From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id D71BC138334 for ; Mon, 25 Mar 2019 09:30:31 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id BAC31E0A88; Mon, 25 Mar 2019 09:30:30 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 98F07E0A88 for ; Mon, 25 Mar 2019 09:30:30 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id EEF72335CFB for ; Mon, 25 Mar 2019 09:30:26 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id DEF5457B for ; Mon, 25 Mar 2019 09:30:24 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1553505931.d54980d211f803108c958cd6b255827a0f9bd2a5.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/tablet/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/tablet/tablet-1.15.09.01.ebuild X-VCS-Directories: sci-biology/tablet/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: d54980d211f803108c958cd6b255827a0f9bd2a5 X-VCS-Branch: master Date: Mon, 25 Mar 2019 09:30:24 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 1dc2d4dd-cb23-44b1-887e-75617a05c3b7 X-Archives-Hash: a95f3fee5c3ed5473e2ad35ca756eec4 commit: d54980d211f803108c958cd6b255827a0f9bd2a5 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Mon Mar 25 09:25:31 2019 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Mar 25 09:25:31 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d54980d2 sci-biology/tablet: drop old version sci-biology/tablet/tablet-1.15.09.01.ebuild | 51 ----------------------------- 1 file changed, 51 deletions(-) diff --git a/sci-biology/tablet/tablet-1.15.09.01.ebuild b/sci-biology/tablet/tablet-1.15.09.01.ebuild deleted file mode 100644 index c0b67d139..000000000 --- a/sci-biology/tablet/tablet-1.15.09.01.ebuild +++ /dev/null @@ -1,51 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit java-pkg-2 java-ant-2 python-r1 - -# [ "$PV" == "9999" ] && inherit subversion -inherit subversion - -DESCRIPTION="Viewer of next generation sequence assemblies and alignments" -HOMEPAGE="http://bioinf.scri.ac.uk/tablet/" -if [ "$PV" == "9999" ]; then - ESVN_REPO_URI="http://ics.hutton.ac.uk/svn/tablet/trunk/" - KEYWORDS="" -else - ESVN_REPO_URI="http://ics.hutton.ac.uk/svn/tablet/tags/${PV}" - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="Tablet" -SLOT="0" -IUSE="" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="${PYTHON_DEPS} - >=virtual/jdk-1.8:*" -RDEPEND="${PYTHON_DEPS} - >=virtual/jre-1.8:*" -# contains bundled sqlite-jdbc-3.8.6.jar, samtools-linux64.jar, picard.jar -# sqlite-jdbc-3.8.6.jar is not dev-db/sqlite:3 and samtools-linux64.jar is not sci-biology/samtools either -# replacing picard.jar with a symlink to picard.jar from sci-biology.picard does not help either - -S="${WORKDIR}" - -src_install() { - java-pkg_dojar lib/tablet.jar - java-pkg_dolauncher ${PN} - java-pkg_dojar lib/tablet-resources.jar - java-pkg_dojar lib/flamingo.jar - java-pkg_dojar lib/scri-commons.jar - java-pkg_dojar lib/samtools*.jar - java-pkg_dojar lib/picard*.jar - java-pkg_dojar lib/sqlite-jdbc*.jar - - echo "PATH=${EPREFIX}/usr/share/${PN}/" > 99Tablet - doenvd 99Tablet -}