE!$XPM_INCLUDE$ac_delim
-+XPM_LIBS!$XPM_LIBS$ac_delim
-+freetype_config!$freetype_config$ac_delim
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-+FTGL_LIBS!$FTGL_LIBS$ac_delim
-+MAGIC_INCLUDE!$MAGIC_INCLUDE$ac_delim
-+MAGIC_LIBS!$MAGIC_LIBS$ac_delim
-+MIMETIC_INCLUDE!$MIMETIC_INCLUDE$ac_delim
-+MIMETIC_LIBS!$MIMETIC_LIBS$ac_delim
-+GSOAP_SOAPCPP2!$GSOAP_SOAPCPP2$ac_delim
-+GSOAP_WSDL2H!$GSOAP_WSDL2H$ac_delim
-+GSOAP_INCLUDE!$GSOAP_INCLUDE$ac_delim
-+GSOAP_LIBS!$GSOAP_LIBS$ac_delim
-+MONGODB_INCLUDE!$MONGODB_INCLUDE$ac_delim
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-+ncbi_runpath!$ncbi_runpath$ac_delim
-+c_ncbi_runpath!$c_ncbi_runpath$ac_delim
-+LINK!$LINK$ac_delim
-+C_LINK!$C_LINK$ac_delim
-+TAIL_N!$TAIL_N$ac_delim
-+_ACEOF
-+
-+ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
-+ break
-+ elif $ac_last_try; then
-+ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-+echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
-+ { (exit 1); exit 1; }; }
-+ else
-+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
-+ fi
-+done
-+
-+ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
-+if test -n "$ac_eof"; then
-+ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
-+ ac_eof=`expr $ac_eof + 1`
-+fi
-+
-+cat >>$CONFIG_STATUS <<_ACEOF
-+cat >"\$tmp/subs-2.sed" <<\CEOF$ac_eof
-+/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
-+_ACEOF
-+sed '
-+s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
-+s/^/s,@/; s/!/@,|#_!!_#|/
-+:n
-+t n
-+s/'"$ac_delim"'$/,g/; t
-+s/$/\\/; p
-+N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
-+' >>$CONFIG_STATUS <conf$$subs.sed
-+rm -f conf$$subs.sed
-+cat >>$CONFIG_STATUS <<_ACEOF
-+CEOF$ac_eof
-+_ACEOF
-+
-+
-+ac_delim='%!_!# '
-+for ac_last_try in false false false false false :; do
-+ cat >conf$$subs.sed <<_ACEOF
-+EGREP_Q!$EGREP_Q$ac_delim
-+LDD_R!$LDD_R$ac_delim
-+FAST_CFLAGS!$FAST_CFLAGS$ac_delim
-+FAST_CXXFLAGS!$FAST_CXXFLAGS$ac_delim
-+OBJCXX_CXXFLAGS!$OBJCXX_CXXFLAGS$ac_delim
-+DEPFLAGS!$DEPFLAGS$ac_delim
-+DEPFLAGS_POST!$DEPFLAGS_POST$ac_delim
-+FAST_LDFLAGS!$FAST_LDFLAGS$ac_delim
-+APP_LDFLAGS!$APP_LDFLAGS$ac_delim
-+DLL_LDFLAGS!$DLL_LDFLAGS$ac_delim
-+C_LIBS!$C_LIBS$ac_delim
-+OBJCXX_LIBS!$OBJCXX_LIBS$ac_delim
-+GCCPCH!$GCCPCH$ac_delim
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-+NO_STRICT_ALIASING!$NO_STRICT_ALIASING$ac_delim
-+D_SFX!$D_SFX$ac_delim
-+DEBUG_SFX!$DEBUG_SFX$ac_delim
-+LIB_OR_DLL!$LIB_OR_DLL$ac_delim
-+FORCE_STATIC_LIB!$FORCE_STATIC_LIB$ac_delim
-+APP_LIB_SETTING!$APP_LIB_SETTING$ac_delim
-+APP_LIBS_SETTING!$APP_LIBS_SETTING$ac_delim
-+LINK_DLL!$LINK_DLL$ac_delim
-+has_dll_loadable!$has_dll_loadable$ac_delim
-+LINK_LOADABLE!$LINK_LOADABLE$ac_delim
-+CFLAGS_DLL!$CFLAGS_DLL$ac_delim
-+CXXFLAGS_DLL!$CXXFLAGS_DLL$ac_delim
-+ALLOW_UNDEF!$ALLOW_UNDEF$ac_delim
-+FORBID_UNDEF!$FORBID_UNDEF$ac_delim
-+OPT_GROUPS!$OPT_GROUPS$ac_delim
-+local_lbsm!$local_lbsm$ac_delim
-+ncbi_crypt!$ncbi_crypt$ac_delim
-+CONNEXT!$CONNEXT$ac_delim
-+XCONNEXT!$XCONNEXT$ac_delim
-+serial!$serial$ac_delim
-+bdb!$bdb$ac_delim
-+dbapi!$dbapi$ac_delim
-+objects!$objects$ac_delim
-+gui!$gui$ac_delim
-+algo!$algo$ac_delim
-+app!$app$ac_delim
-+internal!$internal$ac_delim
-+check!$check$ac_delim
-+CHECK_ARG!$CHECK_ARG$ac_delim
-+CHECK_TOOLS!$CHECK_TOOLS$ac_delim
-+CHECK_TIMEOUT_MULT!$CHECK_TIMEOUT_MULT$ac_delim
-+CHECK_OS_NAME!$CHECK_OS_NAME$ac_delim
-+FEATURES!$FEATURES$ac_delim
-+script_shell!$script_shell$ac_delim
-+make_shell!$make_shell$ac_delim
-+obj_ext!$obj_ext$ac_delim
-+lib_pre!$lib_pre$ac_delim
-+lib_l_pre!$lib_l_pre$ac_delim
-+lib_ext!$lib_ext$ac_delim
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-+lib_l_ext!$lib_l_ext$ac_delim
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-+f_outlib!$f_outlib$ac_delim
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-+f_runpath!$f_runpath$ac_delim
-+f_outexe!$f_outexe$ac_delim
-+BDB_LIB!$BDB_LIB$ac_delim
-+BDB_CACHE_LIB!$BDB_CACHE_LIB$ac_delim
-+DBAPI_DRIVER!$DBAPI_DRIVER$ac_delim
-+DBAPI_CTLIB!$DBAPI_CTLIB$ac_delim
-+DBAPI_DBLIB!$DBAPI_DBLIB$ac_delim
-+DBAPI_MYSQL!$DBAPI_MYSQL$ac_delim
-+DBAPI_ODBC!$DBAPI_ODBC$ac_delim
-+THREAD_LIBS!$THREAD_LIBS$ac_delim
-+NCBIATOMIC_LIB!$NCBIATOMIC_LIB$ac_delim
-+OPENMP_FLAGS!$OPENMP_FLAGS$ac_delim
-+NETWORK_LIBS!$NETWORK_LIBS$ac_delim
-+NETWORK_PURE_LIBS!$NETWORK_PURE_LIBS$ac_delim
-+RESOLVER_LIBS!$RESOLVER_LIBS$ac_delim
-+MATH_LIBS!$MATH_LIBS$ac_delim
-+KSTAT_LIBS!$KSTAT_LIBS$ac_delim
-+RPCSVC_LIBS!$RPCSVC_LIBS$ac_delim
-+CRYPT_LIBS!$CRYPT_LIBS$ac_delim
-+DL_LIBS!$DL_LIBS$ac_delim
-+RT_LIBS!$RT_LIBS$ac_delim
-+UUID_LIBS!$UUID_LIBS$ac_delim
-+DEMANGLE_LIBS!$DEMANGLE_LIBS$ac_delim
-+ICONV_LIBS!$ICONV_LIBS$ac_delim
-+Z_LIB!$Z_LIB$ac_delim
-+BZ2_LIB!$BZ2_LIB$ac_delim
-+PCREPOSIX_LIBS!$PCREPOSIX_LIBS$ac_delim
-+PCRE_LIB!$PCRE_LIB$ac_delim
-+OPENSSL_STATIC_LIBS!$OPENSSL_STATIC_LIBS$ac_delim
-+TLS_INCLUDE!$TLS_INCLUDE$ac_delim
-+TLS_LIBS!$TLS_LIBS$ac_delim
-+SYBASE_PATH!$SYBASE_PATH$ac_delim
-+SYBASE_LCL_PATH!$SYBASE_LCL_PATH$ac_delim
-+SYBASE_INCLUDE!$SYBASE_INCLUDE$ac_delim
-+SYBASE_LIBS!$SYBASE_LIBS$ac_delim
-+SYBASE_DLLS!$SYBASE_DLLS$ac_delim
-+_ACEOF
-+
-+ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
-+ break
-+ elif $ac_last_try; then
-+ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-+echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
-+ { (exit 1); exit 1; }; }
-+ else
-+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
-+ fi
-+done
-+
-+ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
-+if test -n "$ac_eof"; then
-+ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
-+ ac_eof=`expr $ac_eof + 1`
-+fi
-+
-+cat >>$CONFIG_STATUS <<_ACEOF
-+cat >"\$tmp/subs-3.sed" <<\CEOF$ac_eof
-+/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
-+_ACEOF
-+sed '
-+s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
-+s/^/s,@/; s/!/@,|#_!!_#|/
-+:n
-+t n
-+s/'"$ac_delim"'$/,g/; t
-+s/$/\\/; p
-+N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
-+' >>$CONFIG_STATUS <conf$$subs.sed
-+rm -f conf$$subs.sed
-+cat >>$CONFIG_STATUS <<_ACEOF
-+CEOF$ac_eof
-+_ACEOF
-+
-
-+ac_delim='%!_!# '
-+for ac_last_try in false false false false false :; do
-+ cat >conf$$subs.sed <<_ACEOF
-+SYBASE_DBLIBS!$SYBASE_DBLIBS$ac_delim
-+MYSQL_INCLUDE!$MYSQL_INCLUDE$ac_delim
-+MYSQL_LIBS!$MYSQL_LIBS$ac_delim
-+BERKELEYDB_INCLUDE!$BERKELEYDB_INCLUDE$ac_delim
-+BERKELEYDB_LIBS!$BERKELEYDB_LIBS$ac_delim
-+BERKELEYDB_STATIC_LIBS!$BERKELEYDB_STATIC_LIBS$ac_delim
-+BERKELEYDB_CXX_LIBS!$BERKELEYDB_CXX_LIBS$ac_delim
-+BERKELEYDB_CXX_STATIC_LIBS!$BERKELEYDB_CXX_STATIC_LIBS$ac_delim
-+ODBC_INCLUDE!$ODBC_INCLUDE$ac_delim
-+ODBC_LIBS!$ODBC_LIBS$ac_delim
-+BOOST_INCLUDE!$BOOST_INCLUDE$ac_delim
-+BOOST_LIBPATH!$BOOST_LIBPATH$ac_delim
-+BOOST_TAG!$BOOST_TAG$ac_delim
-+BOOST_FILESYSTEM_LIBS!$BOOST_FILESYSTEM_LIBS$ac_delim
-+BOOST_FILESYSTEM_STATIC_LIBS!$BOOST_FILESYSTEM_STATIC_LIBS$ac_delim
-+BOOST_REGEX_LIBS!$BOOST_REGEX_LIBS$ac_delim
-+BOOST_REGEX_STATIC_LIBS!$BOOST_REGEX_STATIC_LIBS$ac_delim
-+BOOST_SYSTEM_LIBS!$BOOST_SYSTEM_LIBS$ac_delim
-+BOOST_SYSTEM_STATIC_LIBS!$BOOST_SYSTEM_STATIC_LIBS$ac_delim
-+BOOST_TEST_PEM_LIBS!$BOOST_TEST_PEM_LIBS$ac_delim
-+BOOST_TEST_PEM_STATIC_LIBS!$BOOST_TEST_PEM_STATIC_LIBS$ac_delim
-+BOOST_TEST_TEM_LIBS!$BOOST_TEST_TEM_LIBS$ac_delim
-+BOOST_TEST_TEM_STATIC_LIBS!$BOOST_TEST_TEM_STATIC_LIBS$ac_delim
-+BOOST_TEST_UTF_LIBS!$BOOST_TEST_UTF_LIBS$ac_delim
-+BOOST_TEST_UTF_STATIC_LIBS!$BOOST_TEST_UTF_STATIC_LIBS$ac_delim
-+BOOST_THREAD_LIBS!$BOOST_THREAD_LIBS$ac_delim
-+BOOST_THREAD_STATIC_LIBS!$BOOST_THREAD_STATIC_LIBS$ac_delim
-+NCBI_C_INCLUDE!$NCBI_C_INCLUDE$ac_delim
-+NCBI_C_LIBPATH!$NCBI_C_LIBPATH$ac_delim
-+OPENGL_INCLUDE!$OPENGL_INCLUDE$ac_delim
-+OPENGL_LIBS!$OPENGL_LIBS$ac_delim
-+OPENGL_STATIC_LIBS!$OPENGL_STATIC_LIBS$ac_delim
-+OSMESA_INCLUDE!$OSMESA_INCLUDE$ac_delim
-+OSMESA_LIBS!$OSMESA_LIBS$ac_delim
-+OSMESA_STATIC_LIBS!$OSMESA_STATIC_LIBS$ac_delim
-+GLUT_INCLUDE!$GLUT_INCLUDE$ac_delim
-+GLUT_LIBS!$GLUT_LIBS$ac_delim
-+GLEW_INCLUDE!$GLEW_INCLUDE$ac_delim
-+GLEW_LIBS!$GLEW_LIBS$ac_delim
-+GLEW_STATIC_LIBS!$GLEW_STATIC_LIBS$ac_delim
-+WXWIDGETS_INCLUDE!$WXWIDGETS_INCLUDE$ac_delim
-+WXWIDGETS_LIBS!$WXWIDGETS_LIBS$ac_delim
-+WXWIDGETS_STATIC_LIBS!$WXWIDGETS_STATIC_LIBS$ac_delim
-+WXWIDGETS_GL_LIBS!$WXWIDGETS_GL_LIBS$ac_delim
-+WXWIDGETS_GL_STATIC_LIBS!$WXWIDGETS_GL_STATIC_LIBS$ac_delim
-+WXWIDGETS_POST_LINK!$WXWIDGETS_POST_LINK$ac_delim
-+FASTCGI_INCLUDE!$FASTCGI_INCLUDE$ac_delim
-+FASTCGI_LIBS!$FASTCGI_LIBS$ac_delim
-+FASTCGI_OBJS!$FASTCGI_OBJS$ac_delim
-+NCBI_SSS_INCLUDE!$NCBI_SSS_INCLUDE$ac_delim
-+NCBI_SSS_LIBPATH!$NCBI_SSS_LIBPATH$ac_delim
-+LIBSSSUTILS!$LIBSSSUTILS$ac_delim
-+LIBSSSDB!$LIBSSSDB$ac_delim
-+sssutils!$sssutils$ac_delim
-+SP_INCLUDE!$SP_INCLUDE$ac_delim
-+SP_LIBS!$SP_LIBS$ac_delim
-+ORBACUS_INCLUDE!$ORBACUS_INCLUDE$ac_delim
-+ORBACUS_LIBPATH!$ORBACUS_LIBPATH$ac_delim
-+LIBOB!$LIBOB$ac_delim
-+LIBIMR!$LIBIMR$ac_delim
-+ICU_CONFIG!$ICU_CONFIG$ac_delim
-+ICU_INCLUDE!$ICU_INCLUDE$ac_delim
-+ICU_LIBS!$ICU_LIBS$ac_delim
-+ICU_STATIC_LIBS!$ICU_STATIC_LIBS$ac_delim
-+EXPAT_STATIC_LIBS!$EXPAT_STATIC_LIBS$ac_delim
-+SABLOT_STATIC_LIBS!$SABLOT_STATIC_LIBS$ac_delim
-+LIBXML_STATIC_LIBS!$LIBXML_STATIC_LIBS$ac_delim
-+LIBXSLT_STATIC_LIBS!$LIBXSLT_STATIC_LIBS$ac_delim
-+LIBEXSLT_STATIC_LIBS!$LIBEXSLT_STATIC_LIBS$ac_delim
-+XERCES_INCLUDE!$XERCES_INCLUDE$ac_delim
-+XERCES_LIBS!$XERCES_LIBS$ac_delim
-+XERCES_STATIC_LIBS!$XERCES_STATIC_LIBS$ac_delim
-+XALAN_INCLUDE!$XALAN_INCLUDE$ac_delim
-+XALAN_LIBS!$XALAN_LIBS$ac_delim
-+XALAN_STATIC_LIBS!$XALAN_STATIC_LIBS$ac_delim
-+ZORBA_INCLUDE!$ZORBA_INCLUDE$ac_delim
-+ZORBA_LIBS!$ZORBA_LIBS$ac_delim
-+ZORBA_STATIC_LIBS!$ZORBA_STATIC_LIBS$ac_delim
-+SQLITE3_STATIC_LIBS!$SQLITE3_STATIC_LIBS$ac_delim
-+FREETYPE_INCLUDE!$FREETYPE_INCLUDE$ac_delim
-+FREETYPE_LIBS!$FREETYPE_LIBS$ac_delim
-+GSOAP_PATH!$GSOAP_PATH$ac_delim
-+MONGODB_STATIC_LIBS!$MONGODB_STATIC_LIBS$ac_delim
-+ncbi_xreader_pubseqos!$ncbi_xreader_pubseqos$ac_delim
-+ncbi_xreader_pubseqos2!$ncbi_xreader_pubseqos2$ac_delim
-+UNLESS_PUBSEQOS!$UNLESS_PUBSEQOS$ac_delim
-+PERL_INCLUDE!$PERL_INCLUDE$ac_delim
-+PERL_LIBS!$PERL_LIBS$ac_delim
-+JDK_PATH!$JDK_PATH$ac_delim
-+JDK_INCLUDE!$JDK_INCLUDE$ac_delim
-+ncbi_java!$ncbi_java$ac_delim
-+NCBI_C_ncbi!$NCBI_C_ncbi$ac_delim
-+BINCOPY!$BINCOPY$ac_delim
-+APP_NOCOPY!$APP_NOCOPY$ac_delim
-+APP_OR_NULL!$APP_OR_NULL$ac_delim
-+IF_REBUILDING_LIBS!$IF_REBUILDING_LIBS$ac_delim
-+IF_REBUILDING_CONDITIONALLY!$IF_REBUILDING_CONDITIONALLY$ac_delim
-+_ACEOF
-
--cat >>$CONFIG_STATUS <<\_ACEOF
--for ac_config_target in $ac_config_targets
--do
-- case "$ac_config_target" in
-- # Handling of arguments.
-- "$configurables" ) CONFIG_FILES="$CONFIG_FILES $configurables" ;;
-- "$srcdir/./Makefile" ) CONFIG_FILES="$CONFIG_FILES $srcdir/./Makefile:src/build-system/Makefile.in.top" ;;
-- "default" ) CONFIG_COMMANDS="$CONFIG_COMMANDS default" ;;
-- "${ncbiconf}" ) CONFIG_HEADERS="$CONFIG_HEADERS ${ncbiconf}:src/build-system/config.h.in" ;;
-- *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
--echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
-- { (exit 1); exit 1; }; };;
-- esac
-+ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
-+ break
-+ elif $ac_last_try; then
-+ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-+echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
-+ { (exit 1); exit 1; }; }
-+ else
-+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
-+ fi
- done
-
--# If the user did not use the arguments to specify the items to instantiate,
--# then the envvar interface is used. Set only those that are not.
--# We use the long form for the default assignment because of an extremely
--# bizarre bug on SunOS 4.1.3.
--if $ac_need_defaults; then
-- test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
-- test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
-- test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
-+ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
-+if test -n "$ac_eof"; then
-+ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
-+ ac_eof=`expr $ac_eof + 1`
fi
-
--# Have a temporary directory for convenience. Make it in the build tree
--# simply because there is no reason to put it here, and in addition,
--# creating and moving files from /tmp can sometimes cause problems.
--# Create a temporary directory, and hook for its removal unless debugging.
--$debug ||
--{
-- trap 'exit_status=$?; rm -rf $tmp && exit $exit_status' 0
-- trap '{ (exit 1); exit 1; }' 1 2 13 15
--}
--
--# Create a (secure) tmp directory for tmp files.
--
--{
-- tmp=`(umask 077 && mktemp -d -q "./confstatXXXXXX") 2>/dev/null` &&
-- test -n "$tmp" && test -d "$tmp"
--} ||
--{
-- tmp=./confstat$$-$RANDOM
-- (umask 077 && mkdir $tmp)
--} ||
--{
-- echo "$me: cannot create a temporary directory in ." >&2
-- { (exit 1); exit 1; }
--}
--
-+cat >>$CONFIG_STATUS <<_ACEOF
-+cat >"\$tmp/subs-4.sed" <<\CEOF$ac_eof
-+/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
- _ACEOF
--
-+sed '
-+s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
-+s/^/s,@/; s/!/@,|#_!!_#|/
-+:n
-+t n
-+s/'"$ac_delim"'$/,g/; t
-+s/$/\\/; p
-+N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
-+' >>$CONFIG_STATUS <conf$$subs.sed
-+rm -f conf$$subs.sed
- cat >>$CONFIG_STATUS <<_ACEOF
-+CEOF$ac_eof
-+_ACEOF
-
--#
--# CONFIG_FILES section.
--#
--
--# No need to generate the scripts if there are no CONFIG_FILES.
--# This happens for instance when ./config.status config.h
--if test -n "\$CONFIG_FILES"; then
-- # Protect against being on the right side of a sed subst in config.status.
-- sed 's/,@/@@/; s/@,/@@/; s/,;t t\$/@;t t/; /@;t t\$/s/[\\\\&,]/\\\\&/g;
-- s/@@/,@/; s/@@/@,/; s/@;t t\$/,;t t/' >\$tmp/subs.sed <<\\CEOF
--s,@SHELL@,$SHELL,;t t
--s,@PATH_SEPARATOR@,$PATH_SEPARATOR,;t t
--s,@PACKAGE_NAME@,$PACKAGE_NAME,;t t
--s,@PACKAGE_TARNAME@,$PACKAGE_TARNAME,;t t
--s,@PACKAGE_VERSION@,$PACKAGE_VERSION,;t t
--s,@PACKAGE_STRING@,$PACKAGE_STRING,;t t
--s,@PACKAGE_BUGREPORT@,$PACKAGE_BUGREPORT,;t t
--s,@exec_prefix@,$exec_prefix,;t t
--s,@prefix@,$prefix,;t t
--s,@program_transform_name@,$program_transform_name,;t t
--s,@bindir@,$bindir,;t t
--s,@sbindir@,$sbindir,;t t
--s,@libexecdir@,$libexecdir,;t t
--s,@datadir@,$datadir,;t t
--s,@sysconfdir@,$sysconfdir,;t t
--s,@sharedstatedir@,$sharedstatedir,;t t
--s,@localstatedir@,$localstatedir,;t t
--s,@libdir@,$libdir,;t t
--s,@includedir@,$includedir,;t t
--s,@oldincludedir@,$oldincludedir,;t t
--s,@infodir@,$infodir,;t t
--s,@mandir@,$mandir,;t t
--s,@build_alias@,$build_alias,;t t
--s,@host_alias@,$host_alias,;t t
--s,@target_alias@,$target_alias,;t t
--s,@DEFS@,$DEFS,;t t
--s,@ECHO_C@,$ECHO_C,;t t
--s,@ECHO_N@,$ECHO_N,;t t
--s,@ECHO_T@,$ECHO_T,;t t
--s,@LIBS@,$LIBS,;t t
--s,@PROJECTS@,$PROJECTS,;t t
--s,@build@,$build,;t t
--s,@build_cpu@,$build_cpu,;t t
--s,@build_vendor@,$build_vendor,;t t
--s,@build_os@,$build_os,;t t
--s,@host@,$host,;t t
--s,@host_cpu@,$host_cpu,;t t
--s,@host_vendor@,$host_vendor,;t t
--s,@host_os@,$host_os,;t t
--s,@INSTALL_PROGRAM@,$INSTALL_PROGRAM,;t t
--s,@INSTALL_SCRIPT@,$INSTALL_SCRIPT,;t t
--s,@INSTALL_DATA@,$INSTALL_DATA,;t t
--s,@CC@,$CC,;t t
--s,@CFLAGS@,$CFLAGS,;t t
--s,@LDFLAGS@,$LDFLAGS,;t t
--s,@CPPFLAGS@,$CPPFLAGS,;t t
--s,@ac_ct_CC@,$ac_ct_CC,;t t
--s,@EXEEXT@,$EXEEXT,;t t
--s,@OBJEXT@,$OBJEXT,;t t
--s,@CXX@,$CXX,;t t
--s,@CXXFLAGS@,$CXXFLAGS,;t t
--s,@ac_ct_CXX@,$ac_ct_CXX,;t t
--s,@MT_SFX@,$MT_SFX,;t t
--s,@DLL@,$DLL,;t t
--s,@DLL_LIB_SETTING@,$DLL_LIB_SETTING,;t t
--s,@IF_WITH_DLL@,$IF_WITH_DLL,;t t
--s,@UNLESS_WITH_DLL@,$UNLESS_WITH_DLL,;t t
--s,@STATIC@,$STATIC,;t t
--s,@USUAL_AND_DLL@,$USUAL_AND_DLL,;t t
--s,@USUAL_AND_LIB@,$USUAL_AND_LIB,;t t
--s,@LN_S@,$LN_S,;t t
--s,@RANLIB@,$RANLIB,;t t
--s,@ac_ct_RANLIB@,$ac_ct_RANLIB,;t t
--s,@AR@,$AR,;t t
--s,@STRIP@,$STRIP,;t t
--s,@DISTCC@,$DISTCC,;t t
--s,@CCACHE@,$CCACHE,;t t
--s,@TAIL@,$TAIL,;t t
--s,@TOUCH@,$TOUCH,;t t
--s,@EGREP@,$EGREP,;t t
--s,@VALGRIND_PATH@,$VALGRIND_PATH,;t t
--s,@CXXCPP@,$CXXCPP,;t t
--s,@TCHECK_CL@,$TCHECK_CL,;t t
--s,@AMQ@,$AMQ,;t t
--s,@CPP@,$CPP,;t t
--s,@Z_INCLUDE@,$Z_INCLUDE,;t t
--s,@Z_LIBS@,$Z_LIBS,;t t
--s,@BZ2_INCLUDE@,$BZ2_INCLUDE,;t t
--s,@BZ2_LIBS@,$BZ2_LIBS,;t t
--s,@LZO_INCLUDE@,$LZO_INCLUDE,;t t
--s,@LZO_LIBS@,$LZO_LIBS,;t t
--s,@PCRE_INCLUDE@,$PCRE_INCLUDE,;t t
--s,@PCRE_LIBS@,$PCRE_LIBS,;t t
--s,@LIBGCRYPT_CONFIG@,$LIBGCRYPT_CONFIG,;t t
--s,@GCRYPT_INCLUDE@,$GCRYPT_INCLUDE,;t t
--s,@GCRYPT_LIBS@,$GCRYPT_LIBS,;t t
--s,@LIBGNUTLS_CONFIG@,$LIBGNUTLS_CONFIG,;t t
--s,@GNUTLS_INCLUDE@,$GNUTLS_INCLUDE,;t t
--s,@GNUTLS_LIBS@,$GNUTLS_LIBS,;t t
--s,@OPENSSL_INCLUDE@,$OPENSSL_INCLUDE,;t t
--s,@OPENSSL_LIBS@,$OPENSSL_LIBS,;t t
--s,@KRB5_CONFIG@,$KRB5_CONFIG,;t t
--s,@KRB5_INCLUDE@,$KRB5_INCLUDE,;t t
--s,@KRB5_LIBS@,$KRB5_LIBS,;t t
--s,@CURL_INCLUDE@,$CURL_INCLUDE,;t t
--s,@CURL_LIBS@,$CURL_LIBS,;t t
--s,@FTDS64_INCLUDE@,$FTDS64_INCLUDE,;t t
--s,@FTDS64_LIBS@,$FTDS64_LIBS,;t t
--s,@FTDS64_LIB@,$FTDS64_LIB,;t t
--s,@FTDS64_CTLIB_INCLUDE@,$FTDS64_CTLIB_INCLUDE,;t t
--s,@FTDS64_CTLIB_LIBS@,$FTDS64_CTLIB_LIBS,;t t
--s,@FTDS64_CTLIB_LIB@,$FTDS64_CTLIB_LIB,;t t
--s,@FTDS_INCLUDE@,$FTDS_INCLUDE,;t t
--s,@FTDS_LIBS@,$FTDS_LIBS,;t t
--s,@FTDS_LIB@,$FTDS_LIB,;t t
--s,@freetds@,$freetds,;t t
--s,@ftds64@,$ftds64,;t t
--s,@mysql_config@,$mysql_config,;t t
--s,@PYTHON@,$PYTHON,;t t
--s,@PYTHON_INCLUDE@,$PYTHON_INCLUDE,;t t
--s,@PYTHON_LIBS@,$PYTHON_LIBS,;t t
--s,@PYTHON23@,$PYTHON23,;t t
--s,@PYTHON23_INCLUDE@,$PYTHON23_INCLUDE,;t t
--s,@PYTHON23_LIBS@,$PYTHON23_LIBS,;t t
--s,@PYTHON24@,$PYTHON24,;t t
--s,@PYTHON24_INCLUDE@,$PYTHON24_INCLUDE,;t t
--s,@PYTHON24_LIBS@,$PYTHON24_LIBS,;t t
--s,@PYTHON25@,$PYTHON25,;t t
--s,@PYTHON25_INCLUDE@,$PYTHON25_INCLUDE,;t t
--s,@PYTHON25_LIBS@,$PYTHON25_LIBS,;t t
--s,@PERL@,$PERL,;t t
--s,@_ACJNI_JAVAC@,$_ACJNI_JAVAC,;t t
--s,@X_CFLAGS@,$X_CFLAGS,;t t
--s,@X_PRE_LIBS@,$X_PRE_LIBS,;t t
--s,@X_LIBS@,$X_LIBS,;t t
--s,@X_EXTRA_LIBS@,$X_EXTRA_LIBS,;t t
--s,@wxconf@,$wxconf,;t t
--s,@EXPAT_INCLUDE@,$EXPAT_INCLUDE,;t t
--s,@EXPAT_LIBS@,$EXPAT_LIBS,;t t
--s,@SABLOT_INCLUDE@,$SABLOT_INCLUDE,;t t
--s,@SABLOT_LIBS@,$SABLOT_LIBS,;t t
--s,@LIBXML_INCLUDE@,$LIBXML_INCLUDE,;t t
--s,@LIBXML_LIBS@,$LIBXML_LIBS,;t t
--s,@LIBXSLT_INCLUDE@,$LIBXSLT_INCLUDE,;t t
--s,@LIBXSLT_LIBS@,$LIBXSLT_LIBS,;t t
--s,@XSLTPROC@,$XSLTPROC,;t t
--s,@LIBEXSLT_INCLUDE@,$LIBEXSLT_INCLUDE,;t t
--s,@LIBEXSLT_LIBS@,$LIBEXSLT_LIBS,;t t
--s,@SQLITE3_INCLUDE@,$SQLITE3_INCLUDE,;t t
--s,@SQLITE3_LIBS@,$SQLITE3_LIBS,;t t
--s,@OECHEM_INCLUDE@,$OECHEM_INCLUDE,;t t
--s,@OECHEM_LIBS@,$OECHEM_LIBS,;t t
--s,@SGE_INCLUDE@,$SGE_INCLUDE,;t t
--s,@SGE_LIBS@,$SGE_LIBS,;t t
--s,@MUPARSER_INCLUDE@,$MUPARSER_INCLUDE,;t t
--s,@MUPARSER_LIBS@,$MUPARSER_LIBS,;t t
--s,@HDF5_INCLUDE@,$HDF5_INCLUDE,;t t
--s,@HDF5_LIBS@,$HDF5_LIBS,;t t
--s,@JPEG_INCLUDE@,$JPEG_INCLUDE,;t t
--s,@JPEG_LIBS@,$JPEG_LIBS,;t t
--s,@PNG_INCLUDE@,$PNG_INCLUDE,;t t
--s,@PNG_LIBS@,$PNG_LIBS,;t t
--s,@TIFF_INCLUDE@,$TIFF_INCLUDE,;t t
--s,@TIFF_LIBS@,$TIFF_LIBS,;t t
--s,@UNGIF_INCLUDE@,$UNGIF_INCLUDE,;t t
--s,@UNGIF_LIBS@,$UNGIF_LIBS,;t t
--s,@GIF_INCLUDE@,$GIF_INCLUDE,;t t
--s,@GIF_LIBS@,$GIF_LIBS,;t t
--s,@XPM_INCLUDE@,$XPM_INCLUDE,;t t
--s,@XPM_LIBS@,$XPM_LIBS,;t t
--s,@freetype_config@,$freetype_config,;t t
--s,@FTGL_INCLUDE@,$FTGL_INCLUDE,;t t
--s,@FTGL_LIBS@,$FTGL_LIBS,;t t
--s,@MAGIC_INCLUDE@,$MAGIC_INCLUDE,;t t
--s,@MAGIC_LIBS@,$MAGIC_LIBS,;t t
--s,@MIMETIC_INCLUDE@,$MIMETIC_INCLUDE,;t t
--s,@MIMETIC_LIBS@,$MIMETIC_LIBS,;t t
--s,@signature@,$signature,;t t
--s,@build_root@,$build_root,;t t
--s,@top_srcdir@,$top_srcdir,;t t
--s,@srcdir@,$srcdir,;t t
--s,@status_dir@,$status_dir,;t t
--s,@builddir@,$builddir,;t t
--s,@runpath@,$runpath,;t t
--s,@ncbi_runpath@,$ncbi_runpath,;t t
--s,@c_ncbi_runpath@,$c_ncbi_runpath,;t t
--s,@LINK@,$LINK,;t t
--s,@C_LINK@,$C_LINK,;t t
--s,@TAIL_N@,$TAIL_N,;t t
--s,@EGREP_Q@,$EGREP_Q,;t t
--s,@FAST_CFLAGS@,$FAST_CFLAGS,;t t
--s,@FAST_CXXFLAGS@,$FAST_CXXFLAGS,;t t
--s,@OBJCXX_CXXFLAGS@,$OBJCXX_CXXFLAGS,;t t
--s,@DEPFLAGS@,$DEPFLAGS,;t t
--s,@DEPFLAGS_POST@,$DEPFLAGS_POST,;t t
--s,@FAST_LDFLAGS@,$FAST_LDFLAGS,;t t
--s,@APP_LDFLAGS@,$APP_LDFLAGS,;t t
--s,@DLL_LDFLAGS@,$DLL_LDFLAGS,;t t
--s,@C_LIBS@,$C_LIBS,;t t
--s,@OBJCXX_LIBS@,$OBJCXX_LIBS,;t t
--s,@GCCPCH@,$GCCPCH,;t t
--s,@RUNPATH_ORIGIN@,$RUNPATH_ORIGIN,;t t
--s,@NO_STRICT_ALIASING@,$NO_STRICT_ALIASING,;t t
--s,@D_SFX@,$D_SFX,;t t
--s,@DEBUG_SFX@,$DEBUG_SFX,;t t
--s,@LIB_OR_DLL@,$LIB_OR_DLL,;t t
--s,@FORCE_STATIC_LIB@,$FORCE_STATIC_LIB,;t t
--s,@APP_LIB_SETTING@,$APP_LIB_SETTING,;t t
--s,@APP_LIBS_SETTING@,$APP_LIBS_SETTING,;t t
--s,@LINK_DLL@,$LINK_DLL,;t t
--s,@has_dll_loadable@,$has_dll_loadable,;t t
--s,@LINK_LOADABLE@,$LINK_LOADABLE,;t t
--s,@CFLAGS_DLL@,$CFLAGS_DLL,;t t
--s,@CXXFLAGS_DLL@,$CXXFLAGS_DLL,;t t
--s,@ALLOW_UNDEF@,$ALLOW_UNDEF,;t t
--s,@FORBID_UNDEF@,$FORBID_UNDEF,;t t
--s,@OPT_GROUPS@,$OPT_GROUPS,;t t
--s,@local_lbsm@,$local_lbsm,;t t
--s,@ncbi_crypt@,$ncbi_crypt,;t t
--s,@CONNEXT@,$CONNEXT,;t t
--s,@XCONNEXT@,$XCONNEXT,;t t
--s,@serial@,$serial,;t t
--s,@bdb@,$bdb,;t t
--s,@dbapi@,$dbapi,;t t
--s,@objects@,$objects,;t t
--s,@gui@,$gui,;t t
--s,@algo@,$algo,;t t
--s,@app@,$app,;t t
--s,@internal@,$internal,;t t
--s,@sra@,$sra,;t t
--s,@check@,$check,;t t
--s,@CHECK_ARG@,$CHECK_ARG,;t t
--s,@CHECK_TOOLS@,$CHECK_TOOLS,;t t
--s,@CHECK_TIMEOUT_MULT@,$CHECK_TIMEOUT_MULT,;t t
--s,@CHECK_OS_NAME@,$CHECK_OS_NAME,;t t
--s,@FEATURES@,$FEATURES,;t t
--s,@script_shell@,$script_shell,;t t
--s,@make_shell@,$make_shell,;t t
--s,@obj_ext@,$obj_ext,;t t
--s,@lib_pre@,$lib_pre,;t t
--s,@lib_l_pre@,$lib_l_pre,;t t
--s,@lib_ext@,$lib_ext,;t t
--s,@dll_ext@,$dll_ext,;t t
--s,@loadable_ext@,$loadable_ext,;t t
--s,@lib_l_ext@,$lib_l_ext,;t t
--s,@exe_ext@,$exe_ext,;t t
--s,@f_compile@,$f_compile,;t t
--s,@f_outobj@,$f_outobj,;t t
--s,@f_outlib@,$f_outlib,;t t
--s,@f_libpath@,$f_libpath,;t t
--s,@f_runpath@,$f_runpath,;t t
--s,@f_outexe@,$f_outexe,;t t
--s,@BDB_LIB@,$BDB_LIB,;t t
--s,@BDB_CACHE_LIB@,$BDB_CACHE_LIB,;t t
--s,@DBAPI_DRIVER@,$DBAPI_DRIVER,;t t
--s,@DBAPI_CTLIB@,$DBAPI_CTLIB,;t t
--s,@DBAPI_DBLIB@,$DBAPI_DBLIB,;t t
--s,@DBAPI_MYSQL@,$DBAPI_MYSQL,;t t
--s,@DBAPI_ODBC@,$DBAPI_ODBC,;t t
--s,@THREAD_LIBS@,$THREAD_LIBS,;t t
--s,@NCBIATOMIC_LIB@,$NCBIATOMIC_LIB,;t t
--s,@NETWORK_LIBS@,$NETWORK_LIBS,;t t
--s,@NETWORK_PURE_LIBS@,$NETWORK_PURE_LIBS,;t t
--s,@RESOLVER_LIBS@,$RESOLVER_LIBS,;t t
--s,@MATH_LIBS@,$MATH_LIBS,;t t
--s,@KSTAT_LIBS@,$KSTAT_LIBS,;t t
--s,@RPCSVC_LIBS@,$RPCSVC_LIBS,;t t
--s,@CRYPT_LIBS@,$CRYPT_LIBS,;t t
--s,@DL_LIBS@,$DL_LIBS,;t t
--s,@RT_LIBS@,$RT_LIBS,;t t
--s,@UUID_LIBS@,$UUID_LIBS,;t t
--s,@DEMANGLE_LIBS@,$DEMANGLE_LIBS,;t t
--s,@ICONV_LIBS@,$ICONV_LIBS,;t t
--s,@Z_LIB@,$Z_LIB,;t t
--s,@BZ2_LIB@,$BZ2_LIB,;t t
--s,@PCREPOSIX_LIBS@,$PCREPOSIX_LIBS,;t t
--s,@PCRE_LIB@,$PCRE_LIB,;t t
--s,@OPENSSL_STATIC_LIBS@,$OPENSSL_STATIC_LIBS,;t t
--s,@TLS_INCLUDE@,$TLS_INCLUDE,;t t
--s,@TLS_LIBS@,$TLS_LIBS,;t t
--s,@SYBASE_PATH@,$SYBASE_PATH,;t t
--s,@SYBASE_LCL_PATH@,$SYBASE_LCL_PATH,;t t
--s,@SYBASE_INCLUDE@,$SYBASE_INCLUDE,;t t
--s,@SYBASE_LIBS@,$SYBASE_LIBS,;t t
--s,@SYBASE_DLLS@,$SYBASE_DLLS,;t t
--s,@SYBASE_DBLIBS@,$SYBASE_DBLIBS,;t t
--s,@MYSQL_INCLUDE@,$MYSQL_INCLUDE,;t t
--s,@MYSQL_LIBS@,$MYSQL_LIBS,;t t
--s,@BERKELEYDB_INCLUDE@,$BERKELEYDB_INCLUDE,;t t
--s,@BERKELEYDB_LIBS@,$BERKELEYDB_LIBS,;t t
--s,@BERKELEYDB_STATIC_LIBS@,$BERKELEYDB_STATIC_LIBS,;t t
--s,@BERKELEYDB_CXX_LIBS@,$BERKELEYDB_CXX_LIBS,;t t
--s,@BERKELEYDB_CXX_STATIC_LIBS@,$BERKELEYDB_CXX_STATIC_LIBS,;t t
--s,@ODBC_INCLUDE@,$ODBC_INCLUDE,;t t
--s,@ODBC_LIBS@,$ODBC_LIBS,;t t
--s,@BOOST_INCLUDE@,$BOOST_INCLUDE,;t t
--s,@BOOST_LIBPATH@,$BOOST_LIBPATH,;t t
--s,@BOOST_TAG@,$BOOST_TAG,;t t
--s,@BOOST_REGEX_LIBS@,$BOOST_REGEX_LIBS,;t t
--s,@BOOST_REGEX_STATIC_LIBS@,$BOOST_REGEX_STATIC_LIBS,;t t
--s,@BOOST_SYSTEM_LIBS@,$BOOST_SYSTEM_LIBS,;t t
--s,@BOOST_SYSTEM_STATIC_LIBS@,$BOOST_SYSTEM_STATIC_LIBS,;t t
--s,@BOOST_TEST_PEM_LIBS@,$BOOST_TEST_PEM_LIBS,;t t
--s,@BOOST_TEST_PEM_STATIC_LIBS@,$BOOST_TEST_PEM_STATIC_LIBS,;t t
--s,@BOOST_TEST_TEM_LIBS@,$BOOST_TEST_TEM_LIBS,;t t
--s,@BOOST_TEST_TEM_STATIC_LIBS@,$BOOST_TEST_TEM_STATIC_LIBS,;t t
--s,@BOOST_TEST_UTF_LIBS@,$BOOST_TEST_UTF_LIBS,;t t
--s,@BOOST_TEST_UTF_STATIC_LIBS@,$BOOST_TEST_UTF_STATIC_LIBS,;t t
--s,@BOOST_THREAD_LIBS@,$BOOST_THREAD_LIBS,;t t
--s,@BOOST_THREAD_STATIC_LIBS@,$BOOST_THREAD_STATIC_LIBS,;t t
--s,@NCBI_C_INCLUDE@,$NCBI_C_INCLUDE,;t t
--s,@NCBI_C_LIBPATH@,$NCBI_C_LIBPATH,;t t
--s,@OPENGL_INCLUDE@,$OPENGL_INCLUDE,;t t
--s,@OPENGL_LIBS@,$OPENGL_LIBS,;t t
--s,@OPENGL_STATIC_LIBS@,$OPENGL_STATIC_LIBS,;t t
--s,@OSMESA_INCLUDE@,$OSMESA_INCLUDE,;t t
--s,@OSMESA_LIBS@,$OSMESA_LIBS,;t t
--s,@OSMESA_STATIC_LIBS@,$OSMESA_STATIC_LIBS,;t t
--s,@GLUT_INCLUDE@,$GLUT_INCLUDE,;t t
--s,@GLUT_LIBS@,$GLUT_LIBS,;t t
--s,@GLEW_INCLUDE@,$GLEW_INCLUDE,;t t
--s,@GLEW_LIBS@,$GLEW_LIBS,;t t
--s,@GLEW_STATIC_LIBS@,$GLEW_STATIC_LIBS,;t t
--s,@WXWIDGETS_INCLUDE@,$WXWIDGETS_INCLUDE,;t t
--s,@WXWIDGETS_LIBS@,$WXWIDGETS_LIBS,;t t
--s,@WXWIDGETS_STATIC_LIBS@,$WXWIDGETS_STATIC_LIBS,;t t
--s,@WXWIDGETS_GL_LIBS@,$WXWIDGETS_GL_LIBS,;t t
--s,@WXWIDGETS_GL_STATIC_LIBS@,$WXWIDGETS_GL_STATIC_LIBS,;t t
--s,@WXWIDGETS_POST_LINK@,$WXWIDGETS_POST_LINK,;t t
--s,@FASTCGI_INCLUDE@,$FASTCGI_INCLUDE,;t t
--s,@FASTCGI_LIBS@,$FASTCGI_LIBS,;t t
--s,@FASTCGI_OBJS@,$FASTCGI_OBJS,;t t
--s,@NCBI_SSS_INCLUDE@,$NCBI_SSS_INCLUDE,;t t
--s,@NCBI_SSS_LIBPATH@,$NCBI_SSS_LIBPATH,;t t
--s,@LIBSSSUTILS@,$LIBSSSUTILS,;t t
--s,@LIBSSSDB@,$LIBSSSDB,;t t
--s,@sssutils@,$sssutils,;t t
--s,@SP_INCLUDE@,$SP_INCLUDE,;t t
--s,@SP_LIBS@,$SP_LIBS,;t t
--s,@ORBACUS_INCLUDE@,$ORBACUS_INCLUDE,;t t
--s,@ORBACUS_LIBPATH@,$ORBACUS_LIBPATH,;t t
--s,@LIBOB@,$LIBOB,;t t
--s,@LIBIMR@,$LIBIMR,;t t
--s,@ICU_CONFIG@,$ICU_CONFIG,;t t
--s,@ICU_INCLUDE@,$ICU_INCLUDE,;t t
--s,@ICU_LIBS@,$ICU_LIBS,;t t
--s,@ICU_STATIC_LIBS@,$ICU_STATIC_LIBS,;t t
--s,@EXPAT_STATIC_LIBS@,$EXPAT_STATIC_LIBS,;t t
--s,@SABLOT_STATIC_LIBS@,$SABLOT_STATIC_LIBS,;t t
--s,@LIBXML_STATIC_LIBS@,$LIBXML_STATIC_LIBS,;t t
--s,@LIBXSLT_STATIC_LIBS@,$LIBXSLT_STATIC_LIBS,;t t
--s,@LIBEXSLT_STATIC_LIBS@,$LIBEXSLT_STATIC_LIBS,;t t
--s,@XERCES_INCLUDE@,$XERCES_INCLUDE,;t t
--s,@XERCES_LIBS@,$XERCES_LIBS,;t t
--s,@XERCES_STATIC_LIBS@,$XERCES_STATIC_LIBS,;t t
--s,@XALAN_INCLUDE@,$XALAN_INCLUDE,;t t
--s,@XALAN_LIBS@,$XALAN_LIBS,;t t
--s,@XALAN_STATIC_LIBS@,$XALAN_STATIC_LIBS,;t t
--s,@ZORBA_INCLUDE@,$ZORBA_INCLUDE,;t t
--s,@ZORBA_LIBS@,$ZORBA_LIBS,;t t
--s,@ZORBA_STATIC_LIBS@,$ZORBA_STATIC_LIBS,;t t
--s,@SQLITE3_STATIC_LIBS@,$SQLITE3_STATIC_LIBS,;t t
--s,@FREETYPE_INCLUDE@,$FREETYPE_INCLUDE,;t t
--s,@FREETYPE_LIBS@,$FREETYPE_LIBS,;t t
--s,@ncbi_xreader_pubseqos@,$ncbi_xreader_pubseqos,;t t
--s,@ncbi_xreader_pubseqos2@,$ncbi_xreader_pubseqos2,;t t
--s,@UNLESS_PUBSEQOS@,$UNLESS_PUBSEQOS,;t t
--s,@PERL_INCLUDE@,$PERL_INCLUDE,;t t
--s,@PERL_LIBS@,$PERL_LIBS,;t t
--s,@JDK_PATH@,$JDK_PATH,;t t
--s,@JDK_INCLUDE@,$JDK_INCLUDE,;t t
--s,@ncbi_java@,$ncbi_java,;t t
--s,@NCBI_C_ncbi@,$NCBI_C_ncbi,;t t
--s,@BINCOPY@,$BINCOPY,;t t
--s,@APP_NOCOPY@,$APP_NOCOPY,;t t
--s,@APP_OR_NULL@,$APP_OR_NULL,;t t
--s,@IF_REBUILDING_LIBS@,$IF_REBUILDING_LIBS,;t t
--s,@IF_REBUILDING_CONDITIONALLY@,$IF_REBUILDING_CONDITIONALLY,;t t
--s,@IF_DEACTIVATING@,$IF_DEACTIVATING,;t t
--s,@configurables_mfname@,$configurables_mfname,;t t
--s,@CC_FILTER@,$CC_FILTER,;t t
--s,@CXX_FILTER@,$CXX_FILTER,;t t
--s,@AR_FILTER@,$AR_FILTER,;t t
--s,@LINK_FILTER@,$LINK_FILTER,;t t
--s,@CC_WRAPPER@,$CC_WRAPPER,;t t
--s,@CXX_WRAPPER@,$CXX_WRAPPER,;t t
--s,@AR_WRAPPER@,$AR_WRAPPER,;t t
--s,@LINK_WRAPPER@,$LINK_WRAPPER,;t t
--s,@KeepStateTarget@,$KeepStateTarget,;t t
--s,@Rules@,$Rules,;t t
--s,@serial_ws50_rtti_kludge@,$serial_ws50_rtti_kludge,;t t
--s,@ncbicntr@,$ncbicntr,;t t
--s,@UNIX_SRC@,$UNIX_SRC,;t t
--s,@UNIX_USR_PROJ@,$UNIX_USR_PROJ,;t t
--s,@compiler@,$compiler,;t t
--s,@compiler_root@,$compiler_root,;t t
--s,@compiler_version@,$compiler_version,;t t
--s,@COMPILER@,$COMPILER,;t t
--s,@OSTYPE@,$OSTYPE,;t t
--s,@NCBI_PLATFORM_BITS@,$NCBI_PLATFORM_BITS,;t t
--s,@LIBOBJS@,$LIBOBJS,;t t
--s,@LTLIBOBJS@,$LTLIBOBJS,;t t
--CEOF
-
-+ac_delim='%!_!# '
-+for ac_last_try in false false false false false :; do
-+ cat >conf$$subs.sed <<_ACEOF
-+IF_DEACTIVATING!$IF_DEACTIVATING$ac_delim
-+configurables_mfname!$configurables_mfname$ac_delim
-+CC_FILTER!$CC_FILTER$ac_delim
-+CXX_FILTER!$CXX_FILTER$ac_delim
-+AR_FILTER!$AR_FILTER$ac_delim
-+LINK_FILTER!$LINK_FILTER$ac_delim
-+CC_WRAPPER!$CC_WRAPPER$ac_delim
-+CXX_WRAPPER!$CXX_WRAPPER$ac_delim
-+AR_WRAPPER!$AR_WRAPPER$ac_delim
-+LINK_WRAPPER!$LINK_WRAPPER$ac_delim
-+KeepStateTarget!$KeepStateTarget$ac_delim
-+Rules!$Rules$ac_delim
-+serial_ws50_rtti_kludge!$serial_ws50_rtti_kludge$ac_delim
-+ncbicntr!$ncbicntr$ac_delim
-+UNIX_SRC!$UNIX_SRC$ac_delim
-+UNIX_USR_PROJ!$UNIX_USR_PROJ$ac_delim
-+compiler!$compiler$ac_delim
-+compiler_root!$compiler_root$ac_delim
-+compiler_version!$compiler_version$ac_delim
-+COMPILER!$COMPILER$ac_delim
-+OSTYPE!$OSTYPE$ac_delim
-+NCBI_PLATFORM_BITS!$NCBI_PLATFORM_BITS$ac_delim
-+LIBOBJS!$LIBOBJS$ac_delim
-+LTLIBOBJS!$LTLIBOBJS$ac_delim
- _ACEOF
-
-- cat >>$CONFIG_STATUS <<\_ACEOF
-- # Split the substitutions into bite-sized pieces for seds with
-- # small command number limits, like on Digital OSF/1 and HP-UX.
-- ac_max_sed_lines=48
-- ac_sed_frag=1 # Number of current file.
-- ac_beg=1 # First line for current file.
-- ac_end=$ac_max_sed_lines # Line after last line for current file.
-- ac_more_lines=:
-- ac_sed_cmds=
-- while $ac_more_lines; do
-- if test $ac_beg -gt 1; then
-- sed "1,${ac_beg}d; ${ac_end}q" $tmp/subs.sed >$tmp/subs.frag
-- else
-- sed "${ac_end}q" $tmp/subs.sed >$tmp/subs.frag
-- fi
-- if test ! -s $tmp/subs.frag; then
-- ac_more_lines=false
-- else
-- # The purpose of the label and of the branching condition is to
-- # speed up the sed processing (if there are no `@' at all, there
-- # is no need to browse any of the substitutions).
-- # These are the two extra sed commands mentioned above.
-- (echo ':t
-- /@[a-zA-Z_][a-zA-Z_0-9]*@/!b' && cat $tmp/subs.frag) >$tmp/subs-$ac_sed_frag.sed
-- if test -z "$ac_sed_cmds"; then
-- ac_sed_cmds="sed -f $tmp/subs-$ac_sed_frag.sed"
-- else
-- ac_sed_cmds="$ac_sed_cmds | sed -f $tmp/subs-$ac_sed_frag.sed"
-- fi
-- ac_sed_frag=`expr $ac_sed_frag + 1`
-- ac_beg=$ac_end
-- ac_end=`expr $ac_end + $ac_max_sed_lines`
-+ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 24; then
-+ break
-+ elif $ac_last_try; then
-+ { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-+echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
-+ { (exit 1); exit 1; }; }
-+ else
-+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
- fi
- done
-- if test -z "$ac_sed_cmds"; then
-- ac_sed_cmds=cat
-+
-+ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
-+if test -n "$ac_eof"; then
-+ ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
-+ ac_eof=`expr $ac_eof + 1`
- fi
--fi # test -n "$CONFIG_FILES"
-
-+cat >>$CONFIG_STATUS <<_ACEOF
-+cat >"\$tmp/subs-5.sed" <<\CEOF$ac_eof
-+/@[a-zA-Z_][a-zA-Z_0-9]*@/!b end
-+_ACEOF
-+sed '
-+s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
-+s/^/s,@/; s/!/@,|#_!!_#|/
-+:n
-+t n
-+s/'"$ac_delim"'$/,g/; t
-+s/$/\\/; p
-+N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
-+' >>$CONFIG_STATUS <conf$$subs.sed
-+rm -f conf$$subs.sed
-+cat >>$CONFIG_STATUS <<_ACEOF
-+:end
-+s/|#_!!_#|//g
-+CEOF$ac_eof
- _ACEOF
-+
-+
-+# VPATH may cause trouble with some makes, so we remove $(srcdir),
-+# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
-+# trailing colons and then remove the whole line if VPATH becomes empty
-+# (actually we leave an empty line to preserve line numbers).
-+if test "x$srcdir" = x.; then
-+ ac_vpsub='/^[ ]*VPATH[ ]*=/{
-+s/:*\$(srcdir):*/:/
-+s/:*\${srcdir}:*/:/
-+s/:*@srcdir@:*/:/
-+s/^\([^=]*=[ ]*\):*/\1/
-+s/:*$//
-+s/^[^=]*=[ ]*$//
-+}'
-+fi
-+
- cat >>$CONFIG_STATUS <<\_ACEOF
--for ac_file in : $CONFIG_FILES; do test "x$ac_file" = x: && continue
-- # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
-- case $ac_file in
-- - | *:- | *:-:* ) # input from stdin
-- cat >$tmp/stdin
-- ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
-- *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
-- * ) ac_file_in=$ac_file.in ;;
-+fi # test -n "$CONFIG_FILES"
-+
-+
-+for ac_tag in :F $CONFIG_FILES :H $CONFIG_HEADERS :C $CONFIG_COMMANDS
-+do
-+ case $ac_tag in
-+ :[FHLC]) ac_mode=$ac_tag; continue;;
-+ esac
-+ case $ac_mode$ac_tag in
-+ :[FHL]*:*);;
-+ :L* | :C*:*) { { echo "$as_me:$LINENO: error: Invalid tag $ac_tag." >&5
-+echo "$as_me: error: Invalid tag $ac_tag." >&2;}
-+ { (exit 1); exit 1; }; };;
-+ :[FH]-) ac_tag=-:-;;
-+ :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
-+ esac
-+ ac_save_IFS=$IFS
-+ IFS=:
-+ set x $ac_tag
-+ IFS=$ac_save_IFS
-+ shift
-+ ac_file=$1
-+ shift
-+
-+ case $ac_mode in
-+ :L) ac_source=$1;;
-+ :[FH])
-+ ac_file_inputs=
-+ for ac_f
-+ do
-+ case $ac_f in
-+ -) ac_f="$tmp/stdin";;
-+ *) # Look for the file first in the build tree, then in the source tree
-+ # (if the path is not absolute). The absolute path cannot be DOS-style,
-+ # because $ac_f cannot contain `:'.
-+ test -f "$ac_f" ||
-+ case $ac_f in
-+ [\\/$]*) false;;
-+ *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
-+ esac ||
-+ { { echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
-+echo "$as_me: error: cannot find input file: $ac_f" >&2;}
-+ { (exit 1); exit 1; }; };;
-+ esac
-+ ac_file_inputs="$ac_file_inputs $ac_f"
-+ done
-+
-+ # Let's still pretend it is `configure' which instantiates (i.e., don't
-+ # use $as_me), people would be surprised to read:
-+ # /* config.h. Generated by config.status. */
-+ configure_input="Generated from "`IFS=:
-+ echo $* | sed 's|^[^:]*/||;s|:[^:]*/|, |g'`" by configure."
-+ if test x"$ac_file" != x-; then
-+ configure_input="$ac_file. $configure_input"
-+ { echo "$as_me:$LINENO: creating $ac_file" >&5
-+echo "$as_me: creating $ac_file" >&6;}
-+ fi
-+
-+ case $ac_tag in
-+ *:-:* | *:-) cat >"$tmp/stdin";;
-+ esac
-+ ;;
- esac
-
-- # Compute @srcdir@, @top_srcdir@, and @INSTALL@ for subdirectories.
-- ac_dir=`(dirname "$ac_file") 2>/dev/null ||
-+ ac_dir=`$as_dirname -- "$ac_file" ||
- $as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$ac_file" : 'X\(//\)[^/]' \| \
- X"$ac_file" : 'X\(//\)$' \| \
-- X"$ac_file" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
-+ X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
- echo X"$ac_file" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)[^/].*/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\).*/{
-+ s//\1/
-+ q
-+ }
- s/.*/./; q'`
-- { if $as_mkdir_p; then
-- mkdir -p "$ac_dir"
-- else
-- as_dir="$ac_dir"
-+ { as_dir="$ac_dir"
-+ case $as_dir in #(
-+ -*) as_dir=./$as_dir;;
-+ esac
-+ test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
- as_dirs=
-- while test ! -d "$as_dir"; do
-- as_dirs="$as_dir $as_dirs"
-- as_dir=`(dirname "$as_dir") 2>/dev/null ||
-+ while :; do
-+ case $as_dir in #(
-+ *\'*) as_qdir=`echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #(
-+ *) as_qdir=$as_dir;;
-+ esac
-+ as_dirs="'$as_qdir' $as_dirs"
-+ as_dir=`$as_dirname -- "$as_dir" ||
- $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$as_dir" : 'X\(//\)[^/]' \| \
- X"$as_dir" : 'X\(//\)$' \| \
-- X"$as_dir" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
-+ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
- echo X"$as_dir" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)[^/].*/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\).*/{
-+ s//\1/
-+ q
-+ }
- s/.*/./; q'`
-+ test -d "$as_dir" && break
- done
-- test ! -n "$as_dirs" || mkdir $as_dirs
-- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
--echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
-+ test -z "$as_dirs" || eval "mkdir $as_dirs"
-+ } || test -d "$as_dir" || { { echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
-+echo "$as_me: error: cannot create directory $as_dir" >&2;}
- { (exit 1); exit 1; }; }; }
-
-- #ac_builddir=. # Useless!
--ac_builddir=$builddir
--if test -n "$ac_file_in"; then
-- ac_dir_in=`(dirname "$ac_file_in") 2>/dev/null ||
--$as_expr X"$ac_file_in" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-- X"$ac_file_in" : 'X\(//\)[^/]' \| \
-- X"$ac_file_in" : 'X\(//\)$' \| \
-- X"$ac_file_in" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X"$ac_file_in" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-+ # Base source directories on path to *input* file.
-+if test -n "$ac_f"; then
-+ ac_dir_in=`$as_dirname -- "$ac_f" ||
-+$as_expr X"$ac_f" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-+ X"$ac_f" : 'X\(//\)[^/]' \| \
-+ X"$ac_f" : 'X\(//\)$' \| \
-+ X"$ac_f" : 'X\(/\)' \| . 2>/dev/null ||
-+echo X"$ac_f" |
-+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)[^/].*/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\/\)$/{
-+ s//\1/
-+ q
-+ }
-+ /^X\(\/\).*/{
-+ s//\1/
-+ q
-+ }
- s/.*/./; q'`
- else
- ac_dir_in="$ac_dir"
- fi
-
--if test $ac_dir_in != .; then
-- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[\\/],,'`
-- # A "../" for each directory in $ac_dir_suffix.
-- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
+-echo "$as_me:$LINENO: checking whether $CXX supports C++0x nullptr" >&5
+-echo $ECHO_N "checking whether $CXX supports C++0x nullptr... $ECHO_C" >&6
+-if test "${ncbi_cv_cxx_nullptr+set}" = set; then
+- echo $ECHO_N "(cached) $ECHO_C" >&6
-else
-- ac_dir_suffix= ac_top_builddir=
--fi
-+ac_builddir=.
-
--case $srcdir in
-- .) # No --srcdir option. We are building in place.
-- ac_srcdir=.
-- if test -z "$ac_top_builddir"; then
-- ac_top_srcdir=.
-- else
-- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
-- fi ;;
-- [\\/]* | ?:[\\/]* ) # Absolute path.
-- ac_srcdir=$srcdir/$ac_dir_suffix;
-- ac_top_srcdir=$srcdir ;;
-- *) # Relative path.
-- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
-- ac_top_srcdir=$ac_top_builddir$srcdir ;;
--esac
--# Do not use `cd foo && pwd` to compute absolute paths, because
--# the directories may not exist.
--case $builddir in
--.) ac_abs_builddir="$ac_dir";;
--*)
-- case "$ac_dir" in
-- .) ac_abs_builddir=$builddir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
-- *) ac_abs_builddir=$builddir/"$ac_dir";;
-- esac;;
--esac
--case $ac_abs_builddir in
--.) ac_abs_top_builddir=${ac_top_builddir}.;;
-+case "$ac_dir_in" in
-+.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
- *)
-- case ${ac_top_builddir}. in
-- .) ac_abs_top_builddir=$ac_abs_builddir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
-- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
-+ ac_dir_suffix=/`echo "$ac_dir_in" | sed 's,^\.[\\/],,'`
-+ # A ".." for each directory in $ac_dir_suffix.
-+ ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
-+ case $ac_top_builddir_sub in
-+ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
-+ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
- esac;;
- esac
-+ac_abs_top_builddir=$ac_pwd
-+ac_abs_builddir=$ac_pwd$ac_dir_suffix
-+# for backward compatibility:
-+ac_top_builddir=$ac_top_build_prefix
-+
-+case $srcdir in
-+ .) # We are building in place.
-+ ac_srcdir=.
-+ ac_top_srcdir=$ac_top_builddir_sub
-+ ac_abs_top_srcdir=$ac_pwd ;;
-+ [\\/]* | ?:[\\/]* ) # Absolute name.
-+ ac_srcdir=$srcdir$ac_dir_suffix;
-+ ac_top_srcdir=$srcdir
-+ ac_abs_top_srcdir=$srcdir ;;
-+ *) # Relative name.
-+ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
-+ ac_top_srcdir=$ac_top_build_prefix$srcdir
-+ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
-+esac
-+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
-+
-+
- case $ac_dir_in in
- .) ac_abs_top_srcdir=$real_srcdir;;
- *)
-@@ -36015,66 +41447,55 @@
- *) ac_abs_top_srcdir=$ac_dir_in/$real_srcdir;;
- esac;;
- esac
--case $ac_abs_top_srcdir in
--.) ac_abs_srcdir=$ac_dir_suffix;;
--*)
-- case $ac_dir_suffix in
-- .) ac_abs_srcdir=$ac_abs_top_srcdir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_dir_suffix;;
-- *) ac_abs_srcdir=$ac_abs_top_srcdir/$ac_dir_suffix;;
-- esac;;
--esac
-+ac_builddir=$builddir
-
-
-+ case $ac_mode in
-+ :F)
-+ #
-+ # CONFIG_FILE
-+ #
-+
- case $INSTALL in
- [\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
-- *) ac_INSTALL=$ac_top_builddir$INSTALL ;;
-+ *) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
- esac
-+_ACEOF
-
-- if test x"$ac_file" != x-; then
-- { echo "$as_me:$LINENO: creating $ac_file" >&5
--echo "$as_me: creating $ac_file" >&6;}
-- rm -f "$ac_file"
-- fi
-- # Let's still pretend it is `configure' which instantiates (i.e., don't
-- # use $as_me), people would be surprised to read:
-- # /* config.h. Generated by config.status. */
-- if test x"$ac_file" = x-; then
-- configure_input=
-- else
-- configure_input="$ac_file. "
-- fi
-- configure_input=$configure_input"Generated from `echo $ac_file_in |
-- sed 's,.*/,,'` by configure."
--
-- # First look for the input files in the build tree, otherwise in the
-- # src tree.
-- ac_file_inputs=`IFS=:
-- for f in $ac_file_in; do
-- case $f in
-- -) echo $tmp/stdin ;;
-- [\\/$]*)
-- # Absolute (can't be DOS-style, as IFS=:)
-- test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
--echo "$as_me: error: cannot find input file: $f" >&2;}
-- { (exit 1); exit 1; }; }
-- echo "$f";;
-- *) # Relative
-- if test -f "$f"; then
-- # Build tree
-- echo "$f"
-- elif test -f "$srcdir/$f"; then
-- # Source tree
-- echo "$srcdir/$f"
-- else
-- # /dev/null tree
-- { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
--echo "$as_me: error: cannot find input file: $f" >&2;}
-- { (exit 1); exit 1; }; }
-- fi;;
-+cat >>$CONFIG_STATUS <<\_ACEOF
-+# If the template does not know about datarootdir, expand it.
-+# FIXME: This hack should be removed a few years after 2.60.
-+ac_datarootdir_hack=; ac_datarootdir_seen=
-+
-+case `sed -n '/datarootdir/ {
-+ p
-+ q
-+}
-+/@datadir@/p
-+/@docdir@/p
-+/@infodir@/p
-+/@localedir@/p
-+/@mandir@/p
-+' $ac_file_inputs` in
-+*datarootdir*) ac_datarootdir_seen=yes;;
-+*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
-+ { echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
-+echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
-+_ACEOF
-+cat >>$CONFIG_STATUS <<_ACEOF
-+ ac_datarootdir_hack='
-+ s&@datadir@&$datadir&g
-+ s&@docdir@&$docdir&g
-+ s&@infodir@&$infodir&g
-+ s&@localedir@&$localedir&g
-+ s&@mandir@&$mandir&g
-+ s&\\\${datarootdir}&$datarootdir&g' ;;
- esac
-- done` || { (exit 1); exit 1; }
- _ACEOF
-+
-+# Neutralize VPATH when `$srcdir' = `.'.
-+# Shell code in configure.ac might set extrasub.
-+# FIXME: do we really want to maintain this feature?
- cat >>$CONFIG_STATUS <<_ACEOF
- sed "$ac_vpsub
- $extrasub
-@@ -36082,381 +41503,140 @@
- cat >>$CONFIG_STATUS <<\_ACEOF
- :t
- /@[a-zA-Z_][a-zA-Z_0-9]*@/!b
--s,@configure_input@,$configure_input,;t t
--s,@srcdir@,$ac_srcdir,;t t
--s,@abs_srcdir@,$ac_abs_srcdir,;t t
--s,@top_srcdir@,$ac_top_srcdir,;t t
--s,@abs_top_srcdir@,$ac_abs_top_srcdir,;t t
--s,@builddir@,$ac_builddir,;t t
--s,@abs_builddir@,$ac_abs_builddir,;t t
--s,@top_builddir@,$ac_top_builddir,;t t
--s,@abs_top_builddir@,$ac_abs_top_builddir,;t t
--s,@INSTALL@,$ac_INSTALL,;t t
--" $ac_file_inputs | (eval "$ac_sed_cmds") >$tmp/out
-- rm -f $tmp/stdin
-- if test x"$ac_file" != x-; then
-- mv $tmp/out $ac_file
-- else
-- cat $tmp/out
-- rm -f $tmp/out
-- fi
--
--done
--_ACEOF
--cat >>$CONFIG_STATUS <<\_ACEOF
-+s&@configure_input@&$configure_input&;t t
-+s&@top_builddir@&$ac_top_builddir_sub&;t t
-+s&@srcdir@&$ac_srcdir&;t t
-+s&@abs_srcdir@&$ac_abs_srcdir&;t t
-+s&@top_srcdir@&$ac_top_srcdir&;t t
-+s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
-+s&@builddir@&$ac_builddir&;t t
-+s&@abs_builddir@&$ac_abs_builddir&;t t
-+s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
-+s&@INSTALL@&$ac_INSTALL&;t t
-+$ac_datarootdir_hack
-+" $ac_file_inputs | sed -f "$tmp/subs-1.sed" | sed -f "$tmp/subs-2.sed" | sed -f "$tmp/subs-3.sed" | sed -f "$tmp/subs-4.sed" | sed -f "$tmp/subs-5.sed" >$tmp/out
-+
-+test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
-+ { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
-+ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
-+ { echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-+which seems to be undefined. Please make sure it is defined." >&5
-+echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-+which seems to be undefined. Please make sure it is defined." >&2;}
-
-+ rm -f "$tmp/stdin"
-+ case $ac_file in
-+ -) cat "$tmp/out"; rm -f "$tmp/out";;
-+ *) rm -f "$ac_file"; mv "$tmp/out" $ac_file;;
-+ esac
-+ ;;
-+ :H)
- #
--# CONFIG_HEADER section.
-+ # CONFIG_HEADER
- #
-+_ACEOF
-
--# These sed commands are passed to sed as "A NAME B NAME C VALUE D", where
--# NAME is the cpp macro being defined and VALUE is the value it is being given.
--#
--# ac_d sets the value in "#define NAME VALUE" lines.
--ac_dA='s,^\([ ]*\)#\([ ]*define[ ][ ]*\)'
--ac_dB='[ ].*$,\1#\2'
-+# Transform confdefs.h into a sed script `conftest.defines', that
-+# substitutes the proper values into config.h.in to produce config.h.
-+rm -f conftest.defines conftest.tail
-+# First, append a space to every undef/define line, to ease matching.
-+echo 's/$/ /' >conftest.defines
-+# Then, protect against being on the right side of a sed subst, or in
-+# an unquoted here document, in config.status. If some macros were
-+# called several times there might be several #defines for the same
-+# symbol, which is useless. But do not sort them, since the last
-+# AC_DEFINE must be honored.
-+ac_word_re=[_$as_cr_Letters][_$as_cr_alnum]*
-+# These sed commands are passed to sed as "A NAME B PARAMS C VALUE D", where
-+# NAME is the cpp macro being defined, VALUE is the value it is being given.
-+# PARAMS is the parameter list in the macro definition--in most cases, it's
-+# just an empty string.
-+ac_dA='s,^\\([ #]*\\)[^ ]*\\([ ]*'
-+ac_dB='\\)[ (].*,\\1define\\2'
- ac_dC=' '
--ac_dD=',;t'
--# ac_u turns "#undef NAME" without trailing blanks into "#define NAME VALUE".
--ac_uA='s,^\([ ]*\)#\([ ]*\)undef\([ ][ ]*\)'
--ac_uB='$,\1#\2define\3'
--ac_uC=' '
--ac_uD=',;t'
-+ac_dD=' ,'
-
--for ac_file in : $CONFIG_HEADERS; do test "x$ac_file" = x: && continue
-- # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
-- case $ac_file in
-- - | *:- | *:-:* ) # input from stdin
-- cat >$tmp/stdin
-- ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
-- *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
-- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
-- * ) ac_file_in=$ac_file.in ;;
-- esac
--
-- test x"$ac_file" != x- && { echo "$as_me:$LINENO: creating $ac_file" >&5
--echo "$as_me: creating $ac_file" >&6;}
--
-- # First look for the input files in the build tree, otherwise in the
-- # src tree.
-- ac_file_inputs=`IFS=:
-- for f in $ac_file_in; do
-- case $f in
-- -) echo $tmp/stdin ;;
-- [\\/$]*)
-- # Absolute (can't be DOS-style, as IFS=:)
-- test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
--echo "$as_me: error: cannot find input file: $f" >&2;}
-- { (exit 1); exit 1; }; }
-- # Do quote $f, to prevent DOS paths from being IFS'd.
-- echo "$f";;
-- *) # Relative
-- if test -f "$f"; then
-- # Build tree
-- echo "$f"
-- elif test -f "$srcdir/$f"; then
-- # Source tree
-- echo "$srcdir/$f"
-- else
-- # /dev/null tree
-- { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
--echo "$as_me: error: cannot find input file: $f" >&2;}
-- { (exit 1); exit 1; }; }
-- fi;;
-- esac
-- done` || { (exit 1); exit 1; }
-- # Remove the trailing spaces.
-- sed 's/[ ]*$//' $ac_file_inputs >$tmp/in
--
+- cat >conftest.$ac_ext <<_ACEOF
+-/* confdefs.h. */
-_ACEOF
+-cat confdefs.h >>conftest.$ac_ext
+-cat >>conftest.$ac_ext <<_ACEOF
+-/* end confdefs.h. */
-
--# Transform confdefs.h into two sed scripts, `conftest.defines' and
--# `conftest.undefs', that substitutes the proper values into
--# config.h.in to produce config.h. The first handles `#define'
--# templates, and the second `#undef' templates.
--# And first: Protect against being on the right side of a sed subst in
--# config.status. Protect against being in an unquoted here document
--# in config.status.
--rm -f conftest.defines conftest.undefs
--# Using a here document instead of a string reduces the quoting nightmare.
--# Putting comments in sed scripts is not portable.
--#
--# `end' is used to avoid that the second main sed command (meant for
--# 0-ary CPP macros) applies to n-ary macro definitions.
--# See the Autoconf documentation for `clear'.
--cat >confdef2sed.sed <<\_ACEOF
-+uniq confdefs.h |
-+ sed -n '
-+ t rset
-+ :rset
-+ s/^[ ]*#[ ]*define[ ][ ]*//
-+ t ok
-+ d
-+ :ok
- s/[\\&,]/\\&/g
--s,[\\$`],\\&,g
--t clear
--: clear
--s,^[ ]*#[ ]*define[ ][ ]*\([^ (][^ (]*\)\(([^)]*)\)[ ]*\(.*\)$,${ac_dA}\1${ac_dB}\1\2${ac_dC}\3${ac_dD},gp
--t end
--s,^[ ]*#[ ]*define[ ][ ]*\([^ ][^ ]*\)[ ]*\(.*\)$,${ac_dA}\1${ac_dB}\1${ac_dC}\2${ac_dD},gp
--: end
--_ACEOF
--# If some macros were called several times there might be several times
--# the same #defines, which is useless. Nevertheless, we may not want to
--# sort them, since we want the *last* AC-DEFINE to be honored.
--uniq confdefs.h | sed -n -f confdef2sed.sed >conftest.defines
--sed 's/ac_d/ac_u/g' conftest.defines >conftest.undefs
--rm -f confdef2sed.sed
-+ s/^\('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/ '"$ac_dA"'\1'"$ac_dB"'\2'"${ac_dC}"'\3'"$ac_dD"'/p
-+ s/^\('"$ac_word_re"'\)[ ]*\(.*\)/'"$ac_dA"'\1'"$ac_dB$ac_dC"'\2'"$ac_dD"'/p
-+ ' >>conftest.defines
-
--# This sed command replaces #undef with comments. This is necessary, for
-+# Remove the space that was appended to ease matching.
-+# Then replace #undef with comments. This is necessary, for
- # example, in the case of _POSIX_SOURCE, which is predefined and required
- # on some systems where configure will not decide to define it.
--cat >>conftest.undefs <<\_ACEOF
--s,^[ ]*#[ ]*undef[ ][ ]*[a-zA-Z_][a-zA-Z_0-9]*,/* & */,
+-int
+-main ()
+-{
+-void * p = nullptr;
+- ;
+- return 0;
+-}
-_ACEOF
-+# (The regexp can be short, since the line contains either #define or #undef.)
-+echo 's/ $//
-+s,^[ #]*u.*,/* & */,' >>conftest.defines
-+
-+# Break up conftest.defines:
-+ac_max_sed_lines=50
-+
-+# First sed command is: sed -f defines.sed $ac_file_inputs >"$tmp/out1"
-+# Second one is: sed -f defines.sed "$tmp/out1" >"$tmp/out2"
-+# Third one will be: sed -f defines.sed "$tmp/out2" >"$tmp/out1"
-+# et cetera.
-+ac_in='$ac_file_inputs'
-+ac_out='"$tmp/out1"'
-+ac_nxt='"$tmp/out2"'
-
--# Break up conftest.defines because some shells have a limit on the size
--# of here documents, and old seds have small limits too (100 cmds).
--echo ' # Handle all the #define templates only if necessary.' >>$CONFIG_STATUS
--echo ' if grep "^[ ]*#[ ]*define" $tmp/in >/dev/null; then' >>$CONFIG_STATUS
--echo ' # If there are no defines, we may have an empty if/fi' >>$CONFIG_STATUS
--echo ' :' >>$CONFIG_STATUS
--rm -f conftest.tail
--while grep . conftest.defines >/dev/null
--do
-- # Write a limited-size here document to $tmp/defines.sed.
-- echo ' cat >$tmp/defines.sed <<CEOF' >>$CONFIG_STATUS
-- # Speed up: don't consider the non `#define' lines.
-- echo '/^[ ]*#[ ]*define/!b' >>$CONFIG_STATUS
-- # Work around the forget-to-reset-the-flag bug.
-- echo 't clr' >>$CONFIG_STATUS
-- echo ': clr' >>$CONFIG_STATUS
-- sed ${ac_max_here_lines}q conftest.defines >>$CONFIG_STATUS
-+while :
-+do
-+ # Write a here document:
-+ cat >>$CONFIG_STATUS <<_ACEOF
-+ # First, check the format of the line:
-+ cat >"\$tmp/defines.sed" <<\\CEOF
-+/^[ ]*#[ ]*undef[ ][ ]*$ac_word_re[ ]*\$/b def
-+/^[ ]*#[ ]*define[ ][ ]*$ac_word_re[( ]/b def
-+b
-+:def
-+_ACEOF
-+ sed ${ac_max_sed_lines}q conftest.defines >>$CONFIG_STATUS
- echo 'CEOF
-- sed -f $tmp/defines.sed $tmp/in >$tmp/out
-- rm -f $tmp/in
-- mv $tmp/out $tmp/in
--' >>$CONFIG_STATUS
-- sed 1,${ac_max_here_lines}d conftest.defines >conftest.tail
-+ sed -f "$tmp/defines.sed"' "$ac_in >$ac_out" >>$CONFIG_STATUS
-+ ac_in=$ac_out; ac_out=$ac_nxt; ac_nxt=$ac_in
-+ sed 1,${ac_max_sed_lines}d conftest.defines >conftest.tail
-+ grep . conftest.tail >/dev/null || break
- rm -f conftest.defines
- mv conftest.tail conftest.defines
- done
--rm -f conftest.defines
--echo ' fi # grep' >>$CONFIG_STATUS
--echo >>$CONFIG_STATUS
+-rm -f conftest.$ac_objext
+-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+- (eval $ac_compile) 2>conftest.er1
+- ac_status=$?
+- grep -v '^ *+' conftest.er1 >conftest.err
+- rm -f conftest.er1
+- cat conftest.err >&5
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); } &&
+- { ac_try='test -z "$ac_cxx_werror_flag"
+- || test ! -s conftest.err'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; } &&
+- { ac_try='test -s conftest.$ac_objext'
+- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
+- (eval $ac_try) 2>&5
+- ac_status=$?
+- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+- (exit $ac_status); }; }; then
+- ncbi_cv_cxx_nullptr=yes
+-else
+- echo "$as_me: failed program was:" >&5
+-sed 's/^/| /' conftest.$ac_ext >&5
-
--# Break up conftest.undefs because some shells have a limit on the size
--# of here documents, and old seds have small limits too (100 cmds).
--echo ' # Handle all the #undef templates' >>$CONFIG_STATUS
--rm -f conftest.tail
--while grep . conftest.undefs >/dev/null
--do
-- # Write a limited-size here document to $tmp/undefs.sed.
-- echo ' cat >$tmp/undefs.sed <<CEOF' >>$CONFIG_STATUS
-- # Speed up: don't consider the non `#undef'
-- echo '/^[ ]*#[ ]*undef/!b' >>$CONFIG_STATUS
-- # Work around the forget-to-reset-the-flag bug.
-- echo 't clr' >>$CONFIG_STATUS
-- echo ': clr' >>$CONFIG_STATUS
-- sed ${ac_max_here_lines}q conftest.undefs >>$CONFIG_STATUS
-- echo 'CEOF
-- sed -f $tmp/undefs.sed $tmp/in >$tmp/out
-- rm -f $tmp/in
-- mv $tmp/out $tmp/in
--' >>$CONFIG_STATUS
-- sed 1,${ac_max_here_lines}d conftest.undefs >conftest.tail
-- rm -f conftest.undefs
-- mv conftest.tail conftest.undefs
--done
--rm -f conftest.undefs
-+rm -f conftest.defines conftest.tail
-
-+echo "ac_result=$ac_in" >>$CONFIG_STATUS
- cat >>$CONFIG_STATUS <<\_ACEOF
-- # Let's still pretend it is `configure' which instantiates (i.e., don't
-- # use $as_me), people would be surprised to read:
-- # /* config.h. Generated by config.status. */
-- if test x"$ac_file" = x-; then
-- echo "/* Generated by configure. */" >$tmp/config.h
-- else
-- echo "/* $ac_file. Generated by configure. */" >$tmp/config.h
-- fi
-- cat $tmp/in >>$tmp/config.h
-- rm -f $tmp/in
- if test x"$ac_file" != x-; then
-- if diff $ac_file $tmp/config.h >/dev/null 2>&1; then
-+ echo "/* $configure_input */" >"$tmp/config.h"
-+ cat "$ac_result" >>"$tmp/config.h"
-+ if diff $ac_file "$tmp/config.h" >/dev/null 2>&1; then
- { echo "$as_me:$LINENO: $ac_file is unchanged" >&5
- echo "$as_me: $ac_file is unchanged" >&6;}
- else
-- ac_dir=`(dirname "$ac_file") 2>/dev/null ||
--$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-- X"$ac_file" : 'X\(//\)[^/]' \| \
-- X"$ac_file" : 'X\(//\)$' \| \
-- X"$ac_file" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X"$ac_file" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-- s/.*/./; q'`
-- { if $as_mkdir_p; then
-- mkdir -p "$ac_dir"
-- else
-- as_dir="$ac_dir"
-- as_dirs=
-- while test ! -d "$as_dir"; do
-- as_dirs="$as_dir $as_dirs"
-- as_dir=`(dirname "$as_dir") 2>/dev/null ||
--$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-- X"$as_dir" : 'X\(//\)[^/]' \| \
-- X"$as_dir" : 'X\(//\)$' \| \
-- X"$as_dir" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X"$as_dir" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-- s/.*/./; q'`
-- done
-- test ! -n "$as_dirs" || mkdir $as_dirs
-- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
--echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
-- { (exit 1); exit 1; }; }; }
+-ncbi_cv_cxx_nullptr=no
+-fi
+-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+-fi
+-echo "$as_me:$LINENO: result: $ncbi_cv_cxx_nullptr" >&5
+-echo "${ECHO_T}$ncbi_cv_cxx_nullptr" >&6
+-if test "$ncbi_cv_cxx_nullptr" = yes; then
-
- rm -f $ac_file
-- mv $tmp/config.h $ac_file
-- fi
-- else
-- cat $tmp/config.h
-- rm -f $tmp/config.h
-- fi
--done
+-cat >>confdefs.h <<\_ACEOF
+-#define HAVE_NULLPTR 1
-_ACEOF
--cat >>$CONFIG_STATUS <<\_ACEOF
-
--#
--# CONFIG_COMMANDS section.
--#
--for ac_file in : $CONFIG_COMMANDS; do test "x$ac_file" = x: && continue
-- ac_dest=`echo "$ac_file" | sed 's,:.*,,'`
-- ac_source=`echo "$ac_file" | sed 's,[^:]*:,,'`
-- ac_dir=`(dirname "$ac_dest") 2>/dev/null ||
--$as_expr X"$ac_dest" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-- X"$ac_dest" : 'X\(//\)[^/]' \| \
-- X"$ac_dest" : 'X\(//\)$' \| \
-- X"$ac_dest" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X"$ac_dest" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-- s/.*/./; q'`
-- { if $as_mkdir_p; then
-- mkdir -p "$ac_dir"
-- else
-- as_dir="$ac_dir"
-- as_dirs=
-- while test ! -d "$as_dir"; do
-- as_dirs="$as_dir $as_dirs"
-- as_dir=`(dirname "$as_dir") 2>/dev/null ||
--$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-- X"$as_dir" : 'X\(//\)[^/]' \| \
-- X"$as_dir" : 'X\(//\)$' \| \
-- X"$as_dir" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X"$as_dir" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-- s/.*/./; q'`
-- done
-- test ! -n "$as_dirs" || mkdir $as_dirs
-- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
--echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
-- { (exit 1); exit 1; }; }; }
--
-- #ac_builddir=. # Useless!
--ac_builddir=$builddir
--if test -n "$ac_file_in"; then
-- ac_dir_in=`(dirname "$ac_file_in") 2>/dev/null ||
--$as_expr X"$ac_file_in" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-- X"$ac_file_in" : 'X\(//\)[^/]' \| \
-- X"$ac_file_in" : 'X\(//\)$' \| \
-- X"$ac_file_in" : 'X\(/\)' \| \
-- . : '\(.\)' 2>/dev/null ||
--echo X"$ac_file_in" |
-- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
-- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
-- /^X\(\/\/\)$/{ s//\1/; q; }
-- /^X\(\/\).*/{ s//\1/; q; }
-- s/.*/./; q'`
--else
-- ac_dir_in="$ac_dir"
-+ mv "$tmp/config.h" $ac_file
- fi
--
--if test $ac_dir_in != .; then
-- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[\\/],,'`
-- # A "../" for each directory in $ac_dir_suffix.
-- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
- else
-- ac_dir_suffix= ac_top_builddir=
-+ echo "/* $configure_input */"
-+ cat "$ac_result"
- fi
-+ rm -f "$tmp/out12"
-+ ;;
-
--case $srcdir in
-- .) # No --srcdir option. We are building in place.
-- ac_srcdir=.
-- if test -z "$ac_top_builddir"; then
-- ac_top_srcdir=.
-- else
-- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
-- fi ;;
-- [\\/]* | ?:[\\/]* ) # Absolute path.
-- ac_srcdir=$srcdir/$ac_dir_suffix;
-- ac_top_srcdir=$srcdir ;;
-- *) # Relative path.
-- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
-- ac_top_srcdir=$ac_top_builddir$srcdir ;;
--esac
--# Do not use `cd foo && pwd` to compute absolute paths, because
--# the directories may not exist.
--case $builddir in
--.) ac_abs_builddir="$ac_dir";;
--*)
-- case "$ac_dir" in
-- .) ac_abs_builddir=$builddir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
-- *) ac_abs_builddir=$builddir/"$ac_dir";;
-- esac;;
--esac
--case $ac_abs_builddir in
--.) ac_abs_top_builddir=${ac_top_builddir}.;;
--*)
-- case ${ac_top_builddir}. in
-- .) ac_abs_top_builddir=$ac_abs_builddir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
-- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
-- esac;;
--esac
--case $ac_dir_in in
--.) ac_abs_top_srcdir=$real_srcdir;;
--*)
-- case $real_srcdir in
-- .) ac_abs_top_srcdir=$ac_dir_in;;
-- [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$real_srcdir;;
-- *) ac_abs_top_srcdir=$ac_dir_in/$real_srcdir;;
-- esac;;
--esac
--case $ac_abs_top_srcdir in
--.) ac_abs_srcdir=$ac_dir_suffix;;
--*)
-- case $ac_dir_suffix in
-- .) ac_abs_srcdir=$ac_abs_top_srcdir;;
-- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_dir_suffix;;
-- *) ac_abs_srcdir=$ac_abs_top_srcdir/$ac_dir_suffix;;
-- esac;;
-+ :C) { echo "$as_me:$LINENO: executing $ac_file commands" >&5
-+echo "$as_me: executing $ac_file commands" >&6;}
-+ ;;
- esac
-
-
-- { echo "$as_me:$LINENO: executing $ac_dest commands" >&5
--echo "$as_me: executing $ac_dest commands" >&6;}
-- case $ac_dest in
-- default )
-+ case $ac_file$ac_mode in
-+ "default":C)
- find "$build_root/." -name '*.sh' -print | while read x_file ; do
- chmod a+x "$x_file"
- done
-@@ -36601,7 +41781,9 @@
-
- cat << EOCONF
- ===============================================================================
--NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running
-+NCBI C++ Toolkit documentation:
-+ Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
-+ Local: ./doc/public/index.html
- For the available configuration flags run: ./configure --help
-
- CFLAGS = $CFLAGS
-@@ -36628,11 +41810,10 @@
- ******* CONFIGURATION SUCCESSFUL *******
- EOCONF
- ;;
-+
- esac
--done
--_ACEOF
-+done # for ac_tag
-
--cat >>$CONFIG_STATUS <<\_ACEOF
+-fi
- { (exit 0); exit 0; }
- _ACEOF
+ ### Check for the availability of other packages
+ ### --------------------------------------------
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 6de9b4f..746a3fe 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -112,6 +112,7 @@ src_prepare() {
"${FILESDIR}"/${P}-linkage-tuneups.patch
"${FILESDIR}"/${P}-more-patches.patch
"${FILESDIR}"/${P}-linkage-tuneups-addons.patch
+ "${FILESDIR}"/${P}-configure.patch
)
# "${FILESDIR}"/${P}-as-needed.patch
# "${FILESDIR}"/${P}-fix-creaders-linking.patch
@@ -121,7 +122,6 @@ src_prepare() {
# "${FILESDIR}"/${P}-linking2.patch
# )
# "${FILESDIR}"/${P}-support-autoconf-2.60.patch
- # "${FILESDIR}"/${P}-configure.patch
epatch ${PATCHES[@]}
# make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60
# https://bugs.gentoo.org/show_bug.cgi?id=514706
@@ -132,7 +132,7 @@ src_prepare() {
# eautoreconf
# Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
- #eautoconf
+ # eautoconf # keep it disabled until we can ensure 2.59 is installed
# beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-06-25 23:24 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2014-06-25 23:24 UTC (permalink / raw
To: gentoo-commits
commit: f88f1a0e9b529e9ca95ecec39f080675a4ae20de
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 25 23:24:16 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 25 23:24:16 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f88f1a0e
sci-biology/ncbi-tools++-12.0.0: dropped unneeded patches, added direct dependency on glew because the dependency on virtual/opengl does not work
---
.../files/ncbi-tools++-12.0.0-linking.patch | 52 ----------------------
.../files/ncbi-tools++-12.0.0-linking2.patch | 10 -----
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 7 +--
3 files changed, 2 insertions(+), 67 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking.patch
deleted file mode 100644
index 196f3a4..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking.patch
+++ /dev/null
@@ -1,52 +0,0 @@
---- ncbi_cxx--12_0_0/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib.ori (revision 400707)
-+++ ncbi_cxx--12_0_0/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib (working copy)
-@@ -10,6 +10,6 @@
- LIB_OR_DLL = both
-
- # Dependencies for shared library
--DLL_LIB = ncbi_xreader$(DLL)
-+DLL_LIB = $(GENBANK_LDEP)
-
- WATCHERS = vasilche
---- ncbi_cxx--12_0_0/src/app/grid/util/Makefile.ncfetch.app.ori (revision 400707)
-+++ ncbi_cxx--12_0_0/src/app/grid/util/Makefile.ncfetch.app (working copy)
-@@ -5,7 +5,7 @@
- APP = ncfetch.cgi
- SRC = ncfetch
-
--LIB = xcgi xconnserv xconnect xutil xncbi
-+LIB = xcgi xconnserv xthrserv xconnect xutil xncbi
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
- WATCHERS = kazimird
---- ncbi_cxx--12_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app.ori (revision 400707)
-+++ ncbi_cxx--12_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app (working copy)
-@@ -4,7 +4,7 @@
- SRC = netcache_cgi_sample
-
- ### BEGIN COPIED SETTINGS
--LIB = xconnserv xconnect xcgi xhtml xutil xncbi
-+LIB = xconnserv xthrserv xconnect xcgi xhtml xutil xncbi
-
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
- ### END COPIED SETTINGS
---- ncbi_cxx--12_0_0/src/misc/grid_cgi/Makefile.xgridcgi.lib.ori 2014-06-24 21:42:11.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/misc/grid_cgi/Makefile.xgridcgi.lib 2014-06-24 21:42:29.000000000 +0200
-@@ -10,4 +10,4 @@
-
- WATCHERS = vakatov
-
--DLL_LIB = xncbi xcgi xconnserv xhtml
-+DLL_LIB = xhtml xcgi xconnserv
---- ncbi_cxx--12_0_0/src/sra/sdk/libs/vfs/Makefile.vfs.lib.ori 2014-06-24 22:54:55.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/sra/sdk/libs/vfs/Makefile.vfs.lib 2014-06-24 22:55:05.000000000 +0200
-@@ -8,6 +8,7 @@
- CPPFLAGS = -I$(srcdir) $(SRA_INCLUDE) $(Z_INCLUDE) $(BZ2_INCLUDE) \
- $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY -DALWAYS_ADD_EXE $(ORIG_CPPFLAGS)
-
--DLL_LIB = srapath$(DLL) kurl$(DLL) krypto$(DLL) kfg$(DLL) kfs$(DLL) klib$(DLL)
-+DLL_LIB = srapath$(FORCE_STATIC) kurl$(FORCE_STATIC) krypto$(DLL) \
-+ kfg$(DLL) kfs$(DLL) klib$(DLL)
-
- LIB_OR_DLL = both
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking2.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking2.patch
deleted file mode 100644
index 5507b84..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linking2.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- ncbi_cxx--12_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app.ori 2014-06-24 21:50:43.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app 2014-06-24 21:50:48.000000000 +0200
-@@ -11,7 +11,7 @@
- # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
-
- ### BEGIN COPIED SETTINGS
--LIB = xgridcgi xcgi xhtml xconnserv xconnect xutil xncbi
-+LIB = xgridcgi xcgi xhtml xconnserv xthrserv xconnect xutil xncbi
-
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 746a3fe..d8b7d97 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -42,7 +42,7 @@ DEPEND="
mysql? ( virtual/mysql )
ssl? ( dev-libs/openssl )
fltk? ( x11-libs/fltk )
- opengl? ( virtual/opengl )
+ opengl? ( virtual/opengl media-libs/glew )
mesa? ( media-libs/mesa
media-libs/glew
)
@@ -72,7 +72,7 @@ DEPEND="
# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
-# seems muParser is required, also glew is required. configure exits otherwise
+# seems muParser is required, also glew is required. configure exits otherwise if these are explicitly passed to it (due to USE flag enabled)
RDEPEND="${DEPEND}"
@@ -117,9 +117,6 @@ src_prepare() {
# "${FILESDIR}"/${P}-as-needed.patch
# "${FILESDIR}"/${P}-fix-creaders-linking.patch
# "${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
-# replaced by -linkage-tuneups.patch
-# "${FILESDIR}"/${P}-linking.patch
-# "${FILESDIR}"/${P}-linking2.patch
# )
# "${FILESDIR}"/${P}-support-autoconf-2.60.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-06-26 20:42 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2014-06-26 20:42 UTC (permalink / raw
To: gentoo-commits
commit: d9e17bf2b88b99ee5a31c5406f39cf91964dde10
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jun 26 20:41:58 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jun 26 20:41:58 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d9e17bf2
sci-biology/ncbi-tools++: fix 'make install if USE=pch
---
.../ncbi-tools++/files/ncbi-tools++-12.0.0-fix-install.patch | 11 +++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 1 +
2 files changed, 12 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-install.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-install.patch
new file mode 100644
index 0000000..8d53ebe
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-install.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--12_0_0/src/build-system/Makefile.in.top.ori (revision 439078)
++++ ncbi_cxx--12_0_0/src/build-system/Makefile.in.top (working copy)
+@@ -48,7 +48,7 @@
+ for x in *.a; do ln -s "$$x" "`basename \"$$x\" .a`-static.a"; done
+ cd $(includedir0) && find * -name CVS -prune -o -print |\
+ cpio -pd $(pincludedir)
+- $(INSTALL) -m 644 $(incdir)/* $(pincludedir)
++ $(INSTALL) -m 644 $(incdir)/*.* $(pincludedir)
+ ## set up appropriate build and status directories somewhere under $(libdir)?
+
+ install-gbench:
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 23ff5d8..3429e05 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -114,6 +114,7 @@ src_prepare() {
"${FILESDIR}"/${P}-linkage-tuneups-addons.patch
"${FILESDIR}"/${P}-configure.patch
"${FILESDIR}"/${P}-drop-STATIC-from-LIB.patch
+ "${FILESDIR}"/${P}-fix-install.patch
)
# "${FILESDIR}"/${P}-as-needed.patch
# "${FILESDIR}"/${P}-fix-creaders-linking.patch
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2014-09-16 4:07 Christoph Junghans
0 siblings, 0 replies; 30+ messages in thread
From: Christoph Junghans @ 2014-09-16 4:07 UTC (permalink / raw
To: gentoo-commits
commit: 963a1fab8ea050e44077f03bc5783decff5f8ac8
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 03:32:57 2014 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 03:32:57 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=963a1fab
major clean, drop old version and unused patches
Package-Manager: portage-2.2.8-r1
---
sci-biology/ncbi-tools++/ChangeLog | 15 +-
.../files/ncbi-tools++-12.0.0-as-needed.patch | 1867 --------------------
.../files/ncbi-tools++-9.0.0-as-needed.patch | 1864 -------------------
.../files/ncbi-tools++-9.0.0-conf-opts.patch | 213 ---
.../ncbi-tools++-9.0.0-disable_test_compress.patch | 15 -
.../ncbi-tools++-9.0.0-fix-creaders-linking.patch | 10 -
.../ncbi-tools++-9.0.0-fix-order-of-libs.patch | 24 -
.../ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch | 10 -
...-reference-to-GenBankReaders_Register_Id1.patch | 10 -
...ls++-9.0.0-remove-LZO-definition-upstream.patch | 10 -
sci-biology/ncbi-tools++/metadata.xml | 3 -
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 3 +-
.../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 329 ----
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 303 ----
14 files changed, 15 insertions(+), 4661 deletions(-)
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index 5abfefa..65f0990 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -2,6 +2,20 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 16 Sep 2014; Christoph Junghans <ottxor@gentoo.org>
+ -files/ncbi-tools++-12.0.0-as-needed.patch,
+ -files/ncbi-tools++-9.0.0-as-needed.patch,
+ -files/ncbi-tools++-9.0.0-conf-opts.patch,
+ -files/ncbi-tools++-9.0.0-disable_test_compress.patch,
+ -files/ncbi-tools++-9.0.0-fix-creaders-linking.patch,
+ -files/ncbi-tools++-9.0.0-fix-order-of-libs.patch,
+ -files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch, -files/ncbi-tools++-9.0.
+ 0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch,
+ -files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch,
+ -ncbi-tools++-9.0.0-r1.ebuild, -ncbi-tools++-9.0.0.ebuild, metadata.xml,
+ ncbi-tools++-12.0.0.ebuild:
+ major clean, drop old version and unused patches
+
23 Jun 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ChangeLog:
add patches for 12.0.0 to support autoconf-2.60 (so far 2.59 was needed),
patches from upstream:
@@ -112,4 +126,3 @@
03 Mar 2013; Justin Lecher <jlec@gentoo.org> +metadata.xml:
Add metadata.xml
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
deleted file mode 100644
index a9d166e..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-as-needed.patch
+++ /dev/null
@@ -1,1867 +0,0 @@
- .../align/contig_assembly/Makefile.xalgocontig_assembly.lib | 2 ++
- src/algo/align/ngalign/Makefile.xngalign.lib | 2 ++
- src/algo/align/nw/Makefile.xalgoalignnw.lib | 2 ++
- src/algo/align/prosplign/Makefile.prosplign.lib | 2 ++
- src/algo/align/splign/Makefile.xalgoalignsplign.lib | 2 ++
- src/algo/blast/api/Makefile.xblast.lib | 2 +-
- src/algo/blast/blastinput/Makefile.blastinput.lib | 2 +-
- src/algo/blast/core/Makefile.blast.lib | 2 ++
- src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib | 2 ++
- .../dbindex_search/Makefile.xalgoblastdbindex_search.lib | 2 ++
- src/algo/blast/format/Makefile.xblastformat.lib | 2 +-
- src/algo/blast/gumbel_params/Makefile.gumbelparams.lib | 1 +
- src/algo/cobalt/Makefile.cobalt.lib | 2 ++
- src/algo/dustmask/Makefile.xalgodustmask.lib | 1 +
- src/algo/gnomon/Makefile.gnomon.lib | 2 +-
- src/algo/ms/formats/pepxml/Makefile.pepXML.lib | 2 ++
- src/algo/ms/omssa/Makefile.xomssa.lib | 2 ++
- src/algo/phy_tree/Makefile.xalgophytree.lib | 2 +-
- src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib | 2 ++
- src/algo/segmask/Makefile.xalgosegmask.lib | 1 +
- src/algo/seqqa/Makefile.xalgoseqqa.lib | 2 ++
- src/algo/sequence/Makefile.xalgoseq.lib | 2 ++
- src/algo/structure/bma_refine/Makefile.xbma_refiner.lib | 3 +++
- src/algo/structure/cd_utils/Makefile.xcd_utils.lib | 2 +-
- src/algo/structure/struct_dp/Makefile.xstruct_dp.lib | 2 ++
- src/algo/structure/struct_util/Makefile.xstruct_util.lib | 2 ++
- src/algo/structure/threader/Makefile.xstruct_thread.lib | 2 ++
- src/algo/text/Makefile.xalgotext.lib | 2 ++
- src/algo/volume_merge/Makefile.xalgovmerge.lib | 2 ++
- src/algo/winmask/Makefile.xalgowinmask.lib | 2 ++
- src/cgi/Makefile.cgi.lib | 2 ++
- src/cgi/Makefile.fcgi.lib | 2 ++
- src/connect/Makefile.connssl.lib | 2 ++
- src/connect/Makefile.xconnect.lib | 4 ++++
- src/connect/Makefile.xthrserv.lib | 2 +-
- src/connect/Makefile.xxconnect.lib | 2 ++
- src/connect/services/Makefile.ncbi_xcache_netcache.lib | 2 +-
- src/connect/services/Makefile.xconnserv.lib | 2 +-
- src/corelib/Makefile.test_boost.lib | 2 ++
- src/corelib/Makefile.test_mt.lib | 2 ++
- src/corelib/test/Makefile.pbacktest.lib | 2 ++
- src/db/bdb/Makefile.bdb.lib | 4 ++++
- src/db/bdb/Makefile.ncbi_xcache_bdb.lib | 2 +-
- src/db/sqlite/Makefile.sqlitewrapp.lib | 3 +++
- src/dbapi/Makefile.dbapi.lib | 5 +++++
- src/dbapi/driver/Makefile.dbapi_driver.lib | 2 ++
- src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib | 2 ++
- src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib | 2 +-
- src/dbapi/simple/Makefile.sdbapi.lib | 11 +++++++++++
- src/html/Makefile.html.lib | 2 ++
- src/misc/cgi_redirect/Makefile.cgi_redirect.lib | 2 ++
- src/misc/grid_cgi/Makefile.xgridcgi.lib | 2 ++
- src/objects/access/Makefile.access.lib | 1 +
- src/objects/biblio/Makefile.biblio.lib | 2 ++
- src/objects/biotree/Makefile.biotree.lib | 2 ++
- src/objects/blast/Makefile.blast.lib | 2 ++
- src/objects/blast/Makefile.xnetblastcli.lib | 2 ++
- src/objects/blastdb/Makefile.blastdb.lib | 2 ++
- src/objects/blastxml/Makefile.blastxml.lib | 2 ++
- src/objects/cdd/Makefile.cdd.lib | 2 ++
- src/objects/cn3d/Makefile.cn3d.lib | 2 ++
- src/objects/docsum/Makefile.docsum.lib | 2 ++
- src/objects/entrez2/Makefile.entrez2.lib | 2 ++
- src/objects/entrez2/Makefile.entrez2cli.lib | 2 ++
- src/objects/entrezgene/Makefile.entrezgene.lib | 2 ++
- src/objects/featdef/Makefile.featdef.lib | 2 ++
- src/objects/gbseq/Makefile.gbseq.lib | 2 ++
- src/objects/general/Makefile.general.lib | 2 ++
- src/objects/genomecoll/Makefile.genome_collection.lib | 2 ++
- src/objects/homologene/Makefile.homologene.lib | 2 ++
- src/objects/id1/Makefile.id1.lib | 2 ++
- src/objects/id1/Makefile.id1cli.lib | 2 ++
- src/objects/id2/Makefile.id2.lib | 2 ++
- src/objects/id2/Makefile.id2cli.lib | 2 ++
- src/objects/insdseq/Makefile.insdseq.lib | 2 ++
- src/objects/macro/Makefile.macro.lib | 2 ++
- src/objects/medlars/Makefile.medlars.lib | 2 ++
- src/objects/medline/Makefile.medline.lib | 2 ++
- src/objects/mim/Makefile.mim.lib | 2 ++
- src/objects/mla/Makefile.mla.lib | 2 ++
- src/objects/mla/Makefile.mlacli.lib | 2 ++
- src/objects/mmdb/Makefile.mmdb.lib | 2 ++
- src/objects/ncbimime/Makefile.ncbimime.lib | 2 ++
- src/objects/objprt/Makefile.objprt.lib | 2 ++
- src/objects/omssa/Makefile.omssa.lib | 2 ++
- src/objects/pcassay/Makefile.pcassay.lib | 2 ++
- src/objects/pcsubstance/Makefile.pcsubstance.lib | 2 ++
- src/objects/proj/Makefile.proj.lib | 2 ++
- src/objects/pub/Makefile.pub.lib | 2 ++
- src/objects/pubmed/Makefile.pubmed.lib | 2 ++
- src/objects/remap/Makefile.remap.lib | 2 ++
- src/objects/remap/Makefile.remapcli.lib | 2 ++
- src/objects/scoremat/Makefile.scoremat.lib | 2 ++
- src/objects/seq/Makefile.seq.lib | 2 ++
- src/objects/seqcode/Makefile.seqcode.lib | 2 ++
- src/objects/seqedit/Makefile.seqedit.lib | 1 +
- src/objects/seqset/Makefile.seqset.lib | 1 +
- src/objects/seqsplit/Makefile.seqsplit.lib | 2 ++
- src/objects/seqtest/Makefile.seqtest.lib | 2 ++
- src/objects/submit/Makefile.submit.lib | 1 +
- src/objects/taxon1/Makefile.taxon1.lib | 2 ++
- src/objects/taxon3/Makefile.taxon3.lib | 2 ++
- src/objects/tinyseq/Makefile.tinyseq.lib | 2 ++
- src/objects/valerr/Makefile.valerr.lib | 2 ++
- src/objects/valid/Makefile.valid.lib | 2 ++
- src/objects/variation/Makefile.variation.lib | 1 +
- src/objmgr/split/Makefile.id2_split.lib | 2 +-
- src/objmgr/util/Makefile.util.lib | 1 +
- src/objtools/align/Makefile.xalntool.lib | 2 ++
- src/objtools/align_format/Makefile.align_format.lib | 2 ++
- src/objtools/alnmgr/Makefile.alnmgr.lib | 1 +
- src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib | 2 ++
- src/objtools/blast/gene_info_reader/Makefile.gene_info.lib | 2 ++
- .../blast/gene_info_writer/Makefile.gene_info_writer.lib | 2 ++
- src/objtools/blast/seqdb_reader/Makefile.seqdb.lib | 2 ++
- src/objtools/blast/seqdb_writer/Makefile.writedb.lib | 2 ++
- src/objtools/blast/services/Makefile.blast_services.lib | 1 +
- src/objtools/cddalignview/Makefile.cddalignview.lib | 2 ++
- src/objtools/cleanup/Makefile.cleanup.lib | 2 +-
- .../data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib | 3 +++
- .../blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib | 2 ++
- src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib | 2 ++
- src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib | 2 +-
- .../data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib | 2 ++
- .../data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib | 2 ++
- src/objtools/data_loaders/trace/Makefile.xloader_trace.lib | 2 ++
- src/objtools/edit/Makefile.edit.lib | 2 ++
- src/objtools/eutils/api/Makefile.eutils.lib | 2 ++
- src/objtools/eutils/egquery/Makefile.egquery.lib | 2 ++
- src/objtools/eutils/ehistory/Makefile.ehistory.lib | 2 ++
- src/objtools/eutils/einfo/Makefile.einfo.lib | 2 ++
- src/objtools/eutils/elink/Makefile.elink.lib | 2 ++
- src/objtools/eutils/epost/Makefile.epost.lib | 2 ++
- src/objtools/eutils/esearch/Makefile.esearch.lib | 2 ++
- src/objtools/eutils/espell/Makefile.espell.lib | 2 ++
- src/objtools/eutils/esummary/Makefile.esummary.lib | 2 ++
- src/objtools/eutils/linkout/Makefile.linkout.lib | 2 ++
- src/objtools/eutils/uilist/Makefile.uilist.lib | 2 ++
- src/objtools/format/Makefile.xformat.lib | 2 ++
- src/objtools/lds/Makefile.lds.lib | 2 +-
- src/objtools/manip/Makefile.xobjmanip.lib | 2 ++
- src/objtools/readers/Makefile.xobjread.lib | 3 +--
- src/objtools/readers/Makefile.xobjreadex.lib | 2 +-
- src/objtools/seqmasks_io/Makefile.seqmasks_io.lib | 2 +-
- src/objtools/simple/Makefile.xobjsimple.lib | 1 +
- src/objtools/snputil/Makefile.snputil.lib | 2 ++
- src/objtools/validator/Makefile.validator.lib | 2 ++
- src/objtools/writers/Makefile.xobjwrite.lib | 1 +
- src/sample/app/asn/Makefile.sample_asn.lib | 2 ++
- src/sample/app/soap/Makefile.soap_dataobj.lib | 2 ++
- src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib | 2 ++
- src/sample/lib/basic/Makefile.basic_sample_lib.lib | 2 ++
- src/sample/lib/dtd/Makefile.dtd_sample_lib.lib | 2 ++
- src/sample/lib/xsd/Makefile.xsd_sample_lib.lib | 2 ++
- src/serial/Makefile.serial.lib | 2 ++
- src/serial/soap/Makefile.soap.lib | 2 ++
- src/serial/soap/Makefile.soap_server.lib | 2 ++
- src/serial/test/Makefile.we_cpp.lib | 1 +
- src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib | 2 +-
- src/sra/sdk/libs/align/Makefile.align-writer.lib | 2 +-
- src/util/Makefile.util.lib | 2 ++
- src/util/compress/api/Makefile.compress.lib | 2 +-
- src/util/qparse/Makefile.xqueryparse.lib | 2 ++
- src/util/regexp/Makefile.regexp.lib | 2 ++
- src/util/sequtil/Makefile.sequtil.lib | 2 ++
- src/util/xregexp/Makefile.xregexp.lib | 2 +-
- 166 files changed, 315 insertions(+), 23 deletions(-)
-
-diff --git a/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib b/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
-index c8851d8..35ae629 100644
---- a/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
-+++ b/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
-@@ -10,3 +10,5 @@ LIB = xalgocontig_assembly
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = align_format blastinput dbapi_driver seq xalgoalignnw xalgodustmask xalnmgr xblast xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/align/ngalign/Makefile.xngalign.lib b/src/algo/align/ngalign/Makefile.xngalign.lib
-index d163f7c..ade88ce 100644
---- a/src/algo/align/ngalign/Makefile.xngalign.lib
-+++ b/src/algo/align/ngalign/Makefile.xngalign.lib
-@@ -15,3 +15,5 @@ LIB = xngalign
-
- CXXFLAGS = $(FAST_CXXFLAGS) -I./.
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = seq xalgoalignutil xncbi blastinput xalgoalignnw align_format xcgi ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2
-diff --git a/src/algo/align/nw/Makefile.xalgoalignnw.lib b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-index acc1ddf..acba81c 100644
---- a/src/algo/align/nw/Makefile.xalgoalignnw.lib
-+++ b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-@@ -15,3 +15,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = kiryutin
-+
-+DLL_LIB = access align_format dbapi_driver general seq writedb xncbi xser # axf
-diff --git a/src/algo/align/prosplign/Makefile.prosplign.lib b/src/algo/align/prosplign/Makefile.prosplign.lib
-index 248ee37..73143ad 100644
---- a/src/algo/align/prosplign/Makefile.prosplign.lib
-+++ b/src/algo/align/prosplign/Makefile.prosplign.lib
-@@ -10,3 +10,5 @@ LIB = prosplign
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = align_format blastinput dbapi_driver general igblast seq xalgoalignutil xalnmgr xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/align/splign/Makefile.xalgoalignsplign.lib b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
-index 077f111..dff1877 100644
---- a/src/algo/align/splign/Makefile.xalgoalignsplign.lib
-+++ b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
-@@ -10,3 +10,5 @@ LIB = xalgoalignsplign
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = access align_format blastinput dbapi_driver gene_info general seq seqdb xalgoalignnw xalgoalignutil xalgoseq xblast xncbi xobjmgr xobjutil xser xutil # axf prosplign
-diff --git a/src/algo/blast/api/Makefile.xblast.lib b/src/algo/blast/api/Makefile.xblast.lib
-index 4e424b3..8708bf0 100644
---- a/src/algo/blast/api/Makefile.xblast.lib
-+++ b/src/algo/blast/api/Makefile.xblast.lib
-@@ -81,7 +81,7 @@ LIB = xblast
- DLL_LIB = xalgoblastdbindex composition_adjustment xalgowinmask \
- xalgodustmask seqmasks_io seqdb $(OBJREAD_LIBS) xobjutil \
- blastdb xnetblastcli xnetblast scoremat xconnect tables \
-- $(SOBJMGR_LIBS)
-+ $(SOBJMGR_LIBS) seqdb xnetblast xnetblastcli xalgoblastdbindex xalgowinmask tables composition_adjustment xobjread
-
- CFLAGS = $(FAST_CFLAGS)
- CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
-diff --git a/src/algo/blast/blastinput/Makefile.blastinput.lib b/src/algo/blast/blastinput/Makefile.blastinput.lib
-index 372dba1..d5986c7 100644
---- a/src/algo/blast/blastinput/Makefile.blastinput.lib
-+++ b/src/algo/blast/blastinput/Makefile.blastinput.lib
-@@ -24,7 +24,7 @@ SRC = $(SRC_CXX)
-
- LIB = blastinput
-
--DLL_LIB = xblast align_format ncbi_xloader_blastdb_rmt ncbi_xloader_blastdb seqdb $(OBJREAD_LIBS) $(OBJMGR_LIBS) xutil
-+DLL_LIB = seqdb ncbi_xloader_blastdb ncbi_xloader_blastdb_rmt align_format xalnmgr xblast align_format ncbi_xloader_blastdb_rmt ncbi_xloader_blastdb seqdb $(OBJREAD_LIBS) xcgi xobjread xobjutil ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2 xalnmgr xcgi xutil
-
- # should be redundant, given the above :-/
- ASN_DEP = seqset xnetblast
-diff --git a/src/algo/blast/core/Makefile.blast.lib b/src/algo/blast/core/Makefile.blast.lib
-index 8e889a7..1326aee 100644
---- a/src/algo/blast/core/Makefile.blast.lib
-+++ b/src/algo/blast/core/Makefile.blast.lib
-@@ -23,3 +23,5 @@ LDFLAGS = $(FAST_LDFLAGS)
-
-
- WATCHERS = coulouri maning madden camacho
-+
-+DLL_LIB = xutil
-diff --git a/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib b/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
-index fcfb9f9..0e762b4 100644
---- a/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
-+++ b/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
-@@ -14,3 +14,5 @@ LDFLAGS = $(FAST_LDFLAGS)
- ASN_DEP = seqset
-
- WATCHERS = morgulis
-+
-+DLL_LIB = dbapi_driver seq seqdb seqset xncbi xobjmgr xobjread xobjutil xser xutil # axf
-diff --git a/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib b/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
-index e64f111..475f4a1 100644
---- a/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
-+++ b/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
-@@ -10,3 +10,5 @@ LDFLAGS = $(FAST_LDFLAGS)
- ASN_DEP = seqset
-
- WATCHERS = morgulis
-+
-+DLL_LIB = dbapi_driver xncbi xobjmgr # axf
-diff --git a/src/algo/blast/format/Makefile.xblastformat.lib b/src/algo/blast/format/Makefile.xblastformat.lib
-index 3058881..7a6d07d 100644
---- a/src/algo/blast/format/Makefile.xblastformat.lib
-+++ b/src/algo/blast/format/Makefile.xblastformat.lib
-@@ -7,6 +7,6 @@ SRC = blastfmtutil blastxml_format blast_format data4xmlformat build_archive vec
-
- CPPFLAGS = -DNCBI_MODULE=BLASTFORMAT $(ORIG_CPPFLAGS)
-
--DLL_LIB = align_format blastxml xhtml xcgi
-+DLL_LIB = align_format blastxml xhtml xcgi align_format general scoremat seq seqdb xalnmgr xblast xnetblast xobjmgr xobjutil blast_services ncbi_xloader_genbank xcgi # cobalt
-
- WATCHERS = jianye zaretska madden camacho fongah2
-diff --git a/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib b/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
-index 316d4fa..844de85 100644
---- a/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
-+++ b/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
-@@ -11,3 +11,4 @@ LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = boratyng madden camacho
-
-+DLL_LIB = dbapi_driver xncbi xutil # axf
-diff --git a/src/algo/cobalt/Makefile.cobalt.lib b/src/algo/cobalt/Makefile.cobalt.lib
-index e618f67..b406cc5 100644
---- a/src/algo/cobalt/Makefile.cobalt.lib
-+++ b/src/algo/cobalt/Makefile.cobalt.lib
-@@ -14,3 +14,5 @@ ASN_DEP = seq seqset biotree xnetblast blastdb
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = align_format dbapi_driver general igblast seq seqdb seqset xalgoalignnw xalgophytree xblast xncbi xnetblast xobjmgr xobjutil xser fastme # axf
-diff --git a/src/algo/dustmask/Makefile.xalgodustmask.lib b/src/algo/dustmask/Makefile.xalgodustmask.lib
-index 84e2568..3632356 100644
---- a/src/algo/dustmask/Makefile.xalgodustmask.lib
-+++ b/src/algo/dustmask/Makefile.xalgodustmask.lib
-@@ -11,3 +11,4 @@ SRC = symdust
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = dbapi_driver seq xncbi xobjmgr # axf
-diff --git a/src/algo/gnomon/Makefile.gnomon.lib b/src/algo/gnomon/Makefile.gnomon.lib
-index 2a06ee8..d73cd8f 100644
---- a/src/algo/gnomon/Makefile.gnomon.lib
-+++ b/src/algo/gnomon/Makefile.gnomon.lib
-@@ -6,7 +6,7 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) \
- gnomon_engine gnomon_objmgr score gnomon_model parse hmm gnomon_seq asn1 chainer id_handler \
- annot select_alignments_alt aligncollapser
- LIB = xalgognomon
--DLL_LIB = xobjutil $(SOBJMGR_LIBS)
-+DLL_LIB = xobjutil $(SOBJMGR_LIBS) xalgoseq
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-diff --git a/src/algo/ms/formats/pepxml/Makefile.pepXML.lib b/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
-index 686dd70..98f57b2 100644
---- a/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
-+++ b/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
-@@ -2,3 +2,5 @@ WATCHERS = lewisg slottad
-
- LIB = pepXML
- SRC = pepXML__ pepXML___
-+
-+DLL_LIB = access align_format dbapi_driver xncbi xser # axf
-diff --git a/src/algo/ms/omssa/Makefile.xomssa.lib b/src/algo/ms/omssa/Makefile.xomssa.lib
-index 872b92e..78261eb 100644
---- a/src/algo/ms/omssa/Makefile.xomssa.lib
-+++ b/src/algo/ms/omssa/Makefile.xomssa.lib
-@@ -19,3 +19,5 @@ LIB = xomssa
- CFLAGS = $(FAST_CFLAGS)
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = xutil omssa pepXML xcompress xconnect seqdb blast xregexp
-diff --git a/src/algo/phy_tree/Makefile.xalgophytree.lib b/src/algo/phy_tree/Makefile.xalgophytree.lib
-index c7e2778..51ebe9d 100644
---- a/src/algo/phy_tree/Makefile.xalgophytree.lib
-+++ b/src/algo/phy_tree/Makefile.xalgophytree.lib
-@@ -6,7 +6,7 @@ ASN_DEP = biotree seqset
-
- SRC = bio_tree phy_node dist_methods lex.newick newick.tab tree_to_dist_mat phytree_calc
- LIB = xalgophytree
--DLL_LIB = biotree
-+DLL_LIB = biotree seq xalnmgr xobjutil # fastme
-
- # The -I flag is necessary because filenames in #line directives throw
- # off some compilers (GCC 2.95 at least). :-/
-diff --git a/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib b/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
-index 15d7440..fab9207 100644
---- a/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
-+++ b/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
-@@ -10,3 +10,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
- ASN_DEP = biotree seqset taxon1
-
- WATCHERS = boratyng
-+
-+DLL_LIB = access align_format biotree dbapi_driver fastme gene_info seq taxon1 xalgophytree xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/segmask/Makefile.xalgosegmask.lib b/src/algo/segmask/Makefile.xalgosegmask.lib
-index bd011c1..97281ec 100644
---- a/src/algo/segmask/Makefile.xalgosegmask.lib
-+++ b/src/algo/segmask/Makefile.xalgosegmask.lib
-@@ -11,3 +11,4 @@ SRC = segmask
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = align_format xobjmgr
-diff --git a/src/algo/seqqa/Makefile.xalgoseqqa.lib b/src/algo/seqqa/Makefile.xalgoseqqa.lib
-index b1bea47..a0e5b1b 100644
---- a/src/algo/seqqa/Makefile.xalgoseqqa.lib
-+++ b/src/algo/seqqa/Makefile.xalgoseqqa.lib
-@@ -12,3 +12,5 @@ LIB = xalgoseqqa
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
-+
-+DLL_LIB = access align_format dbapi_driver entrez2cli gene_info general seq seqtest xalgognomon xalgoseq xalnmgr xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/sequence/Makefile.xalgoseq.lib b/src/algo/sequence/Makefile.xalgoseq.lib
-index 70d42a1..ab7b80f 100644
---- a/src/algo/sequence/Makefile.xalgoseq.lib
-+++ b/src/algo/sequence/Makefile.xalgoseq.lib
-@@ -13,3 +13,5 @@ LDFLAGS = $(FAST_LDFLAGS)
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
-
- WATCHERS = dicuccio
-+
-+DLL_LIB = taxon1 xalnmgr xregexp align_format seqset xobjmgr xobjutil
-diff --git a/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib b/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
-index 5562f82..68d3a87 100644
---- a/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
-+++ b/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
-@@ -24,3 +24,6 @@ SRC = RowSelector \
- RefinerTrial \
- RefinerEngine \
- Interface
-+
-+DLL_LIB = blastinput cdd ncbi_xcache_bdb xcd_utils xncbi xser xutil
-+
-diff --git a/src/algo/structure/cd_utils/Makefile.xcd_utils.lib b/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
-index eda71f8..8d3a96a 100644
---- a/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
-+++ b/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
-@@ -68,6 +68,6 @@ SRC = \
- cuTaxTree \
- cuUtils
-
--DLL_LIB = xobjread
-+DLL_LIB = xobjread blastdb blast_services cdd entrez2cli id1cli mmdb ncbimime scoremat taxon1 xblast xobjmgr xregexp
-
- CPPFLAGS = $(ORIG_CPPFLAGS)
-diff --git a/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib b/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
-index 676a8dd..3d3e4c9 100644
---- a/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
-+++ b/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
-@@ -9,3 +9,5 @@ WATCHERS = thiessen
- SRC = block_align
-
- LIB = xstruct_dp
-+
-+DLL_LIB = xncbi
-diff --git a/src/algo/structure/struct_util/Makefile.xstruct_util.lib b/src/algo/structure/struct_util/Makefile.xstruct_util.lib
-index 5a38c7d..35d7077 100644
---- a/src/algo/structure/struct_util/Makefile.xstruct_util.lib
-+++ b/src/algo/structure/struct_util/Makefile.xstruct_util.lib
-@@ -17,3 +17,5 @@ SRC = aaa_dummy_pch \
- su_block_multiple_alignment \
- su_pssm \
- su_sequence_set
-+
-+DLL_LIB = seqset seq xncbi scoremat xstruct_dp xblast
-diff --git a/src/algo/structure/threader/Makefile.xstruct_thread.lib b/src/algo/structure/threader/Makefile.xstruct_thread.lib
-index c06a2c0..9f1ff25 100644
---- a/src/algo/structure/threader/Makefile.xstruct_thread.lib
-+++ b/src/algo/structure/threader/Makefile.xstruct_thread.lib
-@@ -10,3 +10,5 @@ SRC = thrdalgs thrdatd thrdbwfi thrdcpal thrdcpll thrdcprl \
- thrdttbi thrdzsc
-
- LIB = xstruct_thread
-+
-+DLL_LIB = xutil
-diff --git a/src/algo/text/Makefile.xalgotext.lib b/src/algo/text/Makefile.xalgotext.lib
-index 7c0b48a..ba055ad 100644
---- a/src/algo/text/Makefile.xalgotext.lib
-+++ b/src/algo/text/Makefile.xalgotext.lib
-@@ -8,3 +8,5 @@ SRC = text_util vector_serial
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = align_format blastinput ncbi_xcache_bdb xcompress xncbi xutil # axf
-diff --git a/src/algo/volume_merge/Makefile.xalgovmerge.lib b/src/algo/volume_merge/Makefile.xalgovmerge.lib
-index 499861a..3ffb80b 100644
---- a/src/algo/volume_merge/Makefile.xalgovmerge.lib
-+++ b/src/algo/volume_merge/Makefile.xalgovmerge.lib
-@@ -10,3 +10,5 @@ SRC = volume_merge
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+
-+DLL_LIB = xncbi
-diff --git a/src/algo/winmask/Makefile.xalgowinmask.lib b/src/algo/winmask/Makefile.xalgowinmask.lib
-index afaf676..ad2c1fe 100644
---- a/src/algo/winmask/Makefile.xalgowinmask.lib
-+++ b/src/algo/winmask/Makefile.xalgowinmask.lib
-@@ -21,3 +21,5 @@ SRC = seq_masker seq_masker_score_mean seq_masker_score_mean_glob \
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = seqmasks_io xobjread xobjutil
-+
-diff --git a/src/cgi/Makefile.cgi.lib b/src/cgi/Makefile.cgi.lib
-index fb543d7..10762e4 100644
---- a/src/cgi/Makefile.cgi.lib
-+++ b/src/cgi/Makefile.cgi.lib
-@@ -12,3 +12,5 @@ LIB = xcgi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/cgi/Makefile.fcgi.lib b/src/cgi/Makefile.fcgi.lib
-index f68060b..c87d8e9 100644
---- a/src/cgi/Makefile.fcgi.lib
-+++ b/src/cgi/Makefile.fcgi.lib
-@@ -12,3 +12,5 @@ LIB = xfcgi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE) -DNCBI_XFCGI_EXPORTS
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/connect/Makefile.connssl.lib b/src/connect/Makefile.connssl.lib
-index b400ca2..8756320 100644
---- a/src/connect/Makefile.connssl.lib
-+++ b/src/connect/Makefile.connssl.lib
-@@ -8,3 +8,5 @@ CPPFLAGS = $(GNUTLS_INCLUDE) $(ORIG_CPPFLAGS)
- LIBS = $(GNUTLS_LIBS) $(ORIG_LIBS)
-
- WATCHERS = lavr
-+
-+DLL_LIB = connect
-diff --git a/src/connect/Makefile.xconnect.lib b/src/connect/Makefile.xconnect.lib
-index 473bb0b..88dae10 100644
---- a/src/connect/Makefile.xconnect.lib
-+++ b/src/connect/Makefile.xconnect.lib
-@@ -11,9 +11,13 @@ include $(srcdir)/Makefile.xxconnect.lib
- SRC = $(SRC_C) $(SRC_CXX)
- UNIX_SRC = $(LOCAL_LBSM)
-
-+DLL_LIB = xncbi
-+
- LIB = xconnect
- PROJ_TAG = core
-
- LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/connect/Makefile.xthrserv.lib b/src/connect/Makefile.xthrserv.lib
-index c7060d2..0dd00a0 100644
---- a/src/connect/Makefile.xthrserv.lib
-+++ b/src/connect/Makefile.xthrserv.lib
-@@ -4,6 +4,6 @@ SRC = threaded_server server server_monitor connection_pool
- LIB = xthrserv
- PROJ_TAG = core
- LIBS = $(NETWORK_LIBS)
--DLL_LIB = xutil xconnect
-+DLL_LIB = xncbi xutil xconnect
-
- WATCHERS = vakatov
-diff --git a/src/connect/Makefile.xxconnect.lib b/src/connect/Makefile.xxconnect.lib
-index d7ba751..8e27819 100644
---- a/src/connect/Makefile.xxconnect.lib
-+++ b/src/connect/Makefile.xxconnect.lib
-@@ -16,3 +16,5 @@ PROJ_TAG = core
- LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi xutil connect
-diff --git a/src/connect/services/Makefile.ncbi_xcache_netcache.lib b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-index 606f4f1..e6cfdac 100644
---- a/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-+++ b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-@@ -6,7 +6,7 @@ SRC = neticache_client
- LIB = ncbi_xcache_netcache
-
- LIB_OR_DLL = both
--DLL_LIB = xconnserv xconnect xutil
-+DLL_LIB = xconnserv xconnect xutil xncbi
-
- CPPFLAGS = $(ORIG_CPPFLAGS)
- LIBS = $(ORIG_LIBS)
-diff --git a/src/connect/services/Makefile.xconnserv.lib b/src/connect/services/Makefile.xconnserv.lib
-index 77382f2..5d124f2 100644
---- a/src/connect/services/Makefile.xconnserv.lib
-+++ b/src/connect/services/Makefile.xconnserv.lib
-@@ -15,6 +15,6 @@ LIB = xconnserv
- PROJ_TAG = core
- LIBS = $(NETWORK_LIBS)
-
--DLL_LIB = xthrserv xconnect xutil
-+DLL_LIB = xthrserv xconnect xutil xncbi
-
- WATCHERS = kazimird
-diff --git a/src/corelib/Makefile.test_boost.lib b/src/corelib/Makefile.test_boost.lib
-index 9d34c45..5678a38 100644
---- a/src/corelib/Makefile.test_boost.lib
-+++ b/src/corelib/Makefile.test_boost.lib
-@@ -9,3 +9,5 @@ REQUIRES = Boost.Test.Included
-
- WATCHERS = vakatov
- PROJ_TAG = test
-+
-+DLL_LIB = xncbi
-diff --git a/src/corelib/Makefile.test_mt.lib b/src/corelib/Makefile.test_mt.lib
-index 6153eab..f64c3a2 100644
---- a/src/corelib/Makefile.test_mt.lib
-+++ b/src/corelib/Makefile.test_mt.lib
-@@ -8,3 +8,5 @@ LIB = test_mt
- USE_PCH = no
- WATCHERS = grichenk
- PROJ_TAG = test
-+
-+DLL_LIB = xncbi
-diff --git a/src/corelib/test/Makefile.pbacktest.lib b/src/corelib/test/Makefile.pbacktest.lib
-index da0c616..c4c62ab 100644
---- a/src/corelib/test/Makefile.pbacktest.lib
-+++ b/src/corelib/test/Makefile.pbacktest.lib
-@@ -4,3 +4,5 @@ SRC = pbacktest
- LIB = xpbacktest
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi
-diff --git a/src/db/bdb/Makefile.bdb.lib b/src/db/bdb/Makefile.bdb.lib
-index 3729707..cd2827c 100644
---- a/src/db/bdb/Makefile.bdb.lib
-+++ b/src/db/bdb/Makefile.bdb.lib
-@@ -14,3 +14,7 @@ LIB = bdb
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
-
- WATCHERS = kuznets
-+
-+DLL_LIB = xncbi xutil
-+LIBS = $(BERKELEYDB_LIBS)
-+
-diff --git a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-index 7e97a26..8f54efc 100644
---- a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-+++ b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-@@ -8,7 +8,7 @@ SRC = bdb_blobcache
- LIB = ncbi_xcache_bdb
-
- LIB_OR_DLL = both
--DLL_LIB = bdb xutil
-+DLL_LIB = bdb xutil xncbi
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
- LIBS = $(BERKELEYDB_LIBS) $(ORIG_LIBS)
-diff --git a/src/db/sqlite/Makefile.sqlitewrapp.lib b/src/db/sqlite/Makefile.sqlitewrapp.lib
-index 77c9bf5..2c136d1 100644
---- a/src/db/sqlite/Makefile.sqlitewrapp.lib
-+++ b/src/db/sqlite/Makefile.sqlitewrapp.lib
-@@ -8,3 +8,6 @@ CPPFLAGS= $(ORIG_CPPFLAGS) $(SQLITE3_INCLUDE)
- REQUIRES = SQLITE3
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi xutil
-+LIBS = $(SQLITE3_LIBS)
-diff --git a/src/dbapi/Makefile.dbapi.lib b/src/dbapi/Makefile.dbapi.lib
-index 9e45b7a..b3fbb74 100644
---- a/src/dbapi/Makefile.dbapi.lib
-+++ b/src/dbapi/Makefile.dbapi.lib
-@@ -10,3 +10,8 @@ LIB = dbapi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
-
- WATCHERS = ucko
-+
-+#ASN_DEP = driver dbapi_driver
-+
-+DLL_LIB = xncbi xutil # dbapi_driver$(DLL)
-+LIBS = $(PYTHON_LIBS)
-diff --git a/src/dbapi/driver/Makefile.dbapi_driver.lib b/src/dbapi/driver/Makefile.dbapi_driver.lib
-index 779ea8f..fd6306b 100644
---- a/src/dbapi/driver/Makefile.dbapi_driver.lib
-+++ b/src/dbapi/driver/Makefile.dbapi_driver.lib
-@@ -22,3 +22,5 @@ CXXFLAGS_darwin = -fno-inline
- CXXFLAGS = $(ORIG_CXXFLAGS) $(CXXFLAGS_$(OSTYPE))
-
- WATCHERS = ucko
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-index 672570d..817f07a 100644
---- a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-+++ b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-@@ -6,3 +6,5 @@ LIB = dbapi_sample_base
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
-
- WATCHERS = ucko
-+
-+DLL_LIB = xncbi xutil dbapi_driver
-diff --git a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-index 2cfe73f..6ce8c66 100644
---- a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-+++ b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-@@ -11,6 +11,6 @@ LIB_OR_DLL = dll
-
- # Dependencies for shared library
- DLL_LIB = dbapi dbapi_driver$(DLL) $(XCONNEXT) xconnect xutil xncbi
--LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS)
-+LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS) $(PYTHON_LIBS)
-
- WATCHERS = ucko
-diff --git a/src/dbapi/simple/Makefile.sdbapi.lib b/src/dbapi/simple/Makefile.sdbapi.lib
-index 75be96d..bc87bc1 100644
---- a/src/dbapi/simple/Makefile.sdbapi.lib
-+++ b/src/dbapi/simple/Makefile.sdbapi.lib
-@@ -1,3 +1,4 @@
-+<<<<<<<
- # $Id: Makefile.sdbapi.lib 370257 2012-07-27 14:56:37Z ivanovp $
-
- SRC = sdbapi
-@@ -5,3 +6,13 @@ LIB = sdbapi
-
- WATCHERS = ucko
-
-+|||||||
-+
-+WATCHERS = ivanovp
-+
-+=======
-+
-+WATCHERS = ivanovp
-+
-+DLL_LIB = xncbi xutil dbapi_driver ncbi_xdbapi_ftds xconnect xser bdb xconnserv
-+>>>>>>>
-diff --git a/src/html/Makefile.html.lib b/src/html/Makefile.html.lib
-index a57c1e3..0005299 100644
---- a/src/html/Makefile.html.lib
-+++ b/src/html/Makefile.html.lib
-@@ -8,3 +8,5 @@ SRC = node html htmlhelper page pager selection components \
- LIB = xhtml
-
- WATCHERS = ivanov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/misc/cgi_redirect/Makefile.cgi_redirect.lib b/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
-index 6d7a4af..332e5d0 100644
---- a/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
-+++ b/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
-@@ -7,3 +7,5 @@ SRC = redirect
- LIB = xcgi_redirect
-
- WATCHERS = ivanov
-+
-+DLL_LIB = axf dbapi_driver xcgi xhtml xncbi
-diff --git a/src/misc/grid_cgi/Makefile.xgridcgi.lib b/src/misc/grid_cgi/Makefile.xgridcgi.lib
-index c9ef138..8e25cbe 100644
---- a/src/misc/grid_cgi/Makefile.xgridcgi.lib
-+++ b/src/misc/grid_cgi/Makefile.xgridcgi.lib
-@@ -9,3 +9,5 @@ LIB = xgridcgi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi xcgi xconnserv xhtml
-diff --git a/src/objects/access/Makefile.access.lib b/src/objects/access/Makefile.access.lib
-index 11421d9..e7900a1 100644
---- a/src/objects/access/Makefile.access.lib
-+++ b/src/objects/access/Makefile.access.lib
-@@ -1,2 +1,3 @@
- LIB = access
- SRC = access__ access___
-+DLL_LIB = xncbi xser
-diff --git a/src/objects/biblio/Makefile.biblio.lib b/src/objects/biblio/Makefile.biblio.lib
-index 2c7d491..cb54ba6 100644
---- a/src/objects/biblio/Makefile.biblio.lib
-+++ b/src/objects/biblio/Makefile.biblio.lib
-@@ -1,2 +1,4 @@
- LIB = biblio
- SRC = biblio__ biblio___ citation_base
-+
-+DLL_LIB = general xser xncbi xutil
-diff --git a/src/objects/biotree/Makefile.biotree.lib b/src/objects/biotree/Makefile.biotree.lib
-index 94b7e3d..e8f047a 100644
---- a/src/objects/biotree/Makefile.biotree.lib
-+++ b/src/objects/biotree/Makefile.biotree.lib
-@@ -2,3 +2,5 @@
-
- LIB = biotree
- SRC = biotree__ biotree___
-+
-+DLL_LIB = xncbi xser
-diff --git a/src/objects/blast/Makefile.blast.lib b/src/objects/blast/Makefile.blast.lib
-index 0dd0fa3..d50f29f 100644
---- a/src/objects/blast/Makefile.blast.lib
-+++ b/src/objects/blast/Makefile.blast.lib
-@@ -2,3 +2,5 @@ LIB = xnetblast
- SRC = blast__ blast___ names
-
- WATCHERS = camacho
-+
-+DLL_LIB = xncbi xutil xser seq seqset scoremat
-diff --git a/src/objects/blast/Makefile.xnetblastcli.lib b/src/objects/blast/Makefile.xnetblastcli.lib
-index 96325c4..d30f8ee 100644
---- a/src/objects/blast/Makefile.xnetblastcli.lib
-+++ b/src/objects/blast/Makefile.xnetblastcli.lib
-@@ -2,3 +2,5 @@ ASN_DEP = xnetblast
-
- LIB = xnetblastcli
- SRC = blastclient blastclient_
-+
-+DLL_LIB = xncbi xutil seqset xconnect xnetblast
-diff --git a/src/objects/blastdb/Makefile.blastdb.lib b/src/objects/blastdb/Makefile.blastdb.lib
-index be2c0d1..2884db2 100644
---- a/src/objects/blastdb/Makefile.blastdb.lib
-+++ b/src/objects/blastdb/Makefile.blastdb.lib
-@@ -1,2 +1,4 @@
- LIB = blastdb
- SRC = blastdb__ blastdb___
-+
-+DLL_LIB = xncbi xser seq
-diff --git a/src/objects/blastxml/Makefile.blastxml.lib b/src/objects/blastxml/Makefile.blastxml.lib
-index d18eb78..f90501d 100644
---- a/src/objects/blastxml/Makefile.blastxml.lib
-+++ b/src/objects/blastxml/Makefile.blastxml.lib
-@@ -1,2 +1,4 @@
- LIB = blastxml
- SRC = blastxml__ blastxml___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/cdd/Makefile.cdd.lib b/src/objects/cdd/Makefile.cdd.lib
-index 978cae9..24b726c 100644
---- a/src/objects/cdd/Makefile.cdd.lib
-+++ b/src/objects/cdd/Makefile.cdd.lib
-@@ -1,2 +1,4 @@
- LIB = cdd
- SRC = cdd__ cdd___
-+
-+DLL_LIB = mmdb xser scoremat cn3d
-diff --git a/src/objects/cn3d/Makefile.cn3d.lib b/src/objects/cn3d/Makefile.cn3d.lib
-index 1af5d1d..ecd31b2 100644
---- a/src/objects/cn3d/Makefile.cn3d.lib
-+++ b/src/objects/cn3d/Makefile.cn3d.lib
-@@ -1,3 +1,5 @@
- ASN_DEP = mmdb
- LIB = cn3d
- SRC = cn3d__ cn3d___
-+
-+DLL_LIB = mmdb xser
-diff --git a/src/objects/docsum/Makefile.docsum.lib b/src/objects/docsum/Makefile.docsum.lib
-index 0e68886..0bc8a1c 100644
---- a/src/objects/docsum/Makefile.docsum.lib
-+++ b/src/objects/docsum/Makefile.docsum.lib
-@@ -1,2 +1,4 @@
- LIB = docsum
- SRC = docsum__ docsum___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/entrez2/Makefile.entrez2.lib b/src/objects/entrez2/Makefile.entrez2.lib
-index 4507f72..4c47ad3 100644
---- a/src/objects/entrez2/Makefile.entrez2.lib
-+++ b/src/objects/entrez2/Makefile.entrez2.lib
-@@ -2,3 +2,5 @@ WATCHERS = lavr
-
- LIB = entrez2
- SRC = entrez2__ entrez2___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/entrez2/Makefile.entrez2cli.lib b/src/objects/entrez2/Makefile.entrez2cli.lib
-index 42a4649..2fdcc6f 100644
---- a/src/objects/entrez2/Makefile.entrez2cli.lib
-+++ b/src/objects/entrez2/Makefile.entrez2cli.lib
-@@ -4,3 +4,5 @@ ASN_DEP = entrez2
-
- LIB = entrez2cli
- SRC = entrez2_client entrez2_client_
-+
-+DLL_LIB = xncbi xconnect entrez2
-diff --git a/src/objects/entrezgene/Makefile.entrezgene.lib b/src/objects/entrezgene/Makefile.entrezgene.lib
-index a1bd4f4..27319c3 100644
---- a/src/objects/entrezgene/Makefile.entrezgene.lib
-+++ b/src/objects/entrezgene/Makefile.entrezgene.lib
-@@ -1,2 +1,4 @@
- LIB = entrezgene
- SRC = entrezgene__ entrezgene___
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/featdef/Makefile.featdef.lib b/src/objects/featdef/Makefile.featdef.lib
-index 51c7c8d..e603711 100644
---- a/src/objects/featdef/Makefile.featdef.lib
-+++ b/src/objects/featdef/Makefile.featdef.lib
-@@ -1,2 +1,4 @@
- LIB = featdef
- SRC = featdef__ featdef___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/gbseq/Makefile.gbseq.lib b/src/objects/gbseq/Makefile.gbseq.lib
-index 9dabdeb..4b27881 100644
---- a/src/objects/gbseq/Makefile.gbseq.lib
-+++ b/src/objects/gbseq/Makefile.gbseq.lib
-@@ -1,2 +1,4 @@
- LIB = gbseq
- SRC = gbseq__ gbseq___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/general/Makefile.general.lib b/src/objects/general/Makefile.general.lib
-index 951304f..3be083d 100644
---- a/src/objects/general/Makefile.general.lib
-+++ b/src/objects/general/Makefile.general.lib
-@@ -1,2 +1,4 @@
- LIB = general
- SRC = general__ general___ uoconv
-+
-+DLL_LIB = xser xncbi xutil
-diff --git a/src/objects/genomecoll/Makefile.genome_collection.lib b/src/objects/genomecoll/Makefile.genome_collection.lib
-index f039af6..f6b41a7 100644
---- a/src/objects/genomecoll/Makefile.genome_collection.lib
-+++ b/src/objects/genomecoll/Makefile.genome_collection.lib
-@@ -4,3 +4,5 @@ LIB = genome_collection
- SRC = genome_collection__ genome_collection___
-
- WATCHERS = dicuccio
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/homologene/Makefile.homologene.lib b/src/objects/homologene/Makefile.homologene.lib
-index 15d13ad..d44b2e3 100644
---- a/src/objects/homologene/Makefile.homologene.lib
-+++ b/src/objects/homologene/Makefile.homologene.lib
-@@ -4,3 +4,5 @@
-
- LIB = homologene
- SRC = homologene__ homologene___
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/id1/Makefile.id1.lib b/src/objects/id1/Makefile.id1.lib
-index d60c728..bf98427 100644
---- a/src/objects/id1/Makefile.id1.lib
-+++ b/src/objects/id1/Makefile.id1.lib
-@@ -4,3 +4,5 @@ LIB = id1
- SRC = id1__ id1___
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xser seqset
-diff --git a/src/objects/id1/Makefile.id1cli.lib b/src/objects/id1/Makefile.id1cli.lib
-index e87ea83..745c5cb 100644
---- a/src/objects/id1/Makefile.id1cli.lib
-+++ b/src/objects/id1/Makefile.id1cli.lib
-@@ -4,3 +4,5 @@ LIB = id1cli
- SRC = id1_client id1_client_
-
- WATCHERS = vasilche
-+
-+DLL_LIB = id1 xconnect
-diff --git a/src/objects/id2/Makefile.id2.lib b/src/objects/id2/Makefile.id2.lib
-index 09d8b36..1e74a58 100644
---- a/src/objects/id2/Makefile.id2.lib
-+++ b/src/objects/id2/Makefile.id2.lib
-@@ -2,3 +2,5 @@ LIB = id2
- SRC = id2__ id2___
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xser seq seqsplit
-diff --git a/src/objects/id2/Makefile.id2cli.lib b/src/objects/id2/Makefile.id2cli.lib
-index 5d41f23..ccec62a 100644
---- a/src/objects/id2/Makefile.id2cli.lib
-+++ b/src/objects/id2/Makefile.id2cli.lib
-@@ -4,3 +4,5 @@ LIB = id2cli
- SRC = id2_client id2_client_
-
- WATCHERS = vasilche
-+
-+DLL_LIB = id2 xconnect
-diff --git a/src/objects/insdseq/Makefile.insdseq.lib b/src/objects/insdseq/Makefile.insdseq.lib
-index fa729b7..5754057 100644
---- a/src/objects/insdseq/Makefile.insdseq.lib
-+++ b/src/objects/insdseq/Makefile.insdseq.lib
-@@ -1,2 +1,4 @@
- LIB = insdseq
- SRC = insdseq__ insdseq___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/macro/Makefile.macro.lib b/src/objects/macro/Makefile.macro.lib
-index 3a0a7c0..25a3b73 100644
---- a/src/objects/macro/Makefile.macro.lib
-+++ b/src/objects/macro/Makefile.macro.lib
-@@ -2,3 +2,5 @@
-
- LIB = macro
- SRC = macro__ macro___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/medlars/Makefile.medlars.lib b/src/objects/medlars/Makefile.medlars.lib
-index 3a6d0cd..5c8e00e 100644
---- a/src/objects/medlars/Makefile.medlars.lib
-+++ b/src/objects/medlars/Makefile.medlars.lib
-@@ -1,2 +1,4 @@
- LIB = medlars
- SRC = medlars__ medlars___
-+
-+DLL_LIB = xser biblio
-diff --git a/src/objects/medline/Makefile.medline.lib b/src/objects/medline/Makefile.medline.lib
-index ea28066..eb42aa4 100644
---- a/src/objects/medline/Makefile.medline.lib
-+++ b/src/objects/medline/Makefile.medline.lib
-@@ -1,2 +1,4 @@
- LIB = medline
- SRC = medline__ medline___
-+
-+DLL_LIB = general biblio
-diff --git a/src/objects/mim/Makefile.mim.lib b/src/objects/mim/Makefile.mim.lib
-index c2cd50e..2fed8f4 100644
---- a/src/objects/mim/Makefile.mim.lib
-+++ b/src/objects/mim/Makefile.mim.lib
-@@ -1,2 +1,4 @@
- LIB = mim
- SRC = mim__ mim___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/mla/Makefile.mla.lib b/src/objects/mla/Makefile.mla.lib
-index a748f68..5b5523a 100644
---- a/src/objects/mla/Makefile.mla.lib
-+++ b/src/objects/mla/Makefile.mla.lib
-@@ -1,2 +1,4 @@
- LIB = mla
- SRC = mla__ mla___
-+
-+DLL_LIB = xser medline pubmed pub medlars
-diff --git a/src/objects/mla/Makefile.mlacli.lib b/src/objects/mla/Makefile.mlacli.lib
-index 48af427..4cee3ac 100644
---- a/src/objects/mla/Makefile.mlacli.lib
-+++ b/src/objects/mla/Makefile.mlacli.lib
-@@ -2,3 +2,5 @@ ASN_DEP = mla
-
- LIB = mlacli
- SRC = mla_client mla_client_
-+
-+DLL_LIB = xncbi xconnect mla
-diff --git a/src/objects/mmdb/Makefile.mmdb.lib b/src/objects/mmdb/Makefile.mmdb.lib
-index 6fc8e25..5c6c100 100644
---- a/src/objects/mmdb/Makefile.mmdb.lib
-+++ b/src/objects/mmdb/Makefile.mmdb.lib
-@@ -8,3 +8,5 @@ CPPFLAGS = -I$(srcdir) -I$(top_srcdir)/src/objects/mmdb $(ORIG_CPPFLAGS)
-
- LIB = mmdb
- SRC = $(ASN:%=%__) $(ASN:%=%___)
-+
-+DLL_LIB = xser pub seq
-diff --git a/src/objects/ncbimime/Makefile.ncbimime.lib b/src/objects/ncbimime/Makefile.ncbimime.lib
-index 93cafdf..1360ade 100644
---- a/src/objects/ncbimime/Makefile.ncbimime.lib
-+++ b/src/objects/ncbimime/Makefile.ncbimime.lib
-@@ -1,2 +1,4 @@
- LIB = ncbimime
- SRC = ncbimime__ ncbimime___
-+
-+DLL_LIB = mmdb cn3d seqset cdd
-diff --git a/src/objects/objprt/Makefile.objprt.lib b/src/objects/objprt/Makefile.objprt.lib
-index 40d6b09..c00e6d2 100644
---- a/src/objects/objprt/Makefile.objprt.lib
-+++ b/src/objects/objprt/Makefile.objprt.lib
-@@ -1,2 +1,4 @@
- LIB = objprt
- SRC = objprt__ objprt___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/omssa/Makefile.omssa.lib b/src/objects/omssa/Makefile.omssa.lib
-index b79617f..e1d4a9e 100644
---- a/src/objects/omssa/Makefile.omssa.lib
-+++ b/src/objects/omssa/Makefile.omssa.lib
-@@ -2,3 +2,5 @@ APP_DEP = seq
-
- LIB = omssa
- SRC = omssa__ omssa___
-+
-+DLL_LIB = seq
-diff --git a/src/objects/pcassay/Makefile.pcassay.lib b/src/objects/pcassay/Makefile.pcassay.lib
-index 1086865..587adb5 100644
---- a/src/objects/pcassay/Makefile.pcassay.lib
-+++ b/src/objects/pcassay/Makefile.pcassay.lib
-@@ -1,2 +1,4 @@
- LIB = pcassay
- SRC = pcassay__ pcassay___
-+
-+DLL_LIB = xser pcsubstance seq
-diff --git a/src/objects/pcsubstance/Makefile.pcsubstance.lib b/src/objects/pcsubstance/Makefile.pcsubstance.lib
-index b36802e..c3f6a39 100644
---- a/src/objects/pcsubstance/Makefile.pcsubstance.lib
-+++ b/src/objects/pcsubstance/Makefile.pcsubstance.lib
-@@ -1,2 +1,4 @@
- LIB = pcsubstance
- SRC = pcsubstance__ pcsubstance___
-+
-+DLL_LIB = xser general pub
-diff --git a/src/objects/proj/Makefile.proj.lib b/src/objects/proj/Makefile.proj.lib
-index c5bb3d3..fbde99a 100644
---- a/src/objects/proj/Makefile.proj.lib
-+++ b/src/objects/proj/Makefile.proj.lib
-@@ -1,2 +1,4 @@
- LIB = proj
- SRC = proj__ proj___
-+
-+DLL_LIB = xser pubmed seqset
-diff --git a/src/objects/pub/Makefile.pub.lib b/src/objects/pub/Makefile.pub.lib
-index 78c12e1..9baa08d 100644
---- a/src/objects/pub/Makefile.pub.lib
-+++ b/src/objects/pub/Makefile.pub.lib
-@@ -1,2 +1,4 @@
- LIB = pub
- SRC = pub__ pub___
-+
-+DLL_LIB = medline biblio
-diff --git a/src/objects/pubmed/Makefile.pubmed.lib b/src/objects/pubmed/Makefile.pubmed.lib
-index 8b8d553..46e3125 100644
---- a/src/objects/pubmed/Makefile.pubmed.lib
-+++ b/src/objects/pubmed/Makefile.pubmed.lib
-@@ -1,2 +1,4 @@
- LIB = pubmed
- SRC = pubmed__ pubmed___
-+
-+DLL_LIB = xser medline
-diff --git a/src/objects/remap/Makefile.remap.lib b/src/objects/remap/Makefile.remap.lib
-index 9a35d90..1256648 100644
---- a/src/objects/remap/Makefile.remap.lib
-+++ b/src/objects/remap/Makefile.remap.lib
-@@ -1,2 +1,4 @@
- LIB = remap
- SRC = remap__ remap___
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/remap/Makefile.remapcli.lib b/src/objects/remap/Makefile.remapcli.lib
-index e45f34f..2751bf9 100644
---- a/src/objects/remap/Makefile.remapcli.lib
-+++ b/src/objects/remap/Makefile.remapcli.lib
-@@ -4,3 +4,5 @@ ASN_DEP = remap
-
- LIB = remapcli
- SRC = remap_client remap_client_
-+
-+DLL_LIB = xncbi xconnect remap
-diff --git a/src/objects/scoremat/Makefile.scoremat.lib b/src/objects/scoremat/Makefile.scoremat.lib
-index 62e01f5..93bb071 100644
---- a/src/objects/scoremat/Makefile.scoremat.lib
-+++ b/src/objects/scoremat/Makefile.scoremat.lib
-@@ -1,2 +1,4 @@
- LIB = scoremat
- SRC = scoremat__ scoremat___
-+
-+DLL_LIB = seqset seq
-diff --git a/src/objects/seq/Makefile.seq.lib b/src/objects/seq/Makefile.seq.lib
-index 1b5edc5..30ef316 100644
---- a/src/objects/seq/Makefile.seq.lib
-+++ b/src/objects/seq/Makefile.seq.lib
-@@ -13,3 +13,5 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \
- seq_loc_from_string seq_loc_reverse_complementer
-
- WATCHERS = vasilche grichenk
-+
-+DLL_LIB = general seqcode pub sequtil biblio xser xncbi xutil
-diff --git a/src/objects/seqcode/Makefile.seqcode.lib b/src/objects/seqcode/Makefile.seqcode.lib
-index dc9d60e..dabd95b 100644
---- a/src/objects/seqcode/Makefile.seqcode.lib
-+++ b/src/objects/seqcode/Makefile.seqcode.lib
-@@ -1,2 +1,4 @@
- LIB = seqcode
- SRC = seqcode__ seqcode___
-+
-+DLL_LIB = xncbi xser
-diff --git a/src/objects/seqedit/Makefile.seqedit.lib b/src/objects/seqedit/Makefile.seqedit.lib
-index 283a9b7..520b0bb 100644
---- a/src/objects/seqedit/Makefile.seqedit.lib
-+++ b/src/objects/seqedit/Makefile.seqedit.lib
-@@ -1,3 +1,4 @@
- LIB = seqedit
- SRC = seqedit__ seqedit___
-
-+DLL_LIB = xser seq seqset
-diff --git a/src/objects/seqset/Makefile.seqset.lib b/src/objects/seqset/Makefile.seqset.lib
-index 87f16d0..febce67 100644
---- a/src/objects/seqset/Makefile.seqset.lib
-+++ b/src/objects/seqset/Makefile.seqset.lib
-@@ -1,2 +1,3 @@
- LIB = seqset
- SRC = seqset__ seqset___ gb_release_file
-+DLL_LIB = xser seq
-diff --git a/src/objects/seqsplit/Makefile.seqsplit.lib b/src/objects/seqsplit/Makefile.seqsplit.lib
-index 87ae869..1743321 100644
---- a/src/objects/seqsplit/Makefile.seqsplit.lib
-+++ b/src/objects/seqsplit/Makefile.seqsplit.lib
-@@ -2,3 +2,5 @@ LIB = seqsplit
- SRC = seqsplit__ seqsplit___
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xser seq seqset
-diff --git a/src/objects/seqtest/Makefile.seqtest.lib b/src/objects/seqtest/Makefile.seqtest.lib
-index 609a12c..e3d1e4b 100644
---- a/src/objects/seqtest/Makefile.seqtest.lib
-+++ b/src/objects/seqtest/Makefile.seqtest.lib
-@@ -4,3 +4,5 @@ ASN = seqtest
-
- LIB = seqtest
- SRC = $(ASN:%=%__) $(ASN:%=%___)
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/submit/Makefile.submit.lib b/src/objects/submit/Makefile.submit.lib
-index 74798f8..c74707c 100644
---- a/src/objects/submit/Makefile.submit.lib
-+++ b/src/objects/submit/Makefile.submit.lib
-@@ -1,2 +1,3 @@
- LIB = submit
- SRC = submit__ submit___
-+DLL_LIB = xser xncbi seq biblio seqset
-diff --git a/src/objects/taxon1/Makefile.taxon1.lib b/src/objects/taxon1/Makefile.taxon1.lib
-index f0f9c66..35d6a61 100644
---- a/src/objects/taxon1/Makefile.taxon1.lib
-+++ b/src/objects/taxon1/Makefile.taxon1.lib
-@@ -4,3 +4,5 @@ LIB = taxon1
- SRC = taxon1__ taxon1___ taxon1 cache utils ctreecont
-
- WATCHERS = domrach
-+
-+DLL_LIB = xser seq xconnect
-diff --git a/src/objects/taxon3/Makefile.taxon3.lib b/src/objects/taxon3/Makefile.taxon3.lib
-index 7e4c93d..00be2c0 100644
---- a/src/objects/taxon3/Makefile.taxon3.lib
-+++ b/src/objects/taxon3/Makefile.taxon3.lib
-@@ -4,3 +4,5 @@ LIB = taxon3
- SRC = taxon3__ taxon3___ taxon3
-
- WATCHERS = bollin
-+
-+DLL_LIB = connect xser xconnect seq
-diff --git a/src/objects/tinyseq/Makefile.tinyseq.lib b/src/objects/tinyseq/Makefile.tinyseq.lib
-index 1c7ccf3..e1954cc 100644
---- a/src/objects/tinyseq/Makefile.tinyseq.lib
-+++ b/src/objects/tinyseq/Makefile.tinyseq.lib
-@@ -1,2 +1,4 @@
- LIB = tinyseq
- SRC = tinyseq__ tinyseq___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/valerr/Makefile.valerr.lib b/src/objects/valerr/Makefile.valerr.lib
-index b202355..9699bb2 100644
---- a/src/objects/valerr/Makefile.valerr.lib
-+++ b/src/objects/valerr/Makefile.valerr.lib
-@@ -2,3 +2,5 @@ LIB = valerr
- SRC = valerr__ valerr___
-
- ASN_DEP = seqset
-+
-+DLL_LIB = xser
-diff --git a/src/objects/valid/Makefile.valid.lib b/src/objects/valid/Makefile.valid.lib
-index 86a00a0..64226d6 100644
---- a/src/objects/valid/Makefile.valid.lib
-+++ b/src/objects/valid/Makefile.valid.lib
-@@ -1,3 +1,5 @@
- # $Id: Makefile.valid.lib 156738 2009-04-07 16:35:10Z ucko $
- LIB = valid
- SRC = valid__ valid___
-+
-+DLL_LIB = xser xregexp
-diff --git a/src/objects/variation/Makefile.variation.lib b/src/objects/variation/Makefile.variation.lib
-index f21f84a..9ba5e9d 100644
---- a/src/objects/variation/Makefile.variation.lib
-+++ b/src/objects/variation/Makefile.variation.lib
-@@ -1,2 +1,3 @@
- LIB = variation
- SRC = variation__ variation___
-+DLL_LIB = xser general seq
-diff --git a/src/objmgr/split/Makefile.id2_split.lib b/src/objmgr/split/Makefile.id2_split.lib
-index fafa70a..8a53975 100644
---- a/src/objmgr/split/Makefile.id2_split.lib
-+++ b/src/objmgr/split/Makefile.id2_split.lib
-@@ -17,6 +17,6 @@ LIB = id2_split
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
-
--DLL_LIB = $(SOBJMGR_LIBS)
-+DLL_LIB = $(SOBJMGR_LIBS) seqsplit xcompress
-
- WATCHERS = vasilche
-diff --git a/src/objmgr/util/Makefile.util.lib b/src/objmgr/util/Makefile.util.lib
-index 90eeee0..138e836 100644
---- a/src/objmgr/util/Makefile.util.lib
-+++ b/src/objmgr/util/Makefile.util.lib
-@@ -10,3 +10,4 @@ LIB = xobjutil
-
- WATCHERS = ucko vasilche
-
-+DLL_LIB = xser xobjmgr
-diff --git a/src/objtools/align/Makefile.xalntool.lib b/src/objtools/align/Makefile.xalntool.lib
-index cb9846d..9c2a8f9 100644
---- a/src/objtools/align/Makefile.xalntool.lib
-+++ b/src/objtools/align/Makefile.xalntool.lib
-@@ -6,3 +6,5 @@ ASN_DEP = seqset
-
- LIB = xalntool
- SRC = alngraphic
-+
-+DLL_LIB = access dbapi_driver general seq xhtml xncbi xobjmgr xobjutil xser # align_format axf blastinput
-diff --git a/src/objtools/align_format/Makefile.align_format.lib b/src/objtools/align_format/Makefile.align_format.lib
-index 1ec5bf0..6da8514 100644
---- a/src/objtools/align_format/Makefile.align_format.lib
-+++ b/src/objtools/align_format/Makefile.align_format.lib
-@@ -20,3 +20,5 @@ CPPFLAGS = -DNCBI_MODULE=BLASTFORMAT $(ORIG_CPPFLAGS)
- # LIB_OR_DLL = dll
-
- WATCHERS = zaretska jianye madden camacho fongah2
-+
-+DLL_LIB = seqdb blastdb xser xhtml gene_info xnetblast blast_services ncbi_xloader_genbank xalnmgr xcgi xobjread xobjutil
-diff --git a/src/objtools/alnmgr/Makefile.alnmgr.lib b/src/objtools/alnmgr/Makefile.alnmgr.lib
-index e32c351..41355ff 100644
---- a/src/objtools/alnmgr/Makefile.alnmgr.lib
-+++ b/src/objtools/alnmgr/Makefile.alnmgr.lib
-@@ -12,3 +12,4 @@ SRC = aln_builders aln_converters aln_generators aln_seqid aln_serial \
-
- WATCHERS = todorov dicuccio grichenk
-
-+DLL_LIB = tables dbapi_driver ncbi_xcache_bdb seq seqset sequtil xncbi xobjmgr xobjutil xser # align_format axf
-diff --git a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-index 62f01fd..f7768e0 100644
---- a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-+++ b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-@@ -17,3 +17,5 @@ CPPFLAGS = -DNCBI_MODULE=BLASTDB $(ORIG_CPPFLAGS)
- # CXXFLAGS = $(FAST_CXXFLAGS)
- #
- # LIB_OR_DLL = dll
-+
-+DLL_LIB = xncbi xser xobjutil seq seqdb
-diff --git a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-index 3a92e3e..79a75b9 100644
---- a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-+++ b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-@@ -5,3 +5,5 @@ WATCHERS = camacho
- CPPFLAGS = -DNCBI_MODULE=GENEINFO $(ORIG_CPPFLAGS)
- LIB = gene_info
- SRC = gene_info gene_info_reader file_utils
-+
-+DLL_LIB = xncbi
-diff --git a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-index a067ae2..e1a6d3e 100644
---- a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-+++ b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-@@ -7,3 +7,5 @@ LIB = gene_info_writer
- SRC = gene_info_writer
-
- ASN_DEP = blastdb
-+
-+DLL_LIB = gene_info xncbi seqdb
-diff --git a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-index 9c13307..65822c6 100644
---- a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-+++ b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-@@ -30,3 +30,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = maning camacho
-+
-+DLL_LIB = blastdb xobjmgr
-diff --git a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-index 3b15ed6..77f5202 100644
---- a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-+++ b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-@@ -14,3 +14,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = maning camacho fongah2
-+
-+DLL_LIB = seq blastdb seqdb xobjmgr xobjread xutil
-diff --git a/src/objtools/blast/services/Makefile.blast_services.lib b/src/objtools/blast/services/Makefile.blast_services.lib
-index ceba356..d2bd900 100644
---- a/src/objtools/blast/services/Makefile.blast_services.lib
-+++ b/src/objtools/blast/services/Makefile.blast_services.lib
-@@ -13,3 +13,4 @@ CPPFLAGS = -DNCBI_MODULE=NETBLAST $(ORIG_CPPFLAGS)
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = xncbi xser xnetblast xnetblastcli
-diff --git a/src/objtools/cddalignview/Makefile.cddalignview.lib b/src/objtools/cddalignview/Makefile.cddalignview.lib
-index 8e39baa..f4d3a35 100644
---- a/src/objtools/cddalignview/Makefile.cddalignview.lib
-+++ b/src/objtools/cddalignview/Makefile.cddalignview.lib
-@@ -11,3 +11,5 @@ SRC = \
- cav_seqset
-
- LIB = xcddalignview
-+
-+DLL_LIB = cdd dbapi_driver general ncbimime seq seqset xncbi xser # align_format axf ncbi_xloader_bam
-diff --git a/src/objtools/cleanup/Makefile.cleanup.lib b/src/objtools/cleanup/Makefile.cleanup.lib
-index 291948f..adecac0 100644
---- a/src/objtools/cleanup/Makefile.cleanup.lib
-+++ b/src/objtools/cleanup/Makefile.cleanup.lib
-@@ -10,7 +10,7 @@ SRC = autogenerated_cleanup autogenerated_extended_cleanup cleanup \
- cleanup_utils \
- newcleanupp
-
--DLL_LIB = xregexp $(PCRE_LIB)
-+DLL_LIB = xregexp $(PCRE_LIB) access biblio general pub seq seqset sequtil submit xobjmgr xobjutil xser
- LIB = xcleanup
-
- LIBS = $(PCRE_LIBS)
-diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-index 4fb6117..934a3b6 100644
---- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-@@ -8,3 +8,6 @@ CPPFLAGS = -DNCBI_MODULE=BLASTDB $(ORIG_CPPFLAGS)
- ASN_DEP = blastdb seqset
-
- WATCHERS = camacho
-+
-+DLL_LIB = seqdb
-+
-diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-index 243467f..3a2115c 100644
---- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-@@ -8,3 +8,5 @@ CPPFLAGS = -DNCBI_MODULE=BLASTDB $(ORIG_CPPFLAGS)
- ASN_DEP = blastdb xnetblast
-
- WATCHERS = camacho
-+
-+DLL_LIB = blast_services ncbi_xloader_blastdb xobjmgr
-diff --git a/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib b/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
-index a51042b..fa92fc9 100644
---- a/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
-+++ b/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
-@@ -9,3 +9,5 @@ LIB = ncbi_xloader_cdd
- SRC = cdd
-
- ASN_DEP = seqset
-+
-+DLL_LIB = dbapi_driver general seq seqset xconnect xncbi xobjmgr xser # align_format axf ncbi_xloader_bam
-diff --git a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-index f3bb947..90d3af9 100644
---- a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-+++ b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-@@ -12,7 +12,7 @@ LIB = ncbi_xreader
- LIB_OR_DLL = both
-
- # Dependencies for shared library
--DLL_LIB =
-+DLL_LIB = xcompress xobjmgr seqsplit xconnect id1 id2
- DLL_DLIB = $(GENBANK_READER_LDEP)
-
- WATCHERS = vasilche
-diff --git a/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib b/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
-index 0a29cbf..74c30dc 100644
---- a/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
-+++ b/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
-@@ -15,3 +15,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS) $(Z_INCLUDE)
- # DLL_LIB = xconnect ncbi_xreader$(DLL)
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xncbi gene_info id2 ncbi_xreader xconnect xser
-diff --git a/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib b/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
-index 8d09d8c..d6040ed 100644
---- a/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
-+++ b/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
-@@ -7,3 +7,5 @@ ASN_DEP = seq seqset seqedit
-
-
- WATCHERS = vasilche
-+
-+DLL_LIB = dbapi_driver seq seqedit seqset xncbi xobjmgr xser # axf
-diff --git a/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib b/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
-index d2debd5..33fed34 100644
---- a/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
-+++ b/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
-@@ -9,3 +9,5 @@ LIB = ncbi_xloader_trace
- SRC = trace_chgr
-
- ASN_DEP = id1
-+
-+DLL_LIB = dbapi_driver general id1 id1cli seq xncbi xobjmgr xser # align_format axf
-diff --git a/src/objtools/edit/Makefile.edit.lib b/src/objtools/edit/Makefile.edit.lib
-index 7ce0d11..f5458c5 100644
---- a/src/objtools/edit/Makefile.edit.lib
-+++ b/src/objtools/edit/Makefile.edit.lib
-@@ -11,3 +11,5 @@ LIB = xobjedit
- ASN_DEP = seqset
-
- WATCHERS = bollin
-+
-+DLL_LIB = xncbi seq xobjutil xobjmgr
-diff --git a/src/objtools/eutils/api/Makefile.eutils.lib b/src/objtools/eutils/api/Makefile.eutils.lib
-index da71ea9..b444e72 100644
---- a/src/objtools/eutils/api/Makefile.eutils.lib
-+++ b/src/objtools/eutils/api/Makefile.eutils.lib
-@@ -10,3 +10,5 @@ ASN_DEP = einfo esearch egquery epost elink esummary espell uilist \
- ehistory
-
- WATCHERS = grichenk
-+
-+DLL_LIB = dbapi_driver xconnect xncbi xser # align_format axf ncbi_xloader_bam
-diff --git a/src/objtools/eutils/egquery/Makefile.egquery.lib b/src/objtools/eutils/egquery/Makefile.egquery.lib
-index 82b4ed0..7030a29 100644
---- a/src/objtools/eutils/egquery/Makefile.egquery.lib
-+++ b/src/objtools/eutils/egquery/Makefile.egquery.lib
-@@ -4,3 +4,5 @@ LIB = egquery
- SRC = egquery__ egquery___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/ehistory/Makefile.ehistory.lib b/src/objtools/eutils/ehistory/Makefile.ehistory.lib
-index f99ca0f..5683a74 100644
---- a/src/objtools/eutils/ehistory/Makefile.ehistory.lib
-+++ b/src/objtools/eutils/ehistory/Makefile.ehistory.lib
-@@ -4,3 +4,5 @@ LIB = ehistory
- SRC = ehistory__ ehistory___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/einfo/Makefile.einfo.lib b/src/objtools/eutils/einfo/Makefile.einfo.lib
-index e18413d..7eaee71 100644
---- a/src/objtools/eutils/einfo/Makefile.einfo.lib
-+++ b/src/objtools/eutils/einfo/Makefile.einfo.lib
-@@ -4,3 +4,5 @@ LIB = einfo
- SRC = einfo__ einfo___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/elink/Makefile.elink.lib b/src/objtools/eutils/elink/Makefile.elink.lib
-index 87f352c..692835c 100644
---- a/src/objtools/eutils/elink/Makefile.elink.lib
-+++ b/src/objtools/eutils/elink/Makefile.elink.lib
-@@ -4,3 +4,5 @@ LIB = elink
- SRC = elink__ elink___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/epost/Makefile.epost.lib b/src/objtools/eutils/epost/Makefile.epost.lib
-index 4a456ed..d73f41b 100644
---- a/src/objtools/eutils/epost/Makefile.epost.lib
-+++ b/src/objtools/eutils/epost/Makefile.epost.lib
-@@ -4,3 +4,5 @@ LIB = epost
- SRC = epost__ epost___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/esearch/Makefile.esearch.lib b/src/objtools/eutils/esearch/Makefile.esearch.lib
-index bb5b64b..71912da 100644
---- a/src/objtools/eutils/esearch/Makefile.esearch.lib
-+++ b/src/objtools/eutils/esearch/Makefile.esearch.lib
-@@ -4,3 +4,5 @@ LIB = esearch
- SRC = esearch__ esearch___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/espell/Makefile.espell.lib b/src/objtools/eutils/espell/Makefile.espell.lib
-index 7cf1a34..25be846 100644
---- a/src/objtools/eutils/espell/Makefile.espell.lib
-+++ b/src/objtools/eutils/espell/Makefile.espell.lib
-@@ -4,3 +4,5 @@ LIB = espell
- SRC = espell__ espell___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/esummary/Makefile.esummary.lib b/src/objtools/eutils/esummary/Makefile.esummary.lib
-index 4d3e058..1f74c06 100644
---- a/src/objtools/eutils/esummary/Makefile.esummary.lib
-+++ b/src/objtools/eutils/esummary/Makefile.esummary.lib
-@@ -4,3 +4,5 @@ LIB = esummary
- SRC = esummary__ esummary___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/linkout/Makefile.linkout.lib b/src/objtools/eutils/linkout/Makefile.linkout.lib
-index 19b2b8a..77dcc3c 100644
---- a/src/objtools/eutils/linkout/Makefile.linkout.lib
-+++ b/src/objtools/eutils/linkout/Makefile.linkout.lib
-@@ -4,3 +4,5 @@ SRC = linkout__ linkout___
- LIB = linkout
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/uilist/Makefile.uilist.lib b/src/objtools/eutils/uilist/Makefile.uilist.lib
-index b49c3c5..2ee63f0 100644
---- a/src/objtools/eutils/uilist/Makefile.uilist.lib
-+++ b/src/objtools/eutils/uilist/Makefile.uilist.lib
-@@ -4,3 +4,5 @@ SRC = uilist__ uilist___
- LIB = uilist
-
- WATCHERS = grichenk
-+
-+DLL_LIB = access dbapi_driver xncbi xser # align_format axf
-diff --git a/src/objtools/format/Makefile.xformat.lib b/src/objtools/format/Makefile.xformat.lib
-index 041a43a..bda6c63 100644
---- a/src/objtools/format/Makefile.xformat.lib
-+++ b/src/objtools/format/Makefile.xformat.lib
-@@ -19,3 +19,5 @@ SRC = accession_item basecount_item comment_item contig_item date_item \
- gather_iter html_anchor_item inst_info_map gene_finder flat_qual_slots
-
- WATCHERS = ludwigf dicuccio kornbluh
-+
-+DLL_LIB = submit connect xncbi gbseq xobjmgr xobjutil xalnmgr xconnect
-diff --git a/src/objtools/lds/Makefile.lds.lib b/src/objtools/lds/Makefile.lds.lib
-index e371035..689cfb4 100644
---- a/src/objtools/lds/Makefile.lds.lib
-+++ b/src/objtools/lds/Makefile.lds.lib
-@@ -9,6 +9,6 @@ SRC = lds lds_reader lds_query \
- lds_coreobjreader lds_files lds_object lds_manager
-
- # Dependencies for shared library
--DLL_LIB = bdb
-+DLL_LIB = bdb seq xobjread xobjmgr xobjutil
-
- WATCHERS = vasilche
-diff --git a/src/objtools/manip/Makefile.xobjmanip.lib b/src/objtools/manip/Makefile.xobjmanip.lib
-index 300ceb2..4a81ac9 100644
---- a/src/objtools/manip/Makefile.xobjmanip.lib
-+++ b/src/objtools/manip/Makefile.xobjmanip.lib
-@@ -6,3 +6,5 @@ LIB = xobjmanip
- SRC = sage_manip
-
- WATCHERS = dicuccio
-+
-+DLL_LIB = xncbi general
-diff --git a/src/objtools/readers/Makefile.xobjread.lib b/src/objtools/readers/Makefile.xobjread.lib
-index 8c9d2bf..28bbb88 100644
---- a/src/objtools/readers/Makefile.xobjread.lib
-+++ b/src/objtools/readers/Makefile.xobjread.lib
-@@ -19,5 +19,4 @@ SRC = read_util format_guess_ex \
- best_feat_finder source_mod_parser fasta_exception
-
-
--DLL_LIB = creaders
--
-+DLL_LIB = creaders xncbi seq biblio seqset
-diff --git a/src/objtools/readers/Makefile.xobjreadex.lib b/src/objtools/readers/Makefile.xobjreadex.lib
-index 85eefe2..9f317ae 100644
---- a/src/objtools/readers/Makefile.xobjreadex.lib
-+++ b/src/objtools/readers/Makefile.xobjreadex.lib
-@@ -8,4 +8,4 @@ LIB = xobjreadex
- SRC = glimmer_reader idmapper idmapper_builtin idmapper_config \
- idmapper_database source_mod_parser_wrapper
-
--DLL_LIB = xobjread
-+DLL_LIB = xobjread xncbi xutil seq xobjmgr xobjutil
-diff --git a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-index 8115a7f..f46b506 100644
---- a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-+++ b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-@@ -12,6 +12,6 @@ mask_writer_seqloc \
- mask_writer_blastdb_maskinfo
-
- ASN_DEP = seqset
--DLL_LIB = seqdb blastdb
-+DLL_LIB = seqdb blastdb xobjread xobjutil
-
- WATCHERS = morgulis camacho
-diff --git a/src/objtools/simple/Makefile.xobjsimple.lib b/src/objtools/simple/Makefile.xobjsimple.lib
-index dab25d6..f676dc7 100644
---- a/src/objtools/simple/Makefile.xobjsimple.lib
-+++ b/src/objtools/simple/Makefile.xobjsimple.lib
-@@ -10,3 +10,4 @@ ASN_DEP = seqset
- LIB = xobjsimple
- SRC = simple_om
-
-+DLL_LIB = xobjmgr ncbi_xloader_genbank
-diff --git a/src/objtools/snputil/Makefile.snputil.lib b/src/objtools/snputil/Makefile.snputil.lib
-index a259eca..dbcc9cd 100644
---- a/src/objtools/snputil/Makefile.snputil.lib
-+++ b/src/objtools/snputil/Makefile.snputil.lib
-@@ -9,3 +9,5 @@ SRC = snp_utils snp_bitfield \
- ASN_DEP = seqset variation
-
- WATCHERS = rudnev
-+
-+DLL_LIB = general seq xncbi xobjmgr xser
-diff --git a/src/objtools/validator/Makefile.validator.lib b/src/objtools/validator/Makefile.validator.lib
-index 4b78f86..63c2386 100644
---- a/src/objtools/validator/Makefile.validator.lib
-+++ b/src/objtools/validator/Makefile.validator.lib
-@@ -12,3 +12,5 @@ LIB = xvalidate
- ASN_DEP = general biblio pub seq seqset submit taxon3 valerr valid
-
- WATCHERS = bollin
-+
-+DLL_LIB = xncbi xobjutil xalnmgr xformat taxon3 valerr valid
-diff --git a/src/objtools/writers/Makefile.xobjwrite.lib b/src/objtools/writers/Makefile.xobjwrite.lib
-index d27e197..5dde419 100644
---- a/src/objtools/writers/Makefile.xobjwrite.lib
-+++ b/src/objtools/writers/Makefile.xobjwrite.lib
-@@ -15,3 +15,4 @@ SRC = agp_write \
-
- WATCHERS = ludwigf boukn
-
-+DLL_LIB = xobjutil xalnmgr
-diff --git a/src/sample/app/asn/Makefile.sample_asn.lib b/src/sample/app/asn/Makefile.sample_asn.lib
-index 0db9ebd..26e6ad9 100644
---- a/src/sample/app/asn/Makefile.sample_asn.lib
-+++ b/src/sample/app/asn/Makefile.sample_asn.lib
-@@ -10,3 +10,5 @@ LIB = sample_asn
- ASN_DEP = general
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver general xncbi xser
-diff --git a/src/sample/app/soap/Makefile.soap_dataobj.lib b/src/sample/app/soap/Makefile.soap_dataobj.lib
-index 4b87f51..c398ded 100644
---- a/src/sample/app/soap/Makefile.soap_dataobj.lib
-+++ b/src/sample/app/soap/Makefile.soap_dataobj.lib
-@@ -2,3 +2,5 @@ LIB = soap_dataobj
- SRC = soap_dataobj__ soap_dataobj___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib b/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
-index f9d6103..4c22831 100644
---- a/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
-+++ b/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
-@@ -2,3 +2,5 @@ LIB = asn_sample_lib
- SRC = asn_sample_lib__ asn_sample_lib___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/sample/lib/basic/Makefile.basic_sample_lib.lib b/src/sample/lib/basic/Makefile.basic_sample_lib.lib
-index a6ba11a..364d9fc 100644
---- a/src/sample/lib/basic/Makefile.basic_sample_lib.lib
-+++ b/src/sample/lib/basic/Makefile.basic_sample_lib.lib
-@@ -5,3 +5,5 @@ SRC = basic_sample_lib
-
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi
-diff --git a/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib b/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
-index d2a27ef..a63a7e8 100644
---- a/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
-+++ b/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
-@@ -2,3 +2,5 @@ LIB = dtd_sample_lib
- SRC = dtd_sample_lib__ dtd_sample_lib___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib b/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
-index 4b7b6e2..838e8ea 100644
---- a/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
-+++ b/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
-@@ -2,3 +2,5 @@ LIB = xsd_sample_lib
- SRC = xsd_sample_lib__ xsd_sample_lib___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/serial/Makefile.serial.lib b/src/serial/Makefile.serial.lib
-index 2563b5f..efad054 100644
---- a/src/serial/Makefile.serial.lib
-+++ b/src/serial/Makefile.serial.lib
-@@ -19,3 +19,5 @@ SRC = \
- LIB = xser
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/serial/soap/Makefile.soap.lib b/src/serial/soap/Makefile.soap.lib
-index e77d4ee..3b28bc4 100644
---- a/src/serial/soap/Makefile.soap.lib
-+++ b/src/serial/soap/Makefile.soap.lib
-@@ -8,3 +8,5 @@ SRC = soap_message soap_readhook soap_writehook soap_client \
- LIB = xsoap
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi xutil xser xconnect
-diff --git a/src/serial/soap/Makefile.soap_server.lib b/src/serial/soap/Makefile.soap_server.lib
-index c961496..0ccb2f0 100644
---- a/src/serial/soap/Makefile.soap_server.lib
-+++ b/src/serial/soap/Makefile.soap_server.lib
-@@ -9,3 +9,5 @@ LIB = xsoap_server
- REQUIRES = cgi
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi xutil xcgi xsoap xser
-diff --git a/src/serial/test/Makefile.we_cpp.lib b/src/serial/test/Makefile.we_cpp.lib
-index 9877691..599ef5d 100644
---- a/src/serial/test/Makefile.we_cpp.lib
-+++ b/src/serial/test/Makefile.we_cpp.lib
-@@ -3,3 +3,4 @@ SRC = we_cpp__ we_cpp___
-
- WATCHERS = gouriano
-
-+DLL_LIB = xncbi xutil xser
-diff --git a/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib b/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
-index 4896661..8e2ad56 100644
---- a/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
-+++ b/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
-@@ -12,7 +12,7 @@ ASN_DEP = seqset seq
-
- LIB_OR_DLL = both
-
--DLL_LIB = $(SOBJMGR_LIBS) bamread$(STATIC) $(BAM_LIBS) $(CMPRS_LIB)
-+DLL_LIB = $(SOBJMGR_LIBS) bamread$(STATIC) $(BAM_LIBS) $(CMPRS_LIB) xobjreadex
- LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
-
- CPPFLAGS = $(SRA_INCLUDE) -DNCBI_XLOADER_BAM_EXPORTS $(ORIG_CPPFLAGS)
-diff --git a/src/sra/sdk/libs/align/Makefile.align-writer.lib b/src/sra/sdk/libs/align/Makefile.align-writer.lib
-index a7c4e77..0f39423 100644
---- a/src/sra/sdk/libs/align/Makefile.align-writer.lib
-+++ b/src/sra/sdk/libs/align/Makefile.align-writer.lib
-@@ -7,7 +7,7 @@ SRC = dna-reverse-cmpl reader-cmn reference-cmn reader-refseq refseq-mgr \
- writer-cmn writer-refseq writer-alignment writer-sequence writer-ref \
- writer-reference
-
--DLL_LIB = wvdb wkdb kfg kfs klib $(Z_LIB)
-+DLL_LIB = wvdb wkdb kfg kfs klib kapp $(Z_LIB)
- LIBS = $(Z_LIBS) $(ORIG_LIBS)
-
- CPPFLAGS = $(SRA_INCLUDE) $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY $(ORIG_CPPFLAGS)
-diff --git a/src/util/Makefile.util.lib b/src/util/Makefile.util.lib
-index bb93ec9..d1b2737 100644
---- a/src/util/Makefile.util.lib
-+++ b/src/util/Makefile.util.lib
-@@ -14,3 +14,5 @@ PROJ_TAG = core
- LIBS = $(ORIG_LIBS)
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi
-diff --git a/src/util/compress/api/Makefile.compress.lib b/src/util/compress/api/Makefile.compress.lib
-index ae22234..2ce803a 100644
---- a/src/util/compress/api/Makefile.compress.lib
-+++ b/src/util/compress/api/Makefile.compress.lib
-@@ -6,7 +6,7 @@ LIB = xcompress
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
-
--DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB)
-+DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB) xutil xncbi
- LIBS = $(BZ2_LIBS) $(Z_LIBS) $(LZO_LIBS)
-
- WATCHERS = ivanov
-diff --git a/src/util/qparse/Makefile.xqueryparse.lib b/src/util/qparse/Makefile.xqueryparse.lib
-index a003930..0505da7 100644
---- a/src/util/qparse/Makefile.xqueryparse.lib
-+++ b/src/util/qparse/Makefile.xqueryparse.lib
-@@ -7,3 +7,5 @@ query_parser_bison.tab.c : query_parser_bison.y
- bison -v -p ncbi_q_ -o query_parser_bison.tab.c query_parser_bison.y
-
- WATCHERS = kuznets
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/util/regexp/Makefile.regexp.lib b/src/util/regexp/Makefile.regexp.lib
-index 0f8d5e8..83a82af 100644
---- a/src/util/regexp/Makefile.regexp.lib
-+++ b/src/util/regexp/Makefile.regexp.lib
-@@ -10,3 +10,5 @@ LIB = regexp
- CPPFLAGS = -I$(includedir)/util/regexp -DHAVE_CONFIG_H $(ORIG_CPPFLAGS)
-
- WATCHERS = ivanov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/util/sequtil/Makefile.sequtil.lib b/src/util/sequtil/Makefile.sequtil.lib
-index c068a32..453c911 100644
---- a/src/util/sequtil/Makefile.sequtil.lib
-+++ b/src/util/sequtil/Makefile.sequtil.lib
-@@ -4,3 +4,5 @@ LIB = sequtil
- SRC = sequtil sequtil_convert sequtil_convert_imp sequtil_manip sequtil_tables sequtil_shared
-
- WATCHERS = shomrat
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/util/xregexp/Makefile.xregexp.lib b/src/util/xregexp/Makefile.xregexp.lib
-index 965fac4..3accea3 100644
---- a/src/util/xregexp/Makefile.xregexp.lib
-+++ b/src/util/xregexp/Makefile.xregexp.lib
-@@ -6,7 +6,7 @@ LIB = xregexp
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
-
--DLL_LIB = $(PCRE_LIB)
-+DLL_LIB = $(PCRE_LIB) xutil xncbi
- LIBS = $(PCRE_LIBS)
-
- WATCHERS = ivanov
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-as-needed.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-as-needed.patch
deleted file mode 100644
index 8213800..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-as-needed.patch
+++ /dev/null
@@ -1,1864 +0,0 @@
- src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib | 2 ++
- src/algo/align/ngalign/Makefile.xngalign.lib | 2 ++
- src/algo/align/nw/Makefile.xalgoalignnw.lib | 2 ++
- src/algo/align/prosplign/Makefile.prosplign.lib | 2 ++
- src/algo/align/splign/Makefile.xalgoalignsplign.lib | 2 ++
- src/algo/blast/api/Makefile.xblast.lib | 2 +-
- src/algo/blast/blastinput/Makefile.blastinput.lib | 2 +-
- src/algo/blast/core/Makefile.blast.lib | 2 ++
- src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib | 2 ++
- src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib | 2 ++
- src/algo/blast/format/Makefile.xblastformat.lib | 2 +-
- src/algo/blast/gumbel_params/Makefile.gumbelparams.lib | 1 +
- src/algo/cobalt/Makefile.cobalt.lib | 2 ++
- src/algo/dustmask/Makefile.xalgodustmask.lib | 1 +
- src/algo/gnomon/Makefile.gnomon.lib | 2 +-
- src/algo/ms/formats/pepxml/Makefile.pepXML.lib | 2 ++
- src/algo/ms/omssa/Makefile.xomssa.lib | 2 ++
- src/algo/phy_tree/Makefile.xalgophytree.lib | 2 +-
- src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib | 2 ++
- src/algo/segmask/Makefile.xalgosegmask.lib | 1 +
- src/algo/seqqa/Makefile.xalgoseqqa.lib | 2 ++
- src/algo/sequence/Makefile.xalgoseq.lib | 2 ++
- src/algo/structure/bma_refine/Makefile.xbma_refiner.lib | 3 +++
- src/algo/structure/cd_utils/Makefile.xcd_utils.lib | 2 +-
- src/algo/structure/struct_dp/Makefile.xstruct_dp.lib | 2 ++
- src/algo/structure/struct_util/Makefile.xstruct_util.lib | 2 ++
- src/algo/structure/threader/Makefile.xstruct_thread.lib | 2 ++
- src/algo/text/Makefile.xalgotext.lib | 2 ++
- src/algo/volume_merge/Makefile.xalgovmerge.lib | 2 ++
- src/algo/winmask/Makefile.xalgowinmask.lib | 2 ++
- src/cgi/Makefile.cgi.lib | 2 ++
- src/cgi/Makefile.fcgi.lib | 2 ++
- src/connect/Makefile.connssl.lib | 2 ++
- src/connect/Makefile.xconnect.lib | 4 ++++
- src/connect/Makefile.xthrserv.lib | 2 +-
- src/connect/Makefile.xxconnect.lib | 2 ++
- src/connect/services/Makefile.ncbi_xcache_netcache.lib | 2 +-
- src/connect/services/Makefile.xconnserv.lib | 2 +-
- src/connect/test/Makefile.conntest.lib | 2 ++
- src/corelib/Makefile.test_boost.lib | 2 ++
- src/corelib/Makefile.test_mt.lib | 2 ++
- src/corelib/test/Makefile.pbacktest.lib | 2 ++
- src/db/bdb/Makefile.bdb.lib | 4 ++++
- src/db/bdb/Makefile.ncbi_xcache_bdb.lib | 2 +-
- src/db/sqlite/Makefile.sqlitewrapp.lib | 3 +++
- src/dbapi/Makefile.dbapi.lib | 5 +++++
- src/dbapi/driver/Makefile.dbapi_driver.lib | 2 ++
- src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib | 2 ++
- src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib | 2 +-
- src/dbapi/simple/Makefile.sdbapi.lib | 1 +
- src/html/Makefile.html.lib | 2 ++
- src/misc/cgi_redirect/Makefile.cgi_redirect.lib | 2 ++
- src/misc/grid_cgi/Makefile.xgridcgi.lib | 2 ++
- src/objects/access/Makefile.access.lib | 1 +
- src/objects/biblio/Makefile.biblio.lib | 2 ++
- src/objects/biotree/Makefile.biotree.lib | 2 ++
- src/objects/blast/Makefile.blast.lib | 2 ++
- src/objects/blast/Makefile.xnetblastcli.lib | 2 ++
- src/objects/blastdb/Makefile.blastdb.lib | 2 ++
- src/objects/blastxml/Makefile.blastxml.lib | 2 ++
- src/objects/cdd/Makefile.cdd.lib | 2 ++
- src/objects/cn3d/Makefile.cn3d.lib | 2 ++
- src/objects/docsum/Makefile.docsum.lib | 2 ++
- src/objects/entrez2/Makefile.entrez2.lib | 2 ++
- src/objects/entrez2/Makefile.entrez2cli.lib | 2 ++
- src/objects/entrezgene/Makefile.entrezgene.lib | 2 ++
- src/objects/featdef/Makefile.featdef.lib | 2 ++
- src/objects/gbseq/Makefile.gbseq.lib | 2 ++
- src/objects/general/Makefile.general.lib | 2 ++
- src/objects/genomecoll/Makefile.genome_collection.lib | 2 ++
- src/objects/homologene/Makefile.homologene.lib | 2 ++
- src/objects/id1/Makefile.id1.lib | 2 ++
- src/objects/id1/Makefile.id1cli.lib | 2 ++
- src/objects/id2/Makefile.id2.lib | 2 ++
- src/objects/id2/Makefile.id2cli.lib | 2 ++
- src/objects/insdseq/Makefile.insdseq.lib | 2 ++
- src/objects/macro/Makefile.macro.lib | 2 ++
- src/objects/medlars/Makefile.medlars.lib | 2 ++
- src/objects/medline/Makefile.medline.lib | 2 ++
- src/objects/mim/Makefile.mim.lib | 2 ++
- src/objects/mla/Makefile.mla.lib | 2 ++
- src/objects/mla/Makefile.mlacli.lib | 2 ++
- src/objects/mmdb/Makefile.mmdb.lib | 2 ++
- src/objects/ncbimime/Makefile.ncbimime.lib | 2 ++
- src/objects/objprt/Makefile.objprt.lib | 2 ++
- src/objects/omssa/Makefile.omssa.lib | 2 ++
- src/objects/pcassay/Makefile.pcassay.lib | 2 ++
- src/objects/pcsubstance/Makefile.pcsubstance.lib | 2 ++
- src/objects/proj/Makefile.proj.lib | 2 ++
- src/objects/pub/Makefile.pub.lib | 2 ++
- src/objects/pubmed/Makefile.pubmed.lib | 2 ++
- src/objects/remap/Makefile.remap.lib | 2 ++
- src/objects/remap/Makefile.remapcli.lib | 2 ++
- src/objects/scoremat/Makefile.scoremat.lib | 2 ++
- src/objects/seq/Makefile.seq.lib | 2 ++
- src/objects/seqcode/Makefile.seqcode.lib | 2 ++
- src/objects/seqedit/Makefile.seqedit.lib | 1 +
- src/objects/seqset/Makefile.seqset.lib | 1 +
- src/objects/seqsplit/Makefile.seqsplit.lib | 2 ++
- src/objects/seqtest/Makefile.seqtest.lib | 2 ++
- src/objects/submit/Makefile.submit.lib | 1 +
- src/objects/taxon1/Makefile.taxon1.lib | 2 ++
- src/objects/taxon3/Makefile.taxon3.lib | 2 ++
- src/objects/tinyseq/Makefile.tinyseq.lib | 2 ++
- src/objects/valerr/Makefile.valerr.lib | 2 ++
- src/objects/valid/Makefile.valid.lib | 2 ++
- src/objects/variation/Makefile.variation.lib | 1 +
- src/objmgr/split/Makefile.id2_split.lib | 2 +-
- src/objmgr/util/Makefile.util.lib | 1 +
- src/objtools/align/Makefile.xalntool.lib | 2 ++
- src/objtools/align_format/Makefile.align_format.lib | 2 ++
- src/objtools/alnmgr/Makefile.alnmgr.lib | 1 +
- src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib | 2 ++
- src/objtools/blast/gene_info_reader/Makefile.gene_info.lib | 2 ++
- src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib | 2 ++
- src/objtools/blast/seqdb_reader/Makefile.seqdb.lib | 2 ++
- src/objtools/blast/seqdb_writer/Makefile.writedb.lib | 2 ++
- src/objtools/blast/services/Makefile.blast_services.lib | 1 +
- src/objtools/cddalignview/Makefile.cddalignview.lib | 2 ++
- src/objtools/cleanup/Makefile.cleanup.lib | 2 +-
- src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib | 3 +++
- .../data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib | 2 ++
- src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib | 2 ++
- src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib | 2 +-
- src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib | 2 ++
- src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib | 2 ++
- src/objtools/data_loaders/trace/Makefile.xloader_trace.lib | 2 ++
- src/objtools/edit/Makefile.edit.lib | 2 ++
- src/objtools/eutils/api/Makefile.eutils.lib | 2 ++
- src/objtools/eutils/egquery/Makefile.egquery.lib | 2 ++
- src/objtools/eutils/ehistory/Makefile.ehistory.lib | 2 ++
- src/objtools/eutils/einfo/Makefile.einfo.lib | 2 ++
- src/objtools/eutils/elink/Makefile.elink.lib | 2 ++
- src/objtools/eutils/epost/Makefile.epost.lib | 2 ++
- src/objtools/eutils/esearch/Makefile.esearch.lib | 2 ++
- src/objtools/eutils/espell/Makefile.espell.lib | 2 ++
- src/objtools/eutils/esummary/Makefile.esummary.lib | 2 ++
- src/objtools/eutils/linkout/Makefile.linkout.lib | 2 ++
- src/objtools/eutils/uilist/Makefile.uilist.lib | 2 ++
- src/objtools/format/Makefile.xformat.lib | 2 ++
- src/objtools/lds/Makefile.lds.lib | 2 +-
- src/objtools/manip/Makefile.xobjmanip.lib | 2 ++
- src/objtools/readers/Makefile.xobjread.lib | 3 +--
- src/objtools/readers/Makefile.xobjreadex.lib | 2 +-
- src/objtools/seqmasks_io/Makefile.seqmasks_io.lib | 2 +-
- src/objtools/simple/Makefile.xobjsimple.lib | 1 +
- src/objtools/snputil/Makefile.snputil.lib | 2 ++
- src/objtools/validator/Makefile.validator.lib | 2 ++
- src/objtools/writers/Makefile.xobjwrite.lib | 1 +
- src/sample/app/asn/Makefile.sample_asn.lib | 2 ++
- src/sample/app/soap/Makefile.soap_dataobj.lib | 2 ++
- src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib | 2 ++
- src/sample/lib/basic/Makefile.basic_sample_lib.lib | 2 ++
- src/sample/lib/dtd/Makefile.dtd_sample_lib.lib | 2 ++
- src/sample/lib/xsd/Makefile.xsd_sample_lib.lib | 2 ++
- src/serial/Makefile.serial.lib | 2 ++
- src/serial/soap/Makefile.soap.lib | 2 ++
- src/serial/soap/Makefile.soap_server.lib | 2 ++
- src/serial/test/Makefile.we_cpp.lib | 1 +
- src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib | 2 +-
- src/sra/sdk/libs/align/Makefile.align-writer.lib | 2 +-
- src/util/Makefile.util.lib | 2 ++
- src/util/compress/api/Makefile.compress.lib | 2 +-
- src/util/qparse/Makefile.xqueryparse.lib | 2 ++
- src/util/regexp/Makefile.regexp.lib | 2 ++
- src/util/sequtil/Makefile.sequtil.lib | 2 ++
- src/util/xregexp/Makefile.xregexp.lib | 2 +-
- 167 files changed, 307 insertions(+), 23 deletions(-)
-
-diff --git a/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib b/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
-index c8851d8..35ae629 100644
---- a/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
-+++ b/src/algo/align/contig_assembly/Makefile.xalgocontig_assembly.lib
-@@ -10,3 +10,5 @@ LIB = xalgocontig_assembly
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = align_format blastinput dbapi_driver seq xalgoalignnw xalgodustmask xalnmgr xblast xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/align/ngalign/Makefile.xngalign.lib b/src/algo/align/ngalign/Makefile.xngalign.lib
-index d163f7c..ade88ce 100644
---- a/src/algo/align/ngalign/Makefile.xngalign.lib
-+++ b/src/algo/align/ngalign/Makefile.xngalign.lib
-@@ -15,3 +15,5 @@ LIB = xngalign
-
- CXXFLAGS = $(FAST_CXXFLAGS) -I./.
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = seq xalgoalignutil xncbi blastinput xalgoalignnw align_format xcgi ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2
-diff --git a/src/algo/align/nw/Makefile.xalgoalignnw.lib b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-index acc1ddf..acba81c 100644
---- a/src/algo/align/nw/Makefile.xalgoalignnw.lib
-+++ b/src/algo/align/nw/Makefile.xalgoalignnw.lib
-@@ -15,3 +15,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = kiryutin
-+
-+DLL_LIB = access align_format dbapi_driver general seq writedb xncbi xser # axf
-diff --git a/src/algo/align/prosplign/Makefile.prosplign.lib b/src/algo/align/prosplign/Makefile.prosplign.lib
-index 248ee37..73143ad 100644
---- a/src/algo/align/prosplign/Makefile.prosplign.lib
-+++ b/src/algo/align/prosplign/Makefile.prosplign.lib
-@@ -10,3 +10,5 @@ LIB = prosplign
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = align_format blastinput dbapi_driver general igblast seq xalgoalignutil xalnmgr xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/align/splign/Makefile.xalgoalignsplign.lib b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
-index d67680b..3d56789 100644
---- a/src/algo/align/splign/Makefile.xalgoalignsplign.lib
-+++ b/src/algo/align/splign/Makefile.xalgoalignsplign.lib
-@@ -10,3 +10,5 @@ LIB = xalgoalignsplign
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = access align_format blastinput dbapi_driver gene_info general seq seqdb xalgoalignnw xalgoalignutil xalgoseq xblast xncbi xobjmgr xobjutil xser xutil # axf prosplign
-diff --git a/src/algo/blast/api/Makefile.xblast.lib b/src/algo/blast/api/Makefile.xblast.lib
-index 073973b..c6a4c2c 100644
---- a/src/algo/blast/api/Makefile.xblast.lib
-+++ b/src/algo/blast/api/Makefile.xblast.lib
-@@ -78,7 +78,7 @@ SRC = $(SRC_C:%=.core_%) $(SRC_CXX)
-
- LIB = xblast
-
--DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS)
-+DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS) seqdb xnetblast xnetblastcli xalgoblastdbindex xalgowinmask tables composition_adjustment xobjread
-
- CFLAGS = $(FAST_CFLAGS)
- # Strict gcc flags
-diff --git a/src/algo/blast/blastinput/Makefile.blastinput.lib b/src/algo/blast/blastinput/Makefile.blastinput.lib
-index bfb315c..2cd809a 100644
---- a/src/algo/blast/blastinput/Makefile.blastinput.lib
-+++ b/src/algo/blast/blastinput/Makefile.blastinput.lib
-@@ -24,7 +24,7 @@ SRC = $(SRC_CXX)
-
- LIB = blastinput
-
--DLL_LIB = xblast $(OBJMGR_LIBS)
-+DLL_LIB = seqdb ncbi_xloader_blastdb ncbi_xloader_blastdb_rmt align_format xalnmgr xblast xcgi xobjread xobjutil ncbi_xloader_genbank ncbi_xreader ncbi_xreader_id2 xalnmgr xcgi
-
- # should be redundant, given the above :-/
- ASN_DEP = seqset xnetblast
-diff --git a/src/algo/blast/core/Makefile.blast.lib b/src/algo/blast/core/Makefile.blast.lib
-index 8e889a7..1326aee 100644
---- a/src/algo/blast/core/Makefile.blast.lib
-+++ b/src/algo/blast/core/Makefile.blast.lib
-@@ -23,3 +23,5 @@ LDFLAGS = $(FAST_LDFLAGS)
-
-
- WATCHERS = coulouri maning madden camacho
-+
-+DLL_LIB = xutil
-diff --git a/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib b/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
-index fcfb9f9..0e762b4 100644
---- a/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
-+++ b/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib
-@@ -14,3 +14,5 @@ LDFLAGS = $(FAST_LDFLAGS)
- ASN_DEP = seqset
-
- WATCHERS = morgulis
-+
-+DLL_LIB = dbapi_driver seq seqdb seqset xncbi xobjmgr xobjread xobjutil xser xutil # axf
-diff --git a/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib b/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
-index e64f111..475f4a1 100644
---- a/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
-+++ b/src/algo/blast/dbindex_search/Makefile.xalgoblastdbindex_search.lib
-@@ -10,3 +10,5 @@ LDFLAGS = $(FAST_LDFLAGS)
- ASN_DEP = seqset
-
- WATCHERS = morgulis
-+
-+DLL_LIB = dbapi_driver xncbi xobjmgr # axf
-diff --git a/src/algo/blast/format/Makefile.xblastformat.lib b/src/algo/blast/format/Makefile.xblastformat.lib
-index f7da067..9920332 100644
---- a/src/algo/blast/format/Makefile.xblastformat.lib
-+++ b/src/algo/blast/format/Makefile.xblastformat.lib
-@@ -7,6 +7,6 @@ SRC = blastfmtutil blastxml_format blast_format data4xmlformat build_archive vec
-
- CPPFLAGS = $(ORIG_CPPFLAGS)
-
--DLL_LIB = blastxml xhtml xcgi
-+DLL_LIB = blastxml xhtml xcgi align_format general scoremat seq seqdb xalnmgr xblast xnetblast xobjmgr xobjutil blast_services ncbi_xloader_genbank xcgi # cobalt
-
- WATCHERS = jianye zaretska madden camacho fongah2
-diff --git a/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib b/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
-index 316d4fa..844de85 100644
---- a/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
-+++ b/src/algo/blast/gumbel_params/Makefile.gumbelparams.lib
-@@ -11,3 +11,4 @@ LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = boratyng madden camacho
-
-+DLL_LIB = dbapi_driver xncbi xutil # axf
-diff --git a/src/algo/cobalt/Makefile.cobalt.lib b/src/algo/cobalt/Makefile.cobalt.lib
-index e618f67..b406cc5 100644
---- a/src/algo/cobalt/Makefile.cobalt.lib
-+++ b/src/algo/cobalt/Makefile.cobalt.lib
-@@ -14,3 +14,5 @@ ASN_DEP = seq seqset biotree xnetblast blastdb
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = align_format dbapi_driver general igblast seq seqdb seqset xalgoalignnw xalgophytree xblast xncbi xnetblast xobjmgr xobjutil xser fastme # axf
-diff --git a/src/algo/dustmask/Makefile.xalgodustmask.lib b/src/algo/dustmask/Makefile.xalgodustmask.lib
-index 84e2568..3632356 100644
---- a/src/algo/dustmask/Makefile.xalgodustmask.lib
-+++ b/src/algo/dustmask/Makefile.xalgodustmask.lib
-@@ -11,3 +11,4 @@ SRC = symdust
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = dbapi_driver seq xncbi xobjmgr # axf
-diff --git a/src/algo/gnomon/Makefile.gnomon.lib b/src/algo/gnomon/Makefile.gnomon.lib
-index af363c0..3235647 100644
---- a/src/algo/gnomon/Makefile.gnomon.lib
-+++ b/src/algo/gnomon/Makefile.gnomon.lib
-@@ -6,7 +6,7 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) \
- gnomon_engine gnomon_objmgr score gnomon_model parse hmm gnomon_seq asn1 chainer id_handler \
- annot select_alignments_alt
- LIB = xalgognomon
--DLL_LIB = xobjutil $(SOBJMGR_LIBS)
-+DLL_LIB = xobjutil $(SOBJMGR_LIBS) xalgoseq
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-diff --git a/src/algo/ms/formats/pepxml/Makefile.pepXML.lib b/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
-index 686dd70..98f57b2 100644
---- a/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
-+++ b/src/algo/ms/formats/pepxml/Makefile.pepXML.lib
-@@ -2,3 +2,5 @@ WATCHERS = lewisg slottad
-
- LIB = pepXML
- SRC = pepXML__ pepXML___
-+
-+DLL_LIB = access align_format dbapi_driver xncbi xser # axf
-diff --git a/src/algo/ms/omssa/Makefile.xomssa.lib b/src/algo/ms/omssa/Makefile.xomssa.lib
-index 872b92e..78261eb 100644
---- a/src/algo/ms/omssa/Makefile.xomssa.lib
-+++ b/src/algo/ms/omssa/Makefile.xomssa.lib
-@@ -19,3 +19,5 @@ LIB = xomssa
- CFLAGS = $(FAST_CFLAGS)
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-+
-+DLL_LIB = xutil omssa pepXML xcompress xconnect seqdb xblast xregexp
-diff --git a/src/algo/phy_tree/Makefile.xalgophytree.lib b/src/algo/phy_tree/Makefile.xalgophytree.lib
-index 5964ef4..8163366 100644
---- a/src/algo/phy_tree/Makefile.xalgophytree.lib
-+++ b/src/algo/phy_tree/Makefile.xalgophytree.lib
-@@ -6,7 +6,7 @@ ASN_DEP = biotree
-
- SRC = bio_tree phy_node dist_methods lex.newick newick.tab tree_to_dist_mat phytree_calc
- LIB = xalgophytree
--DLL_LIB = biotree
-+DLL_LIB = biotree seq xalnmgr xobjutil # fastme
-
- # The -I flag is necessary because filenames in #line directives throw
- # off some compilers (GCC 2.95 at least). :-/
-diff --git a/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib b/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
-index 15d7440..fab9207 100644
---- a/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
-+++ b/src/algo/phy_tree/phytree_format/Makefile.phytreeformat.lib
-@@ -10,3 +10,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
- ASN_DEP = biotree seqset taxon1
-
- WATCHERS = boratyng
-+
-+DLL_LIB = access align_format biotree dbapi_driver fastme gene_info seq taxon1 xalgophytree xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/segmask/Makefile.xalgosegmask.lib b/src/algo/segmask/Makefile.xalgosegmask.lib
-index bd011c1..97281ec 100644
---- a/src/algo/segmask/Makefile.xalgosegmask.lib
-+++ b/src/algo/segmask/Makefile.xalgosegmask.lib
-@@ -11,3 +11,4 @@ SRC = segmask
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = align_format xobjmgr
-diff --git a/src/algo/seqqa/Makefile.xalgoseqqa.lib b/src/algo/seqqa/Makefile.xalgoseqqa.lib
-index b1bea47..a0e5b1b 100644
---- a/src/algo/seqqa/Makefile.xalgoseqqa.lib
-+++ b/src/algo/seqqa/Makefile.xalgoseqqa.lib
-@@ -12,3 +12,5 @@ LIB = xalgoseqqa
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
-+
-+DLL_LIB = access align_format dbapi_driver entrez2cli gene_info general seq seqtest xalgognomon xalgoseq xalnmgr xncbi xobjmgr xobjutil xser # axf
-diff --git a/src/algo/sequence/Makefile.xalgoseq.lib b/src/algo/sequence/Makefile.xalgoseq.lib
-index 51f4cd7..724e939 100644
---- a/src/algo/sequence/Makefile.xalgoseq.lib
-+++ b/src/algo/sequence/Makefile.xalgoseq.lib
-@@ -13,3 +13,5 @@ LDFLAGS = $(FAST_LDFLAGS)
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
-
- WATCHERS = dicuccio
-+
-+DLL_LIB = taxon1 xalnmgr xregexp align_format seqset xobjmgr xobjutil
-diff --git a/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib b/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
-index 5562f82..68d3a87 100644
---- a/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
-+++ b/src/algo/structure/bma_refine/Makefile.xbma_refiner.lib
-@@ -24,3 +24,6 @@ SRC = RowSelector \
- RefinerTrial \
- RefinerEngine \
- Interface
-+
-+DLL_LIB = blastinput cdd ncbi_xcache_bdb xcd_utils xncbi xser xutil
-+
-diff --git a/src/algo/structure/cd_utils/Makefile.xcd_utils.lib b/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
-index eda71f8..8d3a96a 100644
---- a/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
-+++ b/src/algo/structure/cd_utils/Makefile.xcd_utils.lib
-@@ -68,6 +68,6 @@ SRC = \
- cuTaxTree \
- cuUtils
-
--DLL_LIB = xobjread
-+DLL_LIB = xobjread blastdb blast_services cdd entrez2cli id1cli mmdb ncbimime scoremat taxon1 xblast xobjmgr xregexp
-
- CPPFLAGS = $(ORIG_CPPFLAGS)
-diff --git a/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib b/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
-index 676a8dd..3d3e4c9 100644
---- a/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
-+++ b/src/algo/structure/struct_dp/Makefile.xstruct_dp.lib
-@@ -9,3 +9,5 @@ WATCHERS = thiessen
- SRC = block_align
-
- LIB = xstruct_dp
-+
-+DLL_LIB = xncbi
-diff --git a/src/algo/structure/struct_util/Makefile.xstruct_util.lib b/src/algo/structure/struct_util/Makefile.xstruct_util.lib
-index 5a38c7d..35d7077 100644
---- a/src/algo/structure/struct_util/Makefile.xstruct_util.lib
-+++ b/src/algo/structure/struct_util/Makefile.xstruct_util.lib
-@@ -17,3 +17,5 @@ SRC = aaa_dummy_pch \
- su_block_multiple_alignment \
- su_pssm \
- su_sequence_set
-+
-+DLL_LIB = seqset seq xncbi scoremat xstruct_dp xblast
-diff --git a/src/algo/structure/threader/Makefile.xstruct_thread.lib b/src/algo/structure/threader/Makefile.xstruct_thread.lib
-index c06a2c0..9f1ff25 100644
---- a/src/algo/structure/threader/Makefile.xstruct_thread.lib
-+++ b/src/algo/structure/threader/Makefile.xstruct_thread.lib
-@@ -10,3 +10,5 @@ SRC = thrdalgs thrdatd thrdbwfi thrdcpal thrdcpll thrdcprl \
- thrdttbi thrdzsc
-
- LIB = xstruct_thread
-+
-+DLL_LIB = xutil
-diff --git a/src/algo/text/Makefile.xalgotext.lib b/src/algo/text/Makefile.xalgotext.lib
-index 81ba0e6..f25073e 100644
---- a/src/algo/text/Makefile.xalgotext.lib
-+++ b/src/algo/text/Makefile.xalgotext.lib
-@@ -10,3 +10,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
- ASN_DEP = general
-+
-+DLL_LIB = align_format blastinput ncbi_xcache_bdb xcompress xncbi xutil # axf
-diff --git a/src/algo/volume_merge/Makefile.xalgovmerge.lib b/src/algo/volume_merge/Makefile.xalgovmerge.lib
-index 499861a..3ffb80b 100644
---- a/src/algo/volume_merge/Makefile.xalgovmerge.lib
-+++ b/src/algo/volume_merge/Makefile.xalgovmerge.lib
-@@ -10,3 +10,5 @@ SRC = volume_merge
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+
-+DLL_LIB = xncbi
-diff --git a/src/algo/winmask/Makefile.xalgowinmask.lib b/src/algo/winmask/Makefile.xalgowinmask.lib
-index afaf676..ad2c1fe 100644
---- a/src/algo/winmask/Makefile.xalgowinmask.lib
-+++ b/src/algo/winmask/Makefile.xalgowinmask.lib
-@@ -21,3 +21,5 @@ SRC = seq_masker seq_masker_score_mean seq_masker_score_mean_glob \
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = seqmasks_io xobjread xobjutil
-+
-diff --git a/src/cgi/Makefile.cgi.lib b/src/cgi/Makefile.cgi.lib
-index a990390..edf40aa 100644
---- a/src/cgi/Makefile.cgi.lib
-+++ b/src/cgi/Makefile.cgi.lib
-@@ -11,3 +11,5 @@ LIB = xcgi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/cgi/Makefile.fcgi.lib b/src/cgi/Makefile.fcgi.lib
-index 2569b41..6b85780 100644
---- a/src/cgi/Makefile.fcgi.lib
-+++ b/src/cgi/Makefile.fcgi.lib
-@@ -12,3 +12,5 @@ LIB = xfcgi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE) -DNCBI_XFCGI_EXPORTS
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/connect/Makefile.connssl.lib b/src/connect/Makefile.connssl.lib
-index b400ca2..8756320 100644
---- a/src/connect/Makefile.connssl.lib
-+++ b/src/connect/Makefile.connssl.lib
-@@ -8,3 +8,5 @@ CPPFLAGS = $(GNUTLS_INCLUDE) $(ORIG_CPPFLAGS)
- LIBS = $(GNUTLS_LIBS) $(ORIG_LIBS)
-
- WATCHERS = lavr
-+
-+DLL_LIB = connect
-diff --git a/src/connect/Makefile.xconnect.lib b/src/connect/Makefile.xconnect.lib
-index 473bb0b..88dae10 100644
---- a/src/connect/Makefile.xconnect.lib
-+++ b/src/connect/Makefile.xconnect.lib
-@@ -11,9 +11,13 @@ include $(srcdir)/Makefile.xxconnect.lib
- SRC = $(SRC_C) $(SRC_CXX)
- UNIX_SRC = $(LOCAL_LBSM)
-
-+DLL_LIB = xncbi
-+
- LIB = xconnect
- PROJ_TAG = core
-
- LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/connect/Makefile.xthrserv.lib b/src/connect/Makefile.xthrserv.lib
-index 1e5b857..0833a78 100644
---- a/src/connect/Makefile.xthrserv.lib
-+++ b/src/connect/Makefile.xthrserv.lib
-@@ -4,6 +4,6 @@ SRC = threaded_server server server_monitor connection_pool
- LIB = xthrserv
- PROJ_TAG = core
- LIBS = $(NETWORK_LIBS)
--DLL_LIB = xutil xconnect
-+DLL_LIB = xncbi xutil xconnect
-
- WATCHERS = ivanovp
-diff --git a/src/connect/Makefile.xxconnect.lib b/src/connect/Makefile.xxconnect.lib
-index d7ba751..8e27819 100644
---- a/src/connect/Makefile.xxconnect.lib
-+++ b/src/connect/Makefile.xxconnect.lib
-@@ -16,3 +16,5 @@ PROJ_TAG = core
- LIBS = $(NETWORK_LIBS) $(ORIG_LIBS)
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi xutil connect
-diff --git a/src/connect/services/Makefile.ncbi_xcache_netcache.lib b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-index 606f4f1..e6cfdac 100644
---- a/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-+++ b/src/connect/services/Makefile.ncbi_xcache_netcache.lib
-@@ -6,7 +6,7 @@ SRC = neticache_client
- LIB = ncbi_xcache_netcache
-
- LIB_OR_DLL = both
--DLL_LIB = xconnserv xconnect xutil
-+DLL_LIB = xconnserv xconnect xutil xncbi
-
- CPPFLAGS = $(ORIG_CPPFLAGS)
- LIBS = $(ORIG_LIBS)
-diff --git a/src/connect/services/Makefile.xconnserv.lib b/src/connect/services/Makefile.xconnserv.lib
-index 4b8f21f..04fcbf8 100644
---- a/src/connect/services/Makefile.xconnserv.lib
-+++ b/src/connect/services/Makefile.xconnserv.lib
-@@ -15,6 +15,6 @@ LIB = xconnserv
- PROJ_TAG = core
- LIBS = $(NETWORK_LIBS)
-
--DLL_LIB = xthrserv xconnect xutil
-+DLL_LIB = xthrserv xconnect xutil xncbi
-
- WATCHERS = kazimird
-diff --git a/src/connect/test/Makefile.conntest.lib b/src/connect/test/Makefile.conntest.lib
-index 58a2fa5..3d9876c 100644
---- a/src/connect/test/Makefile.conntest.lib
-+++ b/src/connect/test/Makefile.conntest.lib
-@@ -4,3 +4,5 @@ SRC = ncbi_conntest
- LIB = xconntest
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi xutil connect
-diff --git a/src/corelib/Makefile.test_boost.lib b/src/corelib/Makefile.test_boost.lib
-index e8fa174..f90441d 100644
---- a/src/corelib/Makefile.test_boost.lib
-+++ b/src/corelib/Makefile.test_boost.lib
-@@ -9,3 +9,5 @@ REQUIRES = Boost.Test.Included
-
- WATCHERS = ivanovp
- PROJ_TAG = test
-+
-+DLL_LIB = xncbi
-diff --git a/src/corelib/Makefile.test_mt.lib b/src/corelib/Makefile.test_mt.lib
-index 6153eab..f64c3a2 100644
---- a/src/corelib/Makefile.test_mt.lib
-+++ b/src/corelib/Makefile.test_mt.lib
-@@ -8,3 +8,5 @@ LIB = test_mt
- USE_PCH = no
- WATCHERS = grichenk
- PROJ_TAG = test
-+
-+DLL_LIB = xncbi
-diff --git a/src/corelib/test/Makefile.pbacktest.lib b/src/corelib/test/Makefile.pbacktest.lib
-index da0c616..c4c62ab 100644
---- a/src/corelib/test/Makefile.pbacktest.lib
-+++ b/src/corelib/test/Makefile.pbacktest.lib
-@@ -4,3 +4,5 @@ SRC = pbacktest
- LIB = xpbacktest
-
- WATCHERS = lavr
-+
-+DLL_LIB = xncbi
-diff --git a/src/db/bdb/Makefile.bdb.lib b/src/db/bdb/Makefile.bdb.lib
-index 3729707..cd2827c 100644
---- a/src/db/bdb/Makefile.bdb.lib
-+++ b/src/db/bdb/Makefile.bdb.lib
-@@ -14,3 +14,7 @@ LIB = bdb
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
-
- WATCHERS = kuznets
-+
-+DLL_LIB = xncbi xutil
-+LIBS = $(BERKELEYDB_LIBS)
-+
-diff --git a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-index 7e97a26..8f54efc 100644
---- a/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-+++ b/src/db/bdb/Makefile.ncbi_xcache_bdb.lib
-@@ -8,7 +8,7 @@ SRC = bdb_blobcache
- LIB = ncbi_xcache_bdb
-
- LIB_OR_DLL = both
--DLL_LIB = bdb xutil
-+DLL_LIB = bdb xutil xncbi
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BERKELEYDB_INCLUDE)
- LIBS = $(BERKELEYDB_LIBS) $(ORIG_LIBS)
-diff --git a/src/db/sqlite/Makefile.sqlitewrapp.lib b/src/db/sqlite/Makefile.sqlitewrapp.lib
-index cecfd16..c01668b 100644
---- a/src/db/sqlite/Makefile.sqlitewrapp.lib
-+++ b/src/db/sqlite/Makefile.sqlitewrapp.lib
-@@ -8,3 +8,6 @@ CPPFLAGS= $(ORIG_CPPFLAGS) $(SQLITE3_INCLUDE)
- REQUIRES = SQLITE3
-
- WATCHERS = ivanovp
-+
-+DLL_LIB = xncbi xutil
-+LIBS = $(SQLITE3_LIBS)
-diff --git a/src/dbapi/Makefile.dbapi.lib b/src/dbapi/Makefile.dbapi.lib
-index 6e3ad4c..e3d6a49 100644
---- a/src/dbapi/Makefile.dbapi.lib
-+++ b/src/dbapi/Makefile.dbapi.lib
-@@ -10,3 +10,8 @@ LIB = dbapi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
-
- WATCHERS = ivanovp
-+
-+#ASN_DEP = driver dbapi_driver
-+
-+DLL_LIB = xncbi xutil # dbapi_driver$(DLL)
-+LIBS = $(PYTHON_LIBS)
-diff --git a/src/dbapi/driver/Makefile.dbapi_driver.lib b/src/dbapi/driver/Makefile.dbapi_driver.lib
-index dfeac5a..bc113ed 100644
---- a/src/dbapi/driver/Makefile.dbapi_driver.lib
-+++ b/src/dbapi/driver/Makefile.dbapi_driver.lib
-@@ -22,3 +22,5 @@ CXXFLAGS_darwin = -fno-inline
- CXXFLAGS = $(ORIG_CXXFLAGS) $(CXXFLAGS_$(OSTYPE))
-
- WATCHERS = ivanovp
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-index 941ccd6..f1f872c 100644
---- a/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-+++ b/src/dbapi/driver/samples/Makefile.dbapi_sample_base.lib
-@@ -6,3 +6,5 @@ LIB = dbapi_sample_base
- CPPFLAGS = $(ORIG_CPPFLAGS) $(SYBASE_INCLUDE)
-
- WATCHERS = ivanovp
-+
-+DLL_LIB = xncbi xutil dbapi_driver
-diff --git a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-index ebe08c4..86ecda6 100644
---- a/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-+++ b/src/dbapi/lang_bind/python/Makefile.python_ncbi_dbapi.lib
-@@ -11,7 +11,7 @@ LIB_OR_DLL = dll
-
- # Dependencies for shared library
- DLL_LIB = dbapi dbapi_driver$(DLL) $(XCONNEXT) xconnect xutil xncbi
--LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS)
-+LIBS = $(RUNPATH_ORIGIN)/python_ncbi_dbapi/$(NCBI_PACKAGE_VERSION) $(ORIG_LIBS) $(PYTHON_LIBS)
- # Drop other flags to build with full dependencies under ICC.
- DLL_LDFLAGS = $(DLL_UNDEF_FLAGS)
-
-diff --git a/src/dbapi/simple/Makefile.sdbapi.lib b/src/dbapi/simple/Makefile.sdbapi.lib
-index 603fd1e..0d06323 100644
---- a/src/dbapi/simple/Makefile.sdbapi.lib
-+++ b/src/dbapi/simple/Makefile.sdbapi.lib
-@@ -5,3 +5,4 @@ LIB = sdbapi
-
- WATCHERS = ivanovp
-
-+DLL_LIB = xncbi xutil dbapi_driver ncbi_xdbapi_ftds xconnect xser bdb xconnserv
-diff --git a/src/html/Makefile.html.lib b/src/html/Makefile.html.lib
-index a57c1e3..0005299 100644
---- a/src/html/Makefile.html.lib
-+++ b/src/html/Makefile.html.lib
-@@ -8,3 +8,5 @@ SRC = node html htmlhelper page pager selection components \
- LIB = xhtml
-
- WATCHERS = ivanov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/misc/cgi_redirect/Makefile.cgi_redirect.lib b/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
-index 6d7a4af..332e5d0 100644
---- a/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
-+++ b/src/misc/cgi_redirect/Makefile.cgi_redirect.lib
-@@ -7,3 +7,5 @@ SRC = redirect
- LIB = xcgi_redirect
-
- WATCHERS = ivanov
-+
-+DLL_LIB = axf dbapi_driver xcgi xhtml xncbi
-diff --git a/src/misc/grid_cgi/Makefile.xgridcgi.lib b/src/misc/grid_cgi/Makefile.xgridcgi.lib
-index c9ef138..8e25cbe 100644
---- a/src/misc/grid_cgi/Makefile.xgridcgi.lib
-+++ b/src/misc/grid_cgi/Makefile.xgridcgi.lib
-@@ -9,3 +9,5 @@ LIB = xgridcgi
- CPPFLAGS = $(ORIG_CPPFLAGS) $(FASTCGI_INCLUDE)
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi xcgi xconnserv xhtml
-diff --git a/src/objects/access/Makefile.access.lib b/src/objects/access/Makefile.access.lib
-index 11421d9..e7900a1 100644
---- a/src/objects/access/Makefile.access.lib
-+++ b/src/objects/access/Makefile.access.lib
-@@ -1,2 +1,3 @@
- LIB = access
- SRC = access__ access___
-+DLL_LIB = xncbi xser
-diff --git a/src/objects/biblio/Makefile.biblio.lib b/src/objects/biblio/Makefile.biblio.lib
-index 2c7d491..cb54ba6 100644
---- a/src/objects/biblio/Makefile.biblio.lib
-+++ b/src/objects/biblio/Makefile.biblio.lib
-@@ -1,2 +1,4 @@
- LIB = biblio
- SRC = biblio__ biblio___ citation_base
-+
-+DLL_LIB = general xser xncbi xutil
-diff --git a/src/objects/biotree/Makefile.biotree.lib b/src/objects/biotree/Makefile.biotree.lib
-index 8019285..2c689ae 100644
---- a/src/objects/biotree/Makefile.biotree.lib
-+++ b/src/objects/biotree/Makefile.biotree.lib
-@@ -1,3 +1,5 @@
- ASN_DEP = seq seqset
- LIB = biotree
- SRC = biotree__ biotree___
-+
-+DLL_LIB = xncbi xser
-diff --git a/src/objects/blast/Makefile.blast.lib b/src/objects/blast/Makefile.blast.lib
-index 0dd0fa3..d50f29f 100644
---- a/src/objects/blast/Makefile.blast.lib
-+++ b/src/objects/blast/Makefile.blast.lib
-@@ -2,3 +2,5 @@ LIB = xnetblast
- SRC = blast__ blast___ names
-
- WATCHERS = camacho
-+
-+DLL_LIB = xncbi xutil xser seq seqset scoremat
-diff --git a/src/objects/blast/Makefile.xnetblastcli.lib b/src/objects/blast/Makefile.xnetblastcli.lib
-index 96325c4..5a72805 100644
---- a/src/objects/blast/Makefile.xnetblastcli.lib
-+++ b/src/objects/blast/Makefile.xnetblastcli.lib
-@@ -2,3 +2,5 @@ ASN_DEP = xnetblast
-
- LIB = xnetblastcli
- SRC = blastclient blastclient_
-+
-+DLL_LIB = xncbi xutil seqset xconnect xnetblast
-diff --git a/src/objects/blastdb/Makefile.blastdb.lib b/src/objects/blastdb/Makefile.blastdb.lib
-index be2c0d1..2884db2 100644
---- a/src/objects/blastdb/Makefile.blastdb.lib
-+++ b/src/objects/blastdb/Makefile.blastdb.lib
-@@ -1,2 +1,4 @@
- LIB = blastdb
- SRC = blastdb__ blastdb___
-+
-+DLL_LIB = xncbi xser seq
-diff --git a/src/objects/blastxml/Makefile.blastxml.lib b/src/objects/blastxml/Makefile.blastxml.lib
-index d18eb78..f90501d 100644
---- a/src/objects/blastxml/Makefile.blastxml.lib
-+++ b/src/objects/blastxml/Makefile.blastxml.lib
-@@ -1,2 +1,4 @@
- LIB = blastxml
- SRC = blastxml__ blastxml___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/cdd/Makefile.cdd.lib b/src/objects/cdd/Makefile.cdd.lib
-index 978cae9..24b726c 100644
---- a/src/objects/cdd/Makefile.cdd.lib
-+++ b/src/objects/cdd/Makefile.cdd.lib
-@@ -1,2 +1,4 @@
- LIB = cdd
- SRC = cdd__ cdd___
-+
-+DLL_LIB = mmdb xser scoremat cn3d
-diff --git a/src/objects/cn3d/Makefile.cn3d.lib b/src/objects/cn3d/Makefile.cn3d.lib
-index 1af5d1d..ecd31b2 100644
---- a/src/objects/cn3d/Makefile.cn3d.lib
-+++ b/src/objects/cn3d/Makefile.cn3d.lib
-@@ -1,3 +1,5 @@
- ASN_DEP = mmdb
- LIB = cn3d
- SRC = cn3d__ cn3d___
-+
-+DLL_LIB = mmdb xser
-diff --git a/src/objects/docsum/Makefile.docsum.lib b/src/objects/docsum/Makefile.docsum.lib
-index 0e68886..0bc8a1c 100644
---- a/src/objects/docsum/Makefile.docsum.lib
-+++ b/src/objects/docsum/Makefile.docsum.lib
-@@ -1,2 +1,4 @@
- LIB = docsum
- SRC = docsum__ docsum___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/entrez2/Makefile.entrez2.lib b/src/objects/entrez2/Makefile.entrez2.lib
-index 4507f72..4c47ad3 100644
---- a/src/objects/entrez2/Makefile.entrez2.lib
-+++ b/src/objects/entrez2/Makefile.entrez2.lib
-@@ -2,3 +2,5 @@ WATCHERS = lavr
-
- LIB = entrez2
- SRC = entrez2__ entrez2___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/entrez2/Makefile.entrez2cli.lib b/src/objects/entrez2/Makefile.entrez2cli.lib
-index 42a4649..2fdcc6f 100644
---- a/src/objects/entrez2/Makefile.entrez2cli.lib
-+++ b/src/objects/entrez2/Makefile.entrez2cli.lib
-@@ -4,3 +4,5 @@ ASN_DEP = entrez2
-
- LIB = entrez2cli
- SRC = entrez2_client entrez2_client_
-+
-+DLL_LIB = xncbi xconnect entrez2
-diff --git a/src/objects/entrezgene/Makefile.entrezgene.lib b/src/objects/entrezgene/Makefile.entrezgene.lib
-index a1bd4f4..27319c3 100644
---- a/src/objects/entrezgene/Makefile.entrezgene.lib
-+++ b/src/objects/entrezgene/Makefile.entrezgene.lib
-@@ -1,2 +1,4 @@
- LIB = entrezgene
- SRC = entrezgene__ entrezgene___
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/featdef/Makefile.featdef.lib b/src/objects/featdef/Makefile.featdef.lib
-index 51c7c8d..e603711 100644
---- a/src/objects/featdef/Makefile.featdef.lib
-+++ b/src/objects/featdef/Makefile.featdef.lib
-@@ -1,2 +1,4 @@
- LIB = featdef
- SRC = featdef__ featdef___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/gbseq/Makefile.gbseq.lib b/src/objects/gbseq/Makefile.gbseq.lib
-index 9dabdeb..4b27881 100644
---- a/src/objects/gbseq/Makefile.gbseq.lib
-+++ b/src/objects/gbseq/Makefile.gbseq.lib
-@@ -1,2 +1,4 @@
- LIB = gbseq
- SRC = gbseq__ gbseq___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/general/Makefile.general.lib b/src/objects/general/Makefile.general.lib
-index 951304f..3be083d 100644
---- a/src/objects/general/Makefile.general.lib
-+++ b/src/objects/general/Makefile.general.lib
-@@ -1,2 +1,4 @@
- LIB = general
- SRC = general__ general___ uoconv
-+
-+DLL_LIB = xser xncbi xutil
-diff --git a/src/objects/genomecoll/Makefile.genome_collection.lib b/src/objects/genomecoll/Makefile.genome_collection.lib
-index f039af6..f6b41a7 100644
---- a/src/objects/genomecoll/Makefile.genome_collection.lib
-+++ b/src/objects/genomecoll/Makefile.genome_collection.lib
-@@ -4,3 +4,5 @@ LIB = genome_collection
- SRC = genome_collection__ genome_collection___
-
- WATCHERS = dicuccio
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/homologene/Makefile.homologene.lib b/src/objects/homologene/Makefile.homologene.lib
-index 15d13ad..d44b2e3 100644
---- a/src/objects/homologene/Makefile.homologene.lib
-+++ b/src/objects/homologene/Makefile.homologene.lib
-@@ -4,3 +4,5 @@
-
- LIB = homologene
- SRC = homologene__ homologene___
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/id1/Makefile.id1.lib b/src/objects/id1/Makefile.id1.lib
-index d60c728..bf98427 100644
---- a/src/objects/id1/Makefile.id1.lib
-+++ b/src/objects/id1/Makefile.id1.lib
-@@ -4,3 +4,5 @@ LIB = id1
- SRC = id1__ id1___
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xser seqset
-diff --git a/src/objects/id1/Makefile.id1cli.lib b/src/objects/id1/Makefile.id1cli.lib
-index e87ea83..745c5cb 100644
---- a/src/objects/id1/Makefile.id1cli.lib
-+++ b/src/objects/id1/Makefile.id1cli.lib
-@@ -4,3 +4,5 @@ LIB = id1cli
- SRC = id1_client id1_client_
-
- WATCHERS = vasilche
-+
-+DLL_LIB = id1 xconnect
-diff --git a/src/objects/id2/Makefile.id2.lib b/src/objects/id2/Makefile.id2.lib
-index 09d8b36..1e74a58 100644
---- a/src/objects/id2/Makefile.id2.lib
-+++ b/src/objects/id2/Makefile.id2.lib
-@@ -2,3 +2,5 @@ LIB = id2
- SRC = id2__ id2___
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xser seq seqsplit
-diff --git a/src/objects/id2/Makefile.id2cli.lib b/src/objects/id2/Makefile.id2cli.lib
-index 5d41f23..ccec62a 100644
---- a/src/objects/id2/Makefile.id2cli.lib
-+++ b/src/objects/id2/Makefile.id2cli.lib
-@@ -4,3 +4,5 @@ LIB = id2cli
- SRC = id2_client id2_client_
-
- WATCHERS = vasilche
-+
-+DLL_LIB = id2 xconnect
-diff --git a/src/objects/insdseq/Makefile.insdseq.lib b/src/objects/insdseq/Makefile.insdseq.lib
-index fa729b7..5754057 100644
---- a/src/objects/insdseq/Makefile.insdseq.lib
-+++ b/src/objects/insdseq/Makefile.insdseq.lib
-@@ -1,2 +1,4 @@
- LIB = insdseq
- SRC = insdseq__ insdseq___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/macro/Makefile.macro.lib b/src/objects/macro/Makefile.macro.lib
-index 3a0a7c0..25a3b73 100644
---- a/src/objects/macro/Makefile.macro.lib
-+++ b/src/objects/macro/Makefile.macro.lib
-@@ -2,3 +2,5 @@
-
- LIB = macro
- SRC = macro__ macro___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/medlars/Makefile.medlars.lib b/src/objects/medlars/Makefile.medlars.lib
-index 3a6d0cd..5c8e00e 100644
---- a/src/objects/medlars/Makefile.medlars.lib
-+++ b/src/objects/medlars/Makefile.medlars.lib
-@@ -1,2 +1,4 @@
- LIB = medlars
- SRC = medlars__ medlars___
-+
-+DLL_LIB = xser biblio
-diff --git a/src/objects/medline/Makefile.medline.lib b/src/objects/medline/Makefile.medline.lib
-index ea28066..eb42aa4 100644
---- a/src/objects/medline/Makefile.medline.lib
-+++ b/src/objects/medline/Makefile.medline.lib
-@@ -1,2 +1,4 @@
- LIB = medline
- SRC = medline__ medline___
-+
-+DLL_LIB = general biblio
-diff --git a/src/objects/mim/Makefile.mim.lib b/src/objects/mim/Makefile.mim.lib
-index c2cd50e..2fed8f4 100644
---- a/src/objects/mim/Makefile.mim.lib
-+++ b/src/objects/mim/Makefile.mim.lib
-@@ -1,2 +1,4 @@
- LIB = mim
- SRC = mim__ mim___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/mla/Makefile.mla.lib b/src/objects/mla/Makefile.mla.lib
-index a748f68..5b5523a 100644
---- a/src/objects/mla/Makefile.mla.lib
-+++ b/src/objects/mla/Makefile.mla.lib
-@@ -1,2 +1,4 @@
- LIB = mla
- SRC = mla__ mla___
-+
-+DLL_LIB = xser medline pubmed pub medlars
-diff --git a/src/objects/mla/Makefile.mlacli.lib b/src/objects/mla/Makefile.mlacli.lib
-index 48af427..4cee3ac 100644
---- a/src/objects/mla/Makefile.mlacli.lib
-+++ b/src/objects/mla/Makefile.mlacli.lib
-@@ -2,3 +2,5 @@ ASN_DEP = mla
-
- LIB = mlacli
- SRC = mla_client mla_client_
-+
-+DLL_LIB = xncbi xconnect mla
-diff --git a/src/objects/mmdb/Makefile.mmdb.lib b/src/objects/mmdb/Makefile.mmdb.lib
-index 6fc8e25..5c6c100 100644
---- a/src/objects/mmdb/Makefile.mmdb.lib
-+++ b/src/objects/mmdb/Makefile.mmdb.lib
-@@ -8,3 +8,5 @@ CPPFLAGS = -I$(srcdir) -I$(top_srcdir)/src/objects/mmdb $(ORIG_CPPFLAGS)
-
- LIB = mmdb
- SRC = $(ASN:%=%__) $(ASN:%=%___)
-+
-+DLL_LIB = xser pub seq
-diff --git a/src/objects/ncbimime/Makefile.ncbimime.lib b/src/objects/ncbimime/Makefile.ncbimime.lib
-index 93cafdf..1360ade 100644
---- a/src/objects/ncbimime/Makefile.ncbimime.lib
-+++ b/src/objects/ncbimime/Makefile.ncbimime.lib
-@@ -1,2 +1,4 @@
- LIB = ncbimime
- SRC = ncbimime__ ncbimime___
-+
-+DLL_LIB = mmdb cn3d seqset cdd
-diff --git a/src/objects/objprt/Makefile.objprt.lib b/src/objects/objprt/Makefile.objprt.lib
-index 40d6b09..c00e6d2 100644
---- a/src/objects/objprt/Makefile.objprt.lib
-+++ b/src/objects/objprt/Makefile.objprt.lib
-@@ -1,2 +1,4 @@
- LIB = objprt
- SRC = objprt__ objprt___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/omssa/Makefile.omssa.lib b/src/objects/omssa/Makefile.omssa.lib
-index b79617f..e1d4a9e 100644
---- a/src/objects/omssa/Makefile.omssa.lib
-+++ b/src/objects/omssa/Makefile.omssa.lib
-@@ -2,3 +2,5 @@ APP_DEP = seq
-
- LIB = omssa
- SRC = omssa__ omssa___
-+
-+DLL_LIB = seq
-diff --git a/src/objects/pcassay/Makefile.pcassay.lib b/src/objects/pcassay/Makefile.pcassay.lib
-index 1086865..587adb5 100644
---- a/src/objects/pcassay/Makefile.pcassay.lib
-+++ b/src/objects/pcassay/Makefile.pcassay.lib
-@@ -1,2 +1,4 @@
- LIB = pcassay
- SRC = pcassay__ pcassay___
-+
-+DLL_LIB = xser pcsubstance seq
-diff --git a/src/objects/pcsubstance/Makefile.pcsubstance.lib b/src/objects/pcsubstance/Makefile.pcsubstance.lib
-index b36802e..c3f6a39 100644
---- a/src/objects/pcsubstance/Makefile.pcsubstance.lib
-+++ b/src/objects/pcsubstance/Makefile.pcsubstance.lib
-@@ -1,2 +1,4 @@
- LIB = pcsubstance
- SRC = pcsubstance__ pcsubstance___
-+
-+DLL_LIB = xser general pub
-diff --git a/src/objects/proj/Makefile.proj.lib b/src/objects/proj/Makefile.proj.lib
-index c5bb3d3..fbde99a 100644
---- a/src/objects/proj/Makefile.proj.lib
-+++ b/src/objects/proj/Makefile.proj.lib
-@@ -1,2 +1,4 @@
- LIB = proj
- SRC = proj__ proj___
-+
-+DLL_LIB = xser pubmed seqset
-diff --git a/src/objects/pub/Makefile.pub.lib b/src/objects/pub/Makefile.pub.lib
-index 78c12e1..9baa08d 100644
---- a/src/objects/pub/Makefile.pub.lib
-+++ b/src/objects/pub/Makefile.pub.lib
-@@ -1,2 +1,4 @@
- LIB = pub
- SRC = pub__ pub___
-+
-+DLL_LIB = medline biblio
-diff --git a/src/objects/pubmed/Makefile.pubmed.lib b/src/objects/pubmed/Makefile.pubmed.lib
-index 8b8d553..46e3125 100644
---- a/src/objects/pubmed/Makefile.pubmed.lib
-+++ b/src/objects/pubmed/Makefile.pubmed.lib
-@@ -1,2 +1,4 @@
- LIB = pubmed
- SRC = pubmed__ pubmed___
-+
-+DLL_LIB = xser medline
-diff --git a/src/objects/remap/Makefile.remap.lib b/src/objects/remap/Makefile.remap.lib
-index 9a35d90..1256648 100644
---- a/src/objects/remap/Makefile.remap.lib
-+++ b/src/objects/remap/Makefile.remap.lib
-@@ -1,2 +1,4 @@
- LIB = remap
- SRC = remap__ remap___
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/remap/Makefile.remapcli.lib b/src/objects/remap/Makefile.remapcli.lib
-index e45f34f..2751bf9 100644
---- a/src/objects/remap/Makefile.remapcli.lib
-+++ b/src/objects/remap/Makefile.remapcli.lib
-@@ -4,3 +4,5 @@ ASN_DEP = remap
-
- LIB = remapcli
- SRC = remap_client remap_client_
-+
-+DLL_LIB = xncbi xconnect remap
-diff --git a/src/objects/scoremat/Makefile.scoremat.lib b/src/objects/scoremat/Makefile.scoremat.lib
-index 62e01f5..93bb071 100644
---- a/src/objects/scoremat/Makefile.scoremat.lib
-+++ b/src/objects/scoremat/Makefile.scoremat.lib
-@@ -1,2 +1,4 @@
- LIB = scoremat
- SRC = scoremat__ scoremat___
-+
-+DLL_LIB = seqset seq
-diff --git a/src/objects/seq/Makefile.seq.lib b/src/objects/seq/Makefile.seq.lib
-index 1b5edc5..30ef316 100644
---- a/src/objects/seq/Makefile.seq.lib
-+++ b/src/objects/seq/Makefile.seq.lib
-@@ -13,3 +13,5 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \
- seq_loc_from_string seq_loc_reverse_complementer
-
- WATCHERS = vasilche grichenk
-+
-+DLL_LIB = general seqcode pub sequtil biblio xser xncbi xutil
-diff --git a/src/objects/seqcode/Makefile.seqcode.lib b/src/objects/seqcode/Makefile.seqcode.lib
-index dc9d60e..dabd95b 100644
---- a/src/objects/seqcode/Makefile.seqcode.lib
-+++ b/src/objects/seqcode/Makefile.seqcode.lib
-@@ -1,2 +1,4 @@
- LIB = seqcode
- SRC = seqcode__ seqcode___
-+
-+DLL_LIB = xncbi xser
-diff --git a/src/objects/seqedit/Makefile.seqedit.lib b/src/objects/seqedit/Makefile.seqedit.lib
-index 283a9b7..520b0bb 100644
---- a/src/objects/seqedit/Makefile.seqedit.lib
-+++ b/src/objects/seqedit/Makefile.seqedit.lib
-@@ -1,3 +1,4 @@
- LIB = seqedit
- SRC = seqedit__ seqedit___
-
-+DLL_LIB = xser seq seqset
-diff --git a/src/objects/seqset/Makefile.seqset.lib b/src/objects/seqset/Makefile.seqset.lib
-index 87f16d0..febce67 100644
---- a/src/objects/seqset/Makefile.seqset.lib
-+++ b/src/objects/seqset/Makefile.seqset.lib
-@@ -1,2 +1,3 @@
- LIB = seqset
- SRC = seqset__ seqset___ gb_release_file
-+DLL_LIB = xser seq
-diff --git a/src/objects/seqsplit/Makefile.seqsplit.lib b/src/objects/seqsplit/Makefile.seqsplit.lib
-index 87ae869..1743321 100644
---- a/src/objects/seqsplit/Makefile.seqsplit.lib
-+++ b/src/objects/seqsplit/Makefile.seqsplit.lib
-@@ -2,3 +2,5 @@ LIB = seqsplit
- SRC = seqsplit__ seqsplit___
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xser seq seqset
-diff --git a/src/objects/seqtest/Makefile.seqtest.lib b/src/objects/seqtest/Makefile.seqtest.lib
-index 609a12c..e3d1e4b 100644
---- a/src/objects/seqtest/Makefile.seqtest.lib
-+++ b/src/objects/seqtest/Makefile.seqtest.lib
-@@ -4,3 +4,5 @@ ASN = seqtest
-
- LIB = seqtest
- SRC = $(ASN:%=%__) $(ASN:%=%___)
-+
-+DLL_LIB = xser seq
-diff --git a/src/objects/submit/Makefile.submit.lib b/src/objects/submit/Makefile.submit.lib
-index 74798f8..c74707c 100644
---- a/src/objects/submit/Makefile.submit.lib
-+++ b/src/objects/submit/Makefile.submit.lib
-@@ -1,2 +1,3 @@
- LIB = submit
- SRC = submit__ submit___
-+DLL_LIB = xser xncbi seq biblio seqset
-diff --git a/src/objects/taxon1/Makefile.taxon1.lib b/src/objects/taxon1/Makefile.taxon1.lib
-index 61658ab..f46db75 100644
---- a/src/objects/taxon1/Makefile.taxon1.lib
-+++ b/src/objects/taxon1/Makefile.taxon1.lib
-@@ -3,3 +3,5 @@ LIB = taxon1
- SRC = taxon1__ taxon1___ taxon1 cache utils ctreecont
-
- WATCHERS = domrach
-+
-+DLL_LIB = xser seq xconnect
-diff --git a/src/objects/taxon3/Makefile.taxon3.lib b/src/objects/taxon3/Makefile.taxon3.lib
-index 7e4c93d..00be2c0 100644
---- a/src/objects/taxon3/Makefile.taxon3.lib
-+++ b/src/objects/taxon3/Makefile.taxon3.lib
-@@ -4,3 +4,5 @@ LIB = taxon3
- SRC = taxon3__ taxon3___ taxon3
-
- WATCHERS = bollin
-+
-+DLL_LIB = connect xser xconnect seq
-diff --git a/src/objects/tinyseq/Makefile.tinyseq.lib b/src/objects/tinyseq/Makefile.tinyseq.lib
-index 1c7ccf3..e1954cc 100644
---- a/src/objects/tinyseq/Makefile.tinyseq.lib
-+++ b/src/objects/tinyseq/Makefile.tinyseq.lib
-@@ -1,2 +1,4 @@
- LIB = tinyseq
- SRC = tinyseq__ tinyseq___
-+
-+DLL_LIB = xser
-diff --git a/src/objects/valerr/Makefile.valerr.lib b/src/objects/valerr/Makefile.valerr.lib
-index b202355..9699bb2 100644
---- a/src/objects/valerr/Makefile.valerr.lib
-+++ b/src/objects/valerr/Makefile.valerr.lib
-@@ -2,3 +2,5 @@ LIB = valerr
- SRC = valerr__ valerr___
-
- ASN_DEP = seqset
-+
-+DLL_LIB = xser
-diff --git a/src/objects/valid/Makefile.valid.lib b/src/objects/valid/Makefile.valid.lib
-index 86a00a0..64226d6 100644
---- a/src/objects/valid/Makefile.valid.lib
-+++ b/src/objects/valid/Makefile.valid.lib
-@@ -1,3 +1,5 @@
- # $Id: Makefile.valid.lib 156738 2009-04-07 16:35:10Z ucko $
- LIB = valid
- SRC = valid__ valid___
-+
-+DLL_LIB = xser xregexp
-diff --git a/src/objects/variation/Makefile.variation.lib b/src/objects/variation/Makefile.variation.lib
-index f21f84a..9ba5e9d 100644
---- a/src/objects/variation/Makefile.variation.lib
-+++ b/src/objects/variation/Makefile.variation.lib
-@@ -1,2 +1,3 @@
- LIB = variation
- SRC = variation__ variation___
-+DLL_LIB = xser general seq
-diff --git a/src/objmgr/split/Makefile.id2_split.lib b/src/objmgr/split/Makefile.id2_split.lib
-index fafa70a..8a53975 100644
---- a/src/objmgr/split/Makefile.id2_split.lib
-+++ b/src/objmgr/split/Makefile.id2_split.lib
-@@ -17,6 +17,6 @@ LIB = id2_split
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
-
--DLL_LIB = $(SOBJMGR_LIBS)
-+DLL_LIB = $(SOBJMGR_LIBS) seqsplit xcompress
-
- WATCHERS = vasilche
-diff --git a/src/objmgr/util/Makefile.util.lib b/src/objmgr/util/Makefile.util.lib
-index 90eeee0..138e836 100644
---- a/src/objmgr/util/Makefile.util.lib
-+++ b/src/objmgr/util/Makefile.util.lib
-@@ -10,3 +10,4 @@ LIB = xobjutil
-
- WATCHERS = ucko vasilche
-
-+DLL_LIB = xser xobjmgr
-diff --git a/src/objtools/align/Makefile.xalntool.lib b/src/objtools/align/Makefile.xalntool.lib
-index cb9846d..9c2a8f9 100644
---- a/src/objtools/align/Makefile.xalntool.lib
-+++ b/src/objtools/align/Makefile.xalntool.lib
-@@ -6,3 +6,5 @@ ASN_DEP = seqset
-
- LIB = xalntool
- SRC = alngraphic
-+
-+DLL_LIB = access dbapi_driver general seq xhtml xncbi xobjmgr xobjutil xser # align_format axf blastinput
-diff --git a/src/objtools/align_format/Makefile.align_format.lib b/src/objtools/align_format/Makefile.align_format.lib
-index 4b3e59e..c67c352 100644
---- a/src/objtools/align_format/Makefile.align_format.lib
-+++ b/src/objtools/align_format/Makefile.align_format.lib
-@@ -18,3 +18,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
- # LIB_OR_DLL = dll
-
- WATCHERS = zaretska jianye madden camacho
-+
-+DLL_LIB = seqdb blastdb xser xhtml gene_info xnetblast blast_services ncbi_xloader_genbank xalnmgr xcgi xobjread xobjutil
-diff --git a/src/objtools/alnmgr/Makefile.alnmgr.lib b/src/objtools/alnmgr/Makefile.alnmgr.lib
-index e32c351..41355ff 100644
---- a/src/objtools/alnmgr/Makefile.alnmgr.lib
-+++ b/src/objtools/alnmgr/Makefile.alnmgr.lib
-@@ -12,3 +12,4 @@ SRC = aln_builders aln_converters aln_generators aln_seqid aln_serial \
-
- WATCHERS = todorov dicuccio grichenk
-
-+DLL_LIB = tables dbapi_driver ncbi_xcache_bdb seq seqset sequtil xncbi xobjmgr xobjutil xser # align_format axf
-diff --git a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-index d8177ed..aa4d8e4 100644
---- a/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-+++ b/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib
-@@ -18,3 +18,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS)
- # CXXFLAGS = $(FAST_CXXFLAGS)
- #
- # LIB_OR_DLL = dll
-+
-+DLL_LIB = xncbi xser xobjutil seq seqdb
-diff --git a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-index bf5fd1b..c32aca4 100644
---- a/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-+++ b/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib
-@@ -4,3 +4,5 @@ WATCHERS = camacho
-
- LIB = gene_info
- SRC = gene_info gene_info_reader file_utils
-+
-+DLL_LIB = xncbi
-diff --git a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-index b0a00dc..37569f8 100644
---- a/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-+++ b/src/objtools/blast/gene_info_writer/Makefile.gene_info_writer.lib
-@@ -6,3 +6,5 @@ LIB = gene_info_writer
- SRC = gene_info_writer
-
- ASN_DEP = blastdb
-+
-+DLL_LIB = gene_info xncbi seqdb
-diff --git a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-index 25898aa..0b0e478 100644
---- a/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-+++ b/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-@@ -29,3 +29,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = maning camacho
-+
-+DLL_LIB = blastdb xobjmgr
-diff --git a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-index 7b9c8e1..6dbdbaa 100644
---- a/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-+++ b/src/objtools/blast/seqdb_writer/Makefile.writedb.lib
-@@ -13,3 +13,5 @@ CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
- WATCHERS = maning camacho
-+
-+DLL_LIB = seq blastdb seqdb xobjmgr xobjread xutil
-diff --git a/src/objtools/blast/services/Makefile.blast_services.lib b/src/objtools/blast/services/Makefile.blast_services.lib
-index 10a878c..7a70b22 100644
---- a/src/objtools/blast/services/Makefile.blast_services.lib
-+++ b/src/objtools/blast/services/Makefile.blast_services.lib
-@@ -12,3 +12,4 @@ CFLAGS = $(FAST_CFLAGS)
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = xncbi xser xnetblast xnetblastcli
-diff --git a/src/objtools/cddalignview/Makefile.cddalignview.lib b/src/objtools/cddalignview/Makefile.cddalignview.lib
-index 8e39baa..f4d3a35 100644
---- a/src/objtools/cddalignview/Makefile.cddalignview.lib
-+++ b/src/objtools/cddalignview/Makefile.cddalignview.lib
-@@ -11,3 +11,5 @@ SRC = \
- cav_seqset
-
- LIB = xcddalignview
-+
-+DLL_LIB = cdd dbapi_driver general ncbimime seq seqset xncbi xser # align_format axf ncbi_xloader_bam
-diff --git a/src/objtools/cleanup/Makefile.cleanup.lib b/src/objtools/cleanup/Makefile.cleanup.lib
-index 663d755..ad7b3cf 100644
---- a/src/objtools/cleanup/Makefile.cleanup.lib
-+++ b/src/objtools/cleanup/Makefile.cleanup.lib
-@@ -10,7 +10,7 @@ SRC = autogenerated_cleanup cleanup \
- cleanup_utils \
- newcleanupp
-
--DLL_LIB = xregexp $(PCRE_LIB)
-+DLL_LIB = xregexp $(PCRE_LIB) access biblio general pub seq seqset sequtil submit xobjmgr xobjutil xser
- LIB = xcleanup
-
- LIBS = $(PCRE_LIBS)
-diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-index 80af69f..704ed7a 100644
---- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-@@ -6,3 +6,6 @@ SRC = bdbloader cached_sequence local_blastdb_adapter
- ASN_DEP = blastdb seqset
-
- WATCHERS = camacho
-+
-+DLL_LIB = seqdb
-+
-diff --git a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-index 80abb48..2ddec92 100644
---- a/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-+++ b/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-@@ -6,3 +6,5 @@ SRC = bdbloader_rmt remote_blastdb_adapter
- ASN_DEP = blastdb xnetblast
-
- WATCHERS = camacho
-+
-+DLL_LIB = blast_services ncbi_xloader_blastdb xobjmgr
-diff --git a/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib b/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
-index a51042b..fa92fc9 100644
---- a/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
-+++ b/src/objtools/data_loaders/cdd/Makefile.ncbi_xloader_cdd.lib
-@@ -9,3 +9,5 @@ LIB = ncbi_xloader_cdd
- SRC = cdd
-
- ASN_DEP = seqset
-+
-+DLL_LIB = dbapi_driver general seq seqset xconnect xncbi xobjmgr xser # align_format axf ncbi_xloader_bam
-diff --git a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-index f2b2b49..864e4b1 100644
---- a/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-+++ b/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib
-@@ -12,6 +12,6 @@ LIB = ncbi_xreader
- LIB_OR_DLL = both
-
- # Dependencies for shared library
--DLL_LIB =
-+DLL_LIB = xcompress xobjmgr seqsplit xconnect id1 id2
-
- WATCHERS = vasilche
-diff --git a/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib b/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
-index 0a29cbf..74c30dc 100644
---- a/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
-+++ b/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib
-@@ -15,3 +15,5 @@ CPPFLAGS = $(ORIG_CPPFLAGS) $(Z_INCLUDE)
- # DLL_LIB = xconnect ncbi_xreader$(DLL)
-
- WATCHERS = vasilche
-+
-+DLL_LIB = xncbi gene_info id2 ncbi_xreader xconnect xser
-diff --git a/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib b/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
-index 8d09d8c..d6040ed 100644
---- a/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
-+++ b/src/objtools/data_loaders/patcher/Makefile.ncbi_xloader_patcher.lib
-@@ -7,3 +7,5 @@ ASN_DEP = seq seqset seqedit
-
-
- WATCHERS = vasilche
-+
-+DLL_LIB = dbapi_driver seq seqedit seqset xncbi xobjmgr xser # axf
-diff --git a/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib b/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
-index d2debd5..33fed34 100644
---- a/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
-+++ b/src/objtools/data_loaders/trace/Makefile.xloader_trace.lib
-@@ -9,3 +9,5 @@ LIB = ncbi_xloader_trace
- SRC = trace_chgr
-
- ASN_DEP = id1
-+
-+DLL_LIB = dbapi_driver general id1 id1cli seq xncbi xobjmgr xser # align_format axf
-diff --git a/src/objtools/edit/Makefile.edit.lib b/src/objtools/edit/Makefile.edit.lib
-index 7ce0d11..f5458c5 100644
---- a/src/objtools/edit/Makefile.edit.lib
-+++ b/src/objtools/edit/Makefile.edit.lib
-@@ -11,3 +11,5 @@ LIB = xobjedit
- ASN_DEP = seqset
-
- WATCHERS = bollin
-+
-+DLL_LIB = xncbi seq xobjutil xobjmgr
-diff --git a/src/objtools/eutils/api/Makefile.eutils.lib b/src/objtools/eutils/api/Makefile.eutils.lib
-index da71ea9..b444e72 100644
---- a/src/objtools/eutils/api/Makefile.eutils.lib
-+++ b/src/objtools/eutils/api/Makefile.eutils.lib
-@@ -10,3 +10,5 @@ ASN_DEP = einfo esearch egquery epost elink esummary espell uilist \
- ehistory
-
- WATCHERS = grichenk
-+
-+DLL_LIB = dbapi_driver xconnect xncbi xser # align_format axf ncbi_xloader_bam
-diff --git a/src/objtools/eutils/egquery/Makefile.egquery.lib b/src/objtools/eutils/egquery/Makefile.egquery.lib
-index 82b4ed0..7030a29 100644
---- a/src/objtools/eutils/egquery/Makefile.egquery.lib
-+++ b/src/objtools/eutils/egquery/Makefile.egquery.lib
-@@ -4,3 +4,5 @@ LIB = egquery
- SRC = egquery__ egquery___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/ehistory/Makefile.ehistory.lib b/src/objtools/eutils/ehistory/Makefile.ehistory.lib
-index f99ca0f..5683a74 100644
---- a/src/objtools/eutils/ehistory/Makefile.ehistory.lib
-+++ b/src/objtools/eutils/ehistory/Makefile.ehistory.lib
-@@ -4,3 +4,5 @@ LIB = ehistory
- SRC = ehistory__ ehistory___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/einfo/Makefile.einfo.lib b/src/objtools/eutils/einfo/Makefile.einfo.lib
-index e18413d..7eaee71 100644
---- a/src/objtools/eutils/einfo/Makefile.einfo.lib
-+++ b/src/objtools/eutils/einfo/Makefile.einfo.lib
-@@ -4,3 +4,5 @@ LIB = einfo
- SRC = einfo__ einfo___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/elink/Makefile.elink.lib b/src/objtools/eutils/elink/Makefile.elink.lib
-index 87f352c..692835c 100644
---- a/src/objtools/eutils/elink/Makefile.elink.lib
-+++ b/src/objtools/eutils/elink/Makefile.elink.lib
-@@ -4,3 +4,5 @@ LIB = elink
- SRC = elink__ elink___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/epost/Makefile.epost.lib b/src/objtools/eutils/epost/Makefile.epost.lib
-index 4a456ed..d73f41b 100644
---- a/src/objtools/eutils/epost/Makefile.epost.lib
-+++ b/src/objtools/eutils/epost/Makefile.epost.lib
-@@ -4,3 +4,5 @@ LIB = epost
- SRC = epost__ epost___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/esearch/Makefile.esearch.lib b/src/objtools/eutils/esearch/Makefile.esearch.lib
-index bb5b64b..71912da 100644
---- a/src/objtools/eutils/esearch/Makefile.esearch.lib
-+++ b/src/objtools/eutils/esearch/Makefile.esearch.lib
-@@ -4,3 +4,5 @@ LIB = esearch
- SRC = esearch__ esearch___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/espell/Makefile.espell.lib b/src/objtools/eutils/espell/Makefile.espell.lib
-index 7cf1a34..25be846 100644
---- a/src/objtools/eutils/espell/Makefile.espell.lib
-+++ b/src/objtools/eutils/espell/Makefile.espell.lib
-@@ -4,3 +4,5 @@ LIB = espell
- SRC = espell__ espell___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/esummary/Makefile.esummary.lib b/src/objtools/eutils/esummary/Makefile.esummary.lib
-index 4d3e058..1f74c06 100644
---- a/src/objtools/eutils/esummary/Makefile.esummary.lib
-+++ b/src/objtools/eutils/esummary/Makefile.esummary.lib
-@@ -4,3 +4,5 @@ LIB = esummary
- SRC = esummary__ esummary___
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/linkout/Makefile.linkout.lib b/src/objtools/eutils/linkout/Makefile.linkout.lib
-index 19b2b8a..77dcc3c 100644
---- a/src/objtools/eutils/linkout/Makefile.linkout.lib
-+++ b/src/objtools/eutils/linkout/Makefile.linkout.lib
-@@ -4,3 +4,5 @@ SRC = linkout__ linkout___
- LIB = linkout
-
- WATCHERS = grichenk
-+
-+DLL_LIB = xser
-diff --git a/src/objtools/eutils/uilist/Makefile.uilist.lib b/src/objtools/eutils/uilist/Makefile.uilist.lib
-index b49c3c5..2ee63f0 100644
---- a/src/objtools/eutils/uilist/Makefile.uilist.lib
-+++ b/src/objtools/eutils/uilist/Makefile.uilist.lib
-@@ -4,3 +4,5 @@ SRC = uilist__ uilist___
- LIB = uilist
-
- WATCHERS = grichenk
-+
-+DLL_LIB = access dbapi_driver xncbi xser # align_format axf
-diff --git a/src/objtools/format/Makefile.xformat.lib b/src/objtools/format/Makefile.xformat.lib
-index a4fc469..fa58b3c 100644
---- a/src/objtools/format/Makefile.xformat.lib
-+++ b/src/objtools/format/Makefile.xformat.lib
-@@ -19,3 +19,5 @@ SRC = accession_item basecount_item comment_item contig_item date_item \
- gather_iter html_anchor_item inst_info_map
-
- WATCHERS = ludwigf dicuccio kornbluh
-+
-+DLL_LIB = submit connect xncbi gbseq xobjmgr xobjutil xalnmgr xconnect
-diff --git a/src/objtools/lds/Makefile.lds.lib b/src/objtools/lds/Makefile.lds.lib
-index e371035..689cfb4 100644
---- a/src/objtools/lds/Makefile.lds.lib
-+++ b/src/objtools/lds/Makefile.lds.lib
-@@ -9,6 +9,6 @@ SRC = lds lds_reader lds_query \
- lds_coreobjreader lds_files lds_object lds_manager
-
- # Dependencies for shared library
--DLL_LIB = bdb
-+DLL_LIB = bdb seq xobjread xobjmgr xobjutil
-
- WATCHERS = vasilche
-diff --git a/src/objtools/manip/Makefile.xobjmanip.lib b/src/objtools/manip/Makefile.xobjmanip.lib
-index 300ceb2..4a81ac9 100644
---- a/src/objtools/manip/Makefile.xobjmanip.lib
-+++ b/src/objtools/manip/Makefile.xobjmanip.lib
-@@ -6,3 +6,5 @@ LIB = xobjmanip
- SRC = sage_manip
-
- WATCHERS = dicuccio
-+
-+DLL_LIB = xncbi general
-diff --git a/src/objtools/readers/Makefile.xobjread.lib b/src/objtools/readers/Makefile.xobjread.lib
-index 0fbffd4..4ca9fed 100644
---- a/src/objtools/readers/Makefile.xobjread.lib
-+++ b/src/objtools/readers/Makefile.xobjread.lib
-@@ -19,5 +19,4 @@ SRC = read_util format_guess_ex \
- best_feat_finder source_mod_parser fasta_exception
-
-
--DLL_LIB = creaders
--
-+DLL_LIB = creaders xncbi seq biblio seqset
-diff --git a/src/objtools/readers/Makefile.xobjreadex.lib b/src/objtools/readers/Makefile.xobjreadex.lib
-index 85eefe2..9f317ae 100644
---- a/src/objtools/readers/Makefile.xobjreadex.lib
-+++ b/src/objtools/readers/Makefile.xobjreadex.lib
-@@ -8,4 +8,4 @@ LIB = xobjreadex
- SRC = glimmer_reader idmapper idmapper_builtin idmapper_config \
- idmapper_database source_mod_parser_wrapper
-
--DLL_LIB = xobjread
-+DLL_LIB = xobjread xncbi xutil seq xobjmgr xobjutil
-diff --git a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-index 687af1e..f48568c 100644
---- a/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-+++ b/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib
-@@ -11,6 +11,6 @@ mask_writer_seqloc \
- mask_writer_blastdb_maskinfo
-
- ASN_DEP = seqset
--DLL_LIB = seqdb blastdb
-+DLL_LIB = seqdb blastdb xobjread xobjutil
-
- WATCHERS = morgulis camacho
-diff --git a/src/objtools/simple/Makefile.xobjsimple.lib b/src/objtools/simple/Makefile.xobjsimple.lib
-index dab25d6..f676dc7 100644
---- a/src/objtools/simple/Makefile.xobjsimple.lib
-+++ b/src/objtools/simple/Makefile.xobjsimple.lib
-@@ -10,3 +10,4 @@ ASN_DEP = seqset
- LIB = xobjsimple
- SRC = simple_om
-
-+DLL_LIB = xobjmgr ncbi_xloader_genbank
-diff --git a/src/objtools/snputil/Makefile.snputil.lib b/src/objtools/snputil/Makefile.snputil.lib
-index 15abef3..5ad1560 100644
---- a/src/objtools/snputil/Makefile.snputil.lib
-+++ b/src/objtools/snputil/Makefile.snputil.lib
-@@ -9,3 +9,5 @@ SRC = snp_utils snp_bitfield \
- ASN_DEP = seqset
-
- WATCHERS = rudnev
-+
-+DLL_LIB = general seq xncbi xobjmgr xser
-diff --git a/src/objtools/validator/Makefile.validator.lib b/src/objtools/validator/Makefile.validator.lib
-index 80a74d8..6eec94b 100644
---- a/src/objtools/validator/Makefile.validator.lib
-+++ b/src/objtools/validator/Makefile.validator.lib
-@@ -19,3 +19,5 @@ NOOPT_CXX = $(CXX_WRAPPER) $(CXX) $(CXXFLAGS_ALL:-xO%=)
-
- lat_lon_country_map.o: $(srcdir)/lat_lon_country_map.cpp
- $(NOOPT_CXX) $(srcdir)/lat_lon_country_map.cpp -o $@ $(CXX_FILTER)
-+
-+DLL_LIB = xncbi xobjutil xalnmgr xformat taxon3 valerr valid
-diff --git a/src/objtools/writers/Makefile.xobjwrite.lib b/src/objtools/writers/Makefile.xobjwrite.lib
-index cd6596b..a7d0c01 100644
---- a/src/objtools/writers/Makefile.xobjwrite.lib
-+++ b/src/objtools/writers/Makefile.xobjwrite.lib
-@@ -15,3 +15,4 @@ SRC = agp_write \
-
- WATCHERS = ludwigf boukn
-
-+DLL_LIB = xobjutil xalnmgr
-diff --git a/src/sample/app/asn/Makefile.sample_asn.lib b/src/sample/app/asn/Makefile.sample_asn.lib
-index 0db9ebd..26e6ad9 100644
---- a/src/sample/app/asn/Makefile.sample_asn.lib
-+++ b/src/sample/app/asn/Makefile.sample_asn.lib
-@@ -10,3 +10,5 @@ LIB = sample_asn
- ASN_DEP = general
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver general xncbi xser
-diff --git a/src/sample/app/soap/Makefile.soap_dataobj.lib b/src/sample/app/soap/Makefile.soap_dataobj.lib
-index 4b87f51..c398ded 100644
---- a/src/sample/app/soap/Makefile.soap_dataobj.lib
-+++ b/src/sample/app/soap/Makefile.soap_dataobj.lib
-@@ -2,3 +2,5 @@ LIB = soap_dataobj
- SRC = soap_dataobj__ soap_dataobj___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib b/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
-index f9d6103..4c22831 100644
---- a/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
-+++ b/src/sample/lib/asn_lib/Makefile.asn_sample_lib.lib
-@@ -2,3 +2,5 @@ LIB = asn_sample_lib
- SRC = asn_sample_lib__ asn_sample_lib___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/sample/lib/basic/Makefile.basic_sample_lib.lib b/src/sample/lib/basic/Makefile.basic_sample_lib.lib
-index a6ba11a..364d9fc 100644
---- a/src/sample/lib/basic/Makefile.basic_sample_lib.lib
-+++ b/src/sample/lib/basic/Makefile.basic_sample_lib.lib
-@@ -5,3 +5,5 @@ SRC = basic_sample_lib
-
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi
-diff --git a/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib b/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
-index d2a27ef..a63a7e8 100644
---- a/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
-+++ b/src/sample/lib/dtd/Makefile.dtd_sample_lib.lib
-@@ -2,3 +2,5 @@ LIB = dtd_sample_lib
- SRC = dtd_sample_lib__ dtd_sample_lib___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib b/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
-index 4b7b6e2..838e8ea 100644
---- a/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
-+++ b/src/sample/lib/xsd/Makefile.xsd_sample_lib.lib
-@@ -2,3 +2,5 @@ LIB = xsd_sample_lib
- SRC = xsd_sample_lib__ xsd_sample_lib___
-
- WATCHERS = gouriano
-+
-+DLL_LIB = access align_format axf dbapi_driver xncbi xser
-diff --git a/src/serial/Makefile.serial.lib b/src/serial/Makefile.serial.lib
-index 2563b5f..efad054 100644
---- a/src/serial/Makefile.serial.lib
-+++ b/src/serial/Makefile.serial.lib
-@@ -19,3 +19,5 @@ SRC = \
- LIB = xser
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/serial/soap/Makefile.soap.lib b/src/serial/soap/Makefile.soap.lib
-index e77d4ee..3b28bc4 100644
---- a/src/serial/soap/Makefile.soap.lib
-+++ b/src/serial/soap/Makefile.soap.lib
-@@ -8,3 +8,5 @@ SRC = soap_message soap_readhook soap_writehook soap_client \
- LIB = xsoap
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi xutil xser xconnect
-diff --git a/src/serial/soap/Makefile.soap_server.lib b/src/serial/soap/Makefile.soap_server.lib
-index c961496..0ccb2f0 100644
---- a/src/serial/soap/Makefile.soap_server.lib
-+++ b/src/serial/soap/Makefile.soap_server.lib
-@@ -9,3 +9,5 @@ LIB = xsoap_server
- REQUIRES = cgi
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xncbi xutil xcgi xsoap xser
-diff --git a/src/serial/test/Makefile.we_cpp.lib b/src/serial/test/Makefile.we_cpp.lib
-index 9877691..599ef5d 100644
---- a/src/serial/test/Makefile.we_cpp.lib
-+++ b/src/serial/test/Makefile.we_cpp.lib
-@@ -3,3 +3,4 @@ SRC = we_cpp__ we_cpp___
-
- WATCHERS = gouriano
-
-+DLL_LIB = xncbi xutil xser
-diff --git a/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib b/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
-index 4896661..8e2ad56 100644
---- a/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
-+++ b/src/sra/data_loaders/bam/Makefile.ncbi_xloader_bam.lib
-@@ -12,7 +12,7 @@ ASN_DEP = seqset seq
-
- LIB_OR_DLL = both
-
--DLL_LIB = $(SOBJMGR_LIBS) bamread$(STATIC) $(BAM_LIBS) $(CMPRS_LIB)
-+DLL_LIB = $(SOBJMGR_LIBS) bamread$(STATIC) $(BAM_LIBS) $(CMPRS_LIB) xobjreadex
- LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
-
- CPPFLAGS = $(SRA_INCLUDE) -DNCBI_XLOADER_BAM_EXPORTS $(ORIG_CPPFLAGS)
-diff --git a/src/sra/sdk/libs/align/Makefile.align-writer.lib b/src/sra/sdk/libs/align/Makefile.align-writer.lib
-index f2a2f58..f61b25a 100644
---- a/src/sra/sdk/libs/align/Makefile.align-writer.lib
-+++ b/src/sra/sdk/libs/align/Makefile.align-writer.lib
-@@ -6,7 +6,7 @@ LIB = align-writer
- SRC = dna-reverse-cmpl reader-cmn reader-refseq refseq-mgr writer-cmn \
- writer-refseq writer-alignment writer-sequence writer-ref writer-reference
-
--DLL_LIB = wvdb wkdb load kfg kfs klib $(Z_LIB)
-+DLL_LIB = wvdb wkdb load kfg kfs klib kapp $(Z_LIB)
- LIBS = $(Z_LIBS) $(ORIG_LIBS)
-
- CPPFLAGS = $(SRA_INCLUDE) $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY $(ORIG_CPPFLAGS)
-diff --git a/src/util/Makefile.util.lib b/src/util/Makefile.util.lib
-index f103ff1..829a71c 100644
---- a/src/util/Makefile.util.lib
-+++ b/src/util/Makefile.util.lib
-@@ -14,3 +14,5 @@ PROJ_TAG = core
- LIBS = $(ORIG_LIBS)
-
- WATCHERS = vakatov
-+
-+DLL_LIB = xncbi
-diff --git a/src/util/compress/api/Makefile.compress.lib b/src/util/compress/api/Makefile.compress.lib
-index ae22234..2ce803a 100644
---- a/src/util/compress/api/Makefile.compress.lib
-+++ b/src/util/compress/api/Makefile.compress.lib
-@@ -6,7 +6,7 @@ LIB = xcompress
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
-
--DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB)
-+DLL_LIB = $(BZ2_LIB) $(Z_LIB) $(LZO_LIB) xutil xncbi
- LIBS = $(BZ2_LIBS) $(Z_LIBS) $(LZO_LIBS)
-
- WATCHERS = ivanov
-diff --git a/src/util/qparse/Makefile.xqueryparse.lib b/src/util/qparse/Makefile.xqueryparse.lib
-index a003930..0505da7 100644
---- a/src/util/qparse/Makefile.xqueryparse.lib
-+++ b/src/util/qparse/Makefile.xqueryparse.lib
-@@ -7,3 +7,5 @@ query_parser_bison.tab.c : query_parser_bison.y
- bison -v -p ncbi_q_ -o query_parser_bison.tab.c query_parser_bison.y
-
- WATCHERS = kuznets
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/util/regexp/Makefile.regexp.lib b/src/util/regexp/Makefile.regexp.lib
-index 0f8d5e8..83a82af 100644
---- a/src/util/regexp/Makefile.regexp.lib
-+++ b/src/util/regexp/Makefile.regexp.lib
-@@ -10,3 +10,5 @@ LIB = regexp
- CPPFLAGS = -I$(includedir)/util/regexp -DHAVE_CONFIG_H $(ORIG_CPPFLAGS)
-
- WATCHERS = ivanov
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/util/sequtil/Makefile.sequtil.lib b/src/util/sequtil/Makefile.sequtil.lib
-index c068a32..453c911 100644
---- a/src/util/sequtil/Makefile.sequtil.lib
-+++ b/src/util/sequtil/Makefile.sequtil.lib
-@@ -4,3 +4,5 @@ LIB = sequtil
- SRC = sequtil sequtil_convert sequtil_convert_imp sequtil_manip sequtil_tables sequtil_shared
-
- WATCHERS = shomrat
-+
-+DLL_LIB = xncbi xutil
-diff --git a/src/util/xregexp/Makefile.xregexp.lib b/src/util/xregexp/Makefile.xregexp.lib
-index 965fac4..3accea3 100644
---- a/src/util/xregexp/Makefile.xregexp.lib
-+++ b/src/util/xregexp/Makefile.xregexp.lib
-@@ -6,7 +6,7 @@ LIB = xregexp
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(PCRE_INCLUDE)
-
--DLL_LIB = $(PCRE_LIB)
-+DLL_LIB = $(PCRE_LIB) xutil xncbi
- LIBS = $(PCRE_LIBS)
-
- WATCHERS = ivanov
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-conf-opts.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-conf-opts.patch
deleted file mode 100644
index 8209603..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-conf-opts.patch
+++ /dev/null
@@ -1,213 +0,0 @@
- src/build-system/configure | 34 +++++++++++++++++++++++-----------
- src/build-system/configure.ac | 33 ++++++++++++++++++++++-----------
- 2 files changed, 45 insertions(+), 22 deletions(-)
-
-diff --git a/src/build-system/configure b/src/build-system/configure
-index 82fc9ef..d31a4f2 100755
---- a/src/build-system/configure
-+++ b/src/build-system/configure
-@@ -924,7 +924,7 @@ Optional Packages:
- --without-distcc do not automatically use distcc if available
- --without-ncbi-c do not use NCBI C Toolkit
- --without-sss do not use NCBI SSS libraries
-- --without-utils do not use NCBI SSS UTIL library
-+ --without-sssutils do not use NCBI SSS UTIL library
- --without-sssdb do not use NCBI SSS DB library
- --with-included-sss use the in-tree copy of SSS
- --with-z=DIR use zlib installation in DIR
-@@ -2835,12 +2835,12 @@ check ncbi-public strip pch caution ccache distcc \
- ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
- geo included-geo \
- z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
--ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
-+ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
- bdb python jni sqlite3 icu boost boost-tag \
- sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
- gif jpeg tiff png xpm magic curl 3psw \
- local-lbsm ncbi-crypt connext \
--serial objects dbapi app ctools gui algo internal gbench"
-+serial objects dbapi app ctools gui algo internal gbench x"
-
- x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-
-@@ -2864,6 +2864,7 @@ for x_arg in "$@" ; do
- case "$x_arg" in
- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-+ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
- | --with-relative-runpath= | --x-includes= | --x-libraries= )
- { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
- echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
-@@ -2876,6 +2877,7 @@ echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
- | --with-universal=* | --with-tcheck=* \
- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-+ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
- | [A-Z]*=* \
- | --with-z=* | --with-bz2=* | --with-lzo=* \
- | --with-pcre=* \
-@@ -3023,7 +3025,8 @@ echo "$as_me: error: --without-extra-action is not allowed" >&2;}
- fi
-
- case "$with_projects" in
-- "") if test -r projects; then
-+ ""|yes)
-+ if test -r projects; then
- { echo "$as_me:$LINENO: using default projects file \"projects\"." >&5
- echo "$as_me: using default projects file \"projects\"." >&6;}
- with_projects=projects
-@@ -3049,6 +3052,16 @@ echo "$as_me: WARNING: default projects file \"projects\" is a dangling link." >
- ;;
- esac
-
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ as_fn_error $? "unable to read requested projects file \"$abs_projects\"." "$LINENO" 5
-+fi
-+
-
- #### Always define this
-
-@@ -32712,7 +32725,7 @@ else
- sep=", "
- fi
- if test -n "$reason" -a "$with_internal" = "yes"; then
-- if test -z "$with_projects" -o "$with_projects" = "no"; then
-+ if test -z "$with_projects"; then
- { { echo "$as_me:$LINENO: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&5
- echo "$as_me: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&2;}
- { (exit 1); exit 1; }; }
-@@ -34949,11 +34962,9 @@ if test "$with_flat_makefile" != "no"; then
- else
- cfm_flags='-remoteptb'
- fi
-- case "$with_projects" in
-- yes ) cfm_flags="$cfm_flags -p projects" ;;
-- no | '' ) ;;
-- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
-- esac
-+ if test -n "$with_projects"; then
-+ cfm_flags="$cfm_flags -p $with_projects"
-+ fi
- if test "$with_configure_dialog" = yes; then
- cfm_flags="$cfm_flags -cfg"
- fi
-@@ -34997,7 +35008,8 @@ lib)
- esac
-
- if test -n "$with_projects"; then
-- build_proj="To build selected projects: cd $builddir && make all_p"
-+ build_proj="To build selected projects (as listed in \"$with_projects\"):
-+ cd $builddir && make all_p"
- fi
-
- cat << EOCONF
-diff --git a/src/build-system/configure.ac b/src/build-system/configure.ac
-index 7b733af..3b55bf5 100644
---- a/src/build-system/configure.ac
-+++ b/src/build-system/configure.ac
-@@ -222,7 +222,7 @@ AC_ARG_WITH(ncbi-c,
- AC_ARG_WITH(sss,
- [ --without-sss do not use NCBI SSS libraries])
- AC_ARG_WITH(sssutils,
-- [ --without-utils do not use NCBI SSS UTIL library])
-+ [ --without-sssutils do not use NCBI SSS UTIL library])
- AC_ARG_WITH(sssdb,
- [ --without-sssdb do not use NCBI SSS DB library])
- AC_ARG_WITH(included-sss,
-@@ -462,12 +462,12 @@ check ncbi-public strip pch caution ccache distcc \
- ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
- geo included-geo \
- z bz2 lzo pcre gnutls openssl sybase sybase-local sybase-new \
--ftds mysql orbacus freetype fltk opengl mesa glut glew glew-mx \
-+ftds mysql orbacus odbc freetype fltk opengl mesa glut glew glew-mx \
- bdb python jni sqlite3 icu boost boost-tag \
- sp expat sablot libxml libxslt xerces xalan oechem sge muparser hdf5 \
- gif jpeg tiff png xpm magic curl 3psw \
- local-lbsm ncbi-crypt connext \
--serial objects dbapi app ctools gui algo internal gbench"
-+serial objects dbapi app ctools gui algo internal gbench x"
-
- changequote(, )dnl
- x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-@@ -493,6 +493,7 @@ for x_arg in "$@" ; do
- case "$x_arg" in
- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-+ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
- | --with-relative-runpath= | --x-includes= | --x-libraries= )
- AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
- ;;
-@@ -503,6 +504,7 @@ for x_arg in "$@" ; do
- | --with-universal=* | --with-tcheck=* \
- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-+ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
- | [[A-Z]*=*] \
- | --with-z=* | --with-bz2=* | --with-lzo=* \
- | --with-pcre=* \
-@@ -581,7 +583,8 @@ if test "$with_extra_action" = "no" ; then
- fi
-
- case "$with_projects" in
-- "") if test -r projects; then
-+ ""|yes)
-+ if test -r projects; then
- AC_MSG_NOTICE([using default projects file "projects".])
- with_projects=projects
- AC_SUBST(PROJECTS, "\$(top_srcdir)/projects")
-@@ -599,6 +602,15 @@ case "$with_projects" in
- * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
- esac
-
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
-+fi
-
- #### Always define this
- AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
-@@ -6198,7 +6210,7 @@ else
- sep=", "
- fi
- if test -n "$reason" -a "$with_internal" = "yes"; then
-- if test -z "$with_projects" -o "$with_projects" = "no"; then
-+ if test -z "$with_projects"; then
- AC_MSG_ERROR([--with-internal: Cannot build INTERNAL projects: missing $reason])
- else
- AC_MSG_WARN([--with-internal: Cannot build all INTERNAL projects: missing $reason])
-@@ -6807,11 +6819,9 @@ if test "$with_flat_makefile" != "no"; then
- else
- cfm_flags='-remoteptb'
- fi
-- case "$with_projects" in
-- yes ) cfm_flags="$cfm_flags -p projects" ;;
-- no | '' ) ;;
-- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
-- esac
-+ if test -n "$with_projects"; then
-+ cfm_flags="$cfm_flags -p $with_projects"
-+ fi
- if test "$with_configure_dialog" = yes; then
- cfm_flags="$cfm_flags -cfg"
- fi
-@@ -6854,7 +6864,8 @@ lib)
- esac
-
- if test -n "$with_projects"; then
-- build_proj="To build selected projects: cd $builddir && make all_p"
-+ build_proj="To build selected projects (as listed in \"$with_projects\"):
-+ cd $builddir && make all_p"
- fi
-
- cat << EOCONF
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-disable_test_compress.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-disable_test_compress.patch
deleted file mode 100644
index d379806..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-disable_test_compress.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- src/util/test/Makefile.in.ori 2012-12-21 14:26:16.000000000 +0100
-+++ src/util/test/Makefile.in 2012-12-21 14:26:26.000000000 +0100
-@@ -4,10 +4,10 @@
- #################################
-
- APP_PROJ = test_utf8 test_rangemap test_resize_iter \
-- test_logrotate test_regexp test_compress test_checksum \
-+ test_logrotate test_regexp test_checksum \
- test_staticmap test_strsearch test_table test_tar \
- test_transmissionrw test_align \
-- test_cache_mt test_id_mux test_compress_mt test_thread_pool \
-+ test_cache_mt test_id_mux test_thread_pool \
- test_uttp test_line_reader test_queue_mt test_thread_pool_old \
- test_scheduler test_value_convert example_value_convert \
- formatguess_unit_test test_floating_point_comparison \
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch
deleted file mode 100644
index b3b5797..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-creaders-linking.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- src/objtools/alnmgr/demo/Makefile.alnmrg.app (revision 413271)
-+++ src/objtools/alnmgr/demo/Makefile.alnmrg.app (working copy)
-@@ -4,7 +4,7 @@
- APP = alnmrg
- SRC = alnmrg
- LIB = xalnmgr xobjread ncbi_xloader_blastdb seqdb xobjutil submit blastdb \
-- tables $(OBJMGR_LIBS)
-+ tables creaders $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-order-of-libs.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-order-of-libs.patch
deleted file mode 100644
index 84a544e..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-order-of-libs.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-Index: Makefile.test_compress.app
-===================================================================
---- src/util/test/Makefile.test_compress.app (revision 356584)
-+++ src/util/test/Makefile.test_compress.app (working copy)
-@@ -3,7 +3,7 @@
-
- APP = test_compress
- SRC = test_compress
--LIB = xutil xcompress $(CMPRS_LIB) xncbi
-+LIB = xcompress xutil $(CMPRS_LIB) xncbi
- LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
-
---- src/util/test/Makefile.test_compress_mt.app.ori 2012-12-21 16:12:11.000000000 +0100
-+++ src/util/test/Makefile.test_compress_mt.app 2012-12-21 16:12:41.000000000 +0100
-@@ -3,7 +3,7 @@
-
- APP = test_compress_mt
- SRC = test_compress_mt
--LIB = xutil xcompress $(CMPRS_LIB) test_mt xncbi
-+LIB = xcompress xutil $(CMPRS_LIB) test_mt xncbi
- LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
- CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch
deleted file mode 100644
index 8bba91f..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- scripts/common/new_project.sh (revision 408264)
-+++ scripts/common/new_project.sh (working copy)
-@@ -6,7 +6,7 @@
- svn_revision=`echo '$Revision$' | sed "s%\\$[R]evision: *\\([^$][^$]*\\) \\$.*%\\1%"`
- def_builddir="$NCBI/c++/Debug/build"
-
--repository_url='https://svn.ncbi.nlm.nih.gov/repos/toolkit'
-+repository_url='http://anonsvn.ncbi.nlm.nih.gov/repos/v1'
- tmp_app_checkout_dir='tmp_app_sample'
- stem='sample/app'
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
deleted file mode 100644
index be49625..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib 2013-09-13 21:58:59.420013862 +0200
-+++ src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib 2013-09-13 21:59:56.060014010 +0200
-@@ -10,6 +10,6 @@
- LIB_OR_DLL = both
-
- # Dependencies for shared library
--DLL_LIB = ncbi_xreader$(DLL)
-+DLL_LIB = ncbi_xreader$(DLL) $(GENBANK_LDEP)
-
- WATCHERS = vasilche
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch
deleted file mode 100644
index 95d3f74..0000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- src/connect/ncbi_gnutls.c 2013-09-14 09:49:41.260005353 +0200
-+++ src/connect/ncbi_gnutls.c 2013-09-14 09:49:46.950005368 +0200
-@@ -112,7 +112,6 @@
- 0
- };
- static const int kGnuTlsCompPrio[] = {
-- GNUTLS_COMP_LZO,
- GNUTLS_COMP_ZLIB,
- GNUTLS_COMP_NULL,
- 0
diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-biology/ncbi-tools++/metadata.xml
index 250e068..30500b6 100644
--- a/sci-biology/ncbi-tools++/metadata.xml
+++ b/sci-biology/ncbi-tools++/metadata.xml
@@ -16,9 +16,6 @@
<flag name="freetype">Undocumented USE</flag>
</use>
<use>
- <flag name="ftds">Undocumented USE</flag>
- </use>
- <use>
<flag name="mesa">Undocumented USE</flag>
</use>
<use>
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index 3c28096..450ec1f 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -4,7 +4,7 @@
EAPI=5
-inherit autotools eutils flag-o-matic multilib toolchain-funcs
+inherit eutils flag-o-matic multilib toolchain-funcs
MY_TAG="Jun_15_2010"
MY_Y="${MY_TAG/*_/}"
@@ -105,7 +105,6 @@ src_prepare() {
# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
-
# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
local PATCHES=(
"${FILESDIR}"/${P}-conf-opts.patch
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
deleted file mode 100644
index a618abb..0000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild
+++ /dev/null
@@ -1,329 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-inherit eutils flag-o-matic multilib toolchain-funcs
-
-MY_TAG="Jun_15_2010"
-MY_Y="${MY_TAG/*_/}"
-MY_PV="9_0_0"
-MY_P="ncbi_cxx--${MY_PV}"
-#ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz
-
-DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="
- ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
-# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
-
-# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
-# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE="
- debug static-libs static threads pch
- test wxwidgets odbc
- berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype gif
- glut gnutls hdf5 icu lzo jpeg mesa mysql muparser opengl pcre png python
- sablotron sqlite sqlite3 tiff xerces xalan xml xpm xslt X"
-#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-KEYWORDS=""
-
-# sys-libs/db should be compiled with USE=cxx
-DEPEND="
- berkdb? ( sys-libs/db:4.3[cxx] )
- boost? ( dev-libs/boost )
- curl? ( net-misc/curl )
- sqlite? ( dev-db/sqlite )
- sqlite3? ( dev-db/sqlite:3 )
- mysql? ( virtual/mysql )
- gnutls? ( net-libs/gnutls )
- fltk? ( x11-libs/fltk )
- opengl? ( virtual/opengl )
- mesa? ( media-libs/mesa[osmesa]
- media-libs/glew
- )
- glut? ( media-libs/freeglut )
- freetype? ( media-libs/freetype )
- fastcgi? ( www-apache/mod_fastcgi )
- python? ( dev-lang/python )
- cppunit? ( dev-util/cppunit )
- icu? ( dev-libs/icu )
- expat? ( dev-libs/expat )
- sablotron? ( app-text/sablotron )
- xml? ( dev-libs/libxml2 )
- xslt? ( dev-libs/libxslt )
- xerces? ( dev-libs/xerces-c )
- xalan? ( dev-libs/xalan-c )
- muparser? ( dev-cpp/muParser )
- hdf5? ( sci-libs/hdf5 )
- gif? ( media-libs/giflib )
- jpeg? ( virtual/jpeg )
- png? ( media-libs/libpng )
- tiff? ( media-libs/tiff )
- xpm? ( x11-libs/libXpm )
- lzo? ( dev-libs/lzo )
- app-arch/bzip2
- dev-libs/libpcre"
-# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
-# Intentionally omitted USE flags:
-# ftds? ( dev-db/freetds ) # useless, no real apps use it outside NCBI
-
-
-# seems muParser is required, also glew is required. configure exitss otherwise
-
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-# filter-ldflags -Wl,--as-needed
-# append-ldflags -Wl,--no-undefined
-# sed -i -e 's/-print-file-name=libstdc++.a//' \
-# -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
-# src/build-system/configure || die
-# epatch \
-# "${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
-# "${FILESDIR}"/curl-types.patch \
-# "${FILESDIR}"/malloc_initialize_upstream_fix.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.ac.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.patch \
-# "${FILESDIR}"/report_project_settings_configure.ac.patch \
-# "${FILESDIR}"/report_project_settings_configure.patch \
-# "${FILESDIR}"/make_install.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \
-# "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-libpng15.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
-
-# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
-
- local PATCHES=(
- "${FILESDIR}"/${P}-conf-opts.patch
- "${FILESDIR}"/${P}-as-needed.patch
- "${FILESDIR}"/${P}-fix-creaders-linking.patch
- "${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
- "${FILESDIR}"/${P}-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
- "${FILESDIR}"/${P}-remove-LZO-definition-upstream.patch
- )
- epatch ${PATCHES[@]}
-
- tc-export CXX CC
-
-# cd src/build-system || die
-# eaclocal -I.
-# eautoconf
-}
-
-src_configure() {
- local myconf=()
- #--without-optimization turn off optimization flags in non-debug mode
- #--with-profiling build profiled versions of libs and apps
- #--with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
- #--with-plugin-auto-load always enable the plugin manager by default
- #--with-bundles build bundles in addition to dylibs on Mac OS X
- #--with-bin-release build executables suitable for public release
- # no dll and such
- #--with-64 compile to 64-bit code
- #--with-universal build universal binaries on Mac OS X
- #--with-universal=CPUs build universal binaries targeting the given CPUs
- #--without-exe do not build executables
- #--with-relative-runpath=P specify an executable-relative DLL search path
- #--with-hard-runpath hard-code runtime path, ignoring LD_LIBRARY_PATH
- #--with-limited-linker don't attempt to build especially large projects
- #--with-extra-action= script to call after the configuration is complete
- #--with-autodep automatic generation of dependencies (GNU make)
- #--with-fake-root=DIR appear to have been built under DIR
- #--with-build-root-sfx=X add a user-specified suffix to the build dir name
- #--without-execopy do not copy built executables to the BIN area
- #--with-lib-rebuilds ensure that apps use up-to-date libraries
- #--with-lib-rebuilds=ask ask whether to update each app's libraries
- #--without-deactivation keep old copies of libraries that no longer build
- #--without-makefile-auto-update do not auto-update generated makefiles
- #--with-projects=FILE build projects listed in FILE by default
- #--without-flat-makefile do not generate an all-encompassing flat makefile
- #--with-configure-dialog allow interactive flat makefile project selection
- #--with-saved-settings=F load configuration settings from the file F
- #--with-check-tools=... use the specified tools for testing
- #--with-ncbi-public ensure compatibility for all in-house platforms
- #--with-sybase-local=DIR use local SYBASE install (DIR is optional)
- #--with-sybase-new use newer SYBASE install (12.5 rather than 12.0)
- #--without-sp do not use SP libraries
- #--without-orbacus do not use ORBacus CORBA libraries
- #--with-orbacus=DIR use ORBacus installation in DIR
- #--with-jni(=JDK-DIR) build Java bindings (against the JDK in JDK-DIR)
- #--with-sablot=DIR use Sablotron installation in DIR
- #--without-sablot, do not use Sablotron
- #--with-oechem=DIR use OpenEye OEChem installation in DIR
- #--without-oechem do not use OEChem
- #--with-sge=DIR use Sun Grid Engine installation in DIR
- #--without-sge do not use Sun Grid Engine
- #--with-magic=DIR use libmagic installation in DIR
- #--without-magic do not use libmagic
- #--without-local-lbsm turn off support for IPC with locally running LBSMD
- #--without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
- #--without-connext do not build non-public CONNECT library extensions
- #--without-serial do not build the serialization library and tools
- #--without-objects do not generate/build serializeable objects from ASNs
- #--without-dbapi do not build database connectivity libraries
- #--without-app do not build standalone applications like ID1_FETCH
- #--without-gui do not build most graphical projects
- #--without-algo do not build CPU-intensive algorithms
- #--without-internal do not build internal projects
- #--with-gbench ensure that Genome Workbench can be built
- #--without-gbench do not build Genome Workbench
- myconf+=(
- --with-dll
- --with-lfs
- --with-build-root="${S}"_build
- --without-suffix
- --without-hostspec
- --without-version
- --with-bincopy
- --without-strip
- --without-ccache
- --without-distcc
-# --with-ncbi-c
- --without-ctools
-# --with-sss
-# --with-sssutils
-# --with-sssdb
-# --with-included-sss
- --with-z="${EPREFIX}/usr"
- --with-bz2="${EPREFIX}/usr"
- --with-muparser="${EPREFIX}/usr"
- --without-sybase
- --with-autodep
-
-# due to \*-fix-undef-reference-to-GenBankReaders_Register_Id1.patch
-# ./configure ... --with-flat-makefile
-# cd .../build
-# make -f Makefile.flat
-#
- --with-flat-makefile
-# --with-3psw=std:netopt favor standard (system) builds of the above pkgs
-
-
-# Note: only care about gnutls, nothing actually uses openssl except a forgotten configure test
- $(use_with debug)
- $(use_with debug max-debug)
- $(use_with debug symbols)
- $(use_with static-libs static)
- $(use_with static static-exe)
- $(use_with threads mt)
- $(use_with prefix runpath "${EPREFIX}/usr/$(get_libdir)/ncbi_cxx")
- $(use_with test check)
- $(use_with pch)
- $(use_with lzo lzo "${EPREFIX}/usr")
- $(use_with pcre pcre "${EPREFIX}/usr")
- $(use_with gnutls gnutls "${EPREFIX}/usr")
- $(use_with mysql mysql "${EPREFIX}/usr")
- $(use_with fltk fltk "${EPREFIX}/usr")
- $(use_with opengl opengl "${EPREFIX}/usr")
- $(use_with mesa mesa "${EPREFIX}/usr")
- $(use_with opengl glut "${EPREFIX}/usr")
- $(use_with opengl glew "${EPREFIX}/usr")
- $(use_with opengl glew-mx)
- $(use_with wxwidgets wxwidgets "${EPREFIX}/usr")
- $(use_with wxwidgets wxwidgets-ucs)
- $(use_with freetype freetype "${EPREFIX}/usr")
- $(use_with fastcgi fastcgi "${EPREFIX}/usr")
- $(use_with berkdb bdb "${EPREFIX}/usr")
- $(use_with odbc odbc "${EPREFIX}/usr")
- $(use_with python python "${EPREFIX}/usr")
- $(use_with boost boost "${EPREFIX}/usr")
- $(use_with sqlite sqlite3 "${EPREFIX}/usr")
- $(use_with icu icu "${EPREFIX}/usr")
- $(use_with expat expat "${EPREFIX}/usr")
- $(use_with xml libxml "${EPREFIX}/usr")
- $(use_with xml libxslt "${EPREFIX}/usr")
- $(use_with xerces xerces "${EPREFIX}/usr")
- $(use_with hdf5 hdf5 "${EPREFIX}/usr")
- $(use_with xalan xalan "${EPREFIX}/usr")
-# $(use_with gif gif "${EPREFIX}/usr")
- $(use_with jpeg jpeg "${EPREFIX}/usr")
- $(use_with tiff tiff "${EPREFIX}/usr")
- $(use_with png png "${EPREFIX}/usr")
- $(use_with xpm xpm "${EPREFIX}/usr")
- $(use_with curl curl "${EPREFIX}/usr")
-# $(use_with X x "${EPREFIX}/usr")
- $(use_with X x)
- )
-
- # http://www.ncbi.nlm.nih.gov/books/NBK7167/
- use test || myconf+=( --with-projects="${FILESDIR}"/disable-testsuite-compilation.txt )
-
- # TODO
- # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
- # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9
-
- einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
-
-# bash \
-# ./src/build-system/configure \
-# cd src/build-system || die
- econf \
- --srcdir="${S}" \
- --prefix="${EPREFIX}/usr" \
- --libdir=/usr/lib64 \
- ${myconf} LDFLAGS="-Wl,-rpath-link,${S}_build/lib -Wl,--no-as-needed" \
- ${myconf[@]} || die
-#--without-debug \
-# --with-bin-release \
-# --with-bincopy \
-# --without-static \
-# --with-dll \
-# --with-mt \
-# --with-openmp \
-# --with-lfs \
-# --prefix="${ED}"/usr \
-# --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
-# ${myconf} LDFLAGS="-Wl,--no-as-needed" \
-# || die
-# econf ${myconf[@]}
-}
-
-src_compile() {
- # all_r would ignore the --with-projects contents and build more
- # emake all_r -C GCC*-Release*/build || die
- # all_p with compile only selected/required components
-# cd "${S}"_build &&\
-
- # disabling this because we need to take the flat Makefile route
- # emake all_p -C "${S}"_build/build
-
- # take the flat Makefile route
- emake -f Makefile.flat -C "${S}"_build/build
-
-
-# emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
-}
-
-src_install() {
- rm -rvf "${S}"_build/lib/ncbi || die
- emake install prefix="${ED}/usr" libdir="${ED}/usr/$(get_libdir)/${PN}"
-
-# dobin "${S}"_build/bin/*
-# dolib.so "${S}"_build/lib/*so*
-# dolib.a "${S}"_build/lib/*.a
-# doheader "${S}"_build/inc/*
-
- # File collisions with sci-biology/ncbi-tools
- rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
- mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop2
-
- echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
- doenvd "${S}/99${PN}"
-}
-
-pkg_postinst() {
- einfo 'Please run "source /etc/profile" before using this package in the current shell.'
- einfo 'Documentation is at http://www.ncbi.nlm.nih.gov/books/NBK7167/'
-}
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
deleted file mode 100644
index db91131..0000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild
+++ /dev/null
@@ -1,303 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="3"
-
-inherit eutils flag-o-matic multilib toolchain-funcs
-
-MY_TAG="Jun_15_2010"
-MY_Y="${MY_TAG/*_/}"
-MY_PV="9_0_0"
-MY_P="ncbi_cxx--${MY_PV}"
-#ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz
-
-DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="
- ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
-# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
-
-# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
-# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE="berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype gif glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 tiff xerces xalan xml xpm xslt X"
-#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-KEYWORDS=""
-
-# sys-libs/db should be compiled with USE=cxx
-DEPEND="berkdb? ( sys-libs/db:4.3 )
- boost? ( dev-libs/boost )
- curl? ( net-misc/curl )
- sqlite? ( dev-db/sqlite )
- sqlite3? ( dev-db/sqlite:3 )
- mysql? ( virtual/mysql )
- gnutls? ( net-libs/gnutls )
- fltk? ( x11-libs/fltk )
- opengl? ( virtual/opengl )
- mesa? ( media-libs/mesa[osmesa] )
- glut? ( media-libs/freeglut )
- freetype? ( media-libs/freetype )
- fastcgi? ( www-apache/mod_fastcgi )
- python? ( dev-lang/python )
- cppunit? ( dev-util/cppunit )
- icu? ( dev-libs/icu )
- expat? ( dev-libs/expat )
- sablotron? ( app-text/sablotron )
- xml? ( dev-libs/libxml2 )
- xslt? ( dev-libs/libxslt )
- xerces? ( dev-libs/xerces-c )
- xalan? ( dev-libs/xalan-c )
- muparser? ( dev-cpp/muParser )
- hdf5? ( sci-libs/hdf5 )
- gif? ( media-libs/giflib )
- jpeg? ( virtual/jpeg )
- png? ( media-libs/libpng )
- tiff? ( media-libs/tiff )
- xpm? ( x11-libs/libXpm )
- lzo? ( dev-libs/lzo )
- app-arch/bzip2
- dev-libs/libpcre"
-# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
-# Intentionally omitted USE flags:
-# ftds? ( dev-db/freetds ) # useless, no real apps use it outside NCBI
-
-# configure options, may want to expose some
-# --without-debug build non-debug versions of libs and apps
-# --without-optimization turn off optimization flags in non-debug mode
-# --with-profiling build profiled versions of libs and apps
-# --with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
-# --with-dll build all libraries as DLLs
-# --with-static build all libraries statically even if --with-dll
-# --with-static-exe build all executables as statically as possible
-# --with-plugin-auto-load always enable the plugin manager by default
-# --with-bin-release build executables suitable for public release
-# --with-mt compile in a MultiThread-safe manner
-# --with-64 compile to 64-bit code
-# --with-universal build universal binaries on Mac OS X
-# --with-universal=CPUs build universal binaries targeting the given CPUs
-# --without-exe do not build executables
-# --with-runpath= hard-code the runtime path to DLLs
-# --with-lfs enable large file support to the extent possible
-# --with-extra-action= script to call after the configuration is complete
-# --with-autodep automatic generation of dependencies (GNU make)
-# --with-build-root=DIR specify a non-default build directory name
-# --with-fake-root=DIR appear to have been built under DIR
-# --without-suffix no Release/Debug, MT or DLL sfx in the build dir name
-# --with-hostspec add full host specs to the build dir name
-# --without-version don't always include the cplr ver in the bd name
-# --with-build-root-sfx=X add a user-specified suffix to the build dir name
-# --without-execopy do not copy built executables to the BIN area
-# --with-bincopy populate lib and bin with copies, not hard links
-# --with-lib-rebuilds ensure that apps use up-to-date libraries
-# --with-lib-rebuilds=ask ask whether to update each app's libraries
-# --without-deactivation keep old copies of libraries that no longer build
-# --without-makefile-auto-update do not auto-update generated makefiles
-# --with-projects=FILE build projects listed in FILE by default
-# --without-flat-makefile do not generate an all-encompassing flat makefile
-# --with-configure-dialog allow interactive flat makefile project selection
-# --with-saved-settings=F load configuration settings from the file F
-# --with-check run test suite after the build
-# --with-check-tools=... use the specified tools for testing
-# --with-ncbi-public ensure compatibility for all in-house platforms
-# --with-strip strip binaries at build time
-# --with-pch use precompiled headers if possible
-# --with-caution cancel configuration unconditionally when in doubt
-# --without-caution proceed without asking when in doubt
-# --without-ccache do not automatically use ccache if available
-# --without-distcc do not automatically use distcc if available
-# --without-ncbi-c do not use NCBI C Toolkit
-# --without-sss do not use NCBI SSS libraries
-# --without-utils do not use NCBI SSS UTIL library
-# --without-sssdb do not use NCBI SSS DB library
-# --with-included-sss use the in-tree copy of SSS
-
-# --without-local-lbsm turn off support for IPC with locally running LBSMD
-# --without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
-# --without-connext do not build non-public CONNECT library extensions
-# --without-serial do not build the serialization library and tools
-# --without-objects do not generate/build serializeable objects from ASNs
-# --without-dbapi do not build database connectivity libraries
-# --without-app do not build standalone applications like ID1_FETCH
-# --without-ctools do not build NCBI C Toolkit based projects
-# --without-gui do not build most graphical projects
-# --without-algo do not build CPU-intensive algorithms
-# --without-internal do not build internal projects
-# --with-gbench ensure that Genome Workbench can be built
-# --without-gbench do not build Genome Workbench
-
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- filter-ldflags -Wl,--as-needed
-# append-ldflags -Wl,--no-undefined
- sed -i -e 's/-print-file-name=libstdc++.a//' \
- -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
- src/build-system/configure || die
- epatch \
- "${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
- "${FILESDIR}"/curl-types.patch \
- "${FILESDIR}"/malloc_initialize_upstream_fix.patch \
- "${FILESDIR}"/respect_CXXFLAGS_configure.ac.patch \
- "${FILESDIR}"/respect_CXXFLAGS_configure.patch \
- "${FILESDIR}"/report_project_settings_configure.ac.patch \
- "${FILESDIR}"/report_project_settings_configure.patch \
- "${FILESDIR}"/make_install.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \
-# "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-libpng15.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
-
- use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
-}
-
-src_configure() {
- tc-export CXX CC
- # the use flag test below are for those which allow to enable or disable the package usage (unlike those cases which either allow or not use of internal, built-in copy of some mostly library, e.g. zlib, boost)
-# conf check for sqlite and mysql
- local myconf=""
- if use berkdb; then
- myconf="--with-bdb"
- else
- myconf="--without-bdb"
- fi
- if ! use curl; then
- myconf="--without-curl"
- fi
- if use gnutls; then
- myconf="--with-gnutls"
- else
- myconf="--without-gnutls"
- fi
- if ! use sqlite; then
- myconf="--without-sqlite"
- fi
- if ! use sqlite3; then
- myconf="--without-sqlite3"
- fi
- if ! use mysql; then
- myconf="--without-mysql"
- fi
- if ! use fltk; then
- myconf="--without-fltk"
- fi
- if ! use opengl; then
- myconf="--without-opengl"
- fi
- if ! use mesa; then
- myconf="--without-mesa"
- fi
- if ! use glut; then
- myconf="--without-glut"
- fi
- if ! use freetype; then
- myconf="--without-freetype"
- fi
- if ! use fastcgi; then
- myconf="--without-fastcgi"
- fi
- if ! use python; then
- myconf="--without-python"
- fi
- if ! use cppunit; then
- myconf="--without-cppunit"
- fi
- if ! use icu; then
- myconf="--without-icu"
- fi
- if ! use expat; then
- myconf="--without-expat"
- fi
- if ! use sablotron; then
- myconf="--without-sablotron"
- fi
- if ! use xml; then
- myconf="--without-xml"
- fi
- if ! use xslt; then
- myconf="--without-xslt"
- fi
- if ! use xerces; then
- myconf="--without-xerces"
- fi
- if ! use xalan; then
- myconf="--without-xalan"
- fi
- if ! use muparser; then
- myconf="--without-muparser"
- fi
- if ! use hdf5; then
- myconf="--without-hdf5"
- fi
- if ! use gif; then
- myconf="--without-gif"
- fi
- if ! use jpeg; then
- myconf="--without-jpeg"
- fi
- if ! use png; then
- myconf="--without-png"
- fi
- if ! use tiff; then
- myconf="--without-tiff"
- fi
- if ! use xpm; then
- myconf="--without-xpm"
- fi
- if ! use X; then
- myconf="--without-gui --without-x"
- fi
-
- # http://www.ncbi.nlm.nih.gov/books/NBK7167/
- if ! use test; then
- myconf="--with-projects="${FILESDIR}"/disable-testsuite-compilation.txt"
- fi
-
- # TODO
- # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
- # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9
-
- "${S}"/configure --without-debug \
- --with-bin-release \
- --with-bincopy \
- --without-static \
- --with-dll \
- --with-mt \
- --with-lfs \
- --prefix="${ED}"/usr \
- --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
- ${myconf} LDFLAGS="-Wl,--no-as-needed" \
- || die
-
- # --with-openmp
-}
-
-src_compile() {
- # all_r would ignore the --with-projects contents and build more
- # emake all_r -C GCC*-Release*/build || die
- # all_p with compile only selected/required components
- emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
-}
-
-src_install() {
- emake install || die
- # File collisions with sci-biology/ncbi-tools
- rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}
- mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop2
-
- echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
- doenvd "${S}/99${PN}"
-}
-
-pkg_postinst() {
- einfo 'Please run "source /etc/profile" before using this package in the current shell.'
- einfo 'Documentation is at http://www.ncbi.nlm.nih.gov/books/NBK7167/'
-}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2016-12-02 23:28 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2016-12-02 23:28 UTC (permalink / raw
To: gentoo-commits
commit: ef30e8a1e8ba6e56b365f8dbaddd1b4812306392
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Dec 2 23:27:56 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Dec 2 23:27:56 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef30e8a1
sci-biology/ncbi-tools++: fix bug #579248#c by disabling more tests
This will likely also fix the #579248 bug in rmblast (untested).
Our $FILESDIR/disable-testsuite-compilation.txt only excludes test
applications from usingboost, not the support library. Hence the above
bug.
We could either add --without-boost to the configuration command line
to disable the bosost-related code in support library or, which is the
path we take in this commit, we disable building of the yet escaping
unit_tests which needed boost.
Upstream further said:
The C++ Toolkit makes very little use of Boost outside of unit tests,
but that's a fair question. The simplest fix preserving other uses of
Boost would be to edit .../src/corelib/Makefile.in and remove test_boost
from LIB_PROJ. (You'll still also need to exclude building the tests by
adding '-.*/unit_tests' to the $FILESDIR/disable-testsuite-compilation.txt
file.)
Package-Manager: portage-2.3.2
.../ncbi-tools++/files/disable-testsuite-compilation.txt | 1 +
.../files/ncbi-tools++-12.0.0-never_build_test_boost.patch | 11 +++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 1 +
3 files changed, 13 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt b/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
index aeaf75e..8df346f 100644
--- a/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
+++ b/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
@@ -1,3 +1,4 @@
.*
-.*/test
-.*/unit_test
+-.*/unit_tests
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-never_build_test_boost.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-never_build_test_boost.patch
new file mode 100644
index 0000000..68baea0
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-never_build_test_boost.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--12_0_0/src/corelib/Makefile.in.ori 2016-12-01 20:28:33.239758102 +0100
++++ ncbi_cxx--12_0_0/src/corelib/Makefile.in 2016-12-01 20:28:46.330110659 +0100
+@@ -7,7 +7,7 @@
+ #################################
+
+ USR_PROJ = precompile
+-LIB_PROJ = corelib test_mt test_boost
++LIB_PROJ = corelib test_mt
+ SUB_PROJ = test
+ PROJ_TAG = core
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
index c9f6911..1236c13 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
@@ -120,6 +120,7 @@ src_prepare() {
"${FILESDIR}"/${P}-drop-STATIC-from-LIB.patch
"${FILESDIR}"/${P}-fix-install.patch
"${FILESDIR}"/${P}-bdb6.patch
+ "${FILESDIR}"/${P}-never_build_test_boost.patch # bug #579248
)
# "${FILESDIR}"/${P}-as-needed.patch
# "${FILESDIR}"/${P}-fix-creaders-linking.patch
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2017-03-22 22:36 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2017-03-22 22:36 UTC (permalink / raw
To: gentoo-commits
commit: 505486cbc011b906cb37e3af2376dc4deeba06d6
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Mar 22 22:35:40 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Mar 22 22:35:40 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=505486cb
sci-biology/ncbi-tools++: fix plenty linking issues, still far from completeness
Package-Manager: Portage-2.3.3, Repoman-2.3.1
...bi-tools++-18.0.0-fix-annotwriter-linking.patch | 15 ++
...cbi-tools++-18.0.0-fix-apps-blast-linking.patch | 205 +++++++++++++++++++++
.../ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch | 10 +
...cbi-tools++-18.0.0-fix-undefined-xobjread.patch | 11 ++
.../ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 4 +
5 files changed, 245 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-annotwriter-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-annotwriter-linking.patch
new file mode 100644
index 000000000..3f1379223
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-annotwriter-linking.patch
@@ -0,0 +1,15 @@
+--- ncbi_cxx--18_0_0/src/app/annotwriter/Makefile.annotwriter.app.ori 2017-03-20 18:13:08.087145846 +0100
++++ ncbi_cxx--18_0_0/src/app/annotwriter/Makefile.annotwriter.app 2017-03-20 18:14:10.988888851 +0100
+@@ -8,8 +8,8 @@
+
+ APP = annotwriter
+ SRC = annotwriter
+-LIB = xobjwrite variation_utils $(OBJREAD_LIBS) xalnmgr xobjutil \
+- gbseq entrez2cli entrez2 tables $(OBJMGR_LIBS)
++LIB = xobjwrite $(XFORMAT_LIBS) variation_utils $(OBJREAD_LIBS) xalnmgr \
++ xobjutil entrez2cli entrez2 tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+
+-LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch
new file mode 100644
index 000000000..43104976e
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch
@@ -0,0 +1,205 @@
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.blast_formatter.app.ori 2017-03-22 17:21:05.653409646 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.blast_formatter.app 2017-03-22 17:22:25.755581547 +0100
+@@ -2,7 +2,7 @@
+
+ APP = blast_formatter
+ SRC = blast_formatter
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -11,6 +11,6 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLASTFORMAT $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.blastn.app.ori 2017-03-22 19:57:18.063352028 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.blastn.app 2017-03-22 19:58:28.925273217 +0100
+@@ -14,7 +14,7 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.blastp.app.ori 2017-03-22 19:57:18.063352028 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.blastp.app 2017-03-22 19:58:54.365962959 +0100
+@@ -4,7 +4,7 @@
+
+ APP = blastp
+ SRC = blastp_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -13,7 +13,7 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.blastx.app.ori 2017-03-22 19:57:18.063352028 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.blastx.app 2017-03-22 19:59:11.066415737 +0100
+@@ -4,7 +4,7 @@
+
+ APP = blastx
+ SRC = blastx_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -13,7 +13,7 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.deltablast.app.ori 2017-03-22 19:57:18.063352028 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.deltablast.app 2017-03-22 19:59:30.396939821 +0100
+@@ -1,7 +1,7 @@
+
+ APP = deltablast
+ SRC = deltablast_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -10,6 +10,6 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.psiblast.app.ori 2017-03-22 19:57:18.063352028 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.psiblast.app 2017-03-22 19:59:51.837521114 +0100
+@@ -2,7 +2,7 @@
+
+ APP = psiblast
+ SRC = psiblast_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -11,6 +11,6 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.rpsblast.app.ori 2017-03-22 19:57:18.063352028 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.rpsblast.app 2017-03-22 20:00:15.808170999 +0100
+@@ -2,7 +2,7 @@
+
+ APP = rpsblast
+ SRC = rpsblast_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -11,6 +11,6 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.rpstblastn.app.ori 2017-03-22 19:57:18.063352028 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.rpstblastn.app 2017-03-22 20:00:34.328673121 +0100
+@@ -2,7 +2,7 @@
+
+ APP = rpstblastn
+ SRC = rpstblastn_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -11,6 +11,6 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.seedtop.app.ori 2017-03-22 19:57:18.073352297 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.seedtop.app 2017-03-22 20:00:52.309160604 +0100
+@@ -2,7 +2,7 @@
+
+ APP = seedtop
+ SRC = seedtop_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -11,6 +11,6 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.tblastn.app.ori 2017-03-22 19:57:18.073352297 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.tblastn.app 2017-03-22 20:01:09.669631276 +0100
+@@ -4,7 +4,7 @@
+
+ APP = tblastn
+ SRC = tblastn_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -13,7 +13,7 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+
+--- ncbi_cxx--18_0_0/src/app/blast/Makefile.tblastx.app.ori 2017-03-22 19:57:18.073352297 +0100
++++ ncbi_cxx--18_0_0/src/app/blast/Makefile.tblastx.app 2017-03-22 20:01:23.860016002 +0100
+@@ -4,7 +4,7 @@
+
+ APP = tblastx
+ SRC = tblastx_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -13,7 +13,7 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = -DNCBI_MODULE=BLAST $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
new file mode 100644
index 000000000..f0a27d85a
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
@@ -0,0 +1,10 @@
+--- work/ncbi_cxx--18_0_0/src/connect/Makefile.xthrserv.lib.ori 2017-03-17 22:33:51.569635396 +0100
++++ ncbi_cxx--18_0_0/src/connect/Makefile.xthrserv.lib 2017-03-17 22:33:58.349811199 +0100
+@@ -4,6 +4,6 @@
+ LIB = xthrserv
+ PROJ_TAG = core
+ LIBS = $(NETWORK_LIBS)
+-DLL_LIB = xutil xconnect
++DLL_LIB = xncbi xutil xconnect
+
+ WATCHERS = vakatov
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-xobjread.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-xobjread.patch
new file mode 100644
index 000000000..3c1cb0a9e
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-xobjread.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/asn2fasta/Makefile.asn2fasta.app.ori 2016-06-24 16:55:25.000000000 +0200
++++ ncbi_cxx--18_0_0/src/app/asn2fasta/Makefile.asn2fasta.app 2017-03-21 14:07:31.070364301 +0100
+@@ -9,7 +9,7 @@
+ APP = asn2fasta
+ SRC = asn2fasta
+ LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) \
+- xobjwrite xobjread $(XFORMAT_LIBS) xalnmgr xobjutil valerr xregexp \
++ xobjwrite variation_utils $(OBJREAD_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil valerr xregexp \
+ ncbi_xdbapi_ftds dbapi $(ncbi_xreader_pubseqos2) $(FTDS_LIB) \
+ entrez2cli entrez2 tables $(OBJMGR_LIBS) $(PCRE_LIB)
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 72f3ad016..761058824 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -113,7 +113,11 @@ src_prepare() {
"${FILESDIR}"/${P}-configure.patch
"${FILESDIR}"/${P}-fix-install.patch
"${FILESDIR}"/${P}-never_build_test_boost.patch # bug #579248
+ "${FILESDIR}"/${P}-fix-annotwriter-linking.patch
+ "${FILESDIR}"/${P}-fix-undefined-xobjread.patch
+ "${FILESDIR}"/${P}-fix-apps-blast-linking.patch
)
+ #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
# make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60
# https://bugs.gentoo.org/show_bug.cgi?id=514706
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2017-03-23 17:17 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2017-03-23 17:17 UTC (permalink / raw
To: gentoo-commits
commit: 69763b2b7798dac7b061b881c2b76e6ec7fa005b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 23 17:17:40 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 23 17:17:40 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=69763b2b
sci-biology/ncbi-tools++: more patches
Package-Manager: Portage-2.3.3, Repoman-2.3.1
...i-tools++-18.0.0-fix-app-compartp-linking.patch | 31 ++++++++++++++++++++++
...tools++-18.0.0-fix-sample-app-cgi-linking.patch | 11 ++++++++
.../ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 2 ++
3 files changed, 44 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-compartp-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-compartp-linking.patch
new file mode 100644
index 000000000..0b4b76e4f
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-compartp-linking.patch
@@ -0,0 +1,31 @@
+--- ncbi_cxx--18_0_0/src/app/compart/Makefile.compart.app.ori 2017-03-23 14:49:24.915182566 +0100
++++ ncbi_cxx--18_0_0/src/app/compart/Makefile.compart.app 2017-03-23 14:50:32.926896138 +0100
+@@ -5,11 +5,11 @@
+ APP = compart
+ SRC = compart
+
+-LIB = xalgoalignsplign xalgoalignutil xalgoalignnw xqueryparse \
+- $(BLAST_LIBS:%=%$(STATIC)) \
++LIB = xalgoalignsplign xalgoalignutil xalgoalignnw xalgoseq taxon1 xqueryparse \
++ $(BLAST_LIBS:%=%$(STATIC)) xregexp $(REGEXP_LIB) \
+ $(OBJMGR_LIBS:%=%$(STATIC))
+
+-LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(REGEXP_LIBS) $(ORIG_LIBS)
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
+--- ncbi_cxx--18_0_0/src/app/compart/Makefile.compartp.app.ori 2017-03-23 18:05:44.135172346 +0100
++++ ncbi_cxx--18_0_0/src/app/compart/Makefile.compartp.app 2017-03-23 18:09:00.990132154 +0100
+@@ -5,9 +5,9 @@
+ APP = compartp
+ SRC = compartp
+
+-LIB = prosplign xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
++LIB = prosplign xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) xqueryparse xregexp $(REGEXP_LIB) $(OBJMGR_LIBS)
+
+-LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(REGEXP_LIBS) $(ORIG_LIBS)
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-sample-app-cgi-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-sample-app-cgi-linking.patch
new file mode 100644
index 000000000..c45d4ad96
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-sample-app-cgi-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app.ori 2017-03-22 23:52:58.984696074 +0100
++++ ncbi_cxx--18_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app 2017-03-22 23:53:54.746258126 +0100
+@@ -11,7 +11,7 @@
+ # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
+
+ ### BEGIN COPIED SETTINGS
+-LIB = xgridcgi xcgi xhtml xconnserv xconnect xutil xncbi
++LIB = xgridcgi xcgi xhtml xconnserv xthrserv xconnect xutil xncbi
+
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 761058824..7a70e8f5e 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -116,6 +116,8 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-annotwriter-linking.patch
"${FILESDIR}"/${P}-fix-undefined-xobjread.patch
"${FILESDIR}"/${P}-fix-apps-blast-linking.patch
+ "${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch
+ "${FILESDIR}"/${P}-fix-app-compartp-linking.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2017-03-23 18:28 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2017-03-23 18:28 UTC (permalink / raw
To: gentoo-commits
commit: 0ece3b3803a4d4be8aeeb140f51b3b46dee6ee6f
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 23 18:28:08 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 23 18:28:08 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ece3b38
sci-biology/ncbi-tools++: yet another linking fix
Package-Manager: Portage-2.3.3, Repoman-2.3.1
.../ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch | 11 +++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 1 +
2 files changed, 12 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
new file mode 100644
index 000000000..e495c9645
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app.ori 2017-03-23 19:24:31.534280319 +0100
++++ ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app 2017-03-23 19:25:14.395360214 +0100
+@@ -2,7 +2,7 @@
+
+ APP = convert_seq
+ SRC = convert_seq
+-LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite \
++LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite variation_utils \
+ $(OBJREAD_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil tables xregexp \
+ $(PCRE_LIB) $(OBJMGR_LIBS)
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 7a70e8f5e..ce5b4ddb8 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -118,6 +118,7 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-apps-blast-linking.patch
"${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch
"${FILESDIR}"/${P}-fix-app-compartp-linking.patch
+ "${FILESDIR}"/${P}-fix-app-convert_seq-linking.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2017-03-23 21:28 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2017-03-23 21:28 UTC (permalink / raw
To: gentoo-commits
commit: 77145c77d44bccc7054c1395e0ce21213746f290
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 23 21:28:40 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 23 21:28:40 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=77145c77
sci-biology/ncbi-tools++: continuing with linking patches
Package-Manager: Portage-2.3.3, Repoman-2.3.1
...bi-tools++-18.0.0-fix-app-hfilter-linking.patch | 15 ++++++++
...bi-tools++-18.0.0-fix-app-igblast-linking.patch | 42 ++++++++++++++++++++++
.../ncbi-tools++-18.0.0-fix-ncfetch-linking.patch | 11 ++++++
...++-18.0.0-fix-netcache_cgi_sample-linking.patch | 11 ++++++
...-tools++-18.0.0-fix-netstorage_gc-linking.patch | 11 ++++++
...ncbi-tools++-18.0.0-fix-speedtest-linking.patch | 11 ++++++
.../ncbi-tools++-18.0.0-fix-splign-linking.patch | 11 ++++++
.../ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 7 ++++
8 files changed, 119 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-hfilter-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-hfilter-linking.patch
new file mode 100644
index 000000000..77b1ba05e
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-hfilter-linking.patch
@@ -0,0 +1,15 @@
+--- ncbi_cxx--18_0_0/src/app/hfilter/Makefile.hfilter.app.ori 2017-03-23 19:47:10.204018194 +0100
++++ ncbi_cxx--18_0_0/src/app/hfilter/Makefile.hfilter.app 2017-03-23 19:51:51.601108063 +0100
+@@ -5,9 +5,10 @@
+ APP = hfilter
+ SRC = hitfilter_app
+
+-LIB = xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
++LIB = xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) \
++ xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+
+-LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ CXXFLAGS = $(FAST_CXXFLAGS)
+ LDFLAGS = $(FAST_LDFLAGS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-igblast-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-igblast-linking.patch
new file mode 100644
index 000000000..8610c7fd3
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-igblast-linking.patch
@@ -0,0 +1,42 @@
+--- ncbi_cxx--18_0_0/src/app/igblast/Makefile.igblastn.app.ori 2017-03-23 20:30:35.667921836 +0100
++++ ncbi_cxx--18_0_0/src/app/igblast/Makefile.igblastn.app 2017-03-23 20:32:04.553561820 +0100
+@@ -2,7 +2,8 @@
+
+ APP = igblastn
+ SRC = igblastn_app
+-LIB_ = xalgoalignutil $(BLAST_INPUT_LIBS) xqueryparse $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = xalgoalignutil $(BLAST_INPUT_LIBS) xqueryparse $(BLAST_LIBS) \
++ xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util igblast $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -10,7 +11,7 @@
+ CXXFLAGS = $(FAST_CXXFLAGS:ppc=i386)
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+
+--- ncbi_cxx--18_0_0/src/app/igblast/Makefile.igblastp.app.ori 2017-03-23 20:33:03.215124531 +0100
++++ ncbi_cxx--18_0_0/src/app/igblast/Makefile.igblastp.app 2017-03-23 20:34:22.817243181 +0100
+@@ -2,7 +2,8 @@
+
+ APP = igblastp
+ SRC = igblastp_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = xalgoalignutil $(BLAST_INPUT_LIBS) xqueryparse $(BLAST_LIBS) \
++ xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util igblast $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
+@@ -10,7 +11,7 @@
+ CXXFLAGS = $(FAST_CXXFLAGS:ppc=i386)
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-ncfetch-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-ncfetch-linking.patch
new file mode 100644
index 000000000..aacb20a6c
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-ncfetch-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/grid/util/Makefile.ncfetch.app.ori 2017-03-23 21:12:52.028724998 +0100
++++ ncbi_cxx--18_0_0/src/app/grid/util/Makefile.ncfetch.app 2017-03-23 21:13:30.079737366 +0100
+@@ -5,7 +5,7 @@
+ APP = ncfetch.cgi
+ SRC = ncfetch
+
+-LIB = xcgi xconnserv xconnect xutil xncbi
++LIB = xcgi xconnserv xthrserv xconnect xutil xncbi
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
+ WATCHERS = sadyrovr
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netcache_cgi_sample-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netcache_cgi_sample-linking.patch
new file mode 100644
index 000000000..e074046cf
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netcache_cgi_sample-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app.ori 2017-03-23 21:16:18.824226906 +0100
++++ ncbi_cxx--18_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app 2017-03-23 21:16:50.085058615 +0100
+@@ -4,7 +4,7 @@
+ SRC = netcache_cgi_sample
+
+ ### BEGIN COPIED SETTINGS
+-LIB = xconnserv xconnect xcgi xhtml xutil xncbi
++LIB = xconnserv xthrserv xconnect xcgi xhtml xutil xncbi
+
+ LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+ ### END COPIED SETTINGS
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netstorage_gc-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netstorage_gc-linking.patch
new file mode 100644
index 000000000..f237a86d8
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netstorage_gc-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/netstorage/utils/Makefile.netstorage_gc.app.ori 2017-03-23 21:22:14.463688886 +0100
++++ ncbi_cxx--18_0_0/src/app/netstorage/utils/Makefile.netstorage_gc.app 2017-03-23 21:22:48.854603873 +0100
+@@ -10,7 +10,7 @@
+ REQUIRES = MT Linux
+
+
+-LIB = netstorage ncbi_xcache_netcache xconnserv \
++LIB = netstorage ncbi_xcache_netcache xconnserv xthrserv \
+ $(SDBAPI_LIB) xconnect connssl xutil xncbi
+ LIBS = $(SDBAPI_LIBS) $(NETWORK_LIBS) $(GNUTLS_LIBS) $(CMPRS_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-speedtest-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-speedtest-linking.patch
new file mode 100644
index 000000000..9435e8b6a
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-speedtest-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/speedtest/Makefile.speedtest.app.ori 2017-03-23 21:41:31.084603405 +0100
++++ ncbi_cxx--18_0_0/src/app/speedtest/Makefile.speedtest.app 2017-03-23 21:45:47.601428174 +0100
+@@ -8,7 +8,7 @@
+
+ APP = speedtest
+ SRC = speedtest
+-LIB = prosplign xalgoalignutil xcleanup taxon3 valid valerr $(BLAST_LIBS) \
++LIB = prosplign xalgoalignutil taxon1 xalgoseq xcleanup taxon3 valid valerr $(BLAST_LIBS) \
+ xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS:%=%$(STATIC))
+
+ LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-splign-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-splign-linking.patch
new file mode 100644
index 000000000..56f213f08
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-splign-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/splign/Makefile.splign.app.ori 2017-03-23 22:08:16.937327984 +0100
++++ ncbi_cxx--18_0_0/src/app/splign/Makefile.splign.app 2017-03-23 22:09:19.208984755 +0100
+@@ -12,7 +12,7 @@
+ LIB = xalgoalignsplign xalgoalignutil xalgoalignnw \
+ $(BLAST_DB_DATA_LOADER_LIBS) \
+ ncbi_xloader_lds2 lds2 sqlitewrapp \
+- xqueryparse xalgoseq $(PCRE_LIB) \
++ xqueryparse xalgoseq taxon1 xregexp $(PCRE_LIB) \
+ $(BLAST_LIBS:%=%$(STATIC)) \
+ $(OBJMGR_LIBS:%=%$(STATIC))
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index ce5b4ddb8..3f3f4efc6 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -119,6 +119,13 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch
"${FILESDIR}"/${P}-fix-app-compartp-linking.patch
"${FILESDIR}"/${P}-fix-app-convert_seq-linking.patch
+ "${FILESDIR}"/${P}-fix-app-hfilter-linking.patch
+ "${FILESDIR}"/${P}-fix-app-igblast-linking.patch
+ "${FILESDIR}"/${P}-fix-ncfetch-linking.patch
+ "${FILESDIR}"/${P}-fix-netcache_cgi_sample-linking.patch
+ "${FILESDIR}"/${P}-fix-netstorage_gc-linking.patch
+ "${FILESDIR}"/${P}-fix-speedtest-linking.patch
+ "${FILESDIR}"/${P}-fix-splign-linking.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2017-03-26 20:37 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2017-03-26 20:37 UTC (permalink / raw
To: gentoo-commits
commit: 74d160e9dc55ef771da05ac064bfbe3f2ccd2cfb
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 26 20:37:15 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 26 20:37:15 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=74d160e9
sci-biology/ncbi-tools++: more fixes
Package-Manager: Portage-2.3.3, Repoman-2.3.1
.../files/ncbi-tools++-18.0.0-fix-app-rmblastn-linking.patch | 11 +++++++++++
.../files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch | 7 +++++--
.../files/ncbi-tools++-18.0.0-remove-old-symlinks.patch | 10 ++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 2 ++
4 files changed, 28 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-rmblastn-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-rmblastn-linking.patch
new file mode 100644
index 000000000..fce7263b2
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-rmblastn-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/rmblastn/Makefile.rmblastn.app.ori 2017-03-26 18:49:50.431994978 +0200
++++ ncbi_cxx--18_0_0/src/app/rmblastn/Makefile.rmblastn.app 2017-03-26 18:50:11.222552131 +0200
+@@ -2,7 +2,7 @@
+
+ APP = rmblastn
+ SRC = rmblastn_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = blast_app_util $(LIB_:%=%$(STATIC))
+
+ # De-universalize Mac builds to work around a PPC toolchain limitation
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
index 0724fa2cf..2568662f5 100644
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
@@ -7,7 +7,10 @@
-LIB = xobjwrite variation_utils $(OBJREAD_LIBS) xalnmgr xobjutil \
- gbseq entrez2cli entrez2 tables $(OBJMGR_LIBS)
+LIB = xobjwrite $(XFORMAT_LIBS) variation_utils $(OBJREAD_LIBS) xalnmgr \
-+ xobjutil entrez2cli entrez2 tables $(OBJMGR_LIBS)
++ xobjutil entrez2cli entrez2 tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+-LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-remove-old-symlinks.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-remove-old-symlinks.patch
new file mode 100644
index 000000000..098a9ad1e
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-remove-old-symlinks.patch
@@ -0,0 +1,10 @@
+--- ncbi_cxx--18_0_0/src/dbapi/lang_bind/python/tests/Makefile.symlink.in.old 2017-03-26 19:01:58.101495278 +0200
++++ ncbi_cxx--18_0_0/src/dbapi/lang_bind/python/tests/Makefile.symlink.in 2017-03-26 19:02:16.581990522 +0200
+@@ -13,6 +13,7 @@
+ -a ! -d $(libdir)/64 ]; then \
+ cd $(libdir) && $(LN_S) . 64; \
+ fi
++ $(RM) $(LINK)
+ cd $(libdir) && $(LN_S) libpython_ncbi_dbapi$(loadable_ext) $(LINK)
+
+ clean:;
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index f3bf993b0..02426ab42 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -127,6 +127,8 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-speedtest-linking.patch
"${FILESDIR}"/${P}-fix-splign-linking.patch
"${FILESDIR}"/${P}-fix-srcchk-linking.patch
+ "${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch
+ "${FILESDIR}"/${P}-remove-old-symlinks.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2017-03-26 22:48 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2017-03-26 22:48 UTC (permalink / raw
To: gentoo-commits
commit: b0f5d1f1974db03f189da3df7aa6d64532f4949d
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 26 22:48:16 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 26 22:48:16 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0f5d1f1
sci-biology/ncbi-tools++: fix table2asn linking
Package-Manager: Portage-2.3.5, Repoman-2.3.1
.../ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch | 13 +++++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 1 +
2 files changed, 14 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch
new file mode 100644
index 000000000..222cb2c06
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch
@@ -0,0 +1,13 @@
+--- ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app.ori 2017-03-27 00:41:58.742206850 +0200
++++ ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app 2017-03-27 00:43:13.142206236 +0200
+@@ -12,8 +12,8 @@
+
+ LIB = xdiscrepancy xalgophytree fastme prosplign xalgoalignutil xalgoseq xmlwrapp \
+ xvalidate xobjwrite xobjreadex valerr biotree macro \
+- $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) id2cli \
+- xregexp $(PCRE_LIB) $(SRAREAD_LIBS) $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS)
++ $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) taxon1 id2cli \
++ xregexp $(PCRE_LIB) xqueryparse $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS)
+
+ LIBS = $(LIBXSLT_LIBS) $(DATA_LOADERS_UTIL_LIBS) $(LIBXML_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) \
+ $(SRA_SDK_SYSLIBS) \
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 02426ab42..40db6cfa3 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -129,6 +129,7 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-srcchk-linking.patch
"${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch
"${FILESDIR}"/${P}-remove-old-symlinks.patch
+ "${FILESDIR}"/${P}-fix-app-table2asn-linking.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2017-03-27 0:44 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2017-03-27 0:44 UTC (permalink / raw
To: gentoo-commits
commit: 339162f1f266f025acebcffc1225961c3a50a24b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 27 00:44:01 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 27 00:44:01 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=339162f1
sci-biology/ncbi-tools++: and more
Package-Manager: Portage-2.3.5, Repoman-2.3.1
.../ncbi-tools++-18.0.0-fix-app-tls-linking.patch | 11 +++++++++++
...cbi-tools++-18.0.0-fix-app-vecscreen-linking.patch | 19 +++++++++++++++++++
sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 2 ++
3 files changed, 32 insertions(+)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-tls-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-tls-linking.patch
new file mode 100644
index 000000000..541dc2514
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-tls-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/tls/Makefile.tls.app.ori 2017-03-27 02:33:36.312151540 +0200
++++ ncbi_cxx--18_0_0/src/app/tls/Makefile.tls.app 2017-03-27 02:34:19.372151184 +0200
+@@ -10,7 +10,7 @@
+ SRC = tls
+
+ LIB = $(OBJEDIT_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil \
+- xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
++ xregexp $(PCRE_LIB) tables $(OBJMGR_LIBS)
+
+ LIBS = $(PCRE_LIBS) \
+ $(NETWORK_LIBS) $(CMPRS_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-vecscreen-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-vecscreen-linking.patch
new file mode 100644
index 000000000..9f33392d3
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-vecscreen-linking.patch
@@ -0,0 +1,19 @@
+--- ncbi_cxx--18_0_0/src/app/vecscreen/Makefile.vecscreen.app.ori 2017-03-27 02:34:44.242150979 +0200
++++ ncbi_cxx--18_0_0/src/app/vecscreen/Makefile.vecscreen.app 2017-03-27 02:36:22.752150165 +0200
+@@ -4,7 +4,7 @@
+
+ APP = vecscreen
+ SRC = vecscreen_app
+-LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
++LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
+ LIB = $(LIB_:%=%$(STATIC))
+ # FIXME: do we need blast_app_util
+ #LIB = blast_app_util $(LIB_:%=%$(STATIC))
+@@ -15,6 +15,6 @@
+ LDFLAGS = $(FAST_LDFLAGS:ppc=i386)
+
+ CPPFLAGS = $(ORIG_CPPFLAGS)
+-LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
+
+ REQUIRES = objects -Cygwin
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 40db6cfa3..5d0547875 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -130,6 +130,8 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch
"${FILESDIR}"/${P}-remove-old-symlinks.patch
"${FILESDIR}"/${P}-fix-app-table2asn-linking.patch
+ "${FILESDIR}"/${P}-fix-app-tls-linking.patch
+ "${FILESDIR}"/${P}-fix-app-vecscreen-linking.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2019-04-05 15:27 Martin Mokrejs
0 siblings, 0 replies; 30+ messages in thread
From: Martin Mokrejs @ 2019-04-05 15:27 UTC (permalink / raw
To: gentoo-commits
commit: 903f1a13a0c2953d5f556ccdd996d72120188c56
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr 5 15:24:06 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr 5 15:26:16 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=903f1a13
sci-biology/ncbi-tools++: set -rpath-link to temp build location
Add more regexps specifying which parts of the test suite should
not be compiled at all.
We have so far problems with say ncbi-tools++-18.0.0 libs installed
in ${EPREFIX}/usr/lib64/ncbi-tools++/ which get picked during linking
of a currently emerged package, like ncbi-tools++-22.0.0. That happens
due to LDPATH being set through
```
echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
doenvd "${S}/99${PN}"
```
which results in
```
$ cat /etc/env.d/99ncbi-tools++
LDPATH=/usr/lib64/ncbi-tools++
$
```
and later used during linking of a future version. Some symbols will be
resolved by ${EPREFIX}/usr/lib64/ncbi-tools++/ from older version,
some probably not. It is confusing to debug the errors popping up
during compilation/linking.
Aaron Ucko from NCBI proposed:
To avoid interference from old installations, please try passing
`LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib` to configure, no patches
(likely) needed.
@kiwifb François Bissey commented with:
<quote>
LDPATH is used to generate the ld.so.conf.d files. So it is important
to have it to be able to find the libraries that are not in a standard
path. LDPATH is a Gentoo special. You need to regenerate the cache with
ldconfig after installing such a library and such a path.
...
$ /usr/bin/x86_64-pc-linux-gnu-g++ -std=gnu++11 -Wl,--verbose
-Wl,-rpath,/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0
-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -Wl,-O1
-Wl,--as-needed -g speedtest.o
-L/scratch/var/tmp/portage/sci-biology/ncbi-tools++-22.0.0/work/\
ncbi_cxx--22_0_0_build/lib
-lprosplign -lxalgoalignutil -ltaxon1 -lxalgoseq -lxcleanup
-lxobjedit -ltaxon3 -lvalid -lvalerr -lproteinkmer -lxblast
-lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask
-lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr
-lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli
-lxnetblast -lblastdb -lscoremat -ltables -lxqueryparse -lxregexp
-lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2
-lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect
-lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit
-lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline
-lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2
-llzo2 -lz -lnsl -ldl -lpcre -llmdb -lpthread -ldw -ldl -lm
-lpthread -o speedtest
It cannot find libmlacli.so. Note that there isn’t a `-lmlacli`
anywhere in the above line. It is searched for because you are
compiling an executable and executable cannot have unresolved
symbols. It must in the table of needed libraries for libxobjedit.so
libmlacli.so needed by /scratch/var/tmp/portage/sci-biology/\
ncbi-tools++-22.0.0/work/ncbi_cxx--22_0_0_build/lib/libxobjedit.so
Because there is no path or possibly a final path in libxobjedit.so
that library cannot be found.
Two solutions here:
1) add -lmlacli in the compilation line above
2) Precede the whole line with
LD_LIBRARY_PATH=/scratch/var/tmp/portage/sci-biology/\
ncbi-tools++-22.0.0/work/ncbi_cxx--22_0_0_build/lib
The LDPATH setting probably enabled you to find a previously
installed version of the library.
François
PS: You can pass that analysis upstream because -lmlacli should
probably be added by right.
</quote>
Later François also wrote:
<quote>
rpath are usually the preferred solution but it is not the end all
solution. Looking for LDPATH in your /etc/env.d/ may shock you.
In the case of ncbi, adding path is only one of the solution I
would consider. I don’t see why they need to install in
/usr/lib{,64}/ncbi-tools++ rather than just /usr/lib{,64} in
the first place. It is not even versioned to allow several versions
installed in parallel. It is not plugins or “modules” or other
special kinds of shared objects.
Possibly it is some language runtime - at best. Does it use names
that could collide easily with something else? May be some of them
should be prefixed then.
</quote>
make[3]: Entering directory '/scratch/var/tmp/portage/sci-biology/\
ncbi-tools++-22.0.0/work/ncbi_cxx--22_0_0_build/build/app/speedtest'
Updating dependency information for /scratch/var/tmp/portage/sci-biology/\
ncbi-tools++-22.0.0/work/ncbi_cxx--22_0_0/src/app/speedtest/speedtest.cpp.
/usr/bin/x86_64-pc-linux-gnu-g++ -std=gnu++11 -c -Wall -Wno-format-y2k
-pthread -pipe -mpclmul -mpopcnt -march=native -ftree-vectorize -fPIC
-g -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
-D_MT -D_REENTRANT -D_THREAD_SAFE
-I/scratch/var/tmp/portage/sci-biology/ncbi-tools++-22.0.0/work/\
ncbi_cxx--22_0_0_build/inc
-I/scratch/var/tmp/portage/sci-biology/ncbi-tools++-22.0.0/work/\
ncbi_cxx--22_0_0/include
/scratch/var/tmp/portage/sci-biology/ncbi-tools++-22.0.0/work/\
ncbi_cxx--22_0_0/src/app/speedtest/speedtest.cpp
-o speedtest.o
/usr/bin/x86_64-pc-linux-gnu-g++ -std=gnu++11
-Wl,-rpath,/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0
-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -Wl,-O1
-Wl,--as-needed -g speedtest.o
-L/scratch/var/tmp/portage/sci-biology/ncbi-tools++-22.0.0/work/\
ncbi_cxx--22_0_0_build/lib
-lprosplign -lxalgoalignutil -ltaxon1 -lxalgoseq -lxcleanup -lxobjedit
-ltaxon3 -lvalid -lvalerr -lproteinkmer -lxblast -lxalgoblastdbindex
-lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io
-lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation
-lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat
-ltables -lxqueryparse -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1
-lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader
-lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit
-lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio
-lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lz -lnsl
-ldl -lpcre -llmdb -lpthread -ldw -ldl -lm -lpthread -o speedtest
/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../x86_64-pc-linux-gnu/\
bin/ld: warning: libmlacli.so, needed by /scratch/var/tmp/portage/\
sci-biology/ncbi-tools++-22.0.0/work/ncbi_cxx--22_0_0_build/lib/\
libxobjedit.so, not found (try using -rpath or -rpath-link)
The problem here is that the rpath would have to be provided when
you link libxobjedit.so. I checked the log and it wasn’t done.
And you definitely don’t want to do that unless you re-link without
the rpath (or the correct final rpath) at install time. For information
cmake does exactly that.
But in the end adding a path in this case is no substitute to providing
the libraries you need. When building stuff with libtool, libtool produces
test scripts that set LD_LIBRARY_PATH properly for running the tests before
install. So the test executables don’t have to be linked with rpath to
the build folder. Or the objects that you want to ship either.
</quote>
This change will ensure `LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib` is
passed to `bash ./src/build-system/configure` in `src_configure()`
and at least helps to get symbols resolved during linking although it
is probably still far from ideal.
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
.../ncbi-tools++/files/disable-testsuite-compilation.txt | 4 ++++
sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild | 11 ++++++++---
2 files changed, 12 insertions(+), 3 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt b/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
index 8df346f64..fa27aa13b 100644
--- a/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
+++ b/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
@@ -2,3 +2,7 @@
-.*/test
-.*/unit_test
-.*/unit_tests
+-dbapi/driver/ftds.*/freetds/.*/unittests
+-sample
+-.*/demo
+-.*/samples
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild
index 971789fb4..0c0e1b24c 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild
@@ -289,11 +289,11 @@ src_configure() {
# copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
# otherwise your -O2 will be dropped in some subdirectories and replaced by e.g. -O9
- einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
+ einfo "LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
# ECONF_SOURCE="src/build-system" \
# econf \
- bash \
+ LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib bash \
./src/build-system/configure \
--srcdir="${S}" \
--prefix="${EPREFIX}/usr" \
@@ -342,7 +342,7 @@ src_compile() {
# .../status/.dbapi_driver.dep or .../build/Makefile.flat.)
#
# To take full advantage of --with-flat-makefile, you'll need the following (instead of 'emake all_p -C "${S}"_build/build') and call configure --with-flat-makefile:
- emake -C "${S}"_build/build -f Makefile.flat
+ LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib emake -C "${S}"_build/build -f Makefile.flat
#
# >=gcc-5.3.0 is not supported, see also bug #579248#c8
# configure: error: Do not know how to build MT-safe with compiler /usr/bin/x86_64-pc-linux-gnu-g++ 5.3.0
@@ -351,6 +351,11 @@ src_compile() {
src_install() {
rm -rvf "${S}"_build/lib/ncbi || die
emake install prefix="${ED}/usr" libdir="${ED}/usr/$(get_libdir)/${PN}"
+ #
+ #if [ ! use static-libs -a ! use static ]; then
+ # rm -f "${ED}/usr/$(get_libdir)/${PN}"/*.a \
+ # "${ED}/usr/$(get_libdir)/${PN}"/*-static.a || die
+ #fi
# dobin "${S}"_build/bin/*
# dolib.so "${S}"_build/lib/*so*
^ permalink raw reply related [flat|nested] 30+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/
@ 2023-05-02 12:15 Andrew Ammerlaan
0 siblings, 0 replies; 30+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:15 UTC (permalink / raw
To: gentoo-commits
commit: 7e108279bb4d8cacad16e51875e704c885edc2e7
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:10:02 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:15:14 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7e108279
sci-biology/ncbi-tools++: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/ncbi-tools++/files/curl-types.patch | 24 --
.../files/disable-testsuite-compilation.txt | 8 -
sci-biology/ncbi-tools++/files/make_install.patch | 14 -
.../files/malloc_initialize_upstream_fix.patch | 100 -----
.../files/ncbi-tools++-12.0.0-bdb6.patch | 114 ------
.../files/ncbi-tools++-12.0.0-conf-opts.patch | 64 ----
.../files/ncbi-tools++-12.0.0-configure.patch | 216 -----------
.../ncbi-tools++-12.0.0-drop-STATIC-from-LIB.patch | 44 ---
.../ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch | 19 -
.../ncbi-tools++-12.0.0-fix-creaders-linking.patch | 11 -
.../files/ncbi-tools++-12.0.0-fix-install.patch | 11 -
.../ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch | 10 -
...cbi-tools++-12.0.0-linkage-tuneups-addons.patch | 13 -
.../ncbi-tools++-12.0.0-linkage-tuneups.patch | 421 ---------------------
.../files/ncbi-tools++-12.0.0-more-patches.patch | 136 -------
...cbi-tools++-12.0.0-never_build_test_boost.patch | 11 -
...ncbi-tools++-12.0.0-support-autoconf-2.60.patch | 296 ---------------
.../files/ncbi-tools++-18.0.0-configure.patch | 20 -
...bi-tools++-18.0.0-fix-annotwriter-linking.patch | 15 -
...ols++-18.0.0-fix-app-blast_sample-linking.patch | 26 --
...i-tools++-18.0.0-fix-app-compartp-linking.patch | 29 --
...ools++-18.0.0-fix-app-convert_seq-linking.patch | 11 -
...bi-tools++-18.0.0-fix-app-hfilter-linking.patch | 14 -
...bi-tools++-18.0.0-fix-app-igblast-linking.patch | 28 --
...i-tools++-18.0.0-fix-app-rmblastn-linking.patch | 11 -
...-tools++-18.0.0-fix-app-table2asn-linking.patch | 13 -
.../ncbi-tools++-18.0.0-fix-app-tls-linking.patch | 11 -
...-tools++-18.0.0-fix-app-vecscreen-linking.patch | 13 -
...cbi-tools++-18.0.0-fix-apps-blast-linking.patch | 130 -------
.../files/ncbi-tools++-18.0.0-fix-install.patch | 11 -
.../ncbi-tools++-18.0.0-fix-ncfetch-linking.patch | 11 -
...++-18.0.0-fix-netcache_cgi_sample-linking.patch | 11 -
...-tools++-18.0.0-fix-netstorage_gc-linking.patch | 11 -
...tools++-18.0.0-fix-sample-app-cgi-linking.patch | 11 -
...ncbi-tools++-18.0.0-fix-speedtest-linking.patch | 11 -
.../ncbi-tools++-18.0.0-fix-splign-linking.patch | 11 -
.../ncbi-tools++-18.0.0-fix-srcchk-linking.patch | 15 -
.../ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch | 10 -
...cbi-tools++-18.0.0-fix-undefined-xobjread.patch | 11 -
...cbi-tools++-18.0.0-never_build_test_boost.patch | 11 -
.../ncbi-tools++-18.0.0-remove-old-symlinks.patch | 10 -
.../report_project_settings_configure.ac.patch | 64 ----
.../files/report_project_settings_configure.patch | 66 ----
.../files/respect_CXXFLAGS_configure.ac.patch | 54 ---
.../files/respect_CXXFLAGS_configure.patch | 53 ---
sci-biology/ncbi-tools++/metadata.xml | 19 -
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 364 ------------------
.../ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 383 -------------------
.../ncbi-tools++/ncbi-tools++-22.0.0.ebuild | 388 -------------------
49 files changed, 3358 deletions(-)
diff --git a/sci-biology/ncbi-tools++/files/curl-types.patch b/sci-biology/ncbi-tools++/files/curl-types.patch
deleted file mode 100644
index 3e6079057..000000000
--- a/sci-biology/ncbi-tools++/files/curl-types.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-Index: libs/kns/url-fetcher-curl.c
-===================================================================
---- src/sra/sdk/libs/kns/url-fetcher-curl.c (revision 11878)
-+++ src/sra/sdk/libs/kns/url-fetcher-curl.c (revision 11880)
-@@ -38,7 +38,6 @@
- #include <string.h>
-
- #include <curl/curl.h>
--#include <curl/types.h>
- #include <curl/easy.h>
-
- /*--------------------------------------------------------------------------
-Index: tools/refseq-load/refseq-load.c
-===================================================================
---- src/sra/sdk/tools/refseq-load/refseq-load.c (revision 11878)
-+++ src/sra/sdk/tools/refseq-load/refseq-load.c (revision 11880)
-@@ -41,7 +41,6 @@
- #include <sysalloc.h>
-
- #include <curl/curl.h>
--#include <curl/types.h>
- #include <curl/easy.h>
-
- #include <stdlib.h>
diff --git a/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt b/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
deleted file mode 100644
index fa27aa13b..000000000
--- a/sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-.*
--.*/test
--.*/unit_test
--.*/unit_tests
--dbapi/driver/ftds.*/freetds/.*/unittests
--sample
--.*/demo
--.*/samples
diff --git a/sci-biology/ncbi-tools++/files/make_install.patch b/sci-biology/ncbi-tools++/files/make_install.patch
deleted file mode 100644
index e98f1110d..000000000
--- a/sci-biology/ncbi-tools++/files/make_install.patch
+++ /dev/null
@@ -1,14 +0,0 @@
---- src/build-system/Makefile.in.top.old 2013-01-07 23:07:29.970141951 +0100
-+++ src/build-system/Makefile.in.top 2013-01-07 23:08:37.940990190 +0100
-@@ -39,7 +39,10 @@
- -$(RMDIR) $(pincludedir)
- $(INSTALL) -d $(bindir) $(libdir) $(pincludedir)
- $(INSTALL) $(lbindir)/* $(bindir)
-- $(INSTALL) -m 644 $(llibdir)/* $(libdir)
-+ $(INSTALL) -m 644 $(llibdir)/*.* $(libdir)
-+ if test -d $(llibdir)/ncbi; then \
-+ cp -pPR $(llibdir)/ncbi $(libdir)/; \
-+ fi
- -rm -f $(libdir)/lib*-static.a
- cd $(libdir) && \
- for x in *.a; do ln -s "$$x" "`basename \"$$x\" .a`-static.a"; done
diff --git a/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch b/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch
deleted file mode 100644
index 4900e529a..000000000
--- a/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch
+++ /dev/null
@@ -1,100 +0,0 @@
---- trunk/c++/src/app/netcache/nc_memory.cpp 2011/12/16 17:42:54 52330
-+++ trunk/c++/src/app/netcache/nc_memory.cpp 2012/02/27 14:38:30 53136
-@@ -360,7 +360,7 @@
- m_ObjLock.Lock();
- ++m_SysFrees;
- m_SystemMem -= alloced_size;
-- m_LostMem -= alloced_size -= asked_size;
-+ m_LostMem -= alloced_size - asked_size;
- m_ObjLock.Unlock();
- }
-
-@@ -2539,7 +2539,7 @@
- bool
- CNCMemManager::InitializeApp(void)
- {
-- try {
-+ /*try {
- CSQLITE_Global::SetCustomMallocFuncs(&s_NCMallocMethods);
- }
- catch (CSQLITE_Exception& ex) {
-@@ -2547,13 +2547,15 @@
- return false;
- }
-
-- return CNCMMCentral::RunLateInit();
-+ return CNCMMCentral::RunLateInit();*/
-+ g_InitNCThreadIndexes();
-+ return true;
- }
-
- void
- CNCMemManager::FinalizeApp(void)
- {
-- CNCMMCentral::PrepareToStop();
-+ //CNCMMCentral::PrepareToStop();
- }
-
- void
-@@ -2571,28 +2573,29 @@
- void
- CNCMemManager::PrintStats(CPrintTextProxy& proxy)
- {
-- CNCMMStats stats_sum;
-+ /*CNCMMStats stats_sum;
- CNCMMStats::CollectAllStats(&stats_sum);
-- stats_sum.Print(proxy);
-+ stats_sum.Print(proxy);*/
- }
-
- size_t
- CNCMemManager::GetMemoryLimit(void)
- {
-- return CNCMMCentral::GetMemLimit();
-+ return 0;//CNCMMCentral::GetMemLimit();
- }
-
- size_t
- CNCMemManager::GetMemoryUsed(void)
- {
-- CNCMMStats stat;
-+ /*CNCMMStats stat;
- CNCMMStats::CollectAllStats(&stat);
-- return stat.GetSystemMem();
-+ return stat.GetSystemMem();*/
-+ return 0;
- }
-
- END_NCBI_SCOPE
-
--
-+/*
- void*
- operator new (size_t size)
- #ifndef NCBI_COMPILER_MSVC
-@@ -2626,13 +2629,13 @@
- {
- NCBI_NS_NCBI::CNCMMCentral::DeallocMemory(ptr);
- }
--
-+*/
- #ifdef __GLIBC__
- // glibc has special method of overriding C library allocation functions.
-
- #include <malloc.h>
-
--
-+/*
- void* s_NCMallocHook(size_t size, const void* caller)
- {
- return NCBI_NS_NCBI::CNCMMCentral::AllocMemory(size);
-@@ -2656,7 +2659,7 @@
- }
-
- void (*__malloc_initialize_hook) (void) = s_NCInitMallocHook;
--
-+*/
- #elif !defined(NCBI_OS_MSWIN)
- // Changing of C library allocation functions on Windows is very tricky (if
- // possible at all) and NetCache will never run in production on Windows. So
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-bdb6.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-bdb6.patch
deleted file mode 100644
index 9589481d4..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-bdb6.patch
+++ /dev/null
@@ -1,114 +0,0 @@
-Index: include/db/bdb/bdb_file.hpp
-===================================================================
---- include/db/bdb/bdb_file.hpp (revision 470126)
-+++ include/db/bdb/bdb_file.hpp (working copy)
-@@ -660,6 +660,9 @@
- void x_ConstructKeyBuf();
- void x_ConstructDataBuf();
-
-+ static int x_CompareShim(DB* db, const DBT* dbt1, const DBT* dbt2,
-+ size_t* locp);
-+
- private:
- auto_ptr<CBDB_BufferManager> m_KeyBuf;
- auto_ptr<CBDB_BufferManager> m_DataBuf;
-Index: src/db/bdb/bdb_blob.cpp
-===================================================================
---- src/db/bdb/bdb_blob.cpp (revision 470126)
-+++ src/db/bdb/bdb_blob.cpp (working copy)
-@@ -583,12 +583,31 @@
- return m_DBT_Data->size;
- }
-
-+#if DB_VERSION_MAJOR >= 6
-+extern "C" {
-+ typedef int (*BDB_CompareFunction_V6)(DB*, const DBT*, const DBT*,
-+ size_t*);
-+ int BDB_Uint4Compare_V6(DB* db, const DBT* dbt1, const DBT* dbt2, size_t*)
-+ { return BDB_Uint4Compare(db, dbt1, dbt2); }
-+ int BDB_ByteSwap_Uint4Compare_V6(DB* db, const DBT* dbt1, const DBT* dbt2,
-+ size_t*)
-+ { return BDB_ByteSwap_Uint4Compare(db, dbt1, dbt2); }
-+}
-+#endif
-+
- void CBDB_LobFile::SetCmp(DB*)
- {
-+#if DB_VERSION_MAJOR >= 6
-+ BDB_CompareFunction_V6 func = BDB_Uint4Compare_V6;
-+ if (IsByteSwapped()) {
-+ func = BDB_ByteSwap_Uint4Compare_V6;
-+ }
-+#else
- BDB_CompareFunction func = BDB_Uint4Compare;
- if (IsByteSwapped()) {
- func = BDB_ByteSwap_Uint4Compare;
- }
-+#endif
-
- _ASSERT(func);
- int ret = m_DB->set_bt_compare(m_DB, func);
-Index: src/db/bdb/bdb_file.cpp
-===================================================================
---- src/db/bdb/bdb_file.cpp (revision 470126)
-+++ src/db/bdb/bdb_file.cpp (working copy)
-@@ -1535,12 +1535,27 @@
- }
-
-
-+#if DB_VERSION_MAJOR >= 6
-+int CBDB_File::x_CompareShim(DB* db, const DBT* dbt1, const DBT* dbt2, size_t*)
-+{
-+ const CBDB_BufferManager* key_buf
-+ = static_cast<const CBDB_BufferManager*>(db->app_private);
-+ _ASSERT(key_buf);
-+ return (key_buf->GetCompareFunction())(db, dbt1, dbt2);
-+}
-+#endif
-+
-+
- void CBDB_File::SetCmp(DB* db)
- {
- _ASSERT(m_DB_Type == eBtree);
-+#if DB_VERSION_MAJOR >= 6
-+ int ret = db->set_bt_compare(db, x_CompareShim);
-+#else
- BDB_CompareFunction func = m_KeyBuf->GetCompareFunction();
- _ASSERT(func);
- int ret = db->set_bt_compare(db, func);
-+#endif
- BDB_CHECK(ret, 0);
-
- if (m_PrefixCompress) {
-@@ -2056,12 +2071,31 @@
- BindKey("id", &IdKey);
- }
-
-+#if DB_VERSION_MAJOR >= 6
-+extern "C" {
-+ typedef int (*BDB_CompareFunction_V6)(DB*, const DBT*, const DBT*,
-+ size_t*);
-+ int BDB_Int4Compare_V6(DB* db, const DBT* dbt1, const DBT* dbt2, size_t*)
-+ { return BDB_Int4Compare(db, dbt1, dbt2); }
-+ int BDB_ByteSwap_Int4Compare_V6(DB* db, const DBT* dbt1, const DBT* dbt2,
-+ size_t*)
-+ { return BDB_ByteSwap_Int4Compare(db, dbt1, dbt2); }
-+}
-+#endif
-+
- void CBDB_IdFile::SetCmp(DB* /* db */)
- {
-+#if DB_VERSION_MAJOR >= 6
-+ BDB_CompareFunction_V6 func = BDB_Int4Compare_V6;
-+ if (IsByteSwapped()) {
-+ func = BDB_ByteSwap_Int4Compare_V6;
-+ }
-+#else
- BDB_CompareFunction func = BDB_Int4Compare;
- if (IsByteSwapped()) {
- func = BDB_ByteSwap_Int4Compare;
- }
-+#endif
-
- _ASSERT(func);
- int ret = m_DB->set_bt_compare(m_DB, func);
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch
deleted file mode 100644
index 3ed3e7d5f..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-conf-opts.patch
+++ /dev/null
@@ -1,64 +0,0 @@
- src/build-system/configure.ac | 17 ++++++++++++++---
- 1 file changed, 14 insertions(+), 3 deletions(-)
-
-diff --git a/src/build-system/configure.ac b/src/build-system/configure.ac
-index 03e34b4..336453d 100644
---- a/src/build-system/configure.ac
-+++ b/src/build-system/configure.ac
-@@ -224,7 +224,7 @@ AC_ARG_WITH(ncbi-c,
- AC_ARG_WITH(sss,
- [ --without-sss do not use NCBI SSS libraries])
- AC_ARG_WITH(sssutils,
-- [ --without-utils do not use NCBI SSS UTIL library])
-+ [ --without-sssutils do not use NCBI SSS UTIL library])
- AC_ARG_WITH(sssdb,
- [ --without-sssdb do not use NCBI SSS DB library])
- AC_ARG_WITH(included-sss,
-@@ -490,13 +490,13 @@ check ncbi-public strip pch caution ccache distcc \
- ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
- geo included-geo \
- z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
--ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
-+ftds mysql orbacus odbc freetype ftgl opengl mesa glut glew glew-mx \
- bdb python perl jni sqlite3 icu boost boost-tag \
- sp expat sablot libxml libxslt libexslt xerces xalan zorba \
- oechem sge muparser hdf5 \
- gif jpeg tiff png xpm magic curl mimetic 3psw \
- local-lbsm ncbi-crypt connext \
--serial objects dbapi app ctools gui algo internal gbench"
-+serial objects dbapi app ctools gui algo internal gbench x"
-
- changequote(, )dnl
- x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-@@ -522,6 +522,7 @@ for x_arg in "$@" ; do
- case "$x_arg" in
- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-+ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
- | --with-relative-runpath= | --x-includes= | --x-libraries= )
- AC_MSG_ERROR([$x_arg: requires value; use --help to show usage])
- ;;
-@@ -532,6 +533,7 @@ for x_arg in "$@" ; do
- | --with-universal=* | --with-tcheck=* \
- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-+ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
- | [[A-Z]*=*] \
- | --with-z=* | --with-bz2=* | --with-lzo=* \
- | --with-pcre=* \
-@@ -647,6 +649,15 @@ if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
- *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
- esac
- fi
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
-+fi
-
- #### Always define this
- AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch
deleted file mode 100644
index d44993da2..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-configure.patch
+++ /dev/null
@@ -1,216 +0,0 @@
---- ncbi_cxx--12_0_0/src/build-system/configure.ori 2014-06-25 23:47:05.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/configure 2014-06-25 23:52:35.000000000 +0200
-@@ -927,7 +927,7 @@
- --without-distcc do not automatically use distcc if available
- --without-ncbi-c do not use NCBI C Toolkit
- --without-sss do not use NCBI SSS libraries
-- --without-utils do not use NCBI SSS UTIL library
-+ --without-sssutils do not use NCBI SSS UTIL library
- --without-sssdb do not use NCBI SSS DB library
- --with-included-sss use the in-tree copy of SSS
- --with-z=DIR use zlib installation in DIR
-@@ -2965,13 +2965,13 @@
- ncbi-c wxwidgets wxwidgets-ucs fastcgi sss sssdb sssutils included-sss \
- geo included-geo \
- z bz2 lzo pcre gcrypt gnutls openssl krb5 sybase sybase-local sybase-new \
--ftds mysql orbacus freetype ftgl opengl mesa glut glew glew-mx \
-+ftds mysql orbacus odbc freetype ftgl opengl mesa glut glew glew-mx \
- bdb python perl jni sqlite3 icu boost boost-tag \
- sp expat sablot libxml libxslt libexslt xerces xalan zorba \
- oechem sge muparser hdf5 \
- gif jpeg tiff png xpm magic curl mimetic 3psw \
- local-lbsm ncbi-crypt connext \
--serial objects dbapi app ctools gui algo internal gbench"
-+serial objects dbapi app ctools gui algo internal gbench x"
-
- x_with_list=`echo "$x_with_list" | sed 's/\([^ ][^ ]*\)/--with-\1 --without-\1/g'`
-
-@@ -2995,6 +2995,7 @@
- case "$x_arg" in
- --with-extra-action= | --exec-prefix= | --with-projects= | --srcdir= \
- | --cache-file= | --build= | --host= | --target= | --with-runpath= \
-+ | --mandir= | --infodir= | --datadir= | --sysconfdir= | --localstatedir= \
- | --with-relative-runpath= | --x-includes= | --x-libraries= )
- { { echo "$as_me:$LINENO: error: $x_arg: requires value; use --help to show usage" >&5
- echo "$as_me: error: $x_arg: requires value; use --help to show usage" >&2;}
-@@ -3007,6 +3008,7 @@
- | --with-universal=* | --with-tcheck=* \
- | --cache-file=* | --build=* | --host=* | --prefix=* | --exec-prefix=* \
- | --libdir=* | --bindir=* | --includedir=* | --srcdir=* \
-+ | --mandir=* | --infodir=* | --datadir=* | --sysconfdir=* | --localstatedir=* \
- | [A-Z]*=* \
- | --with-z=* | --with-bz2=* | --with-lzo=* \
- | --with-pcre=* \
-@@ -3201,6 +3203,17 @@
- *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
- esac
- fi
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ { { echo "$as_me:$LINENO: error: unable to read requested projects file \"$abs_projects\"." >&5
-+echo "$as_me: error: unable to read requested projects file \"$abs_projects\"." >&2;}
-+ { (exit 1); exit 1; }; }
-+fi
-
- #### Always define this
-
-@@ -17878,68 +17891,6 @@
- fi
-
-
--echo "$as_me:$LINENO: checking for std::is_sorted<> in <algorithm>" >&5
--echo $ECHO_N "checking for std::is_sorted<> in <algorithm>... $ECHO_C" >&6
--if test "${ncbi_cv_func_is_sorted+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--#include <algorithm>
--int
--main ()
--{
--int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_func_is_sorted=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_func_is_sorted=no
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_func_is_sorted" >&5
--echo "${ECHO_T}$ncbi_cv_func_is_sorted" >&6
--if test "$ncbi_cv_func_is_sorted" = yes; then
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_IS_SORTED 1
--_ACEOF
--
--fi
--
--
-
- echo "$as_me:$LINENO: checking for SysV semaphores" >&5
- echo $ECHO_N "checking for SysV semaphores... $ECHO_C" >&6
-@@ -18550,7 +18501,7 @@
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ncbi_cv_c_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_c_restrict" = "no" || break
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -18620,7 +18571,7 @@
- echo $ECHO_N "(cached) $ECHO_C" >&6
- else
- ncbi_cv_cxx_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_cxx_restrict" = "no" || break
- cat >conftest.$ac_ext <<_ACEOF
- /* confdefs.h. */
-@@ -19046,67 +18997,6 @@
- _ACEOF
-
- fi
--
--echo "$as_me:$LINENO: checking whether $CXX supports C++0x nullptr" >&5
--echo $ECHO_N "checking whether $CXX supports C++0x nullptr... $ECHO_C" >&6
--if test "${ncbi_cv_cxx_nullptr+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--
--int
--main ()
--{
--void * p = nullptr;
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext
--if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-- (eval $ac_compile) 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_cxx_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; } &&
-- { ac_try='test -s conftest.$ac_objext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
-- ac_status=$?
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); }; }; then
-- ncbi_cv_cxx_nullptr=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
--ncbi_cv_cxx_nullptr=no
--fi
--rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
--fi
--echo "$as_me:$LINENO: result: $ncbi_cv_cxx_nullptr" >&5
--echo "${ECHO_T}$ncbi_cv_cxx_nullptr" >&6
--if test "$ncbi_cv_cxx_nullptr" = yes; then
--
--cat >>confdefs.h <<\_ACEOF
--#define HAVE_NULLPTR 1
--_ACEOF
--
--fi
-
- ### Check for the availability of other packages
- ### --------------------------------------------
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-drop-STATIC-from-LIB.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-drop-STATIC-from-LIB.patch
deleted file mode 100644
index fad02c38e..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-drop-STATIC-from-LIB.patch
+++ /dev/null
@@ -1,44 +0,0 @@
---- ncbi_cxx--12_0_0/src/app/speedtest/Makefile.speedtest.app.ori 2014-06-26 16:46:27.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/app/speedtest/Makefile.speedtest.app 2014-06-26 16:47:26.000000000 +0200
-@@ -9,7 +9,7 @@
- APP = speedtest
- SRC = speedtest
- LIB = prosplign xalgoalignutil xalgoseq xcleanup taxon1 submit $(BLAST_LIBS) \
-- xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS:%=%$(STATIC))
-+ xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
-
---- ncbi_cxx--12_0_0/src/app/compart/Makefile.compart.app.ori 2014-06-26 16:47:53.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/app/compart/Makefile.compart.app 2014-06-26 16:48:07.000000000 +0200
-@@ -7,7 +7,7 @@
-
- LIB = xalgoalignutil xalgoalignsplign xalgoalignnw xalgoseq \
- taxon1 xalnmgr xqueryparse xregexp $(PCRE_LIB) \
-- $(BLAST_LIBS:%=%$(STATIC)) $(OBJMGR_LIBS:%=%$(STATIC))
-+ $(BLAST_LIBS) $(OBJMGR_LIBS)
-
- LIBS = $(PCRE_LIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
---- ncbi_cxx--12_0_0/src/app/igblast/Makefile.igblastp.app.ori 2014-06-26 17:45:11.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/app/igblast/Makefile.igblastp.app 2014-06-26 17:48:26.000000000 +0200
-@@ -3,7 +3,7 @@
- APP = igblastp
- SRC = igblastp_app
- LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
--LIB = blast_app_util igblast $(LIB_:%=%$(STATIC))
-+LIB = blast_app_util igblast $(LIB_)
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
- CFLAGS = $(FAST_CFLAGS:ppc=i386)
---- ncbi_cxx--12_0_0/src/app/igblast/Makefile.igblastn.app.ori 2014-06-26 17:47:53.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/app/igblast/Makefile.igblastn.app 2014-06-26 17:49:31.000000000 +0200
-@@ -3,7 +3,7 @@
- APP = igblastn
- SRC = igblastn_app
- LIB_ = $(BLAST_INPUT_LIBS) xalgoalignutil xqueryparse $(BLAST_LIBS) $(OBJMGR_LIBS)
--LIB = blast_app_util igblast $(LIB_:%=%$(STATIC))
-+LIB = blast_app_util igblast $(LIB_)
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
- CFLAGS = $(FAST_CFLAGS:ppc=i386)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch
deleted file mode 100644
index fede70e51..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-FreeTDS-upstream.patch
+++ /dev/null
@@ -1,19 +0,0 @@
---- src/app/agpconvert/Makefile.agpconvert.app.ori 2013-09-13 23:56:22.660032261 +0200
-+++ src/app/agpconvert/Makefile.agpconvert.app 2013-09-13 23:57:31.340032441 +0200
-@@ -6,13 +6,12 @@
- APP = agpconvert
- SRC = agpconvert
-
--LIB = xalgoseq xobjedit $(OBJREAD_LIBS) taxon1 xalnmgr xobjutil submit \
-- ncbi_xdbapi_ftds $(FTDS_LIB) tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
--LIBS = $(FTDS_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-+LIB = $(OBJREAD_LIBS) taxon1 xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-+LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
--REQUIRES = objects algo
-+REQUIRES = objects
-
- WATCHERS = xiangcha
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch
deleted file mode 100644
index 46c2e83fb..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/objtools/alnmgr/demo/Makefile.alnmrg.app.ori 2013-09-13 23:51:34.340031508 +0200
-+++ src/objtools/alnmgr/demo/Makefile.alnmrg.app 2013-09-13 23:51:36.660031514 +0200
-@@ -5,7 +5,7 @@
- SRC = alnmrg
-
- LIB = xalnmgr $(OBJREAD_LIBS) ncbi_xloader_blastdb seqdb xobjutil submit blastdb \
-- tables $(OBJMGR_LIBS)
-+ tables creaders $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-install.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-install.patch
deleted file mode 100644
index 97e845fdb..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-install.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--12_0_0/src/build-system/Makefile.in.top.ori 2014-06-26 22:49:49.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/Makefile.in.top 2014-06-26 22:50:57.000000000 +0200
-@@ -48,7 +48,7 @@
- for x in *.a; do ln -s "$$x" "`basename \"$$x\" .a`-static.a"; done
- cd $(includedir0) && find * -name CVS -prune -o -print |\
- cpio -pd $(pincludedir)
-- $(INSTALL) -m 644 $(incdir)/* $(pincludedir)
-+ $(INSTALL) -m 644 $(incdir)/*.* $(pincludedir)
- ## set up appropriate build and status directories somewhere under $(libdir)?
-
- install-gbench:
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch
deleted file mode 100644
index 8bba91f1d..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-svn-URL-upstream.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- scripts/common/new_project.sh (revision 408264)
-+++ scripts/common/new_project.sh (working copy)
-@@ -6,7 +6,7 @@
- svn_revision=`echo '$Revision$' | sed "s%\\$[R]evision: *\\([^$][^$]*\\) \\$.*%\\1%"`
- def_builddir="$NCBI/c++/Debug/build"
-
--repository_url='https://svn.ncbi.nlm.nih.gov/repos/toolkit'
-+repository_url='http://anonsvn.ncbi.nlm.nih.gov/repos/v1'
- tmp_app_checkout_dir='tmp_app_sample'
- stem='sample/app'
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups-addons.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups-addons.patch
deleted file mode 100644
index 553e41d29..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups-addons.patch
+++ /dev/null
@@ -1,13 +0,0 @@
---- ncbi_cxx--12_0_0/src/app/agpconvert/Makefile.agpconvert.app.ori (revision 439078)
-+++ ncbi_cxx--12_0_0/src/app/agpconvert/Makefile.agpconvert.app (working copy)
-@@ -7,8 +7,8 @@
- SRC = agpconvert
-
- LIB = xalgoseq xobjedit $(OBJREAD_LIBS) taxon1 xalnmgr xobjutil submit \
-- ncbi_xdbapi_ftds $(FTDS_LIB) tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
--LIBS = $(FTDS_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-+ tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-+LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups.patch
deleted file mode 100644
index 86e96b865..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-linkage-tuneups.patch
+++ /dev/null
@@ -1,421 +0,0 @@
-Index: src/algo/blast/format/Makefile.xblastformat.lib
-===================================================================
---- src/algo/blast/format/Makefile.xblastformat.lib (revision 439078)
-+++ src/algo/blast/format/Makefile.xblastformat.lib (working copy)
-@@ -7,6 +7,6 @@
-
- CPPFLAGS = -DNCBI_MODULE=BLASTFORMAT $(ORIG_CPPFLAGS)
-
--DLL_LIB = align_format blastxml xhtml xcgi
-+DLL_LIB = align_format xblast xnetblast blastxml xhtml xcgi
-
- WATCHERS = jianye zaretska madden camacho fongah2
-Index: src/app/compart/Makefile.compart.app
-===================================================================
---- src/app/compart/Makefile.compart.app (revision 439078)
-+++ src/app/compart/Makefile.compart.app (working copy)
-@@ -5,11 +5,11 @@
- APP = compart
- SRC = compart
-
--LIB = xalgoalignutil xalgoalignsplign xalgoalignnw xqueryparse xalnmgr \
-- $(BLAST_LIBS:%=%$(STATIC)) \
-- $(OBJMGR_LIBS:%=%$(STATIC))
-+LIB = xalgoalignutil xalgoalignsplign xalgoalignnw xalgoseq \
-+ taxon1 xalnmgr xqueryparse xregexp $(PCRE_LIB) \
-+ $(BLAST_LIBS:%=%$(STATIC)) $(OBJMGR_LIBS:%=%$(STATIC))
-
--LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-+LIBS = $(PCRE_LIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-Index: src/app/compart/Makefile.compartp.app
-===================================================================
---- src/app/compart/Makefile.compartp.app (revision 439078)
-+++ src/app/compart/Makefile.compartp.app (working copy)
-@@ -5,7 +5,8 @@
- APP = compartp
- SRC = compartp
-
--LIB = prosplign xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
-+LIB = prosplign xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) \
-+ xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
-Index: src/app/grid/util/Makefile.ncfetch.app
-===================================================================
---- src/app/grid/util/Makefile.ncfetch.app (revision 439078)
-+++ src/app/grid/util/Makefile.ncfetch.app (working copy)
-@@ -5,7 +5,7 @@
- APP = ncfetch.cgi
- SRC = ncfetch
-
--LIB = xcgi xconnserv xconnect xutil xncbi
-+LIB = xcgi xconnserv xthrserv xconnect xutil xncbi
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
- WATCHERS = kazimird
-Index: src/app/hfilter/Makefile.hfilter.app
-===================================================================
---- src/app/hfilter/Makefile.hfilter.app (revision 439078)
-+++ src/app/hfilter/Makefile.hfilter.app (working copy)
-@@ -5,9 +5,10 @@
- APP = hfilter
- SRC = hitfilter_app
-
--LIB = xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
-+LIB = xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) xqueryparse \
-+ xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-
--LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-+LIBS = $(PCRE_LIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-Index: src/app/speedtest/Makefile.speedtest.app
-===================================================================
---- src/app/speedtest/Makefile.speedtest.app (revision 439078)
-+++ src/app/speedtest/Makefile.speedtest.app (working copy)
-@@ -8,7 +8,7 @@
-
- APP = speedtest
- SRC = speedtest
--LIB = prosplign xalgoalignutil xcleanup submit $(BLAST_LIBS) \
-+LIB = prosplign xalgoalignutil xalgoseq xcleanup taxon1 submit $(BLAST_LIBS) \
- xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS:%=%$(STATIC))
-
- LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
-Index: src/app/splign/Makefile.splign.app
-===================================================================
---- src/app/splign/Makefile.splign.app (revision 439078)
-+++ src/app/splign/Makefile.splign.app (working copy)
-@@ -12,7 +12,7 @@
- LIB = xalgoalignsplign xalgoalignutil xalgoalignnw \
- $(BLAST_DB_DATA_LOADER_LIBS) \
- ncbi_xloader_lds2 lds2 sqlitewrapp \
-- xqueryparse xalgoseq $(PCRE_LIB) \
-+ xqueryparse xalgoseq taxon1 xregexp $(PCRE_LIB) \
- $(BLAST_LIBS:%=%$(STATIC)) submit \
- $(OBJMGR_LIBS:%=%$(STATIC))
-
-Index: src/connect/services/test/Makefile.test_nsstorage.app
-===================================================================
---- src/connect/services/test/Makefile.test_nsstorage.app (revision 439078)
-+++ src/connect/services/test/Makefile.test_nsstorage.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = test_nsstorage
- SRC = test_nsstorage
--LIB = xconnserv xconnect xutil xncbi
-+LIB = xconnserv xthrserv xconnect xutil xncbi
-
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
-Index: src/misc/hgvs/test/Makefile.hgvs2variation.app
-===================================================================
---- src/misc/hgvs/test/Makefile.hgvs2variation.app (revision 439078)
-+++ src/misc/hgvs/test/Makefile.hgvs2variation.app (working copy)
-@@ -6,7 +6,7 @@
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
-
--LIB_ = hgvs variation \
-+LIB_ = hgvs objcoords variation \
- entrez2cli entrez2 xregexp $(PCRE_LIB) xobjutil $(OBJMGR_LIBS)
- LIB = $(LIB_:%=%$(STATIC))
-
-Index: src/misc/hgvs/test/Makefile.test_hgvs_parser.app
-===================================================================
---- src/misc/hgvs/test/Makefile.test_hgvs_parser.app (revision 439078)
-+++ src/misc/hgvs/test/Makefile.test_hgvs_parser.app (working copy)
-@@ -5,7 +5,7 @@
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
-
--LIB_ = hgvs variation test_boost xregexp $(PCRE_LIB) xobjutil \
-+LIB_ = hgvs objcoords variation test_boost xregexp $(PCRE_LIB) xobjutil \
- entrez2cli entrez2 $(OBJMGR_LIBS)
-
- LIB = $(LIB_:%=%$(STATIC))
-Index: src/objects/biblio/Makefile.biblio.lib
-===================================================================
---- src/objects/biblio/Makefile.biblio.lib (revision 439078)
-+++ src/objects/biblio/Makefile.biblio.lib (working copy)
-@@ -1,2 +1,4 @@
- LIB = biblio
- SRC = biblio__ biblio___ citation_base
-+
-+DLL_LIB = general
-Index: src/objects/blast/Makefile.blast.lib
-===================================================================
---- src/objects/blast/Makefile.blast.lib (revision 439078)
-+++ src/objects/blast/Makefile.blast.lib (working copy)
-@@ -1,4 +1,6 @@
- LIB = xnetblast
- SRC = blast__ blast___ names
-
-+DLL_LIB = scoremat seqset
-+
- WATCHERS = camacho
-Index: src/objects/blast/Makefile.xnetblastcli.lib
-===================================================================
---- src/objects/blast/Makefile.xnetblastcli.lib (revision 439078)
-+++ src/objects/blast/Makefile.xnetblastcli.lib (working copy)
-@@ -2,3 +2,5 @@
-
- LIB = xnetblastcli
- SRC = blastclient blastclient_
-+
-+DLL_LIB = xnetblast xconnect
-Index: src/objects/blastdb/Makefile.blastdb.lib
-===================================================================
---- src/objects/blastdb/Makefile.blastdb.lib (revision 439078)
-+++ src/objects/blastdb/Makefile.blastdb.lib (working copy)
-@@ -1,2 +1,4 @@
- LIB = blastdb
- SRC = blastdb__ blastdb___
-+
-+DLL_LIB = seq
-Index: src/objects/general/Makefile.general.lib
-===================================================================
---- src/objects/general/Makefile.general.lib (revision 439078)
-+++ src/objects/general/Makefile.general.lib (working copy)
-@@ -1,2 +1,4 @@
- LIB = general
- SRC = general__ general___ uoconv
-+
-+DLL_LIB = xser
-Index: src/objects/medline/Makefile.medline.lib
-===================================================================
---- src/objects/medline/Makefile.medline.lib (revision 439078)
-+++ src/objects/medline/Makefile.medline.lib (working copy)
-@@ -1,2 +1,4 @@
- LIB = medline
- SRC = medline__ medline___
-+
-+DLL_LIB = biblio general
-Index: src/objects/pub/Makefile.pub.lib
-===================================================================
---- src/objects/pub/Makefile.pub.lib (revision 439078)
-+++ src/objects/pub/Makefile.pub.lib (working copy)
-@@ -1,2 +1,4 @@
- LIB = pub
- SRC = pub__ pub___
-+
-+DLL_LIB = medline biblio
-Index: src/objects/scoremat/Makefile.scoremat.lib
-===================================================================
---- src/objects/scoremat/Makefile.scoremat.lib (revision 439078)
-+++ src/objects/scoremat/Makefile.scoremat.lib (working copy)
-@@ -1,2 +1,4 @@
- LIB = scoremat
- SRC = scoremat__ scoremat___
-+
-+DLL_LIB = seqset
-Index: src/objects/seq/Makefile.seq.lib
-===================================================================
---- src/objects/seq/Makefile.seq.lib (revision 439078)
-+++ src/objects/seq/Makefile.seq.lib (working copy)
-@@ -13,3 +13,5 @@
- seq_loc_from_string seq_loc_reverse_complementer
-
- WATCHERS = vasilche grichenk
-+
-+DLL_LIB = seqcode pub biblio general xser sequtil
-Index: src/objects/seqset/Makefile.seqset.lib
-===================================================================
---- src/objects/seqset/Makefile.seqset.lib (revision 439078)
-+++ src/objects/seqset/Makefile.seqset.lib (working copy)
-@@ -1,2 +1,4 @@
- LIB = seqset
- SRC = seqset__ seqset___ gb_release_file
-+
-+DLL_LIB = xser
-Index: src/objects/taxon1/Makefile.taxon1.lib
-===================================================================
---- src/objects/taxon1/Makefile.taxon1.lib (revision 439078)
-+++ src/objects/taxon1/Makefile.taxon1.lib (working copy)
-@@ -3,4 +3,6 @@
- LIB = taxon1
- SRC = taxon1__ taxon1___ taxon1 cache utils ctreecont
-
-+DLL_LIB = xconnect
-+
- WATCHERS = domrach
-Index: src/objmgr/util/Makefile.util.lib
-===================================================================
---- src/objmgr/util/Makefile.util.lib (revision 439078)
-+++ src/objmgr/util/Makefile.util.lib (working copy)
-@@ -8,5 +8,7 @@
- SRC = weight sequence feature seqtitle create_defline obj_sniff seq_loc_util seq_align_util
- LIB = xobjutil
-
-+DLL_LIB = xobjmgr
-+
- WATCHERS = ucko vasilche
-
-Index: src/objtools/blast/seqdb_reader/Makefile.seqdb.lib
-===================================================================
---- src/objtools/blast/seqdb_reader/Makefile.seqdb.lib (revision 439078)
-+++ src/objtools/blast/seqdb_reader/Makefile.seqdb.lib (working copy)
-@@ -29,4 +29,6 @@
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = xobjmgr blastdb
-+
- WATCHERS = maning camacho
-Index: src/objtools/blast/services/Makefile.blast_services.lib
-===================================================================
---- src/objtools/blast/services/Makefile.blast_services.lib (revision 439078)
-+++ src/objtools/blast/services/Makefile.blast_services.lib (working copy)
-@@ -13,3 +13,4 @@
- CXXFLAGS = $(FAST_CXXFLAGS)
- LDFLAGS = $(FAST_LDFLAGS)
-
-+DLL_LIB = xnetblastcli xconnect
-Index: src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib
-===================================================================
---- src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib (revision 439078)
-+++ src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib (working copy)
-@@ -7,4 +7,6 @@
-
- ASN_DEP = blastdb seqset
-
-+DLL_LIB = seqdb
-+
- WATCHERS = camacho
-Index: src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib
-===================================================================
---- src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib (revision 439078)
-+++ src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib (working copy)
-@@ -7,4 +7,6 @@
-
- ASN_DEP = blastdb xnetblast
-
-+DLL_LIB = blast_services
-+
- WATCHERS = camacho
-Index: src/objtools/lds2/Makefile.lds2.lib
-===================================================================
---- src/objtools/lds2/Makefile.lds2.lib (revision 439078)
-+++ src/objtools/lds2/Makefile.lds2.lib (working copy)
-@@ -8,9 +8,9 @@
- SRC = lds2 lds2_db lds2_handlers
-
- # Dependencies for shared library
--#DLL_LIB = sqlitewrapp
-+DLL_LIB = sqlitewrapp $(COMPRESS_LIBS)
-
--LIBS = $(CMPRS_LIBS) $(ORIG_LIBS)
-+LIBS = $(SQLITE3_LIBS) $(CMPRS_LIBS) $(ORIG_LIBS)
-
- CPPFLAGS = $(SQLITE3_INCLUDE) $(CMPRS_INCLUDE) $(ORIG_CPPFLAGS)
-
-Index: src/objtools/readers/Makefile.xobjread.lib
-===================================================================
---- src/objtools/readers/Makefile.xobjread.lib (revision 439078)
-+++ src/objtools/readers/Makefile.xobjread.lib (working copy)
-@@ -19,5 +19,6 @@
- best_feat_finder source_mod_parser fasta_exception
-
-
--DLL_LIB = creaders
-+DLL_LIB = seqset $(SEQ_LIBS) pub general creaders xutil
-
-+
-Index: src/sample/app/cgi/Makefile.cgi_session_sample.app
-===================================================================
---- src/sample/app/cgi/Makefile.cgi_session_sample.app (revision 439078)
-+++ src/sample/app/cgi/Makefile.cgi_session_sample.app (working copy)
-@@ -11,7 +11,7 @@
- # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
-
- ### BEGIN COPIED SETTINGS
--LIB = xgridcgi xcgi xhtml xconnserv xconnect xutil xncbi
-+LIB = xgridcgi xcgi xhtml xconnserv xthrserv xconnect xutil xncbi
-
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
-Index: src/sample/app/netcache/Makefile.netcache_cgi_sample.app
-===================================================================
---- src/sample/app/netcache/Makefile.netcache_cgi_sample.app (revision 439078)
-+++ src/sample/app/netcache/Makefile.netcache_cgi_sample.app (working copy)
-@@ -4,7 +4,7 @@
- SRC = netcache_cgi_sample
-
- ### BEGIN COPIED SETTINGS
--LIB = xconnserv xconnect xcgi xhtml xutil xncbi
-+LIB = xconnserv xthrserv xconnect xcgi xhtml xutil xncbi
-
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
- ### END COPIED SETTINGS
-Index: src/serial/Makefile.serial.lib
-===================================================================
---- src/serial/Makefile.serial.lib (revision 439078)
-+++ src/serial/Makefile.serial.lib (working copy)
-@@ -19,3 +19,5 @@
- LIB = xser
-
- WATCHERS = gouriano
-+
-+DLL_LIB = xutil xncbi
-Index: src/sra/data_loaders/bam/test/Makefile.test_bam_loader.app
-===================================================================
---- src/sra/data_loaders/bam/test/Makefile.test_bam_loader.app (revision 439078)
-+++ src/sra/data_loaders/bam/test/Makefile.test_bam_loader.app (working copy)
-@@ -7,7 +7,8 @@
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
-
--LIB = ncbi_xloader_bam bamread $(BAM_LIBS) xobjreadex xobjutil test_boost $(OBJMGR_LIBS)
-+LIB = ncbi_xloader_bam bamread $(BAM_LIBS) \
-+ xobjreadex $(OBJREAD_LIBS) xobjutil test_boost $(OBJMGR_LIBS)
-
- LIBS = $(SRA_SDK_SYSLIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
-
-Index: src/sra/data_loaders/csra/test/Makefile.test_csra_loader.app
-===================================================================
---- src/sra/data_loaders/csra/test/Makefile.test_csra_loader.app (revision 439078)
-+++ src/sra/data_loaders/csra/test/Makefile.test_csra_loader.app (working copy)
-@@ -5,7 +5,8 @@
-
- CPPFLAGS = $(ORIG_CPPFLAGS) $(BOOST_INCLUDE)
-
--LIB = ncbi_xloader_csra $(SRAREAD_LIBS) xobjreadex xobjutil test_boost $(OBJMGR_LIBS)
-+LIB = ncbi_xloader_csra $(SRAREAD_LIBS) xobjreadex $(OBJREAD_LIBS) xobjutil \
-+ test_boost $(OBJMGR_LIBS)
-
- LIBS = $(SRA_SDK_SYSLIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
-
-Index: src/sra/readers/bam/test/Makefile.bam_test.app
-===================================================================
---- src/sra/readers/bam/test/Makefile.bam_test.app (revision 439078)
-+++ src/sra/readers/bam/test/Makefile.bam_test.app (working copy)
-@@ -9,7 +9,8 @@
- APP = bam_test
- SRC = bam_test
-
--LIB = bamread xobjreadex xobjutil xobjsimple $(OBJMGR_LIBS) $(BAM_LIBS)
-+LIB = bamread $(BAM_LIBS) xobjreadex $(OBJREAD_LIBS) xobjutil xobjsimple \
-+ $(OBJMGR_LIBS)
- LIBS = $(SRA_SDK_SYSLIBS) $(CMPRS_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
-
- REQUIRES = objects
-Index: src/sra/sdk/libs/vfs/Makefile.vfs.lib
-===================================================================
---- src/sra/sdk/libs/vfs/Makefile.vfs.lib (revision 16076)
-+++ src/sra/sdk/libs/vfs/Makefile.vfs.lib (working copy)
-@@ -8,6 +8,9 @@
- CPPFLAGS = -I$(srcdir) $(SRA_INCLUDE) $(Z_INCLUDE) $(BZ2_INCLUDE) \
- $(SRA_INTERNAL_CPPFLAGS) -D_LIBRARY -DALWAYS_ADD_EXE $(ORIG_CPPFLAGS)
-
--DLL_LIB = srapath$(DLL) kurl$(DLL) krypto$(DLL) kfg$(DLL) kfs$(DLL) klib$(DLL)
-+DLL_LIB = srapath$(FORCE_STATIC) kurl$(FORCE_STATIC) \
-+ krypto$(DLL) kfg$(DLL) kfs$(DLL) klib$(DLL)
-
-+LIBS = $(SRA_SDK_SYSLIBS)
-+
- LIB_OR_DLL = both
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-more-patches.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-more-patches.patch
deleted file mode 100644
index 449bbc5a9..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-more-patches.patch
+++ /dev/null
@@ -1,136 +0,0 @@
---- ncbi_cxx--12_0_0/include/common/config/ncbiconf_msvc.h.ori 2013/09/30 13:46:04 59961
-+++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_msvc.h 2013/09/30 14:10:44 59962
-@@ -62,10 +62,6 @@
- #define HAVE_SYS_TYPES_H 1
- #define HAVE_VSNPRINTF 1
-
--#if _MSC_VER >= 1600
--# define HAVE_IS_SORTED 1
--#endif
--
- #if _MSC_VER < 1500
- # define vsnprintf _vsnprintf
- #endif
-@@ -136,10 +132,6 @@
-
- #endif
-
--#if _MSC_VER >= 1600
--# define HAVE_NULLPTR 1
--#endif
--
- /* Windows XP and above */
- #define NCBI_WIN32_WINNT 0x0501
- #if !defined(_WIN32_WINNT)
---- ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h.ori 2013/09/30 13:46:04 59961
-+++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h 2013/09/30 14:10:44 59962
-@@ -258,9 +258,6 @@
- /* Define to 1 if you have `ios(_base)::register_callback'. */
- #define HAVE_IOS_REGISTER_CALLBACK 1
-
--/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
--/* #undef HAVE_IS_SORTED */
--
- /* Define to 1 if you have the `lchown' function. */
- /* #undef HAVE_LCHOWN */
-
-@@ -595,9 +592,6 @@
- /* Define to 1 if wxWidgets is available. */
- /* #undef HAVE_WXWIDGETS */
-
--/* Define to 1 if nullptr keyword is available. */
--/* #undef HAVE_NULLPTR */
--
- /* Define as const if the declaration of iconv() needs const. */
- #if MAC_OS_X_VERSION_MIN_REQUIRED >= 1050 /* MAC_OS_X_VERSION_10_5 */
- # define ICONV_CONST
---- ncbi_cxx--12_0_0/include/common/ncbiconf_impl.h.ori 2013/09/30 13:46:04 59961
-+++ ncbi_cxx--12_0_0/include/common/ncbiconf_impl.h 2013/09/30 14:10:44 59962
-@@ -115,6 +115,11 @@
- || defined(__GXX_EXPERIMENTAL_CPP0X__)
- # define NCBI_HAVE_CXX11 1
- # endif
-+# if defined(NCBI_HAVE_CXX11) \
-+ || (defined(NCBI_COMPILER_MSVC) && _MSC_VER >= 1600)
-+# define HAVE_IS_SORTED 1
-+# define HAVE_NULLPTR 1
-+# endif
- #endif
-
- #include <common/ncbi_skew_guard.h>
---- ncbi_cxx--12_0_0/src/build-system/config.h.in.ori 2013/09/30 13:46:04 59961
-+++ ncbi_cxx--12_0_0/src/build-system/config.h.in 2013/09/30 14:10:44 59962
-@@ -179,9 +179,6 @@
- /* Define to 1 if you have `ios(_base)::register_callback'. */
- #undef HAVE_IOS_REGISTER_CALLBACK
-
--/* Define to 1 if <algorithm> supplies `std::is_sorted<>'. */
--#undef HAVE_IS_SORTED
--
- /* Define to 1 if you have the `lchown' function. */
- #undef HAVE_LCHOWN
-
-@@ -391,9 +388,6 @@
- /* Define to 1 if `min'/`max' templates are not implemented. */
- #undef HAVE_NO_MINMAX_TEMPLATE
-
--/* Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword. */
--#undef HAVE_NULLPTR
--
- /* Define to 1 if ODBC libraries are available. */
- #undef HAVE_ODBC
-
---- ncbi_cxx--12_0_0/src/build-system/configure.ac.ori 2013/09/30 13:46:04 59961
-+++ ncbi_cxx--12_0_0/src/build-system/configure.ac 2013/09/30 14:10:44 59962
-@@ -3351,17 +3351,6 @@
- fi
-
-
--AC_CACHE_CHECK([for std::is_sorted<> in <algorithm>], ncbi_cv_func_is_sorted,
-- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM(
-- [[#include <algorithm>]],
-- [[int a[2]; return std::is_sorted(a, a+2) ? 0 : 1;]])],
-- [ncbi_cv_func_is_sorted=yes], [ncbi_cv_func_is_sorted=no])])
--if test "$ncbi_cv_func_is_sorted" = yes; then
-- AC_DEFINE(HAVE_IS_SORTED, 1,
-- [Define to 1 if <algorithm> supplies `std::is_sorted<>'.])
--fi
--
--
-
- AC_CACHE_CHECK([for SysV semaphores], ncbi_cv_sys_semaphores,
- AC_LINK_IFELSE([AC_LANG_PROGRAM([#include <sys/types.h>
-@@ -3498,7 +3487,7 @@
- AC_CACHE_CHECK([whether the C compiler supports C99 restrict],
- ncbi_cv_c_restrict,
- [ncbi_cv_c_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_c_restrict" = "no" || break
- AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
- [ncbi_cv_c_restrict=$restrict], [])
-@@ -3518,7 +3507,7 @@
- AC_CACHE_CHECK([whether the C++ compiler supports C99 restrict],
- ncbi_cv_cxx_restrict,
- [ncbi_cv_cxx_restrict=no
-- for restrict in restrict __restrict__ __restrict; do
-+ for restrict in __restrict__ __restrict restrict; do
- test "$ncbi_cv_cxx_restrict" = "no" || break
- AC_COMPILE_IFELSE([AC_LANG_SOURCE([void f(int * $restrict p);])],
- [ncbi_cv_cxx_restrict=$restrict], [])
-@@ -3623,14 +3612,6 @@
- unaligned addresses.])
- fi
-
--AC_CACHE_CHECK([whether $CXX supports C++0x nullptr], ncbi_cv_cxx_nullptr,
-- [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([], [[void * p = nullptr;]])],
-- [ncbi_cv_cxx_nullptr=yes], [ncbi_cv_cxx_nullptr=no])])
--if test "$ncbi_cv_cxx_nullptr" = yes; then
-- AC_DEFINE(HAVE_NULLPTR, 1,
-- [Define to 1 if your C++ compiler supports the C++0x `nullptr' keyword.])
--fi
--
- ### Check for the availability of other packages
- ### --------------------------------------------
-
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-never_build_test_boost.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-never_build_test_boost.patch
deleted file mode 100644
index 68baea046..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-never_build_test_boost.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--12_0_0/src/corelib/Makefile.in.ori 2016-12-01 20:28:33.239758102 +0100
-+++ ncbi_cxx--12_0_0/src/corelib/Makefile.in 2016-12-01 20:28:46.330110659 +0100
-@@ -7,7 +7,7 @@
- #################################
-
- USR_PROJ = precompile
--LIB_PROJ = corelib test_mt test_boost
-+LIB_PROJ = corelib test_mt
- SUB_PROJ = test
- PROJ_TAG = core
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
deleted file mode 100644
index 9047c3384..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-support-autoconf-2.60.patch
+++ /dev/null
@@ -1,296 +0,0 @@
---- ncbi_cxx--12_0_0/src/build-system/aclocal.m4.ori 2014/05/05 12:38:59 62744
-+++ ncbi_cxx--12_0_0/src/build-system/aclocal.m4 2014/05/05 13:59:33 62745
-@@ -1,126 +1,44 @@
--# Hacked up in various ways, since Autoconf's version doesn't quite
--# suit our (unusual) conventions. (Originally from status.m4)
--m4_define([_AC_SRCPATHS],
--[#ac_builddir=. # Useless!
--ac_builddir=$builddir
--dnl Base source directories on path to *input* file.
--if test -n "$ac_file_in"; then
-- ac_dir_in=`AS_DIRNAME(["$ac_file_in"])`
-+# Autoconf's _AC_SRCDIRS (from status.m4; historically _AC_SRCPATHS)
-+# doesn't quite suit the C++ Toolkit's conventions; tweak it accordingly.
-+m4_copy([_AC_SRCDIRS], [NCBI_ORIG__AC_SRCDIRS])
-+m4_define([_AC_SRCDIRS],
-+[# Base source directories on path to *input* file.
-+if test -n "$ac_f"; then
-+ ac_dir_in=`AS_DIRNAME(["$ac_f"])`
- else
- ac_dir_in=$1
- fi
-
--if test $ac_dir_in != .; then
-- ac_dir_suffix=`echo $ac_dir_in | sed 's,^\.[[\\/]],,'`
-- # A "../" for each directory in $ac_dir_suffix.
-- ac_top_builddir=../`echo "$ac_dir_suffix" | sed 's,/[[^\\/]]*,../,g'`
--else
-- ac_dir_suffix= ac_top_builddir=
--fi
-+NCBI_ORIG__AC_SRCDIRS(["$ac_dir_in"])
-
--case $srcdir in
-- .) # No --srcdir option. We are building in place.
-- ac_srcdir=.
-- if test -z "$ac_top_builddir"; then
-- ac_top_srcdir=.
-- else
-- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
-- fi ;;
-- [[\\/]]* | ?:[[\\/]]* ) # Absolute path.
-- ac_srcdir=$srcdir/$ac_dir_suffix;
-- ac_top_srcdir=$srcdir ;;
-- *) # Relative path.
-- ac_srcdir=$ac_top_builddir$srcdir/$ac_dir_suffix
-- ac_top_srcdir=$ac_top_builddir$srcdir ;;
--esac
--# Do not use `cd foo && pwd` to compute absolute paths, because
--# the directories may not exist.
--AS_SET_CATFILE([ac_abs_builddir], [$builddir], [$1])
--AS_SET_CATFILE([ac_abs_top_builddir],
-- [$ac_abs_builddir], [${ac_top_builddir}.])
--AS_SET_CATFILE([ac_abs_top_srcdir], [$ac_dir_in], [$real_srcdir])
--AS_SET_CATFILE([ac_abs_srcdir], [$ac_abs_top_srcdir], [$ac_dir_suffix])
--])# _AC_SRCPATHS
--
--
--# Copied from autoconf 2.59 (m4sh.m4), but rearranged to make bash a
--# last resort due to issues with sourcing .bashrc.
--m4_define([_AS_LINENO_PREPARE],
--[_AS_LINENO_WORKS || {
-- # Find who we are. Look in the path if we contain no path at all
-- # relative or not.
-- case $[0] in
-- *[[\\/]]* ) as_myself=$[0] ;;
-- *) _AS_PATH_WALK([],
-- [test -r "$as_dir/$[0]" && as_myself=$as_dir/$[0] && break])
-- ;;
-- esac
-- # We did not find ourselves, most probably we were run as `sh COMMAND'
-- # in which case we are not to be found in the path.
-- if test "x$as_myself" = x; then
-- as_myself=$[0]
-- fi
-- if test ! -f "$as_myself"; then
-- AS_ERROR([cannot find myself; rerun with an absolute path])
-- fi
-- case $CONFIG_SHELL in
-- '')
-- AS_UNSET(ZSH_VERSION)
-- for as_base in sh ksh sh5 bash; do
-- _AS_PATH_WALK([/bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH],
-- [case $as_dir in
-- /*)
-- if ("$as_dir/$as_base" -c \
-- 'test -z "$ZSH_VERSION" && { _AS_LINENO_WORKS; }') 2>/dev/null
-- then
-- AS_UNSET(BASH_ENV)
-- AS_UNSET(ENV)
-- CONFIG_SHELL=$as_dir/$as_base
-- export CONFIG_SHELL
-- exec "$CONFIG_SHELL" "$[0]" ${1+"$[@]"}
-- fi;;
-- esac
-- done]);;
-- esac
--
-- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
-- # uniformly replaced by the line number. The first 'sed' inserts a
-- # line-number line before each line; the second 'sed' does the real
-- # work. The second script uses 'N' to pair each line-number line
-- # with the numbered line, and appends trailing '-' during
-- # substitution so that $LINENO is not a special case at line end.
-- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
-- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
-- sed '=' <$as_myself |
-- sed '
-- N
-- s,$,-,
-- : loop
-- s,^\([['$as_cr_digits']]*\)\(.*\)[[$]]LINENO\([[^'$as_cr_alnum'_]]\),\1\2\1\3,
-- t loop
-- s,-$,,
-- s,^[['$as_cr_digits']]*\n,,
-- ' >$as_me.lineno &&
-- chmod +x $as_me.lineno ||
-- AS_ERROR([cannot create $as_me.lineno; rerun with a POSIX shell])
--
-- # Don't try to exec as it changes $[0], causing all sort of problems
-- # (the dirname of $[0] is not the place where we might find the
-- # original and so on. Autoconf is especially sensible to this).
-- . ./$as_me.lineno
-- # Exit status is that of the last command.
-- exit
--}
--])# _AS_LINENO_PREPARE
-+ac_builddir=$builddir
-+])
-+
-+
-+# _AS_DETECT_BETTER_SHELL and its helper _AS_RUN (from m4sh.m4; both
-+# historically part of _AS_LINENO_PREPARE) also need tweaking, to make
-+# bash a last resort due to issues with sourcing .bashrc while entirely
-+# avoiding zsh, which passes itself off as ksh on some systems but runs
-+# parent shells' exit handlers from subshells, resulting in premature
-+# cleanup of temporary files (notably confdefs.h).
-+m4_copy([_AS_DETECT_BETTER_SHELL], [NCBI_ORIG__AS_DETECT_BETTER_SHELL])
-+m4_copy([_AS_RUN], [NCBI_ORIG___AS_RUN])
-+
-+m4_define([_AS_DETECT_BETTER_SHELL],
-+ [patsubst(m4_defn([NCBI_ORIG__AS_DETECT_BETTER_SHELL]),
-+ [sh bash ksh sh5], [sh ksh sh5 bash])])
-+m4_define([_AS_RUN],
-+[m4_divert_once([M4SH-SANITIZE], [AS_UNSET(ZSH_VERSION)])dnl
-+NCBI_ORIG___AS_RUN([test -z "${ZSH_VERSION+set}" || exit $?; $1], [$2])])
-
-
- # One more hack: suppress PACKAGE_*, as we don't use them and some
- # third-party libraries expose their corresponding settings, leading
- # to preprocessor warnings.
--m4_define([NCBI_ORIG_ACDU], m4_defn([AC_DEFINE_UNQUOTED]))
-+m4_copy([AC_DEFINE_UNQUOTED], [NCBI_ORIG_AC_DEFINE_UNQUOTED])
- m4_define([AC_DEFINE_UNQUOTED],
- [ifelse(m4_substr([$1], 0, 8), [PACKAGE_], [],
-- [NCBI_ORIG_ACDU($@)])])
-+ [NCBI_ORIG_AC_DEFINE_UNQUOTED($@)])])
-
-
- AC_DEFUN(NCBI_FIX_DIR,
-@@ -158,7 +76,7 @@
- AC_MSG_WARN([Proceeding without questions per --without-caution]) ;;
- * )
- echo "$1 [[y/N]]"
-- read answer
-+ read answer <& AS_ORIGINAL_STDIN_FD
- case "$answer" in
- [[Yy]]* ) AC_MSG_WARN([Proceeding at your own risk...]) ;;
- * ) AC_MSG_ERROR([Configuration has been canceled by user.]) ;;
---- ncbi_cxx--12_0_0/src/build-system/configure.ac.ori 2014/05/05 12:38:59 62744
-+++ ncbi_cxx--12_0_0/src/build-system/configure.ac 2014/05/05 13:59:33 62745
-@@ -38,7 +38,7 @@
- #
- #############################################################################
-
--AC_PREREQ(2.59)
-+AC_PREREQ(2.60)
-
- dnl Early setup, most crucially for locking. The diversion magic lets
- dnl this occur before AC_INIT, which already interferes with other
-@@ -493,6 +493,10 @@
- [***** See also HTML documentation in ./doc/index.html *****])
-
-
-+AC_DIVERT_PUSH(PARSE_ARGS)
-+dnl As of Autoconf 2.60, this needs to run too early for config.log,
-+dnl to which AC_MSG_ERROR normally copies its output, to be available.
-+m4_rename([AS_MESSAGE_LOG_FD], [NCBI_ORIG_ASMLFD])
- #### Check the passed arguments against the list of available ones
- x_with_list="\
- debug max-debug symbols optimization profiling tcheck dll static static-exe \
-@@ -564,7 +568,7 @@
- | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \
- | --x-includes=* | --x-libraries=* | --with-3psw=* \
- | --target=* | --with-runpath=* | --with-relative-runpath=* \
-- | --no-create | --no-recursion)
-+ | --help | --no-create | --no-recursion)
- ;;
-
- * )
-@@ -572,6 +576,8 @@
- ;;
- esac
- done
-+m4_rename([NCBI_ORIG_ASMLFD], [AS_MESSAGE_LOG_FD])
-+AC_DIVERT_POP
-
-
- if test "$with_gbench" = "yes" ; then
-@@ -2176,7 +2182,7 @@
- fi
-
- AC_PATH_PROG(TOUCH, touch, [], /bin:/usr/bin:$PATH)
--AC_PATH_PROG(GREP, grep)
-+dnl AC_PATH_PROG(GREP, grep)
- AC_PROG_EGREP
- AC_MSG_CHECKING([how to run $EGREP quietly])
- if test -z "`echo foo | $EGREP -q fo+ 2>>config.log || echo $?`"; then
---- ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h.ori 2014/05/05 14:10:55 62749
-+++ ncbi_cxx--12_0_0/include/common/config/ncbiconf_xcode.h 2014/05/05 14:23:49 62750
-@@ -694,7 +694,7 @@
- /* Define to empty if `const' does not conform to ANSI C. */
- /* #undef const */
-
--/* Define to `unsigned' if <sys/types.h> does not define. */
-+/* Define to `unsigned int' if <sys/types.h> does not define. */
- /* #undef size_t */
-
- /*
---- ncbi_cxx--12_0_0/src/build-system/config.h.in.ori 2014/05/05 14:10:55 62749
-+++ ncbi_cxx--12_0_0/src/build-system/config.h.in 2014/05/05 14:23:49 62750
-@@ -802,37 +802,37 @@
- by a signal. */
- #undef SELECT_UPDATES_TIMEOUT
-
--/* The size of a `char', as computed by sizeof. */
-+/* The size of `char', as computed by sizeof. */
- #undef SIZEOF_CHAR
-
--/* The size of a `double', as computed by sizeof. */
-+/* The size of `double', as computed by sizeof. */
- #undef SIZEOF_DOUBLE
-
--/* The size of a `float', as computed by sizeof. */
-+/* The size of `float', as computed by sizeof. */
- #undef SIZEOF_FLOAT
-
--/* The size of a `int', as computed by sizeof. */
-+/* The size of `int', as computed by sizeof. */
- #undef SIZEOF_INT
-
--/* The size of a `long', as computed by sizeof. */
-+/* The size of `long', as computed by sizeof. */
- #undef SIZEOF_LONG
-
--/* The size of a `long double', as computed by sizeof. */
-+/* The size of `long double', as computed by sizeof. */
- #undef SIZEOF_LONG_DOUBLE
-
--/* The size of a `long long', as computed by sizeof. */
-+/* The size of `long long', as computed by sizeof. */
- #undef SIZEOF_LONG_LONG
-
--/* The size of a `short', as computed by sizeof. */
-+/* The size of `short', as computed by sizeof. */
- #undef SIZEOF_SHORT
-
--/* The size of a `size_t', as computed by sizeof. */
-+/* The size of `size_t', as computed by sizeof. */
- #undef SIZEOF_SIZE_T
-
--/* The size of a `void*', as computed by sizeof. */
-+/* The size of `void*', as computed by sizeof. */
- #undef SIZEOF_VOIDP
-
--/* The size of a `__int64', as computed by sizeof. */
-+/* The size of `__int64', as computed by sizeof. */
- #undef SIZEOF___INT64
-
- /* Define to 1 if the stack grows down. */
-@@ -873,5 +873,5 @@
- /* Define to empty if `const' does not conform to ANSI C. */
- #undef const
-
--/* Define to `unsigned' if <sys/types.h> does not define. */
-+/* Define to `unsigned int' if <sys/types.h> does not define. */
- #undef size_t
---- ncbi_cxx--12_0_0/src/build-system/aclocal.m4.ori 2014/05/06 13:12:18 62759
-+++ ncbi_cxx--12_0_0/src/build-system/aclocal.m4 2014/05/06 13:42:48 62760
-@@ -11,6 +11,7 @@
-
- NCBI_ORIG__AC_SRCDIRS(["$ac_dir_in"])
-
-+AS_SET_CATFILE([ac_abs_top_srcdir], [$ac_dir_in], [$real_srcdir])
- ac_builddir=$builddir
- ])
-
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-configure.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-configure.patch
deleted file mode 100644
index b2d887c92..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-configure.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- ncbi_cxx--12_0_0/src/build-system/configure.ori 2014-06-25 23:47:05.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/configure 2014-06-25 23:52:35.000000000 +0200
-@@ -3201,6 +3203,17 @@
- *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
- esac
- fi
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ { { echo "$as_me:$LINENO: error: unable to read requested projects file \"$abs_projects\"." >&5
-+echo "$as_me: error: unable to read requested projects file \"$abs_projects\"." >&2;}
-+ { (exit 1); exit 1; }; }
-+fi
-
- #### Always define this
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-annotwriter-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-annotwriter-linking.patch
deleted file mode 100644
index c9428084d..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-annotwriter-linking.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-Index: c++.18.0.0/src/app/annotwriter/Makefile.annotwriter.app
-===================================================================
---- c++.18.0.0/src/app/annotwriter/Makefile.annotwriter.app (revision 523253)
-+++ c++.18.0.0/src/app/annotwriter/Makefile.annotwriter.app (working copy)
-@@ -8,8 +8,8 @@
-
- APP = annotwriter
- SRC = annotwriter
--LIB = xobjwrite variation_utils $(OBJREAD_LIBS) xalnmgr xobjutil \
-- gbseq entrez2cli entrez2 tables $(OBJMGR_LIBS)
-+LIB = xobjwrite $(XFORMAT_LIBS) variation_utils $(OBJREAD_LIBS) xalnmgr \
-+ xobjutil entrez2cli entrez2 tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-blast_sample-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-blast_sample-linking.patch
deleted file mode 100644
index 7a158dc5c..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-blast_sample-linking.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-Index: c++.18.0.0/src/sample/app/blast/Makefile.blast_sample.app
-===================================================================
---- c++.18.0.0/src/sample/app/blast/Makefile.blast_sample.app (revision 523253)
-+++ c++.18.0.0/src/sample/app/blast/Makefile.blast_sample.app (working copy)
-@@ -12,7 +12,7 @@
- # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
-
- ### BEGIN COPIED SETTINGS
--LIB_ = xobjsimple $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = xobjsimple $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = $(LIB_:%=%$(STATIC))
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
-Index: c++.18.0.0/src/sample/app/blast/Makefile.vsrun_sample.app
-===================================================================
---- c++.18.0.0/src/sample/app/blast/Makefile.vsrun_sample.app (revision 523253)
-+++ c++.18.0.0/src/sample/app/blast/Makefile.vsrun_sample.app (working copy)
-@@ -12,7 +12,7 @@
- # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
-
- ### BEGIN COPIED SETTINGS
--LIB_ = xobjsimple $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = xobjsimple $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = $(LIB_:%=%$(STATIC))
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-compartp-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-compartp-linking.patch
deleted file mode 100644
index 749c2e57f..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-compartp-linking.patch
+++ /dev/null
@@ -1,29 +0,0 @@
-Index: c++.18.0.0/src/app/compart/Makefile.compart.app
-===================================================================
---- c++.18.0.0/src/app/compart/Makefile.compart.app (revision 523253)
-+++ c++.18.0.0/src/app/compart/Makefile.compart.app (working copy)
-@@ -5,8 +5,8 @@
- APP = compart
- SRC = compart
-
--LIB = xalgoalignsplign xalgoalignutil xalgoalignnw xqueryparse \
-- $(BLAST_LIBS:%=%$(STATIC)) \
-+LIB = xalgoalignsplign xalgoalignutil xalgoalignnw xalgoseq taxon1 \
-+ $(BLAST_LIBS:%=%$(STATIC)) xqueryparse xregexp $(PCRE_LIB) \
- $(OBJMGR_LIBS:%=%$(STATIC))
-
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-Index: c++.18.0.0/src/app/compart/Makefile.compartp.app
-===================================================================
---- c++.18.0.0/src/app/compart/Makefile.compartp.app (revision 523253)
-+++ c++.18.0.0/src/app/compart/Makefile.compartp.app (working copy)
-@@ -5,7 +5,8 @@
- APP = compartp
- SRC = compartp
-
--LIB = prosplign xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
-+LIB = prosplign xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) xqueryparse \
-+ xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(PCRE_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
deleted file mode 100644
index e495c9645..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app.ori 2017-03-23 19:24:31.534280319 +0100
-+++ ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app 2017-03-23 19:25:14.395360214 +0100
-@@ -2,7 +2,7 @@
-
- APP = convert_seq
- SRC = convert_seq
--LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite \
-+LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite variation_utils \
- $(OBJREAD_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil tables xregexp \
- $(PCRE_LIB) $(OBJMGR_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-hfilter-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-hfilter-linking.patch
deleted file mode 100644
index 63bbcc45a..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-hfilter-linking.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-Index: c++.18.0.0/src/app/hfilter/Makefile.hfilter.app
-===================================================================
---- c++.18.0.0/src/app/hfilter/Makefile.hfilter.app (revision 523253)
-+++ c++.18.0.0/src/app/hfilter/Makefile.hfilter.app (working copy)
-@@ -5,7 +5,8 @@
- APP = hfilter
- SRC = hitfilter_app
-
--LIB = xalgoalignutil $(BLAST_LIBS) xqueryparse $(OBJMGR_LIBS)
-+LIB = xalgoalignutil xalgoseq taxon1 $(BLAST_LIBS) \
-+ xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-igblast-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-igblast-linking.patch
deleted file mode 100644
index ffd3f897f..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-igblast-linking.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-Index: c++.18.0.0/src/app/igblast/Makefile.igblastn.app
-===================================================================
---- c++.18.0.0/src/app/igblast/Makefile.igblastn.app (revision 523253)
-+++ c++.18.0.0/src/app/igblast/Makefile.igblastn.app (working copy)
-@@ -2,7 +2,8 @@
-
- APP = igblastn
- SRC = igblastn_app
--LIB_ = xalgoalignutil $(BLAST_INPUT_LIBS) xqueryparse $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = xalgoalignutil $(BLAST_INPUT_LIBS) xqueryparse $(BLAST_LIBS) \
-+ xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util igblast $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/igblast/Makefile.igblastp.app
-===================================================================
---- c++.18.0.0/src/app/igblast/Makefile.igblastp.app (revision 523253)
-+++ c++.18.0.0/src/app/igblast/Makefile.igblastp.app (working copy)
-@@ -2,7 +2,8 @@
-
- APP = igblastp
- SRC = igblastp_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = xalgoalignutil $(BLAST_INPUT_LIBS) xqueryparse $(BLAST_LIBS) \
-+ xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util igblast $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-rmblastn-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-rmblastn-linking.patch
deleted file mode 100644
index fce7263b2..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-rmblastn-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/rmblastn/Makefile.rmblastn.app.ori 2017-03-26 18:49:50.431994978 +0200
-+++ ncbi_cxx--18_0_0/src/app/rmblastn/Makefile.rmblastn.app 2017-03-26 18:50:11.222552131 +0200
-@@ -2,7 +2,7 @@
-
- APP = rmblastn
- SRC = rmblastn_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch
deleted file mode 100644
index 222cb2c06..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch
+++ /dev/null
@@ -1,13 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app.ori 2017-03-27 00:41:58.742206850 +0200
-+++ ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app 2017-03-27 00:43:13.142206236 +0200
-@@ -12,8 +12,8 @@
-
- LIB = xdiscrepancy xalgophytree fastme prosplign xalgoalignutil xalgoseq xmlwrapp \
- xvalidate xobjwrite xobjreadex valerr biotree macro \
-- $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) id2cli \
-- xregexp $(PCRE_LIB) $(SRAREAD_LIBS) $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS)
-+ $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) taxon1 id2cli \
-+ xregexp $(PCRE_LIB) xqueryparse $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS)
-
- LIBS = $(LIBXSLT_LIBS) $(DATA_LOADERS_UTIL_LIBS) $(LIBXML_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) \
- $(SRA_SDK_SYSLIBS) \
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-tls-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-tls-linking.patch
deleted file mode 100644
index 541dc2514..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-tls-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/tls/Makefile.tls.app.ori 2017-03-27 02:33:36.312151540 +0200
-+++ ncbi_cxx--18_0_0/src/app/tls/Makefile.tls.app 2017-03-27 02:34:19.372151184 +0200
-@@ -10,7 +10,7 @@
- SRC = tls
-
- LIB = $(OBJEDIT_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil \
-- xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-+ xregexp $(PCRE_LIB) tables $(OBJMGR_LIBS)
-
- LIBS = $(PCRE_LIBS) \
- $(NETWORK_LIBS) $(CMPRS_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-vecscreen-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-vecscreen-linking.patch
deleted file mode 100644
index 898e3a70b..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-vecscreen-linking.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-Index: c++.18.0.0/src/app/vecscreen/Makefile.vecscreen.app
-===================================================================
---- c++.18.0.0/src/app/vecscreen/Makefile.vecscreen.app (revision 523253)
-+++ c++.18.0.0/src/app/vecscreen/Makefile.vecscreen.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = vecscreen
- SRC = vecscreen_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = $(LIB_:%=%$(STATIC))
- # FIXME: do we need blast_app_util
- #LIB = blast_app_util $(LIB_:%=%$(STATIC))
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch
deleted file mode 100644
index e9dd1f710..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch
+++ /dev/null
@@ -1,130 +0,0 @@
-Index: c++.18.0.0/src/app/blast/Makefile.blast_formatter.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.blast_formatter.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.blast_formatter.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = blast_formatter
- SRC = blast_formatter
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.blastp.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.blastp.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.blastp.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = blastp
- SRC = blastp_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.blastx.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.blastx.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.blastx.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = blastx
- SRC = blastx_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.deltablast.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.deltablast.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.deltablast.app (working copy)
-@@ -1,7 +1,7 @@
-
- APP = deltablast
- SRC = deltablast_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.psiblast.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.psiblast.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.psiblast.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = psiblast
- SRC = psiblast_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.rpsblast.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.rpsblast.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.rpsblast.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = rpsblast
- SRC = rpsblast_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.rpstblastn.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.rpstblastn.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.rpstblastn.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = rpstblastn
- SRC = rpstblastn_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.seedtop.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.seedtop.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.seedtop.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = seedtop
- SRC = seedtop_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.tblastn.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.tblastn.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.tblastn.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = tblastn
- SRC = tblastn_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.tblastx.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.tblastx.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.tblastx.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = tblastx
- SRC = tblastx_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-install.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-install.patch
deleted file mode 100644
index 97e845fdb..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-install.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--12_0_0/src/build-system/Makefile.in.top.ori 2014-06-26 22:49:49.000000000 +0200
-+++ ncbi_cxx--12_0_0/src/build-system/Makefile.in.top 2014-06-26 22:50:57.000000000 +0200
-@@ -48,7 +48,7 @@
- for x in *.a; do ln -s "$$x" "`basename \"$$x\" .a`-static.a"; done
- cd $(includedir0) && find * -name CVS -prune -o -print |\
- cpio -pd $(pincludedir)
-- $(INSTALL) -m 644 $(incdir)/* $(pincludedir)
-+ $(INSTALL) -m 644 $(incdir)/*.* $(pincludedir)
- ## set up appropriate build and status directories somewhere under $(libdir)?
-
- install-gbench:
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-ncfetch-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-ncfetch-linking.patch
deleted file mode 100644
index aacb20a6c..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-ncfetch-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/grid/util/Makefile.ncfetch.app.ori 2017-03-23 21:12:52.028724998 +0100
-+++ ncbi_cxx--18_0_0/src/app/grid/util/Makefile.ncfetch.app 2017-03-23 21:13:30.079737366 +0100
-@@ -5,7 +5,7 @@
- APP = ncfetch.cgi
- SRC = ncfetch
-
--LIB = xcgi xconnserv xconnect xutil xncbi
-+LIB = xcgi xconnserv xthrserv xconnect xutil xncbi
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
- WATCHERS = sadyrovr
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netcache_cgi_sample-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netcache_cgi_sample-linking.patch
deleted file mode 100644
index e074046cf..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netcache_cgi_sample-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app.ori 2017-03-23 21:16:18.824226906 +0100
-+++ ncbi_cxx--18_0_0/src/sample/app/netcache/Makefile.netcache_cgi_sample.app 2017-03-23 21:16:50.085058615 +0100
-@@ -4,7 +4,7 @@
- SRC = netcache_cgi_sample
-
- ### BEGIN COPIED SETTINGS
--LIB = xconnserv xconnect xcgi xhtml xutil xncbi
-+LIB = xconnserv xthrserv xconnect xcgi xhtml xutil xncbi
-
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
- ### END COPIED SETTINGS
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netstorage_gc-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netstorage_gc-linking.patch
deleted file mode 100644
index f237a86d8..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-netstorage_gc-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/netstorage/utils/Makefile.netstorage_gc.app.ori 2017-03-23 21:22:14.463688886 +0100
-+++ ncbi_cxx--18_0_0/src/app/netstorage/utils/Makefile.netstorage_gc.app 2017-03-23 21:22:48.854603873 +0100
-@@ -10,7 +10,7 @@
- REQUIRES = MT Linux
-
-
--LIB = netstorage ncbi_xcache_netcache xconnserv \
-+LIB = netstorage ncbi_xcache_netcache xconnserv xthrserv \
- $(SDBAPI_LIB) xconnect connssl xutil xncbi
- LIBS = $(SDBAPI_LIBS) $(NETWORK_LIBS) $(GNUTLS_LIBS) $(CMPRS_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-sample-app-cgi-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-sample-app-cgi-linking.patch
deleted file mode 100644
index c45d4ad96..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-sample-app-cgi-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app.ori 2017-03-22 23:52:58.984696074 +0100
-+++ ncbi_cxx--18_0_0/src/sample/app/cgi/Makefile.cgi_session_sample.app 2017-03-22 23:53:54.746258126 +0100
-@@ -11,7 +11,7 @@
- # the lines reading "### BEGIN/END COPIED SETTINGS" in any way.
-
- ### BEGIN COPIED SETTINGS
--LIB = xgridcgi xcgi xhtml xconnserv xconnect xutil xncbi
-+LIB = xgridcgi xcgi xhtml xconnserv xthrserv xconnect xutil xncbi
-
- LIBS = $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-speedtest-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-speedtest-linking.patch
deleted file mode 100644
index 9435e8b6a..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-speedtest-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/speedtest/Makefile.speedtest.app.ori 2017-03-23 21:41:31.084603405 +0100
-+++ ncbi_cxx--18_0_0/src/app/speedtest/Makefile.speedtest.app 2017-03-23 21:45:47.601428174 +0100
-@@ -8,7 +8,7 @@
-
- APP = speedtest
- SRC = speedtest
--LIB = prosplign xalgoalignutil xcleanup taxon3 valid valerr $(BLAST_LIBS) \
-+LIB = prosplign xalgoalignutil taxon1 xalgoseq xcleanup taxon3 valid valerr $(BLAST_LIBS) \
- xqueryparse xregexp $(PCRE_LIB) $(OBJMGR_LIBS:%=%$(STATIC))
-
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(PCRE_LIBS) $(ORIG_LIBS)
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-splign-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-splign-linking.patch
deleted file mode 100644
index 56f213f08..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-splign-linking.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/splign/Makefile.splign.app.ori 2017-03-23 22:08:16.937327984 +0100
-+++ ncbi_cxx--18_0_0/src/app/splign/Makefile.splign.app 2017-03-23 22:09:19.208984755 +0100
-@@ -12,7 +12,7 @@
- LIB = xalgoalignsplign xalgoalignutil xalgoalignnw \
- $(BLAST_DB_DATA_LOADER_LIBS) \
- ncbi_xloader_lds2 lds2 sqlitewrapp \
-- xqueryparse xalgoseq $(PCRE_LIB) \
-+ xqueryparse xalgoseq taxon1 xregexp $(PCRE_LIB) \
- $(BLAST_LIBS:%=%$(STATIC)) \
- $(OBJMGR_LIBS:%=%$(STATIC))
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
deleted file mode 100644
index 49a4adb4e..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-Index: c++.18.0.0/src/app/srcchk/Makefile.srcchk.app
-===================================================================
---- c++.18.0.0/src/app/srcchk/Makefile.srcchk.app (revision 523253)
-+++ c++.18.0.0/src/app/srcchk/Makefile.srcchk.app (working copy)
-@@ -8,8 +8,8 @@
-
- APP = srcchk
- SRC = srcchk
--LIB = xobjwrite variation_utils $(OBJREAD_LIBS) xalnmgr xobjutil \
-- gbseq entrez2cli entrez2 tables $(OBJMGR_LIBS)
-+LIB = xobjwrite $(XFORMAT_LIBS) variation_utils $(OBJREAD_LIBS) xalnmgr \
-+ xobjutil entrez2cli entrez2 tables xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
-
- LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
deleted file mode 100644
index f0a27d85a..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- work/ncbi_cxx--18_0_0/src/connect/Makefile.xthrserv.lib.ori 2017-03-17 22:33:51.569635396 +0100
-+++ ncbi_cxx--18_0_0/src/connect/Makefile.xthrserv.lib 2017-03-17 22:33:58.349811199 +0100
-@@ -4,6 +4,6 @@
- LIB = xthrserv
- PROJ_TAG = core
- LIBS = $(NETWORK_LIBS)
--DLL_LIB = xutil xconnect
-+DLL_LIB = xncbi xutil xconnect
-
- WATCHERS = vakatov
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-xobjread.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-xobjread.patch
deleted file mode 100644
index 3c1cb0a9e..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-undefined-xobjread.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--18_0_0/src/app/asn2fasta/Makefile.asn2fasta.app.ori 2016-06-24 16:55:25.000000000 +0200
-+++ ncbi_cxx--18_0_0/src/app/asn2fasta/Makefile.asn2fasta.app 2017-03-21 14:07:31.070364301 +0100
-@@ -9,7 +9,7 @@
- APP = asn2fasta
- SRC = asn2fasta
- LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) \
-- xobjwrite xobjread $(XFORMAT_LIBS) xalnmgr xobjutil valerr xregexp \
-+ xobjwrite variation_utils $(OBJREAD_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil valerr xregexp \
- ncbi_xdbapi_ftds dbapi $(ncbi_xreader_pubseqos2) $(FTDS_LIB) \
- entrez2cli entrez2 tables $(OBJMGR_LIBS) $(PCRE_LIB)
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-never_build_test_boost.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-never_build_test_boost.patch
deleted file mode 100644
index 68baea046..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-never_build_test_boost.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ncbi_cxx--12_0_0/src/corelib/Makefile.in.ori 2016-12-01 20:28:33.239758102 +0100
-+++ ncbi_cxx--12_0_0/src/corelib/Makefile.in 2016-12-01 20:28:46.330110659 +0100
-@@ -7,7 +7,7 @@
- #################################
-
- USR_PROJ = precompile
--LIB_PROJ = corelib test_mt test_boost
-+LIB_PROJ = corelib test_mt
- SUB_PROJ = test
- PROJ_TAG = core
-
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-remove-old-symlinks.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-remove-old-symlinks.patch
deleted file mode 100644
index 098a9ad1e..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-remove-old-symlinks.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- ncbi_cxx--18_0_0/src/dbapi/lang_bind/python/tests/Makefile.symlink.in.old 2017-03-26 19:01:58.101495278 +0200
-+++ ncbi_cxx--18_0_0/src/dbapi/lang_bind/python/tests/Makefile.symlink.in 2017-03-26 19:02:16.581990522 +0200
-@@ -13,6 +13,7 @@
- -a ! -d $(libdir)/64 ]; then \
- cd $(libdir) && $(LN_S) . 64; \
- fi
-+ $(RM) $(LINK)
- cd $(libdir) && $(LN_S) libpython_ncbi_dbapi$(loadable_ext) $(LINK)
-
- clean:;
diff --git a/sci-biology/ncbi-tools++/files/report_project_settings_configure.ac.patch b/sci-biology/ncbi-tools++/files/report_project_settings_configure.ac.patch
deleted file mode 100644
index 41240c330..000000000
--- a/sci-biology/ncbi-tools++/files/report_project_settings_configure.ac.patch
+++ /dev/null
@@ -1,64 +0,0 @@
---- trunk/c++/src/build-system/configure.ac 2012/12/27 15:43:29 56694
-+++ trunk/c++/src/build-system/configure.ac 2013/01/03 03:16:14 56754
-@@ -605,7 +605,8 @@
- fi
-
- case "$with_projects" in
-- "") if test -r projects; then
-+ ""|yes)
-+ if test -r projects; then
- AC_MSG_NOTICE([using default projects file "projects".])
- with_projects=projects
- AC_SUBST(PROJECTS, "\$(top_srcdir)/projects")
-@@ -623,6 +624,16 @@
- * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
- esac
-
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ AC_MSG_ERROR([unable to read requested projects file "$abs_projects".])
-+fi
-+
- # Check for custom optimization flags before potentially going with defaults.
- skip_fast_flags=no
- if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
-@@ -6379,7 +6390,7 @@
- sep=", "
- fi
- if test -n "$reason" -a "$with_internal" = "yes"; then
-- if test -z "$with_projects" -o "$with_projects" = "no"; then
-+ if test -z "$with_projects"; then
- AC_MSG_ERROR([--with-internal: Cannot build INTERNAL projects: missing $reason])
- else
- AC_MSG_WARN([--with-internal: Cannot build all INTERNAL projects: missing $reason])
-@@ -6982,11 +6993,9 @@
- else
- cfm_flags='-remoteptb'
- fi
-- case "$with_projects" in
-- yes ) cfm_flags="$cfm_flags -p projects" ;;
-- no | '' ) ;;
-- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
-- esac
-+ if test -n "$with_projects"; then
-+ cfm_flags="$cfm_flags -p $with_projects"
-+ fi
- if test "$with_configure_dialog" = yes; then
- cfm_flags="$cfm_flags -cfg"
- fi
-@@ -7029,7 +7038,8 @@
- esac
-
- if test -n "$with_projects"; then
-- build_proj="To build selected projects: cd $builddir && make all_p"
-+ build_proj="To build selected projects (as listed in \"$with_projects\"):
-+ cd $builddir && make all_p"
- fi
-
- cat << EOCONF
-
diff --git a/sci-biology/ncbi-tools++/files/report_project_settings_configure.patch b/sci-biology/ncbi-tools++/files/report_project_settings_configure.patch
deleted file mode 100644
index 0c1b2d227..000000000
--- a/sci-biology/ncbi-tools++/files/report_project_settings_configure.patch
+++ /dev/null
@@ -1,66 +0,0 @@
--- trunk/c++/src/build-system/configure 2012/12/27 15:43:29 56694
-+++ trunk/c++/src/build-system/configure 2013/01/03 03:16:14 56754
-@@ -3125,7 +3125,8 @@
- fi
-
- case "$with_projects" in
-- "") if test -r projects; then
-+ ""|yes)
-+ if test -r projects; then
- { echo "$as_me:$LINENO: using default projects file \"projects\"." >&5
- echo "$as_me: using default projects file \"projects\"." >&6;}
- with_projects=projects
-@@ -3151,6 +3152,18 @@
- ;;
- esac
-
-+if test -n "$with_projects"; then
-+ case "$with_projects" in
-+ /* ) abs_projects=$with_projects ;;
-+ yes) abs_projects=$srcdir/projects ;;
-+ * ) abs_projects=$srcdir/$with_projects ;;
-+ esac
-+ test -r "$abs_projects" || \
-+ { { echo "$as_me:$LINENO: error: unable to read requested projects file \"$abs_projects\"." >&5
-+echo "$as_me: error: unable to read requested projects file \"$abs_projects\"." >&2;}
-+ { (exit 1); exit 1; }; }
-+fi
-+
- # Check for custom optimization flags before potentially going with defaults.
- skip_fast_flags=no
- if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
-@@ -33825,7 +33838,7 @@
- sep=", "
- fi
- if test -n "$reason" -a "$with_internal" = "yes"; then
-- if test -z "$with_projects" -o "$with_projects" = "no"; then
-+ if test -z "$with_projects"; then
- { { echo "$as_me:$LINENO: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&5
- echo "$as_me: error: --with-internal: Cannot build INTERNAL projects: missing $reason" >&2;}
- { (exit 1); exit 1; }; }
-@@ -36062,11 +36075,9 @@
- else
- cfm_flags='-remoteptb'
- fi
-- case "$with_projects" in
-- yes ) cfm_flags="$cfm_flags -p projects" ;;
-- no | '' ) ;;
-- * ) cfm_flags="$cfm_flags -p $with_projects" ;;
-- esac
-+ if test -n "$with_projects"; then
-+ cfm_flags="$cfm_flags -p $with_projects"
-+ fi
- if test "$with_configure_dialog" = yes; then
- cfm_flags="$cfm_flags -cfg"
- fi
-@@ -36110,7 +36121,8 @@
- esac
-
- if test -n "$with_projects"; then
-- build_proj="To build selected projects: cd $builddir && make all_p"
-+ build_proj="To build selected projects (as listed in \"$with_projects\"):
-+ cd $builddir && make all_p"
- fi
-
- cat << EOCONF
-
diff --git a/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.ac.patch b/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.ac.patch
deleted file mode 100644
index 89dae23ad..000000000
--- a/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.ac.patch
+++ /dev/null
@@ -1,54 +0,0 @@
---- trunk/c++/src/build-system/configure.ac 2012/12/21 15:12:14 56664
-+++ trunk/c++/src/build-system/configure.ac 2012/12/27 15:43:29 56694
-@@ -623,6 +623,13 @@
- * ) AC_SUBST(PROJECTS, "\$(top_srcdir)/$with_projects") ;;
- esac
-
-+# Check for custom optimization flags before potentially going with defaults.
-+skip_fast_flags=no
-+if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
-+ case " $CFLAGS $CXXFLAGS" in
-+ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
-+ esac
-+fi
-
- #### Always define this
- AC_DEFINE(NCBI_CXX_TOOLKIT, 1, [This is the NCBI C++ Toolkit.])
-@@ -1431,7 +1438,7 @@
- wsrx="[[$wschars]]"
-
- #### Flags to enable (potentially unsafe) extra optimization.
--if test -z "$DEF_FAST_FLAGS" -o -z "$FAST_CXXFLAGS" ; then
-+if test "$skip_fast_flags" = no -a -z "$DEF_FAST_FLAGS" ; then
- case "$compiler:$compiler_version" in
- GCC:2* | GCC:344 )
- # GCC 2.9x sometimes experiences internal errors at high optimization;
-@@ -1502,8 +1509,6 @@
- DEF_FAST_FLAGS="-O"
- ;;
- esac
--else
-- DEF_FAST_FLAGS="-O"
- fi
-
- : ${FAST_CFLAGS="$DEF_FAST_FLAGS"}
-@@ -2608,9 +2613,15 @@
- CXXFLAGS="$CXXFLAGS -O" ; fi
- if echo " $LDFLAGS " | grep -v "$optrx" >/dev/null ; then
- LDFLAGS="$LDFLAGS -O" ; fi
-- FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
-- FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
-- FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
-+ if test "$skip_fast_flags" = yes ; then
-+ FAST_CFLAGS="$CFLAGS"
-+ FAST_CXXFLAGS="$CXXFLAGS"
-+ FAST_LDFLAGS="$LDFLAGS"
-+ else
-+ FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
-+ FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
-+ FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
-+ fi
- fi
- changequote([, ])dnl
- fi
-
diff --git a/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.patch b/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.patch
deleted file mode 100644
index 669b31722..000000000
--- a/sci-biology/ncbi-tools++/files/respect_CXXFLAGS_configure.patch
+++ /dev/null
@@ -1,53 +0,0 @@
---- trunk/c++/src/build-system/configure 2012/12/21 15:12:14 56664
-+++ trunk/c++/src/build-system/configure 2012/12/27 15:43:29 56694
-@@ -3151,6 +3151,13 @@
- ;;
- esac
-
-+# Check for custom optimization flags before potentially going with defaults.
-+skip_fast_flags=no
-+if test -z "${DEF_FAST_FLAGS}${FAST_CXXFLAGS}"; then
-+ case " $CFLAGS $CXXFLAGS" in
-+ *\ -O* | *\ -xO* ) skip_fast_flags=yes ;;
-+ esac
-+fi
-
- #### Always define this
-
-@@ -5715,7 +5722,7 @@
- wsrx="[$wschars]"
-
- #### Flags to enable (potentially unsafe) extra optimization.
--if test -z "$DEF_FAST_FLAGS" -o -z "$FAST_CXXFLAGS" ; then
-+if test "$skip_fast_flags" = no -a -z "$DEF_FAST_FLAGS" ; then
- case "$compiler:$compiler_version" in
- GCC:2* | GCC:344 )
- # GCC 2.9x sometimes experiences internal errors at high optimization;
-@@ -5786,8 +5793,6 @@
- DEF_FAST_FLAGS="-O"
- ;;
- esac
--else
-- DEF_FAST_FLAGS="-O"
- fi
-
- : ${FAST_CFLAGS="$DEF_FAST_FLAGS"}
-@@ -8936,9 +8941,15 @@
- CXXFLAGS="$CXXFLAGS -O" ; fi
- if echo " $LDFLAGS " | grep -v "$optrx" >/dev/null ; then
- LDFLAGS="$LDFLAGS -O" ; fi
-- FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
-- FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
-- FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
-+ if test "$skip_fast_flags" = yes ; then
-+ FAST_CFLAGS="$CFLAGS"
-+ FAST_CXXFLAGS="$CXXFLAGS"
-+ FAST_LDFLAGS="$LDFLAGS"
-+ else
-+ FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
-+ FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
-+ FAST_LDFLAGS="$NOPT_LDFLAGS $FAST_LDFLAGS"
-+ fi
- fi
- fi
-
diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-biology/ncbi-tools++/metadata.xml
deleted file mode 100644
index fbf79d9b7..000000000
--- a/sci-biology/ncbi-tools++/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <use>
- <flag name="boost">Undocumented USE</flag>
- <flag name="cppunit">Undocumented USE</flag>
- <flag name="freetype">Undocumented USE</flag>
- <flag name="mesa">Undocumented USE</flag>
- <flag name="muparser">Undocumented USE</flag>
- <flag name="sablotron">Undocumented USE</flag>
- <flag name="xerces">Undocumented USE</flag>
- <flag name="xalan">Undocumented USE</flag>
- <flag name="xslt">Undocumented USE</flag>
- </use>
-</pkgmetadata>
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
deleted file mode 100644
index 009085d15..000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild
+++ /dev/null
@@ -1,364 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit toolchain-funcs
-
-MY_TAG="Jun_15_2010"
-MY_Y="${MY_TAG/*_/}"
-MY_PV="12_0_0"
-MY_P="ncbi_cxx--${MY_PV}"
-#ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz
-
-# for example sci-biology/ncbi-tools++-12.0.0 contains blastn-2.2.28+
-DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
-HOMEPAGE="https://ncbi.github.io/cxx-toolkit/"
-SRC_URI="
- ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz"
-# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
-
-# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
-# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
-LICENSE="public-domain"
-SLOT="0"
-IUSE="
- debug static-libs static threads pch
- test wxwidgets odbc
- berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype gif
- glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png
- sablotron sqlite tiff xerces xalan xml xpm xslt X"
-#KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-KEYWORDS="~amd64"
-RESTRICT="!test? ( test )"
-
-# sys-libs/db should be compiled with USE=cxx
-# dev-libs/boost must have Boost.Test suite, probably dev-libs/boost[test] then?
-DEPEND="
- <sys-devel/gcc-10:=
- app-arch/cpio
- berkdb? ( sys-libs/db:=[cxx(-)] )
- boost? ( dev-libs/boost[tools] )
- curl? ( net-misc/curl )
- sqlite? ( dev-db/sqlite:3 )
- mysql? ( virtual/mysql )
- fltk? ( x11-libs/fltk )
- opengl? ( virtual/opengl media-libs/glew:0= )
- mesa? ( media-libs/mesa[osmesa] )
- glut? ( media-libs/freeglut )
- freetype? ( media-libs/freetype )
- gnutls? ( net-libs/gnutls )
- cppunit? ( dev-util/cppunit )
- icu? ( dev-libs/icu )
- expat? ( dev-libs/expat )
- sablotron? ( app-text/sablotron )
- xml? ( dev-libs/libxml2 )
- xslt? ( dev-libs/libxslt )
- xerces? ( dev-libs/xerces-c )
- xalan? ( dev-libs/xalan-c )
- muparser? ( dev-cpp/muParser )
- hdf5? ( sci-libs/hdf5[cxx] )
- gif? ( media-libs/giflib )
- jpeg? ( media-libs/libjpeg-turbo:0= )
- png? ( media-libs/libpng:0= )
- tiff? ( media-libs/tiff:0= )
- xpm? ( x11-libs/libXpm )
- dev-libs/lzo
- app-arch/bzip2
- dev-libs/libpcre"
-# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
-# Intentionally omitted USE flags:
-# ftds? ( dev-db/freetds ) # support for outside FreeTDS installations is currently broken.
-# The default (heavily patched) embedded copy should work, or you can
-# leave it off altogether -- the only public apps that make use of it are
-# samples and tests, since NCBI's database servers are of course firewalled.
-
-# seems muParser is required, also glew is required. configure exits otherwise if these are explicitly passed to it (due to USE flag enabled)
-
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${P}-conf-opts.patch
- "${FILESDIR}"/${P}-fix-svn-URL-upstream.patch
- "${FILESDIR}"/${P}-linkage-tuneups.patch
- "${FILESDIR}"/${P}-more-patches.patch
- "${FILESDIR}"/${P}-linkage-tuneups-addons.patch
- "${FILESDIR}"/${P}-configure.patch
- "${FILESDIR}"/${P}-drop-STATIC-from-LIB.patch
- "${FILESDIR}"/${P}-fix-install.patch
- "${FILESDIR}"/${P}-bdb6.patch
- "${FILESDIR}"/${P}-never_build_test_boost.patch # bug #579248
- )
-
-src_prepare() {
- default
-# filter-ldflags -Wl,--as-needed
-# append-ldflags -Wl,--no-undefined
-# sed -i -e 's/-print-file-name=libstdc++.a//' \
-# -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
-# src/build-system/configure || die
-# epatch \
-# "${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
-# "${FILESDIR}"/curl-types.patch \
-# "${FILESDIR}"/malloc_initialize_upstream_fix.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.ac.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.patch \
-# "${FILESDIR}"/report_project_settings_configure.ac.patch \
-# "${FILESDIR}"/report_project_settings_configure.patch \
-# "${FILESDIR}"/make_install.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \
-# "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-libpng15.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
-
-# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
-
-# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
-# "${FILESDIR}"/${P}-as-needed.patch
-# "${FILESDIR}"/${P}-fix-creaders-linking.patch
-# "${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch
-# )
- # "${FILESDIR}"/${P}-support-autoconf-2.60.patch
- # make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60
- # https://bugs.gentoo.org/show_bug.cgi?id=514706
-
- tc-export CXX CC
-
- cd src/build-system || die
-# eautoreconf
-
- # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
- # eautoconf # keep it disabled until we can ensure 2.59 is installed
- # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
-}
-
-# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
-src_configure() {
- local myconf=()
- #--without-optimization turn off optimization flags in non-debug mode
- #--with-profiling build profiled versions of libs and apps
- #--with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
- #--with-plugin-auto-load always enable the plugin manager by default
- #--with-bundles build bundles in addition to dylibs on Mac OS X
- #--with-bin-release build executables suitable for public release
- # no dll and such
- #--with-64 compile to 64-bit code
- #--with-universal build universal binaries on Mac OS X
- #--with-universal=CPUs build universal binaries targeting the given CPUs
- #--without-exe do not build executables
- #--with-relative-runpath=P specify an executable-relative DLL search path
- #--with-hard-runpath hard-code runtime path, ignoring LD_LIBRARY_PATH
- #--with-limited-linker don't attempt to build especially large projects
- #--with-extra-action= script to call after the configuration is complete
- #--with-autodep automatic generation of dependencies (GNU make)
- #--with-fake-root=DIR appear to have been built under DIR
- #--with-build-root-sfx=X add a user-specified suffix to the build dir name
- #--without-execopy do not copy built executables to the BIN area
- #--with-lib-rebuilds ensure that apps use up-to-date libraries
- #--with-lib-rebuilds=ask ask whether to update each app's libraries
- #--without-deactivation keep old copies of libraries that no longer build
- #--without-makefile-auto-update do not auto-update generated makefiles
- #--with-projects=FILE build projects listed in FILE by default
- #--without-flat-makefile do not generate an all-encompassing flat makefile
- #--with-configure-dialog allow interactive flat makefile project selection
- #--with-saved-settings=F load configuration settings from the file F
- #--with-check-tools=... use the specified tools for testing
- #--with-ncbi-public ensure compatibility for all in-house platforms
- #--with-sybase-local=DIR use local SYBASE install (DIR is optional)
- #--with-sybase-new use newer SYBASE install (12.5 rather than 12.0)
- #--without-sp do not use SP libraries
- #--without-orbacus do not use ORBacus CORBA libraries
- #--with-orbacus=DIR use ORBacus installation in DIR
- #--with-jni(=JDK-DIR) build Java bindings (against the JDK in JDK-DIR)
- #--with-sablot=DIR use Sablotron installation in DIR
- #--without-sablot, do not use Sablotron
- #--with-oechem=DIR use OpenEye OEChem installation in DIR
- #--without-oechem do not use OEChem
- #--with-sge=DIR use Sun Grid Engine installation in DIR
- #--without-sge do not use Sun Grid Engine
- #--with-magic=DIR use libmagic installation in DIR
- #--without-magic do not use libmagic
- #--without-local-lbsm turn off support for IPC with locally running LBSMD
- #--without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
- #--without-connext do not build non-public CONNECT library extensions
- #--without-serial do not build the serialization library and tools
- #--without-objects do not generate/build serializeable objects from ASNs
- #--without-dbapi do not build database connectivity libraries
- #--without-app do not build standalone applications like ID1_FETCH
- #--without-gui do not build most graphical projects
- #--without-algo do not build CPU-intensive algorithms
- #--without-internal do not build internal projects
- #--with-gbench ensure that Genome Workbench can be built
- #--without-gbench do not build Genome Workbench
- myconf+=(
- --with-dll
- --with-lfs
- --with-build-root="${S}"_build
- --without-suffix
- --without-hostspec
- --without-version
- --with-bincopy
- --without-strip
- --without-ccache
- --without-distcc
-# --with-ncbi-c
- --without-ctools
-# --with-sss
-# --with-sssutils
-# --with-sssdb
-# --with-included-sss
- --with-z="${EPREFIX}/usr"
- --with-bz2="${EPREFIX}/usr"
- --without-sybase
- --with-autodep
-# --with-3psw=std:netopt favor standard (system) builds of the above pkgs
- # --without-downloaded-vdb is not available in 12.0.0 release yet
- # preventing executing git to checkout during configure phase ncbi-vdb sources
- # resulting in 'checking for ncbi-vdb... no' and
- # '^PACKAGES:'
- # '^ disabled: ... VDB'
- # --without-downloaded-vdb
- $(use_with debug)
- $(use_with debug max-debug)
- $(use_with debug symbols)
- $(use_with static-libs static)
- $(use_with static static-exe)
- $(use_with threads mt)
- $(use_with prefix runpath "${EPREFIX}/usr/$(get_libdir)/${PN}")
- $(use_with test check)
- $(use_with pch)
- $(use_with lzo lzo "${EPREFIX}/usr")
- $(use_with pcre pcre "${EPREFIX}/usr")
- $(use_with gnutls gnutls "${EPREFIX}/usr")
- $(use_with mysql mysql "${EPREFIX}/usr")
- $(use_with muparser muparser "${EPREFIX}/usr")
- $(usex fltk --with-fltk="${EPREFIX}/usr" "")
- $(use_with opengl opengl "${EPREFIX}/usr")
- $(use_with mesa mesa "${EPREFIX}/usr")
- $(use_with opengl glut "${EPREFIX}/usr")
- $(use_with opengl glew "${EPREFIX}/usr")
- $(use_with opengl glew-mx)
- $(use_with wxwidgets wxwidgets "${EPREFIX}/usr")
- $(use_with wxwidgets wxwidgets-ucs)
- $(use_with freetype freetype "${EPREFIX}/usr")
- $(use_with fastcgi fastcgi "${EPREFIX}/usr")
- $(use_with berkdb bdb "${EPREFIX}/usr")
- $(usex odbc --with-odbc="${EPREFIX}/usr" "")
- # is python2
- --without-python
- $(use_with boost boost "${EPREFIX}/usr")
- $(use_with sqlite sqlite3 "${EPREFIX}/usr")
- $(use_with icu icu "${EPREFIX}/usr")
- $(use_with expat expat "${EPREFIX}/usr")
- $(use_with xml libxml "${EPREFIX}/usr")
- $(use_with xml libxslt "${EPREFIX}/usr")
- $(use_with xerces xerces "${EPREFIX}/usr")
- $(use_with hdf5 hdf5 "${EPREFIX}/usr")
- $(use_with xalan xalan "${EPREFIX}/usr")
-# $(use_with gif gif "${EPREFIX}/usr") # prevent compilation failure in "ncbi-tools++-12.0.0/src/util/image/image_io_gif.cpp:351: error: 'QuantizeBuffer' was not declared in this scope"
- --without-gif
- $(use_with jpeg jpeg "${EPREFIX}/usr")
- $(use_with tiff tiff "${EPREFIX}/usr")
- $(use_with png png "${EPREFIX}/usr")
- $(use_with xpm xpm "${EPREFIX}/usr")
- $(use_with curl curl "${EPREFIX}/usr")
-# $(use_with X x "${EPREFIX}/usr")
-# $(use_with X x) # there is no --with-x option
- )
-
- # http://www.ncbi.nlm.nih.gov/books/NBK7167/
- use test || myconf+=( --with-projects="${FILESDIR}"/disable-testsuite-compilation.txt )
-
- # TODO
- # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
- # otherwise your -O2 will be dropped in some subdirectories and replaced by e.g. -O9
-
- einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
-
-# ECONF_SOURCE="src/build-system" \
-# econf \
- bash \
- ./src/build-system/configure \
- --srcdir="${S}" \
- --prefix="${EPREFIX}/usr" \
- --libdir=/usr/lib64 \
- --with-flat-makefile \
- ${myconf[@]} || die
-#--without-debug \
-# --with-bin-release \
-# --with-bincopy \
-# --without-static \
-# --with-dll \
-# --with-mt \
-# --with-openmp \
-# --with-lfs \
-# --prefix="${ED}"/usr \
-# --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
-# ${myconf} LDFLAGS="-Wl,--no-as-needed" \
-# || die
-# econf ${myconf[@]}
-}
-
-src_compile() {
- ## all_r would ignore the --with-projects contents and build more
- ## emake all_r -C GCC*-Release*/build || die
- ## all_p with compile only selected/required components
- ##cd "${S}"_build &&\
- ##emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
- #emake all_p -C "${S}"_build/build
-
- #
- # Re: /usr/lib64/ncbi-tools++/libdbapi_driver.so: undefined reference to `ncbi::NcbiGetlineEOL(std::istream&, std::string&)'
- #
- # The next release should automatically address such underlinking, albeit
- # only in --with-flat-makefile configurations. For now (12.0.0), you'll need to
- # add or extend more DLL_LIB settings, to which end you may find the
- # resources at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/
- # helpful. For instance,
- #
- # http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/dbapi_driver.html
- #
- # indicates that src/dbapi/driver/Makefile.dbapi_driver.lib should set
- #
- # DLL_LIB = xncbi
- #
- # (You can find the path to that makefile by examining
- # .../status/.dbapi_driver.dep or .../build/Makefile.flat.)
- #
- # To take full advantage of --with-flat-makefile, you'll need the following (instead of 'emake all_p -C "${S}"_build/build') and call configure --with-flat-makefile:
- emake -C "${S}"_build/build -f Makefile.flat
- #
- # >=gcc-5.3.0 is not supported, see also bug #579248#c8
- # configure: error: Do not know how to build MT-safe with compiler /usr/bin/x86_64-pc-linux-gnu-g++ 5.3.0
-}
-
-src_install() {
- rm -rvf "${S}"_build/lib/ncbi || die
- emake install prefix="${ED}/usr" libdir="${ED}/usr/$(get_libdir)/${PN}"
-
-# dobin "${S}"_build/bin/*
-# dolib.so "${S}"_build/lib/*so*
-# dolib.a "${S}"_build/lib/*.a
-# doheader "${S}"_build/inc/*
-
- # File collisions with sci-biology/ncbi-tools
- mv "${ED}"/usr/bin/asn2asn "${ED}"/usr/bin/asn2asn+
- mv "${ED}"/usr/bin/rpsblast "${ED}"/usr/bin/rpsblast+
- mv -f "${ED}"/usr/bin/test_regexp "${ED}"/usr/bin/test_regexp+ # drop the eventually mistakenly compiled binaries
- mv "${ED}"/usr/bin/vecscreen "${ED}"/usr/bin/vecscreen+
- mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop+
-
- echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
- doenvd "${S}/99${PN}"
-}
-
-pkg_postinst() {
- einfo 'Please run "source /etc/profile" before using this package in the current shell.'
- einfo 'Documentation is at http://www.ncbi.nlm.nih.gov/books/NBK7167/'
-}
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
deleted file mode 100644
index 604c9c638..000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ /dev/null
@@ -1,383 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit python-single-r1 toolchain-funcs
-
-MY_TAG="Jun_15_2010"
-MY_Y="${MY_TAG/*_/}"
-MY_PV="18_0_0"
-MY_P="ncbi_cxx--${MY_PV}"
-#ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/9_0_0/ncbi_cxx--9_0_0.tar.gz
-
-# for example sci-biology/ncbi-tools++-12.0.0 contains blastn-2.2.28+
-DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
-HOMEPAGE="https://ncbi.github.io/cxx-toolkit/"
-SRC_URI="
- ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/2017/Jan_10_2017/ncbi_cxx--${MY_PV}.tar.gz"
-# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
-
-# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
-# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
-LICENSE="public-domain"
-SLOT="0"
-IUSE="
- debug static-libs static threads pch
- test wxwidgets odbc
- berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype gif
- glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
- sablotron sqlite tiff xerces xalan xml xpm xslt X"
-KEYWORDS="~amd64 ~x86"
-RESTRICT="!test? ( test )"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-# sys-libs/db should be compiled with USE=cxx
-# dev-libs/boost must have Boost.Test suite, probably dev-libs/boost[test] then?
-DEPEND="
- <sys-devel/gcc-10:=
- app-arch/cpio
- berkdb? ( sys-libs/db:=[cxx(-)] )
- boost? ( dev-libs/boost[tools] )
- curl? ( net-misc/curl )
- sqlite? ( dev-db/sqlite:3 )
- mysql? ( virtual/mysql )
- fltk? ( x11-libs/fltk )
- opengl? ( virtual/opengl media-libs/glew:0= )
- mesa? ( media-libs/mesa[osmesa] )
- glut? ( media-libs/freeglut )
- freetype? ( media-libs/freetype )
- gnutls? ( net-libs/gnutls )
- python? ( ${PYTHON_DEPS} )
- cppunit? ( dev-util/cppunit )
- icu? ( dev-libs/icu )
- expat? ( dev-libs/expat )
- sablotron? ( app-text/sablotron )
- xml? ( dev-libs/libxml2 )
- xslt? ( dev-libs/libxslt )
- xerces? ( dev-libs/xerces-c )
- xalan? ( dev-libs/xalan-c )
- muparser? ( dev-cpp/muParser )
- hdf5? ( sci-libs/hdf5[cxx] )
- gif? ( media-libs/giflib )
- jpeg? ( media-libs/libjpeg-turbo:0= )
- png? ( media-libs/libpng:0= )
- tiff? ( media-libs/tiff:0= )
- xpm? ( x11-libs/libXpm )
- dev-libs/lzo
- app-arch/bzip2
- dev-libs/libpcre"
-# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
-# Intentionally omitted USE flags:
-# ftds? ( dev-db/freetds ) # support for outside FreeTDS installations is currently broken.
-# The default (heavily patched) embedded copy should work, or you can
-# leave it off altogether -- the only public apps that make use of it are
-# samples and tests, since NCBI's database servers are of course firewalled.
-
-# seems muParser is required, also glew is required. configure exits otherwise if these are explicitly passed to it (due to USE flag enabled)
-
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${P}-configure.patch
- "${FILESDIR}"/${P}-fix-install.patch
- "${FILESDIR}"/${P}-never_build_test_boost.patch # bug #579248
- "${FILESDIR}"/${P}-fix-annotwriter-linking.patch
- "${FILESDIR}"/${P}-fix-undefined-xobjread.patch
- "${FILESDIR}"/${P}-fix-apps-blast-linking.patch
- "${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch
- "${FILESDIR}"/${P}-fix-app-compartp-linking.patch
- "${FILESDIR}"/${P}-fix-app-convert_seq-linking.patch
- "${FILESDIR}"/${P}-fix-app-hfilter-linking.patch
- "${FILESDIR}"/${P}-fix-app-igblast-linking.patch
- "${FILESDIR}"/${P}-fix-ncfetch-linking.patch
- "${FILESDIR}"/${P}-fix-netcache_cgi_sample-linking.patch
- "${FILESDIR}"/${P}-fix-netstorage_gc-linking.patch
- "${FILESDIR}"/${P}-fix-speedtest-linking.patch
- "${FILESDIR}"/${P}-fix-splign-linking.patch
- "${FILESDIR}"/${P}-fix-srcchk-linking.patch
- "${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch
- "${FILESDIR}"/${P}-remove-old-symlinks.patch
- "${FILESDIR}"/${P}-fix-app-table2asn-linking.patch
- "${FILESDIR}"/${P}-fix-app-tls-linking.patch
- "${FILESDIR}"/${P}-fix-app-vecscreen-linking.patch
- "${FILESDIR}"/${P}-fix-app-blast_sample-linking.patch
- )
-
-src_prepare() {
- default
-# filter-ldflags -Wl,--as-needed
-# append-ldflags -Wl,--no-undefined
-# sed -i -e 's/-print-file-name=libstdc++.a//' \
-# -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
-# src/build-system/configure || die
-# epatch \
-# "${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
-# "${FILESDIR}"/curl-types.patch \
-# "${FILESDIR}"/malloc_initialize_upstream_fix.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.ac.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.patch \
-# "${FILESDIR}"/report_project_settings_configure.ac.patch \
-# "${FILESDIR}"/report_project_settings_configure.patch \
-# "${FILESDIR}"/make_install.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \
-# "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-libpng15.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
-
-# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
-
-# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
- #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
- # make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60
- # https://bugs.gentoo.org/show_bug.cgi?id=514706
-
- tc-export CXX CC
-
- cd src/build-system || die
-# eautoreconf
-
- # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
- # eautoconf # keep it disabled until we can ensure 2.59 is installed
- # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
-}
-
-# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
-src_configure() {
- local myconf=()
- #--without-optimization turn off optimization flags in non-debug mode
- #--with-profiling build profiled versions of libs and apps
- #--with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
- #--with-plugin-auto-load always enable the plugin manager by default
- #--with-bundles build bundles in addition to dylibs on Mac OS X
- #--with-bin-release build executables suitable for public release
- # no dll and such
- #--with-64 compile to 64-bit code
- #--with-universal build universal binaries on Mac OS X
- #--with-universal=CPUs build universal binaries targeting the given CPUs
- #--without-exe do not build executables
- #--with-relative-runpath=P specify an executable-relative DLL search path
- #--with-hard-runpath hard-code runtime path, ignoring LD_LIBRARY_PATH
- #--with-limited-linker don't attempt to build especially large projects
- #--with-extra-action= script to call after the configuration is complete
- #--with-autodep automatic generation of dependencies (GNU make)
- #--with-fake-root=DIR appear to have been built under DIR
- #--with-build-root-sfx=X add a user-specified suffix to the build dir name
- #--without-execopy do not copy built executables to the BIN area
- #--with-lib-rebuilds ensure that apps use up-to-date libraries
- #--with-lib-rebuilds=ask ask whether to update each app's libraries
- #--without-deactivation keep old copies of libraries that no longer build
- #--without-makefile-auto-update do not auto-update generated makefiles
- #--with-projects=FILE build projects listed in FILE by default
- #--without-flat-makefile do not generate an all-encompassing flat makefile
- #--with-configure-dialog allow interactive flat makefile project selection
- #--with-saved-settings=F load configuration settings from the file F
- #--with-check-tools=... use the specified tools for testing
- #--with-ncbi-public ensure compatibility for all in-house platforms
- #--with-sybase-local=DIR use local SYBASE install (DIR is optional)
- #--with-sybase-new use newer SYBASE install (12.5 rather than 12.0)
- #--without-sp do not use SP libraries
- #--without-orbacus do not use ORBacus CORBA libraries
- #--with-orbacus=DIR use ORBacus installation in DIR
- #--with-jni(=JDK-DIR) build Java bindings (against the JDK in JDK-DIR)
- #--with-sablot=DIR use Sablotron installation in DIR
- #--without-sablot, do not use Sablotron
- #--with-oechem=DIR use OpenEye OEChem installation in DIR
- #--without-oechem do not use OEChem
- #--with-sge=DIR use Sun Grid Engine installation in DIR
- #--without-sge do not use Sun Grid Engine
- #--with-magic=DIR use libmagic installation in DIR
- #--without-magic do not use libmagic
- #--without-local-lbsm turn off support for IPC with locally running LBSMD
- #--without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
- #--without-connext do not build non-public CONNECT library extensions
- #--without-serial do not build the serialization library and tools
- #--without-objects do not generate/build serializeable objects from ASNs
- #--without-dbapi do not build database connectivity libraries
- #--without-app do not build standalone applications like ID1_FETCH
- #--without-gui do not build most graphical projects
- #--without-algo do not build CPU-intensive algorithms
- #--without-internal do not build internal projects
- #--with-gbench ensure that Genome Workbench can be built
- #--without-gbench do not build Genome Workbench
- myconf+=(
- --with-dll
- --with-lfs
- --with-build-root="${S}"_build
- --without-suffix
- --without-hostspec
- --without-version
- --with-bincopy
- --without-strip
- --without-ccache
- --without-distcc
-# --with-ncbi-c
- --without-ctools
-# --with-sss
-# --with-sssutils
-# --with-sssdb
-# --with-included-sss
- --with-z="${EPREFIX}/usr"
- --with-bz2="${EPREFIX}/usr"
- --without-sybase
- --with-autodep
-# --with-3psw=std:netopt favor standard (system) builds of the above pkgs
- # --without-downloaded-vdb is not available in 12.0.0 release yet
- # preventing executing git to checkout during configure phase ncbi-vdb sources
- # resulting in 'checking for ncbi-vdb... no' and
- # '^PACKAGES:'
- # '^ disabled: ... VDB'
- --without-downloaded-vdb
- $(use_with debug)
- $(use_with debug max-debug)
- $(use_with debug symbols)
- $(use_with static-libs static)
- $(use_with static static-exe)
- $(use_with threads mt)
- $(use_with prefix runpath "${EPREFIX}/usr/$(get_libdir)/${PN}")
- $(use_with test check)
- $(use_with pch)
- $(use_with lzo lzo "${EPREFIX}/usr")
- $(use_with pcre pcre "${EPREFIX}/usr")
- $(use_with gnutls gnutls "${EPREFIX}/usr")
- $(use_with mysql mysql "${EPREFIX}/usr")
- $(use_with muparser muparser "${EPREFIX}/usr")
- $(usex fltk --with-fltk="${EPREFIX}/usr" "")
- $(use_with opengl opengl "${EPREFIX}/usr")
- $(use_with mesa mesa "${EPREFIX}/usr")
- $(use_with opengl glut "${EPREFIX}/usr")
- $(use_with opengl glew "${EPREFIX}/usr")
- $(use_with opengl glew-mx)
- $(use_with wxwidgets wxwidgets "${EPREFIX}/usr")
- $(use_with wxwidgets wxwidgets-ucs)
- $(use_with freetype freetype "${EPREFIX}/usr")
- $(use_with fastcgi fastcgi "${EPREFIX}/usr")
- $(use_with berkdb bdb "${EPREFIX}/usr")
- $(usex odbc --with-odbc="${EPREFIX}/usr" "")
- $(use_with python python "${EPREFIX}/usr")
- $(use_with boost boost "${EPREFIX}/usr")
- $(use_with sqlite sqlite3 "${EPREFIX}/usr")
- $(use_with icu icu "${EPREFIX}/usr")
- $(use_with expat expat "${EPREFIX}/usr")
- $(use_with xml libxml "${EPREFIX}/usr")
- $(use_with xml libxslt "${EPREFIX}/usr")
- $(use_with xerces xerces "${EPREFIX}/usr")
- $(use_with hdf5 hdf5 "${EPREFIX}/usr")
- $(use_with xalan xalan "${EPREFIX}/usr")
-# $(use_with gif gif "${EPREFIX}/usr") # prevent compilation failure in "ncbi-tools++-12.0.0/src/util/image/image_io_gif.cpp:351: error: 'QuantizeBuffer' was not declared in this scope"
- --without-gif
- $(use_with jpeg jpeg "${EPREFIX}/usr")
- $(use_with tiff tiff "${EPREFIX}/usr")
- $(use_with png png "${EPREFIX}/usr")
- $(use_with xpm xpm "${EPREFIX}/usr")
- $(use_with curl curl "${EPREFIX}/usr")
-# $(use_with X x "${EPREFIX}/usr")
-# $(use_with X x) # there is no --with-x option
- )
-
- # http://www.ncbi.nlm.nih.gov/books/NBK7167/
- use test || myconf+=( --with-projects="${FILESDIR}"/disable-testsuite-compilation.txt )
-
- # TODO
- # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
- # otherwise your -O2 will be dropped in some subdirectories and replaced by e.g. -O9
-
- einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
-
-# ECONF_SOURCE="src/build-system" \
-# econf \
- bash \
- ./src/build-system/configure \
- --srcdir="${S}" \
- --prefix="${EPREFIX}/usr" \
- --libdir=/usr/lib64 \
- --with-flat-makefile \
- ${myconf[@]} || die
-#--without-debug \
-# --with-bin-release \
-# --with-bincopy \
-# --without-static \
-# --with-dll \
-# --with-mt \
-# --with-openmp \
-# --with-lfs \
-# --prefix="${ED}"/usr \
-# --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
-# ${myconf} LDFLAGS="-Wl,--no-as-needed" \
-# || die
-# econf ${myconf[@]}
-}
-
-src_compile() {
- ## all_r would ignore the --with-projects contents and build more
- ## emake all_r -C GCC*-Release*/build || die
- ## all_p with compile only selected/required components
- ##cd "${S}"_build &&\
- ##emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
- #emake all_p -C "${S}"_build/build
-
- #
- # Re: /usr/lib64/ncbi-tools++/libdbapi_driver.so: undefined reference to `ncbi::NcbiGetlineEOL(std::istream&, std::string&)'
- #
- # The next release should automatically address such underlinking, albeit
- # only in --with-flat-makefile configurations. For now (12.0.0), you'll need to
- # add or extend more DLL_LIB settings, to which end you may find the
- # resources at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/
- # helpful. For instance,
- #
- # http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/dbapi_driver.html
- #
- # indicates that src/dbapi/driver/Makefile.dbapi_driver.lib should set
- #
- # DLL_LIB = xncbi
- #
- # (You can find the path to that makefile by examining
- # .../status/.dbapi_driver.dep or .../build/Makefile.flat.)
- #
- # To take full advantage of --with-flat-makefile, you'll need the following (instead of 'emake all_p -C "${S}"_build/build') and call configure --with-flat-makefile:
- emake -C "${S}"_build/build -f Makefile.flat
- #
- # >=gcc-5.3.0 is not supported, see also bug #579248#c8
- # configure: error: Do not know how to build MT-safe with compiler /usr/bin/x86_64-pc-linux-gnu-g++ 5.3.0
-}
-
-src_install() {
- rm -rvf "${S}"_build/lib/ncbi || die
- emake install prefix="${ED}/usr" libdir="${ED}/usr/$(get_libdir)/${PN}"
-
-# dobin "${S}"_build/bin/*
-# dolib.so "${S}"_build/lib/*so*
-# dolib.a "${S}"_build/lib/*.a
-# doheader "${S}"_build/inc/*
-
- # File collisions with sci-biology/ncbi-tools
- mv "${ED}"/usr/bin/asn2asn "${ED}"/usr/bin/asn2asn+
- mv "${ED}"/usr/bin/rpsblast "${ED}"/usr/bin/rpsblast+
- mv -f "${ED}"/usr/bin/test_regexp "${ED}"/usr/bin/test_regexp+ # drop the eventually mistakenly compiled binaries
- mv "${ED}"/usr/bin/vecscreen "${ED}"/usr/bin/vecscreen+
- mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop+
- #
- # idfetch collides with idfetch from ncbi-tools-2.2.26
- # Although the two idfetch implementations do deliberately have several
- # options in common, the C++ version is not yet a full drop-in replacement
- # for the C version (and will never entirely be, due to fundamental
- # differences between the two toolkits' argument-parsing conventions).
- mv "${ED}"/usr/bin/idfetch "${ED}"/usr/bin/idfetch+ # new in ncbi-tools++-18.0.0
-
- echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
- doenvd "${S}/99${PN}"
-}
-
-pkg_postinst() {
- einfo 'Please run "source /etc/profile" before using this package in the current shell.'
- einfo 'Documentation is at http://www.ncbi.nlm.nih.gov/books/NBK7167/'
-}
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild
deleted file mode 100644
index 4d0d6363e..000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild
+++ /dev/null
@@ -1,388 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit python-single-r1 toolchain-funcs
-
-MY_TAG="Mar_28_2019"
-MY_Y="${MY_TAG/*_/}"
-MY_PV="22_0_0"
-MY_P="ncbi_cxx--${MY_PV}"
-
-# for example sci-biology/ncbi-tools++-12.0.0 contains blastn-2.2.28+
-DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
-HOMEPAGE="https://ncbi.github.io/cxx-toolkit/"
-# https://ncbi.github.io/cxx-toolkit/pages/release_notes
-SRC_URI="
- ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/2019/${MY_TAG}/ncbi_cxx--${MY_PV}.tar.gz"
-# http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz"
-
-# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz
-# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html
-LICENSE="public-domain"
-SLOT="0"
-IUSE="
- debug static-libs static threads pch
- test wxwidgets odbc
- berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype gif
- glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
- sablotron sqlite tiff xerces xalan xml xpm xslt X"
-KEYWORDS="~amd64 ~x86"
-RESTRICT="!test? ( test )"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-# sys-libs/db should be compiled with USE=cxx
-# dev-libs/boost must have Boost.Test suite, probably dev-libs/boost[test] then?
-DEPEND="
- <sys-devel/gcc-10:=
- app-arch/cpio
- berkdb? ( sys-libs/db:=[cxx(-)] )
- boost? ( dev-libs/boost[tools] )
- curl? ( net-misc/curl )
- sqlite? ( >=dev-db/sqlite-3.6.6:3 )
- mysql? ( virtual/mysql )
- fltk? ( x11-libs/fltk )
- opengl? ( virtual/opengl media-libs/glew:0= )
- mesa? ( media-libs/mesa[osmesa] )
- glut? ( media-libs/freeglut )
- freetype? ( media-libs/freetype )
- gnutls? ( net-libs/gnutls )
- python? ( ${PYTHON_DEPS} )
- cppunit? ( dev-util/cppunit )
- icu? ( dev-libs/icu )
- expat? ( dev-libs/expat )
- sablotron? ( app-text/sablotron )
- xml? ( dev-libs/libxml2 )
- xslt? ( >=dev-libs/libxslt-1.1.14 )
- xerces? ( dev-libs/xerces-c )
- xalan? ( dev-libs/xalan-c )
- muparser? ( dev-cpp/muParser )
- hdf5? ( sci-libs/hdf5[cxx] )
- gif? ( media-libs/giflib )
- jpeg? ( media-libs/libjpeg-turbo:0= )
- png? ( media-libs/libpng:0= )
- tiff? ( media-libs/tiff:0= )
- xpm? ( x11-libs/libXpm )
- >=dev-libs/lzo-2.0
- app-arch/bzip2
- dev-libs/libpcre"
-# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
-# Intentionally omitted USE flags:
-# ftds? ( dev-db/freetds ) # support for outside FreeTDS installations is currently broken.
-# The default (heavily patched) embedded copy should work, or you can
-# leave it off altogether -- the only public apps that make use of it are
-# samples and tests, since NCBI's database servers are of course firewalled.
-
-# seems muParser is required, also glew is required. configure exits otherwise if these are explicitly passed to it (due to USE flag enabled)
-
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- default
-# filter-ldflags -Wl,--as-needed
-# append-ldflags -Wl,--no-undefined
-# sed -i -e 's/-print-file-name=libstdc++.a//' \
-# -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
-# src/build-system/configure || die
-# epatch \
-# "${FILESDIR}"/${PN}-${PV#0.}-fix-order-of-libs.patch \
-# "${FILESDIR}"/curl-types.patch \
-# "${FILESDIR}"/malloc_initialize_upstream_fix.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.ac.patch \
-# "${FILESDIR}"/respect_CXXFLAGS_configure.patch \
-# "${FILESDIR}"/report_project_settings_configure.ac.patch \
-# "${FILESDIR}"/report_project_settings_configure.patch \
-# "${FILESDIR}"/make_install.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-disable_test_compress.patch
-
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc46.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-gcc47.patch \
-# "${WORKDIR}"/${PN}-${PV#0.}-asneeded.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-libpng15.patch \
-# "${FILESDIR}"/${PN}-${PV#0.}-glibc-214.patch
-
-# use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}"
-
-# The conf-opts.patch and as-needed.patch need to be adjusted for 12.0.0 line numbers
-# local PATCHES=(
-# "${FILESDIR}"/${P}-configure.patch
-# "${FILESDIR}"/${P}-fix-install.patch
-# "${FILESDIR}"/${P}-never_build_test_boost.patch # bug #579248
-# "${FILESDIR}"/${P}-fix-annotwriter-linking.patch
-# "${FILESDIR}"/${P}-fix-undefined-xobjread.patch
-# "${FILESDIR}"/${P}-fix-apps-blast-linking.patch
-# "${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch
-# "${FILESDIR}"/${P}-fix-app-compartp-linking.patch
-# "${FILESDIR}"/${P}-fix-app-convert_seq-linking.patch
-# "${FILESDIR}"/${P}-fix-app-hfilter-linking.patch
-# "${FILESDIR}"/${P}-fix-app-igblast-linking.patch
-# "${FILESDIR}"/${P}-fix-ncfetch-linking.patch
-# "${FILESDIR}"/${P}-fix-netcache_cgi_sample-linking.patch
-# "${FILESDIR}"/${P}-fix-netstorage_gc-linking.patch
-# "${FILESDIR}"/${P}-fix-speedtest-linking.patch
-# "${FILESDIR}"/${P}-fix-splign-linking.patch
-# "${FILESDIR}"/${P}-fix-srcchk-linking.patch
-# "${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch
-# "${FILESDIR}"/${P}-remove-old-symlinks.patch
-# "${FILESDIR}"/${P}-fix-app-table2asn-linking.patch
-# "${FILESDIR}"/${P}-fix-app-tls-linking.patch
-# "${FILESDIR}"/${P}-fix-app-vecscreen-linking.patch
-# "${FILESDIR}"/${P}-fix-app-blast_sample-linking.patch
-# )
- #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
-# epatch ${PATCHES[@]}
- # make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60
- # https://bugs.gentoo.org/show_bug.cgi?id=514706
-
- tc-export CXX CC
-
- cd src/build-system || die
-# eautoreconf
-
- # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
- # eautoconf # keep it disabled until we can ensure 2.59 is installed
- # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
-}
-
-# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
-src_configure() {
- local myconf=()
- #--without-optimization turn off optimization flags in non-debug mode
- #--with-profiling build profiled versions of libs and apps
- #--with-tcheck(=DIR) build for Intel Thread Checker (in DIR)
- #--with-plugin-auto-load always enable the plugin manager by default
- #--with-bundles build bundles in addition to dylibs on Mac OS X
- #--with-bin-release build executables suitable for public release
- # no dll and such
- #--with-64 compile to 64-bit code
- #--with-universal build universal binaries on Mac OS X
- #--with-universal=CPUs build universal binaries targeting the given CPUs
- #--without-exe do not build executables
- #--with-relative-runpath=P specify an executable-relative DLL search path
- #--with-hard-runpath hard-code runtime path, ignoring LD_LIBRARY_PATH
- #--with-limited-linker don't attempt to build especially large projects
- #--with-extra-action= script to call after the configuration is complete
- #--with-autodep automatic generation of dependencies (GNU make)
- #--with-fake-root=DIR appear to have been built under DIR
- #--with-build-root-sfx=X add a user-specified suffix to the build dir name
- #--without-execopy do not copy built executables to the BIN area
- #--with-lib-rebuilds ensure that apps use up-to-date libraries
- #--with-lib-rebuilds=ask ask whether to update each app's libraries
- #--without-deactivation keep old copies of libraries that no longer build
- #--without-makefile-auto-update do not auto-update generated makefiles
- #--with-projects=FILE build projects listed in FILE by default
- #--without-flat-makefile do not generate an all-encompassing flat makefile
- #--with-configure-dialog allow interactive flat makefile project selection
- #--with-saved-settings=F load configuration settings from the file F
- #--with-check-tools=... use the specified tools for testing
- #--with-ncbi-public ensure compatibility for all in-house platforms
- #--with-sybase-local=DIR use local SYBASE install (DIR is optional)
- #--with-sybase-new use newer SYBASE install (12.5 rather than 12.0)
- #--without-sp do not use SP libraries
- #--without-orbacus do not use ORBacus CORBA libraries
- #--with-orbacus=DIR use ORBacus installation in DIR
- #--with-jni(=JDK-DIR) build Java bindings (against the JDK in JDK-DIR)
- #--with-sablot=DIR use Sablotron installation in DIR
- #--without-sablot, do not use Sablotron
- #--with-oechem=DIR use OpenEye OEChem installation in DIR
- #--without-oechem do not use OEChem
- #--with-sge=DIR use Sun Grid Engine installation in DIR
- #--without-sge do not use Sun Grid Engine
- #--with-magic=DIR use libmagic installation in DIR
- #--without-magic do not use libmagic
- #--without-local-lbsm turn off support for IPC with locally running LBSMD
- #--without-ncbi-crypt use a dummy stubbed-out version of ncbi_crypt
- #--without-connext do not build non-public CONNECT library extensions
- #--without-serial do not build the serialization library and tools
- #--without-objects do not generate/build serializeable objects from ASNs
- #--without-dbapi do not build database connectivity libraries
- #--without-app do not build standalone applications like ID1_FETCH
- #--without-gui do not build most graphical projects
- #--without-algo do not build CPU-intensive algorithms
- #--without-internal do not build internal projects
- #--with-gbench ensure that Genome Workbench can be built
- #--without-gbench do not build Genome Workbench
- myconf+=(
- --with-dll
- --with-lfs
- --with-build-root="${S}"_build
- --without-suffix
- --without-hostspec
- --without-version
- --with-bincopy
- --without-strip
- --without-ccache
- --without-distcc
-# --with-ncbi-c
- --without-ctools
-# --with-sss
-# --with-sssutils
-# --with-sssdb
-# --with-included-sss
- --with-z="${EPREFIX}/usr"
- --with-bz2="${EPREFIX}/usr"
- --without-sybase
- --with-autodep
-# --with-3psw=std:netopt favor standard (system) builds of the above pkgs
- # --without-downloaded-vdb is not available in 12.0.0 release yet
- # preventing executing git to checkout during configure phase ncbi-vdb sources
- # resulting in 'checking for ncbi-vdb... no' and
- # '^PACKAGES:'
- # '^ disabled: ... VDB'
- --without-downloaded-vdb
- $(use_with debug)
-# $(use_with debug max-debug) # broken in 22.0.0 as it triggers need for https://github.com/google/sanitizers/wiki/AddressSanitizer
- $(use_with debug symbols)
- $(use_with static-libs static)
- $(use_with static static-exe)
- $(use_with threads mt)
- $(use_with prefix runpath "${EPREFIX}/usr/$(get_libdir)/${PN}")
- $(use_with test check)
- $(use_with pch)
- $(use_with lzo lzo "${EPREFIX}/usr")
- $(use_with pcre pcre "${EPREFIX}/usr")
- $(use_with gnutls gnutls "${EPREFIX}/usr")
- $(use_with mysql mysql "${EPREFIX}/usr")
- $(use_with muparser muparser "${EPREFIX}/usr")
- $(usex fltk --with-fltk="${EPREFIX}/usr" "")
- $(use_with opengl opengl "${EPREFIX}/usr")
- $(use_with mesa mesa "${EPREFIX}/usr")
- $(use_with opengl glut "${EPREFIX}/usr")
- $(use_with opengl glew "${EPREFIX}/usr")
-# $(use_with opengl glew-mx) can't find this with any version of media-libs/glew installed: explicitly specified, but no usable version found.
- $(use_with wxwidgets wxwidgets "${EPREFIX}/usr")
- $(use_with wxwidgets wxwidgets-ucs)
- $(use_with freetype freetype "${EPREFIX}/usr")
- $(use_with fastcgi fastcgi "${EPREFIX}/usr")
- $(use_with berkdb bdb "${EPREFIX}/usr")
- $(usex odbc --with-odbc="${EPREFIX}/usr" "")
- $(use_with python python "${EPREFIX}/usr")
- $(use_with boost boost "${EPREFIX}/usr")
- $(use_with sqlite sqlite3 "${EPREFIX}/usr")
- $(use_with icu icu "${EPREFIX}/usr")
- $(use_with expat expat "${EPREFIX}/usr")
- $(use_with xml libxml "${EPREFIX}/usr")
- $(use_with xml libxslt "${EPREFIX}/usr")
- $(use_with xerces xerces "${EPREFIX}/usr")
- $(use_with hdf5 hdf5 "${EPREFIX}/usr")
- $(use_with xalan xalan "${EPREFIX}/usr")
-# $(use_with gif gif "${EPREFIX}/usr") # prevent compilation failure in "ncbi-tools++-12.0.0/src/util/image/image_io_gif.cpp:351: error: 'QuantizeBuffer' was not declared in this scope"
- --without-gif
- $(use_with jpeg jpeg "${EPREFIX}/usr")
- $(use_with tiff tiff "${EPREFIX}/usr")
- $(use_with png png "${EPREFIX}/usr")
- $(use_with xpm xpm "${EPREFIX}/usr")
- $(use_with curl curl "${EPREFIX}/usr")
-# $(use_with X x "${EPREFIX}/usr")
-# $(use_with X x) # there is no --with-x option
- )
-
- # http://www.ncbi.nlm.nih.gov/books/NBK7167/
- use test || myconf+=( --with-projects="${FILESDIR}"/disable-testsuite-compilation.txt )
-
- # TODO
- # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure
- # otherwise your -O2 will be dropped in some subdirectories and replaced by e.g. -O9
-
- einfo "LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}"
-
-# ECONF_SOURCE="src/build-system" \
-# econf \
- LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib bash \
- ./src/build-system/configure \
- --srcdir="${S}" \
- --prefix="${EPREFIX}/usr" \
- --libdir=/usr/lib64 \
- --with-flat-makefile \
- ${myconf[@]} || die
-#--without-debug \
-# --with-bin-release \
-# --with-bincopy \
-# --without-static \
-# --with-dll \
-# --with-mt \
-# --with-openmp \
-# --with-lfs \
-# --prefix="${ED}"/usr \
-# --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \
-# ${myconf} LDFLAGS="-Wl,--no-as-needed" \
-# || die
-# econf ${myconf[@]}
-}
-
-src_compile() {
- ## all_r would ignore the --with-projects contents and build more
- ## emake all_r -C GCC*-Release*/build || die
- ## all_p with compile only selected/required components
- ##cd "${S}"_build &&\
- ##emake all_p -C GCC*-Release*/build || die "gcc-4.5.3 crashes at src/objects/valerr/ValidError.cpp:226:1: internal compiler error: Segmentation fault, right?"
- #emake all_p -C "${S}"_build/build
-
- #
- # Re: /usr/lib64/ncbi-tools++/libdbapi_driver.so: undefined reference to `ncbi::NcbiGetlineEOL(std::istream&, std::string&)'
- #
- # The next release should automatically address such underlinking, albeit
- # only in --with-flat-makefile configurations. For now (12.0.0), you'll need to
- # add or extend more DLL_LIB settings, to which end you may find the
- # resources at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/
- # helpful. For instance,
- #
- # http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/depgraphs/dbapi_driver.html
- #
- # indicates that src/dbapi/driver/Makefile.dbapi_driver.lib should set
- #
- # DLL_LIB = xncbi
- #
- # (You can find the path to that makefile by examining
- # .../status/.dbapi_driver.dep or .../build/Makefile.flat.)
- #
- # To take full advantage of --with-flat-makefile, you'll need the following (instead of 'emake all_p -C "${S}"_build/build') and call configure --with-flat-makefile:
- LDFLAGS=-Wl,-rpath-link,"${S}"_build/lib emake -C "${S}"_build/build -f Makefile.flat
- #
- # >=gcc-5.3.0 is not supported, see also bug #579248#c8
- # configure: error: Do not know how to build MT-safe with compiler /usr/bin/x86_64-pc-linux-gnu-g++ 5.3.0
-}
-
-src_install() {
- rm -rvf "${S}"_build/lib/ncbi || die
- emake install prefix="${ED}/usr" libdir="${ED}/usr/$(get_libdir)/${PN}"
- #
- #if [ ! use static-libs -a ! use static ]; then
- # rm -f "${ED}/usr/$(get_libdir)/${PN}"/*.a \
- # "${ED}/usr/$(get_libdir)/${PN}"/*-static.a || die
- #fi
-
-# dobin "${S}"_build/bin/*
-# dolib.so "${S}"_build/lib/*so*
-# dolib.a "${S}"_build/lib/*.a
-# doheader "${S}"_build/inc/*
-
- # File collisions with sci-biology/ncbi-tools
- mv "${ED}"/usr/bin/asn2asn "${ED}"/usr/bin/asn2asn+
- mv "${ED}"/usr/bin/rpsblast "${ED}"/usr/bin/rpsblast+
- mv -f "${ED}"/usr/bin/test_regexp "${ED}"/usr/bin/test_regexp+ # drop the eventually mistakenly compiled binaries
- mv "${ED}"/usr/bin/vecscreen "${ED}"/usr/bin/vecscreen+
- mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop+
- #
- # idfetch collides with idfetch from ncbi-tools-2.2.26
- # Although the two idfetch implementations do deliberately have several
- # options in common, the C++ version is not yet a full drop-in replacement
- # for the C version (and will never entirely be, due to fundamental
- # differences between the two toolkits' argument-parsing conventions).
- mv "${ED}"/usr/bin/idfetch "${ED}"/usr/bin/idfetch+ # new in ncbi-tools++-18.0.0
-
- echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
- doenvd "${S}/99${PN}"
-}
-
-pkg_postinst() {
- einfo 'Please run "source /etc/profile" before using this package in the current shell.'
- einfo 'Documentation is at http://www.ncbi.nlm.nih.gov/books/NBK7167/'
-}
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