[gentoo-commits] proj/sci:master commit in: sci-biology/NGSTools/

[gentoo-commits] proj/sci:master commit in: sci-biology/NGSTools/

[Martin Mokrejs]

commit:     042beb5534b88ea134abdd742d585a287ccffeec
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 21:48:59 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 21:48:59 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=042beb55

sci-biology/cgview-bin: new package, needs java team help

---
 sci-biology/NGSTools/ChangeLog             | 10 ++++++++++
 sci-biology/NGSTools/NGSTools-2.0.5.ebuild | 21 +++++++++++++++++++++
 sci-biology/NGSTools/metadata.xml          |  9 +++++++++
 3 files changed, 40 insertions(+)

diff --git a/sci-biology/NGSTools/ChangeLog b/sci-biology/NGSTools/ChangeLog
new file mode 100644
index 0000000..c54ae14
--- /dev/null
+++ b/sci-biology/NGSTools/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/NGSTools
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*NGSTools-2.0.5 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +NGSTools-2.0.5.ebuild, +metadata.xml:
+  new package, needs java team help
+

diff --git a/sci-biology/NGSTools/NGSTools-2.0.5.ebuild b/sci-biology/NGSTools/NGSTools-2.0.5.ebuild
new file mode 100644
index 0000000..44ed15a
--- /dev/null
+++ b/sci-biology/NGSTools/NGSTools-2.0.5.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-2 java-ant-2 eutils
+
+S="${PV/-/_}"
+
+DESCRIPTION="Next Generation Sequencing Eclipse Plugin (CNV and indel discovery), aka NGSEP"
+HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home"
+SRC_URI="http://sourceforge.net/projects/ngsep/files/SourceCode/NGSTools_2.0.5.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-util/eclipse-sdk"
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/NGSTools/metadata.xml b/sci-biology/NGSTools/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/NGSTools/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/NGSTools/

[Martin Mokrejs]

commit:     6d35d6134317057345c6c80f77d35fa937083219
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 28 21:41:36 2019 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 28 21:41:36 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6d35d613

sci-biology/NGSTools: renamed into NGSEPcore and NGSEPplugin

 sci-biology/NGSTools/NGSTools-2.0.5.ebuild | 20 --------------------
 sci-biology/NGSTools/metadata.xml          | 15 ---------------
 2 files changed, 35 deletions(-)

diff --git a/sci-biology/NGSTools/NGSTools-2.0.5.ebuild b/sci-biology/NGSTools/NGSTools-2.0.5.ebuild
deleted file mode 100644
index 862983fec..000000000
--- a/sci-biology/NGSTools/NGSTools-2.0.5.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit java-pkg-2 java-ant-2 eutils
-
-S="${PV/-/_}"
-
-DESCRIPTION="Next Generation Sequencing Eclipse Plugin (CNV and indel discovery), aka NGSEP"
-HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home"
-SRC_URI="http://sourceforge.net/projects/ngsep/files/SourceCode/NGSTools_2.0.5.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-util/eclipse-sdk"
-RDEPEND="${DEPEND}"

diff --git a/sci-biology/NGSTools/metadata.xml b/sci-biology/NGSTools/metadata.xml
deleted file mode 100644
index 642261079..000000000
--- a/sci-biology/NGSTools/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">ngsep</remote-id>
-	</upstream>
-</pkgmetadata>