* [gentoo-commits] proj/sci:master commit in: sci-mathematics/gambit/, sci-visualization/v_sim/, sci-libs/scikits_image/, ...
@ 2018-10-27 21:16 Justin Lecher
0 siblings, 0 replies; only message in thread
From: Justin Lecher @ 2018-10-27 21:16 UTC (permalink / raw
To: gentoo-commits
commit: 5cefc888f78905782495d48eef860c64f23bf319
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Oct 27 21:08:01 2018 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Oct 27 21:08:01 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5cefc888
Drop obsolete packages
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-geosciences/qgis/metadata.xml | 19 ----
sci-geosciences/qgis/qgis-9999.ebuild | 109 ----------------------
sci-libs/libgeodecomp/files/cmake.patch | 17 ----
sci-libs/libgeodecomp/libgeodecomp-9999.ebuild | 75 ---------------
sci-libs/libgeodecomp/metadata.xml | 41 --------
sci-libs/scikits_image/metadata.xml | 19 ----
sci-libs/scikits_image/scikits_image-9999.ebuild | 52 -----------
sci-mathematics/gambit/gambit-0.2010.09.01.ebuild | 32 -------
sci-mathematics/gambit/metadata.xml | 20 ----
sci-visualization/v_sim/metadata.xml | 17 ----
sci-visualization/v_sim/v_sim-3.6.0.ebuild | 84 -----------------
11 files changed, 485 deletions(-)
diff --git a/sci-geosciences/qgis/metadata.xml b/sci-geosciences/qgis/metadata.xml
deleted file mode 100644
index b2ca3f8c7..000000000
--- a/sci-geosciences/qgis/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-geosciences@gentoo.org</email>
- <name>Gentoo Geosciences Project</name>
- </maintainer>
- <longdescription lang="en">
-Quantum GIS (QGIS) is a user friendly Open Source Geographic
-Information System (GIS). QGIS supports vector, raster, and database
-formats. QGIS lets you browse and create map data on your
-computer. It supports many common spatial data formats (e.g. ESRI
-ShapeFile, geotiff). QGIS supports plugins to do things like display
-tracks from your GPS.
-</longdescription>
- <use>
- <flag name="grass">Add support for <pkg>sci-geosciences/grass</pkg></flag>
- </use>
-</pkgmetadata>
diff --git a/sci-geosciences/qgis/qgis-9999.ebuild b/sci-geosciences/qgis/qgis-9999.ebuild
deleted file mode 100644
index 53ae4df98..000000000
--- a/sci-geosciences/qgis/qgis-9999.ebuild
+++ /dev/null
@@ -1,109 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-PYTHON_REQ_USE="sqlite"
-
-inherit cmake-utils gnome2-utils multilib python-single-r1 subversion eutils
-
-DESCRIPTION="User friendly Geographic Information System"
-HOMEPAGE="http://www.qgis.org/"
-ESVN_REPO_URI="http://svn.osgeo.org/qgis/trunk/qgis"
-SRC_URI="examples? ( http://download.osgeo.org/qgis/data/qgis_sample_data.tar.gz )"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS=""
-IUSE="examples gps grass gsl postgres python sqlite"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-RDEPEND="
- >=sci-libs/gdal-1.6.1[geos,postgres?,python?,sqlite?]
- dev-qt/qtcore:4[qt3support]
- dev-qt/qtgui:4
- dev-qt/qtsvg:4
- dev-qt/qtsql:4
- dev-qt/qtwebkit:4
- sci-libs/geos
- gps? (
- dev-libs/expat
- sci-geosciences/gpsbabel
- x11-libs/qwt:6=
- )
- grass? ( >=sci-geosciences/grass-6.4.0_rc6[postgres?,python?,sqlite?] )
- gsl? ( sci-libs/gsl )
- postgres? ( dev-db/postgresql:* )
- python? (
- ${PYTHON_DEPS}
- dev-python/PyQt4[sql,svg,${PYTHON_USEDEP}]
- dev-python/sip[${PYTHON_USEDEP}] )
- sqlite? ( dev-db/sqlite:3 )"
-
-DEPEND="${RDEPEND}
- sys-devel/bison
- sys-devel/flex"
-
-pkg_setup() {
- python-single-r1_pkg_setup
-}
-
-src_configure() {
- local mycmakeargs
- mycmakeargs+=(
- "-DQGIS_MANUAL_SUBDIR=/share/man/"
- "-DBUILD_SHARED_LIBS=ON"
- "-DBINDINGS_GLOBAL_INSTALL=ON"
- "-DQGIS_LIB_SUBDIR=$(get_libdir)"
- "-DQGIS_PLUGIN_SUBDIR=$(get_libdir)/qgis"
- "-DWITH_INTERNAL_SPATIALITE:BOOL=OFF"
- $(cmake-utils_use_with postgres POSTGRESQL)
- $(cmake-utils_use_with grass)
- $(cmake-utils_use_with gps EXPAT)
- $(cmake-utils_use_with gps QWT)
- $(cmake-utils_use_with gsl)
- $(cmake-utils_use_with python BINDINGS)
- $(cmake-utils_use python BINDINGS_GLOBAL_INSTALL)
- $(cmake-utils_use_with spatialite SPATIALITE)
- $(cmake-utils_use_enable test TESTS)
- $(usex grass "-DGRASS_PREFIX=/usr/" "")
- )
-
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
- dodoc BUGS ChangeLog CODING README
-
- newicon -s 128 images/icons/qgis-icon.png qgis.png
- make_desktop_entry qgis "Quantum GIS " qgis
-
- if use examples; then
- insinto /usr/share/doc/${PF}/examples
- doins -r "${WORKDIR}"/qgis_sample_data/*
- fi
- python_fix_shebang "${D}"/usr/share/qgis/grass/scripts
- python_optimize "${D}"/usr/share/qgis/python/plugins \
- "${D}"/$(python_get_sitedir)/qgis \
- "${D}"/usr/share/qgis/grass/scripts
-}
-
-pkg_preinst() {
- gnome2_icon_savelist
-}
-
-pkg_postinst() {
- if use postgres; then
- elog "If you don't intend to use an external PostGIS server"
- elog "you should install:"
- elog " dev-db/postgis"
- fi
- gnome2_icon_cache_update
-}
-
-pkg_postrm() {
- gnome2_icon_cache_update
-}
diff --git a/sci-libs/libgeodecomp/files/cmake.patch b/sci-libs/libgeodecomp/files/cmake.patch
deleted file mode 100644
index de6e42f41..000000000
--- a/sci-libs/libgeodecomp/files/cmake.patch
+++ /dev/null
@@ -1,17 +0,0 @@
-diff -ru libgeodecomp-0.1.0/src/util.cmake libgeodecomp-0.1.0-nju/src/util.cmake
---- libgeodecomp-0.1.0/src/util.cmake 2012-06-27 12:26:46.000000000 +0200
-+++ libgeodecomp-0.1.0-nju/src/util.cmake 2013-01-29 20:52:43.306376967 +0100
-@@ -54,11 +54,11 @@
- endforeach(i)
-
- if(STRIPPED_SOURCES)
-- list(SORT STRIPPED_SOURCES ${STRIPPED_SOURCES})
-+ list(SORT STRIPPED_SOURCES)
- endif(STRIPPED_SOURCES)
-
- if(STRIPPED_HEADERS)
-- list(SORT STRIPPED_HEADERS ${STRIPPED_HEADERS})
-+ list(SORT STRIPPED_HEADERS)
- endif(STRIPPED_HEADERS)
-
- set(MY_AUTO "set(SOURCES \${SOURCES}\n")
diff --git a/sci-libs/libgeodecomp/libgeodecomp-9999.ebuild b/sci-libs/libgeodecomp/libgeodecomp-9999.ebuild
deleted file mode 100644
index 08622044c..000000000
--- a/sci-libs/libgeodecomp/libgeodecomp-9999.ebuild
+++ /dev/null
@@ -1,75 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-if [ ${PV} == "9999" ] ; then
- _SCM=mercurial
- EHG_REPO_URI="http://bitbucket.org/gentryx/libgeodecomp"
- SRC_URI=""
- KEYWORDS=""
- CMAKE_USE_DIR="${S}"
-else
- SRC_URI="http://www.libgeodecomp.org/archive/${P}.tar.bz2"
- KEYWORDS="~amd64 ~ppc ~x86"
- S="${WORKDIR}/${P}"
-fi
-
-inherit cmake-utils cuda ${_SCM}
-
-DESCRIPTION="An auto-parallelizing library to speed up computer simulations"
-HOMEPAGE="http://www.libgeodecomp.org"
-
-SLOT="0"
-LICENSE="Boost-1.0"
-IUSE="cuda doc hpx mpi opencl opencv qt4 scotch threads visit"
-
-RDEPEND="
- >=dev-libs/boost-1.48
- =dev-libs/libflatarray-9999
- cuda? ( dev-util/nvidia-cuda-toolkit )
- hpx? ( =sys-cluster/hpx-9999 )
- mpi? ( virtual/mpi )
- opencl? ( virtual/opencl )
- opencv? ( media-libs/opencv )
- qt4? ( dev-qt/qtgui:4 )
- scotch? ( sci-libs/scotch )
- visit? ( sci-visualization/visit )"
-DEPEND="${RDEPEND}
- doc? ( app-doc/doxygen )"
-
-src_prepare() {
- rm -rf {lib,src}/libflatarray || die
-}
-
-src_configure() {
- local mycmakeargs=(
- -DWITH_BOOST_SERIALIZATION=true
- $(cmake-utils_use_with cuda CUDA)
- $(cmake-utils_use_with hpx HPX)
- $(cmake-utils_use_with mpi BOOST_MPI)
- $(cmake-utils_use_with mpi MPI)
- $(cmake-utils_use_with opencl OPENCL)
- $(cmake-utils_use_with opencv OPENCV)
- $(cmake-utils_use_with qt4 QT)
- $(cmake-utils_use_with scotch SCOTCH)
- $(cmake-utils_use_with threads THREADS)
- $(cmake-utils_use_with visit VISIT)
- )
- cmake-utils_src_configure
-}
-
-src_compile() {
- cmake-utils_src_compile
- use doc && cmake-utils_src_make doc
-}
-
-src_install() {
- DOCS=( README )
- use doc && HTML_DOCS=( doc/html/* )
- cmake-utils_src_install
-}
-
-src_test() {
- cmake-utils_src_make test
-}
diff --git a/sci-libs/libgeodecomp/metadata.xml b/sci-libs/libgeodecomp/metadata.xml
deleted file mode 100644
index b1b9ce281..000000000
--- a/sci-libs/libgeodecomp/metadata.xml
+++ /dev/null
@@ -1,41 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <longdescription>
-LibGeoDecomp is an auto-parallelizing library to speed up stencil
-code based computer simulations. It runs on virtually all current
-architectures, be it multi-cores, GPUs, or large scale MPI
-clusters.
-</longdescription>
- <maintainer type="person">
- <email>gentryx@gmx.de</email>
- </maintainer>
- <maintainer type="project">
- <email>cluster@gentoo.org</email>
- <name>Gentoo Cluster Project</name>
- </maintainer>
- <use>
- <flag name="cuda">
-Enables plugins for NVIDIA GPUs (e.g. CUDASimulator and CUDAStepper)
-</flag>
- <flag name="hpx">
-Activates the HPX backend as an alternative to the usual MPI backends.
-</flag>
- <flag name="opencl">
-Builds those plugins which can offload to OpenCL devices.
-</flag>
- <flag name="opencv">
-Some input components can read from cameras etc. via OpenCV
-</flag>
- <flag name="qt4">
-Adds the QTWidgetWriter, which allows in situ visualization of a
-running simulation.
-</flag>
- <flag name="scotch">
-Optinally use Scotch for domain decomposition.
-</flag>
- <flag name="visit">
-Add in situ visualization for big simulations via VisIt.
-</flag>
- </use>
-</pkgmetadata>
diff --git a/sci-libs/scikits_image/metadata.xml b/sci-libs/scikits_image/metadata.xml
deleted file mode 100644
index 5ec0e96ff..000000000
--- a/sci-libs/scikits_image/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <longdescription lang="en">
-This SciKit (toolkit for SciPy) includes useful image processing
-algorithms for use with Python and NumPy. While SciPy’s ndimage
-provides low-level manipulation, scikits.image centres around
-algorithms and applications.
-</longdescription>
- <use>
- <flag name="freeimage">Enable support for image i/o via
-<pkg>media-libs/freeimage</pkg></flag>
- <flag name="pyamg">Enable support for algebraic solvers via <pkg>dev-python/pyamg</pkg></flag>
- </use>
-</pkgmetadata>
diff --git a/sci-libs/scikits_image/scikits_image-9999.ebuild b/sci-libs/scikits_image/scikits_image-9999.ebuild
deleted file mode 100644
index e00facde2..000000000
--- a/sci-libs/scikits_image/scikits_image-9999.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 python3_{3,4} )
-
-inherit distutils-r1 eutils git-r3 virtualx
-
-DESCRIPTION="Image processing routines for SciPy"
-HOMEPAGE="http://scikit-image.org/"
-EGIT_REPO_URI="https://github.com/scikit-image/scikit-image.git"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS=""
-IUSE="doc freeimage gtk pyamg qt4 test"
-
-RDEPEND="
- >=dev-python/matplotlib-1.1.0[${PYTHON_USEDEP}]
- >=dev-python/networkx-1.8[${PYTHON_USEDEP}]
- >=dev-python/numpy-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/pillow-1.7.8[${PYTHON_USEDEP}]
- >=dev-python/six-1.3[${PYTHON_USEDEP}]
- >=sci-libs/scipy-0.9[sparse,${PYTHON_USEDEP}]
- freeimage? ( media-libs/freeimage )
- gtk? ( dev-python/pygtk[$(python_gen_usedep 'python2*')] )
- pyamg? ( dev-python/pyamg[$(python_gen_usedep 'python2*')] )
- qt4? ( dev-python/PyQt4[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- >=dev-python/cython-0.21[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- test? (
- dev-python/nose[${PYTHON_USEDEP}]
- )"
-
-DOCS=( CONTRIBUTORS.txt CONTRIBUTING.txt README.md DEPENDS.txt RELEASE.txt TASKS.txt )
-
-python_test() {
- distutils_install_for_testing
- mkdir for_test && cd for_test || die
- echo "backend : Agg" > matplotlibrc || die
- echo "backend.qt4 : PyQt4" >> matplotlibrc || die
- VIRTUALX_COMMAND=nosetests
- MPLCONFIGDIR=. virtualmake --exe -v skimage || die
-}
-
-pkg_postinst() {
- optfeature "FITS io capability" dev-python/astropy
- #optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
- #optfeature "io plugin providing most standard formats" dev-python/imread
-}
diff --git a/sci-mathematics/gambit/gambit-0.2010.09.01.ebuild b/sci-mathematics/gambit/gambit-0.2010.09.01.ebuild
deleted file mode 100644
index 0d78c8971..000000000
--- a/sci-mathematics/gambit/gambit-0.2010.09.01.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-WX_GTK_VER="2.8"
-
-inherit wxwidgets
-
-DESCRIPTION="Gambit: Software Tools for Game Theory"
-HOMEPAGE="http://www.gambit-project.org/doc/index.html"
-SRC_URI="mirror://sourceforge/project/${PN}/${PN}-stable/${PV}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="X"
-
-DEPEND="
- X? (
- x11-libs/wxGTK:2.8[X]
- x11-libs/gtk+:2 )"
-RDEPEND="${DEPEND}"
-
-src_configure() {
- local myconf
- if use amd64; then
- myconf='--disable-enumpoly'
- fi
- econf "${myconf}" \
- $(use_enable X gui)
-}
diff --git a/sci-mathematics/gambit/metadata.xml b/sci-mathematics/gambit/metadata.xml
deleted file mode 100644
index c19ddfa46..000000000
--- a/sci-mathematics/gambit/metadata.xml
+++ /dev/null
@@ -1,20 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>dongxuli2011@gmail.com</email>
- <name>Dongxu Li</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-mathematics@gentoo.org</email>
- <name>Gentoo Mathematics Project</name>
- </maintainer>
- <use>
- <flag name="X">
-Enable gui support using wxWidgets.
-</flag>
- </use>
- <upstream>
- <remote-id type="sourceforge">gambit</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-visualization/v_sim/metadata.xml b/sci-visualization/v_sim/metadata.xml
deleted file mode 100644
index 6a2245773..000000000
--- a/sci-visualization/v_sim/metadata.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>dongxuli2011@gmail.com</email>
- </maintainer>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <use>
- <flag name="abinit">Add support for ABINIT file formats <pkg>sci-physics/abinit</pkg></flag>
- <flag name="cube">Add support plug-in support for Cube files (densities and structures)</flag>
- <flag name="openbabel">Add support for ABINIT file formats <pkg>sci-chemistry/openbabel</pkg></flag>
- <flag name="xsf">plug-in support for files that follow the XCrysDen format for structural positions and densities</flag>
- </use>
-</pkgmetadata>
diff --git a/sci-visualization/v_sim/v_sim-3.6.0.ebuild b/sci-visualization/v_sim/v_sim-3.6.0.ebuild
deleted file mode 100644
index cb94d01f8..000000000
--- a/sci-visualization/v_sim/v_sim-3.6.0.ebuild
+++ /dev/null
@@ -1,84 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils multilib
-
-DESCRIPTION="Displays atomic structures such as crystals, gain boudaries, molecules"
-HOMEPAGE="http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/index.en.html"
-SRC_URI="http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/${P}.tar.bz2"
-
-LICENSE="CeCILL-1.1"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-# doc: Adds developer documentation (/usr/share/doc/${PF}/APIreference/)
-# Example files are copied even when USE='-doc'
-# debug: Adds console debug messages. This is really verbose.
-IUSE="abinit blas cube debug doc netcdf openbabel xsf"
-
-RDEPEND="
- x11-libs/gtk+:2
- dev-libs/glib:2
- x11-libs/pango
- media-libs/libpng:0=
- virtual/opengl"
-DEPEND="${RDEPEND}
- abinit? ( sci-physics/abinit sci-libs/etsf_io )
- blas? ( virtual/blas )
- netcdf? ( sci-libs/netcdf )
- openbabel? ( sci-chemistry/openbabel )
- doc? ( >=dev-util/gtk-doc-1.4-r1 )"
-
-src_prepare() {
- # The author follows Debian conventions, hence the example files and docs
- # end up in /usr/share/doc/${PN} instead of /usr/share/doc/${PF}. We
- # correct this here.
- sed -i -e "s@/doc/.\${package}.@/doc/${PF}@g" -e "s@/doc/\$PACKAGE@/doc/${PF}@g" configure \
- || die "sed failed on tweaking configure file"
- # TODO: test if this can be done via --docdir
-
- # The /share/ directories are #define in the code and must be adapted.
- sed -i -e "s:/usr/local/:/usr/:g" src/visu_basic.c || die "sed failed on updating directories in visu_basic.c"
-}
-
-src_configure() {
- if use doc ; then
- gtkdocize || die
- fi
- local MY_CONF="--without-etsf-io"
- use abinit && MY_CONF="--with-etsf-io=/usr --with-etsf-io-include=/usr/lib/finclude --with-etsf-io-libdir=/usr/$(get_libdir)"
- econf "${MY_CONF}" \
- $(use_with blas) \
- $(use_with cube) \
- $(use_with netcdf) \
- $(use_with openbabel) \
- $(use_with xsf) \
- $(use_enable doc gtk-doc) \
- $(use_enable debug debug-messages)
-}
-
-src_compile() {
- HOME="${S}" emake
-}
-
-pkg_postinst() {
- einfo "Example files are in /usr/share/doc/${PF}/examples"
- einfo "(even with USE='-doc')"
- einfo ""
- einfo "The global v_sim config files are in /usr/share/${PN}/"
- einfo "There are a few options which can only be configured in these files"
- einfo "and not through the UI. For example, one can specify different"
- einfo "colors for the box and the axes in the files, but in the UI one can"
- einfo "only change them together."
- einfo ""
- einfo "V_sim uses by default its own weird gtk skin. You can edit the"
- einfo "skin settings in /usr/share/${PN}/v_sim.rc"
- einfo "You can change the skin file used in the config file v_sim.par:"
- einfo "Go to the line 'config_skin[gtk]: V_Sim'. The argument may be:"
- einfo "'V_Sim', 'none' or the path to your own rc file. The keyword "
- einfo "'V_Sim' stands for the default rc file, /usr/share/v_sim/v_sim.rc"
- einfo "If you choose 'none' or if you comment the line, your current"
- einfo "gtk skin will be used."
-}
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