[gentoo-commits] proj/sci:master commit in: sci-biology/gbench/

["Justin Lecher" <jlec@gentoo.org>]

commit:     e13c803fe9c9c8917720bf5d2e499bc2086c07b3
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Oct 27 12:32:32 2018 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Oct 27 12:32:32 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e13c803f

Drop broken package

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/gbench/gbench-2.11.7.ebuild | 89 ---------------------------------
 sci-biology/gbench/metadata.xml         |  8 ---
 2 files changed, 97 deletions(-)

diff --git a/sci-biology/gbench/gbench-2.11.7.ebuild b/sci-biology/gbench/gbench-2.11.7.ebuild
deleted file mode 100644
index 58631ce43..000000000
--- a/sci-biology/gbench/gbench-2.11.7.ebuild
+++ /dev/null
@@ -1,89 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-single-r1 wxwidgets
-
-DESCRIPTION="View and analyze genome sequences"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"
-SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz"
-
-LICENSE="public-domain"
-SLOT="0"
-KEYWORDS=""
-#KEYWORDS="~amd64 ~x86"
-IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
-	app-arch/bzip2
-	app-text/sablotron
-	dev-cpp/muParser
-	dev-libs/boost:=
-	dev-libs/expat
-	dev-libs/icu
-	dev-libs/libxslt
-	lzo? ( dev-libs/lzo )
-	dev-libs/xalan-c
-	dev-libs/xerces-c
-	dev-util/cppunit
-	media-libs/freetype
-	media-libs/giflib
-	media-libs/tiff:0=
-	|| ( sci-biology/ncbi-tools++ sci-biology/sra_sdk )
-	gnutls? ( net-libs/gnutls )
-	hdf5? ( sci-libs/hdf5 )
-	sys-fs/fuse:=
-	berkdb? ( >=sys-libs/db-4.3:* )
-	glut? ( virtual/glu )
-	opengl? ( virtual/opengl
-		media-libs/ftgl
-		media-libs/glew:= )
-	x11-libs/fltk
-	>=x11-libs/gtk+-2:*
-	x11-libs/wxGTK:*
-	mysql? ( virtual/mysql )
-	pcre? ( dev-libs/libpcre )
-	sqlite? ( dev-db/sqlite:3= )
-	ssl? ( dev-libs/openssl:0= )
-	sybase-ct? ( dev-db/freetds )
-	xml? ( dev-libs/libxml2:2= )
-	xpm? (
-		x11-libs/libXpm
-		virtual/jpeg:0=
-		media-libs/libpng:0=
-		sys-libs/zlib
-	)
-"
-DEPEND="${RDEPEND}"
-
-# recycle ebuild logic from ncbi-tools++
-
-S="${WORKDIR}"/gbench-src-"${PV}"
-
-src_configure(){
-	# configure: error: --mandir=/usr/share/man:  unknown option;  use --help to show usage
-	# configure: error: --infodir=/usr/share/info:  unknown option;  use --help to show usage
-	# configure: error: --datadir=/usr/share:  unknown option;  use --help to show usage
-	# configure: error: --sysconfdir=/etc:  unknown option;  use --help to show usage
-	# configure: error: --localstatedir=/var/lib:  unknown option;  use --help to show usage
-	./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" --libdir="${EPREFIX}/usr/$(get_libdir)" \
-		--without-downloaded-vdb \
-		CC="$(tc-getCC)" CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die
-}
-
-# Doh, it runs git during configure phase if it could not find NCBI SRA VDB
-# by executing ./scripts/common/add_vdb.sh which points to https://github.com/ncbi/ncbi-vdb
-# But, we already have sci-biology/sra_sdk which blocks sci-biology/ncbi-tools++
-# as some files overlap. Seems ncbi-vdb is yet another smaller subset of either
-# of the two?
-#
-# Same come checking out ncbi-vdb should be in ncbi-tools++-18.0.0 .
-#
-#   That behavior is entirely optional; you can suppress it by
-#   configuring the Toolkit --without-downloaded-vdb, --with-vdb=PATH (e.g.,
-#   --with-vdb=/usr), or --without-vdb altogether.

diff --git a/sci-biology/gbench/metadata.xml b/sci-biology/gbench/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/gbench/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>