From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id D4B19138334 for ; Mon, 19 Nov 2018 04:16:54 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 8F2DDE0997; Mon, 19 Nov 2018 04:16:53 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 5727FE0997 for ; Mon, 19 Nov 2018 04:16:52 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 45293335C36 for ; Mon, 19 Nov 2018 04:16:51 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 7A9E343A for ; Mon, 19 Nov 2018 04:16:49 +0000 (UTC) From: "Justin Bronder" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Bronder" Message-ID: <1542600994.2c00a30e20f3fa293db9d0e4216369dff0e3beb0.jsbronder@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sys-cluster/openmpi/ X-VCS-Repository: proj/sci X-VCS-Files: sys-cluster/openmpi/openmpi-4.0.0.ebuild X-VCS-Directories: sys-cluster/openmpi/ X-VCS-Committer: jsbronder X-VCS-Committer-Name: Justin Bronder X-VCS-Revision: 2c00a30e20f3fa293db9d0e4216369dff0e3beb0 X-VCS-Branch: master Date: Mon, 19 Nov 2018 04:16:49 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 53642c24-7306-491f-a3f7-7f4f9d25190c X-Archives-Hash: edca96da0348ff101fe7a72c8b63a2ff commit: 2c00a30e20f3fa293db9d0e4216369dff0e3beb0 Author: Justin Bronder gentoo org> AuthorDate: Mon Nov 19 04:13:27 2018 +0000 Commit: Justin Bronder gentoo org> CommitDate: Mon Nov 19 04:16:34 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2c00a30e sys-cluster/openmpi: bump 4.0.0 Also migrate to eapi7-ver. Blocked on going directly to EAPI 7 by java eclasses. Package-Manager: Portage-2.3.49, Repoman-2.3.11 Signed-off-by: Justin Bronder gentoo.org> sys-cluster/openmpi/openmpi-4.0.0.ebuild | 172 +++++++++++++++++++++++++++++++ 1 file changed, 172 insertions(+) diff --git a/sys-cluster/openmpi/openmpi-4.0.0.ebuild b/sys-cluster/openmpi/openmpi-4.0.0.ebuild new file mode 100644 index 000000000..8e575946c --- /dev/null +++ b/sys-cluster/openmpi/openmpi-4.0.0.ebuild @@ -0,0 +1,172 @@ +# Copyright 1999-2018 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit cuda eapi7-ver flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib-minimal mpi + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux" +IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java numa romio + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + !sys-cluster/pmix +" + +CDEPEND=" + >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP},numa?] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) + $(mpi_imp_deplist)" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + MPI_ESELECT_FILE="eselect.mpi.openmpi" + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ECONF_SOURCE=${S} econf $(mpi_econf_args) \ + --sysconfdir="${EPREFIX}/etc/${PN}" \ + --enable-pretty-print-stacktrace \ + --enable-orterun-prefix-by-default \ + --with-hwloc="${EPREFIX}/usr" \ + --with-libltdl="${EPREFIX}/usr" \ + --with-libevent="${EPREFIX}/usr" \ + --enable-mpi-fortran=$(usex fortran all no) \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(multilib_native_use_enable java mpi-java) \ + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(multilib_native_use_with openmpi_rm_pbs tm) \ + $(multilib_native_use_with openmpi_rm_slurm slurm) +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm \ + "${ED}"/$(mpi_root)/usr/include/mpif* \ + "${ED}"/$(mpi_root)/usr/bin/mpif* \ + "${ED}"/$(mpi_root)/usr/bin/oshfort \ + "${ED}"/$(mpi_root)/usr/bin/shmemfort \ + || die + fi +} + +multilib_src_install_all() { + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die + fi + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + mpi_dodoc README AUTHORS NEWS VERSION + mpi_imp_add_eselect +}