[gentoo-commits] proj/sci:master commit in: sci-biology/blasr/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     f093654801e9bb7ad831c30a592f1da016ed9aca
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 17 12:38:17 2019 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan 17 12:38:17 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f0936548

sci-biology/blasr: partial improvements of the ebuild

Package-Manager: Portage-2.3.55, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>

 sci-biology/blasr/blasr-9999.ebuild | 30 ++++++++++++++++++++++--------
 1 file changed, 22 insertions(+), 8 deletions(-)

diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
index 2b1716bdd..3fe868450 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -16,17 +16,31 @@ SLOT="0"
 IUSE="hdf5"
 KEYWORDS=""
 
-DEPEND="hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
+CDEPEND="
+	dev-util/meson
+	dev-util/ninja
+	dev-util/cmake
+	dev-util/pkgconfig"
+# needs libblasr
+DEPEND="
+	sci-biology/pbbam
+	dev-libs/boost:=[threads]
+	hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
 RDEPEND=""
 
 S="${WORKDIR}/blasr-9999"
 
-src_configure(){
-	if use hdf5; then \
-		python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
-	else
-		python ./configure.py --shared --sub --no-pbbam || die
-	fi
+#src_configure(){
+#	if use hdf5; then \
+#		python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
+#	else
+#		python ./configure.py --shared --sub --no-pbbam || die
+#	fi
+#}
+
+src_compile(){
+	bash scripts/ci/build.sh || die
+	# BUG: meson.build:54:0: ERROR:  Dependency "pbbam" not found, tried pkgconfig and cmake
 }
 
 src_install() {