From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 757C5138334 for ; Mon, 25 Mar 2019 12:16:22 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 36501E086F; Mon, 25 Mar 2019 12:16:21 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id EBF2CE086F for ; Mon, 25 Mar 2019 12:16:19 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 5813B335D2F for ; Mon, 25 Mar 2019 12:16:18 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id B8996326 for ; Mon, 25 Mar 2019 12:16:15 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1553516159.868fbe5eeaa38a05f1ae2775a286b8d2ae651572.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-blast+/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild X-VCS-Directories: sci-biology/ncbi-blast+/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 868fbe5eeaa38a05f1ae2775a286b8d2ae651572 X-VCS-Branch: master Date: Mon, 25 Mar 2019 12:16:15 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 5a8c6490-542a-4ad9-a8db-a08ff0fef739 X-Archives-Hash: 0045932b4ab5da552d9776ed8036390c commit: 868fbe5eeaa38a05f1ae2775a286b8d2ae651572 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Mon Mar 25 12:15:59 2019 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Mar 25 12:15:59 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=868fbe5e sci-biology/ncbi-blast+: EAPI7 bump, remove unused variable Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs fold.natur.cuni.cz> sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild | 8 ++++---- sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild | 8 ++++---- sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild | 6 +++--- .../{ncbi-blast+-2.6.0.ebuild => ncbi-blast+-2.8.1.ebuild} | 9 +++++---- 4 files changed, 16 insertions(+), 15 deletions(-) diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild index dd6f3444f..d6c529b57 100644 --- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild +++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild @@ -1,13 +1,12 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 PYTHON_COMPAT=( python2_7 ) inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs -MY_PV="2.2.30" MY_P="ncbi-blast-${PV}+-src" # workdir/ncbi-blast-2.2.30+-src # ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz @@ -134,6 +133,7 @@ src_prepare() { # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch # eautoconf # keep it disabled until we can ensure 2.59 is installed # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support + default } # possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site @@ -279,7 +279,7 @@ src_configure() { --prefix="${EPREFIX}/usr" \ --libdir=/usr/lib64 \ --with-flat-makefile \ - ${myconf[@]} || die + ${myconf[@]} || die "gcc 7 or newer were not used by upstream hence unsupported" #--without-debug \ # --with-bin-release \ # --with-bincopy \ diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild index 4622ac976..40d060bf5 100644 --- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild +++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild @@ -1,13 +1,12 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 PYTHON_COMPAT=( python2_7 ) inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs -MY_PV="2.2.30" MY_P="ncbi-blast-${PV}+-src" # workdir/ncbi-blast-2.2.30+-src # ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz @@ -137,6 +136,7 @@ src_prepare() { # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch # eautoconf # keep it disabled until we can ensure 2.59 is installed # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support + default } # possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site @@ -282,7 +282,7 @@ src_configure() { --prefix="${EPREFIX}/usr" \ --libdir=/usr/lib64 \ --with-flat-makefile \ - ${myconf[@]} || die + ${myconf[@]} || die "gcc 7 or newer were not used by upstream hence unsupported" #--without-debug \ # --with-bin-release \ # --with-bincopy \ diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild index 6adbefad3..0a826b779 100644 --- a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild +++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild @@ -1,13 +1,12 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 PYTHON_COMPAT=( python2_7 ) inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs -MY_PV="2.3.0" MY_P="ncbi-blast-${PV}+-src" # workdir/ncbi-blast-2.2.30+-src # ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz @@ -138,6 +137,7 @@ src_prepare() { # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch # eautoconf # keep it disabled until we can ensure 2.59 is installed # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support + default } # possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild similarity index 99% copy from sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild copy to sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild index 6adbefad3..c91a5d490 100644 --- a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild +++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild @@ -1,13 +1,12 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 PYTHON_COMPAT=( python2_7 ) inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs -MY_PV="2.3.0" MY_P="ncbi-blast-${PV}+-src" # workdir/ncbi-blast-2.2.30+-src # ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz @@ -67,7 +66,8 @@ DEPEND=" xpm? ( x11-libs/libXpm ) dev-libs/lzo app-arch/bzip2 - dev-libs/libpcre" + dev-libs/libpcre + dev-db/lmdb" # USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge # Intentionally omitted USE flags: # ftds? ( dev-db/freetds ) # support for outside FreeTDS installations is currently broken. @@ -138,6 +138,7 @@ src_prepare() { # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch # eautoconf # keep it disabled until we can ensure 2.59 is installed # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support + default } # possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site