[gentoo-commits] proj/sci:master commit in: sci-biology/repeatmasker-libraries/

[gentoo-commits] proj/sci:master commit in: sci-biology/repeatmasker-libraries/

[Martin Mokrejs]

commit:     f661be55eb5f418c44dbe61301f5f17037219622
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Nov 20 20:59:25 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Nov 20 20:59:25 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f661be55

sci-biology/repeatmasker-libraries: version bump and improve einfo navigation for current website layout

Package-Manager: portage-2.2.18

 sci-biology/repeatmasker-libraries/ChangeLog       | 10 ++++++
 sci-biology/repeatmasker-libraries/metadata.xml    |  5 +++
 .../repeatmasker-libraries-20150807.ebuild         | 36 ++++++++++++++++++++++
 3 files changed, 51 insertions(+)

diff --git a/sci-biology/repeatmasker-libraries/ChangeLog b/sci-biology/repeatmasker-libraries/ChangeLog
new file mode 100644
index 0000000..1c630fa
--- /dev/null
+++ b/sci-biology/repeatmasker-libraries/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/repeatmasker-libraries
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Id$
+
+*repeatmasker-libraries-20150807 (20 Nov 2015)
+
+  20 Nov 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+  +repeatmasker-libraries-20150807.ebuild:
+  sci-biology/repeatmasker-libraries: version bump and improve einfo navigation
+  for current website layout

diff --git a/sci-biology/repeatmasker-libraries/metadata.xml b/sci-biology/repeatmasker-libraries/metadata.xml
new file mode 100644
index 0000000..f17a827
--- /dev/null
+++ b/sci-biology/repeatmasker-libraries/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+</pkgmetadata>

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
new file mode 100644
index 0000000..d2c9432
--- /dev/null
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+DESCRIPTION="A special version of RepBase used by RepeatMasker"
+HOMEPAGE="http://repeatmasker.org/"
+SRC_URI="repeatmaskerlibraries-${PV}.tar.gz"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/Libraries"
+
+RESTRICT="fetch"
+
+pkg_nofetch() {
+	einfo "Please register at http://www.girinst.org/ and go to"
+	einfo '"Repbase Update - RepeatMasker edition" link'
+	einfo 'which should take you to http://www.girinst.org/server/RepBase).'
+	einfo "Download repeatmaskerlibraries-${PV}.tar.gz and place it in '${DISTDIR}"
+	einfo "Older releases can be found at http://www.girinst.org/server/archive"
+}
+
+src_install() {
+	insinto /usr/share/repeatmasker/Libraries
+	doins "${S}"/RepeatMaskerLib.embl
+	dodoc README
+	dohtml README.html
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/repeatmasker-libraries/

[Martin Mokrejs]

commit:     7618225fb04cb665bcd6bfe3e46ad99709e8b3d1
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Nov 30 15:39:05 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Nov 30 15:39:05 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7618225f

sci-biology/repeatmasker-libraries: update download URL

Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 .../repeatmasker-libraries-20150807.ebuild              |  6 ++++--
 ...07.ebuild => repeatmasker-libraries-20160829.ebuild} |  6 ++++--
 ...07.ebuild => repeatmasker-libraries-20181026.ebuild} | 17 +++++++++--------
 3 files changed, 17 insertions(+), 12 deletions(-)

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
index b767a2edb..ff9bbd89d 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -24,7 +24,9 @@ pkg_nofetch() {
 	einfo '"Repbase Update - RepeatMasker edition" link'
 	einfo 'which should take you to http://www.girinst.org/server/RepBase).'
 	einfo "Download repeatmaskerlibraries-${PV}.tar.gz and place it in '${DISTDIR}"
-	einfo "Older releases can be found at http://www.girinst.org/server/archive"
+	einfo "Older releases can be found in archive:"
+	einfo "https://www.girinst.org/repbase/update"
+	einfo "This one at https://www.girinst.org/server/archive/RepBase20.08"
 }
 
 src_install() {

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
similarity index 79%
copy from sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
copy to sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
index b767a2edb..a30389e54 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -24,7 +24,9 @@ pkg_nofetch() {
 	einfo '"Repbase Update - RepeatMasker edition" link'
 	einfo 'which should take you to http://www.girinst.org/server/RepBase).'
 	einfo "Download repeatmaskerlibraries-${PV}.tar.gz and place it in '${DISTDIR}"
-	einfo "Older releases can be found at http://www.girinst.org/server/archive"
+	einfo "Older releases can be found in archive:"
+	einfo "https://www.girinst.org/repbase/update"
+	einfo "This one at https://www.girinst.org/server/archive/RepBase21.12"
 }
 
 src_install() {

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild
similarity index 58%
copy from sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
copy to sci-biology/repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild
index b767a2edb..d7b1821bd 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild
@@ -1,15 +1,15 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
 
 DESCRIPTION="A special version of RepBase used by RepeatMasker"
 HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="repeatmaskerlibraries-${PV}.tar.gz"
+SRC_URI="RepBaseRepeatMaskerEdition-${PV}.tar.gz"
 
 LICENSE="all-rights-reserved"
 SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS=""
 IUSE=""
 
 DEPEND=""
@@ -23,13 +23,14 @@ pkg_nofetch() {
 	einfo "Please register at http://www.girinst.org/ and go to"
 	einfo '"Repbase Update - RepeatMasker edition" link'
 	einfo 'which should take you to http://www.girinst.org/server/RepBase).'
-	einfo "Download repeatmaskerlibraries-${PV}.tar.gz and place it in '${DISTDIR}"
-	einfo "Older releases can be found at http://www.girinst.org/server/archive"
+	einfo "Download RepBaseRepeatMaskerEdition-${PV}.tar.gz and place it in '${DISTDIR}"
+	einfo "Older releases can be found in archive:"
+	einfo "https://www.girinst.org/repbase/update"
+	einfo "This one at https://www.girinst.org/server/archive/RepBase23.10"
 }
 
 src_install() {
 	insinto /usr/share/repeatmasker/Libraries
-	doins "${S}"/RepeatMaskerLib.embl
-	dodoc README
-	dohtml README.html
+	doins "${S}"/RMRBSeqs.embl
+	dodoc README.RMRBSeqs
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/repeatmasker-libraries/

[Martin Mokrejs]

commit:     ead7d4aa498db6ff8dd487d0b5b159061964af09
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 28 21:51:08 2019 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 28 21:51:08 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ead7d4aa

sci-biology/repeatmasker-libraries: finish version bump, EAPI7, add KEYWORDS

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>

 .../repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild   | 4 ++--
 .../repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild   | 4 ++--
 .../repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild   | 6 +++---
 3 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
index ff9bbd89d..160d8c62d 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 DESCRIPTION="A special version of RepBase used by RepeatMasker"
 HOMEPAGE="http://repeatmasker.org/"

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
index a30389e54..2fb5b1002 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 DESCRIPTION="A special version of RepBase used by RepeatMasker"
 HOMEPAGE="http://repeatmasker.org/"

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild
index d7b1821bd..5ea9ee4b5 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20181026.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 DESCRIPTION="A special version of RepBase used by RepeatMasker"
 HOMEPAGE="http://repeatmasker.org/"
@@ -9,7 +9,7 @@ SRC_URI="RepBaseRepeatMaskerEdition-${PV}.tar.gz"
 
 LICENSE="all-rights-reserved"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
 IUSE=""
 
 DEPEND=""

[gentoo-commits] proj/sci:master commit in: sci-biology/repeatmasker-libraries/

[Martin Mokrejs]

commit:     192396a3084735738acce2fbb93475b5da28078e
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 29 13:30:44 2019 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 29 13:30:44 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=192396a3

sci-biology/repeatmasker-libraries: dohtml has been banned for EAPI 7

This slipped through repoman checks.

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>

 .../repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild       | 2 +-
 .../repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild       | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
index 160d8c62d..4b1222536 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20150807.ebuild
@@ -33,5 +33,5 @@ src_install() {
 	insinto /usr/share/repeatmasker/Libraries
 	doins "${S}"/RepeatMaskerLib.embl
 	dodoc README
-	dohtml README.html
+	dodoc README.html
 }

diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
index 2fb5b1002..98521c4ba 100644
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
+++ b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20160829.ebuild
@@ -33,5 +33,5 @@ src_install() {
 	insinto /usr/share/repeatmasker/Libraries
 	doins "${S}"/RepeatMaskerLib.embl
 	dodoc README
-	dohtml README.html
+	dodoc README.html
 }