[gentoo-commits] proj/sci:master commit in: sci-libs/ciftilib/, sci-libs/ciftilib/files/

[gentoo-commits] proj/sci:master commit in: sci-libs/ciftilib/, sci-libs/ciftilib/files/

[Horea Christian]

commit:     6a917c1243b83065c81e4d82c78a6022891df3ef
Author:     François Bissey <frp.bissey <AT> gmail <DOT> com>
AuthorDate: Fri Oct 19 21:31:02 2018 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Oct 20 21:29:18 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6a917c12

sci-libs/ciftilib: compatibility with nifti_io

Package-Manager: Portage-2.3.49, Repoman-2.3.11
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>

 sci-libs/ciftilib/ciftilib-1.5.3-r1.ebuild         | 61 ++++++++++++++++++++++
 sci-libs/ciftilib/ciftilib-1.5.3.ebuild            | 38 --------------
 .../files/ciftilib-1.5.3-openmp_in_pc.patch        | 12 +++++
 3 files changed, 73 insertions(+), 38 deletions(-)

diff --git a/sci-libs/ciftilib/ciftilib-1.5.3-r1.ebuild b/sci-libs/ciftilib/ciftilib-1.5.3-r1.ebuild
new file mode 100644
index 000000000..ad4894dd1
--- /dev/null
+++ b/sci-libs/ciftilib/ciftilib-1.5.3-r1.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="6"
+
+inherit cmake-utils
+
+DESCRIPTION="C++ Library for reading and writing CIFTI-2 and CIFTI-1 files"
+HOMEPAGE="https://github.com/Washington-University/CiftiLib"
+SRC_URI="https://github.com/Washington-University/CiftiLib/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="qt5"
+
+DEPEND="
+	dev-libs/boost
+	qt5? ( dev-qt/qtcore:5 )
+	!qt5? ( dev-cpp/libxmlpp:2.6 )
+	sys-libs/zlib
+	"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.5.3-openmp_in_pc.patch
+	)
+
+S="${WORKDIR}/CiftiLib-${PV}"
+
+#TODO: Enable doc building and installation
+
+src_prepare(){
+	# Make sure that CiftiLib headers and code can
+	# coexist with nifti_io headers.
+	# This takes care of the guard in the nifti1.h header
+	# found in both code base.
+	sed \
+		-e "s:NIFTI_:CIFTI_NIFTI__:g" \
+		-i `grep -rl NIFTI_ *`
+	sed \
+		-e "s:DT_:CIFTI_DT_:g" \
+		-i `grep -rl DT_ *`
+
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	local mycmakeargs=(-DBUILD_SHARED_LIBS=ON)
+	use qt5 || mycmakeargs+=(-DIGNORE_QT=TRUE)
+
+	cmake-utils_src_configure
+}
+
+src_test(){
+	#The testsuite is not designed to run in parallel
+	local myctestargs=(
+			-j1
+	)
+	cmake-utils_src_test
+}

diff --git a/sci-libs/ciftilib/ciftilib-1.5.3.ebuild b/sci-libs/ciftilib/ciftilib-1.5.3.ebuild
deleted file mode 100644
index fc473f38c..000000000
--- a/sci-libs/ciftilib/ciftilib-1.5.3.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="6"
-
-inherit cmake-utils
-
-DESCRIPTION="C++ Library for reading and writing CIFTI-2 and CIFTI-1 files"
-HOMEPAGE="https://github.com/Washington-University/CiftiLib"
-SRC_URI="https://github.com/Washington-University/CiftiLib/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="
-	dev-cpp/libxmlpp:2.6
-	dev-libs/boost
-	sys-libs/zlib
-	"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/CiftiLib-${PV}"
-
-src_configure() {
-	local mycmakeargs=(
-		-DIGNORE_QT=TRUE
-	)
-	cmake-utils_src_configure
-}
-
-src_test(){
-	local myctestargs=(
-				-j1
-		)
-	cmake-utils_src_test
-}

diff --git a/sci-libs/ciftilib/files/ciftilib-1.5.3-openmp_in_pc.patch b/sci-libs/ciftilib/files/ciftilib-1.5.3-openmp_in_pc.patch
new file mode 100644
index 000000000..6fd35159a
--- /dev/null
+++ b/sci-libs/ciftilib/files/ciftilib-1.5.3-openmp_in_pc.patch
@@ -0,0 +1,12 @@
+diff --git a/CiftiLib.pc.in b/CiftiLib.pc.in
+index 13cd78c..8db6c46 100644
+--- a/CiftiLib.pc.in
++++ b/CiftiLib.pc.in
+@@ -5,6 +5,6 @@ Name: CiftiLib
+ Description: C++ Library for reading and writing CIFTI-2 and CIFTI-1 files
+ Version: @CIFTILIB_VERSION@
+ URL: https://github.com/Washington-University/CiftiLib
+-Cflags: -I${includedir}/CiftiLib @CIFTILIB_PKGCONFIG_DEFINE@
++Cflags: -I${includedir}/CiftiLib @CIFTILIB_PKGCONFIG_DEFINE@ @OpenMP_CXX_FLAGS@
+ Libs: -L${libdir} -lCifti
+ @CIFTILIB_PKGCONFIG_REQUIRES_LINE@

[gentoo-commits] proj/sci:master commit in: sci-libs/ciftilib/, sci-libs/ciftilib/files/

[Andrew Ammerlaan]

commit:     fd57fb2706919f70446dc9e90e93ba9ba96179b3
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Jan 30 09:31:03 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Jan 30 09:31:03 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=fd57fb27

sci-libs/ciftilib: version bump, EAPI bump, cmake-utils-->cmake

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../{ciftilib-1.5.3-r1.ebuild => ciftilib-1.6.0.ebuild}  | 16 ++++++----------
 .../ciftilib/files/ciftilib-1.5.3-openmp_in_pc.patch     | 12 ------------
 2 files changed, 6 insertions(+), 22 deletions(-)

diff --git a/sci-libs/ciftilib/ciftilib-1.5.3-r1.ebuild b/sci-libs/ciftilib/ciftilib-1.6.0.ebuild
similarity index 84%
rename from sci-libs/ciftilib/ciftilib-1.5.3-r1.ebuild
rename to sci-libs/ciftilib/ciftilib-1.6.0.ebuild
index ad4894dd1..062fa44ef 100644
--- a/sci-libs/ciftilib/ciftilib-1.5.3-r1.ebuild
+++ b/sci-libs/ciftilib/ciftilib-1.6.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="6"
+EAPI=7
 
-inherit cmake-utils
+inherit cmake
 
 DESCRIPTION="C++ Library for reading and writing CIFTI-2 and CIFTI-1 files"
 HOMEPAGE="https://github.com/Washington-University/CiftiLib"
@@ -22,10 +22,6 @@ DEPEND="
 	"
 RDEPEND="${DEPEND}"
 
-PATCHES=(
-	"${FILESDIR}"/${PN}-1.5.3-openmp_in_pc.patch
-	)
-
 S="${WORKDIR}/CiftiLib-${PV}"
 
 #TODO: Enable doc building and installation
@@ -42,14 +38,14 @@ src_prepare(){
 		-e "s:DT_:CIFTI_DT_:g" \
 		-i `grep -rl DT_ *`
 
-	cmake-utils_src_prepare
+	cmake_src_prepare
 }
 
 src_configure() {
 	local mycmakeargs=(-DBUILD_SHARED_LIBS=ON)
 	use qt5 || mycmakeargs+=(-DIGNORE_QT=TRUE)
 
-	cmake-utils_src_configure
+	cmake_src_configure
 }
 
 src_test(){
@@ -57,5 +53,5 @@ src_test(){
 	local myctestargs=(
 			-j1
 	)
-	cmake-utils_src_test
+	cmake_src_test
 }

diff --git a/sci-libs/ciftilib/files/ciftilib-1.5.3-openmp_in_pc.patch b/sci-libs/ciftilib/files/ciftilib-1.5.3-openmp_in_pc.patch
deleted file mode 100644
index 6fd35159a..000000000
--- a/sci-libs/ciftilib/files/ciftilib-1.5.3-openmp_in_pc.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/CiftiLib.pc.in b/CiftiLib.pc.in
-index 13cd78c..8db6c46 100644
---- a/CiftiLib.pc.in
-+++ b/CiftiLib.pc.in
-@@ -5,6 +5,6 @@ Name: CiftiLib
- Description: C++ Library for reading and writing CIFTI-2 and CIFTI-1 files
- Version: @CIFTILIB_VERSION@
- URL: https://github.com/Washington-University/CiftiLib
--Cflags: -I${includedir}/CiftiLib @CIFTILIB_PKGCONFIG_DEFINE@
-+Cflags: -I${includedir}/CiftiLib @CIFTILIB_PKGCONFIG_DEFINE@ @OpenMP_CXX_FLAGS@
- Libs: -L${libdir} -lCifti
- @CIFTILIB_PKGCONFIG_REQUIRES_LINE@

[gentoo-commits] proj/sci:master commit in: sci-libs/ciftilib/, sci-libs/ciftilib/files/

[Horea Christian]

commit:     b8407e77728489cb3da158b77f0afb01291371f2
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jun 22 23:44:08 2021 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jun 22 23:44:08 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b8407e77

sci-libs/ciftilib: fixed boost version checking

Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-libs/ciftilib/ciftilib-1.6.0.ebuild            |  6 +++++
 .../ciftilib/files/ciftilib-1.6.0-version.patch    | 27 ++++++++++++++++++++++
 2 files changed, 33 insertions(+)

diff --git a/sci-libs/ciftilib/ciftilib-1.6.0.ebuild b/sci-libs/ciftilib/ciftilib-1.6.0.ebuild
index 062fa44ef..fffd4f9c1 100644
--- a/sci-libs/ciftilib/ciftilib-1.6.0.ebuild
+++ b/sci-libs/ciftilib/ciftilib-1.6.0.ebuild
@@ -24,6 +24,12 @@ RDEPEND="${DEPEND}"
 
 S="${WORKDIR}/CiftiLib-${PV}"
 
+# fix submitted upstream
+# https://github.com/Washington-University/CiftiLib/pull/23
+PATCHES=(
+	"${FILESDIR}/${P}-version.patch"
+)
+
 #TODO: Enable doc building and installation
 
 src_prepare(){

diff --git a/sci-libs/ciftilib/files/ciftilib-1.6.0-version.patch b/sci-libs/ciftilib/files/ciftilib-1.6.0-version.patch
new file mode 100644
index 000000000..e64a55f2f
--- /dev/null
+++ b/sci-libs/ciftilib/files/ciftilib-1.6.0-version.patch
@@ -0,0 +1,27 @@
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -83,18 +83,18 @@ ENDIF (NOT QT_FOUND)
+ INCLUDE_DIRECTORIES(${Boost_INCLUDE_DIRS})
+ SET(LIBS ${LIBS} ${Boost_LIBRARIES})
+ #boost quirks
+-IF (Boost_VERSION LESS 104400)
++IF (Boost_VERSION VERSION_LESS 1.44.00)
+     #absolute() was added in 1.44.0, with filesystem v3
+     ADD_DEFINITIONS(-DCIFTILIB_BOOST_NO_FSV3)
+-ENDIF (Boost_VERSION LESS 104400)
+-IF (Boost_VERSION LESS 104800)
++ENDIF (Boost_VERSION VERSION_LESS 1.44.00)
++IF (Boost_VERSION VERSION_LESS 1.48.00)
+     #canonical() was added in 1.48.0
+     ADD_DEFINITIONS(-DCIFTILIB_BOOST_NO_CANONICAL)
+-ENDIF (Boost_VERSION LESS 104800)
+-IF (Boost_VERSION LESS 105600)
++ENDIF (Boost_VERSION VERSION_LESS 1.48.00)
++IF (Boost_VERSION VERSION_LESS 1.56.00)
+     #try_lexical_cast was added in 1.56.0
+     ADD_DEFINITIONS(-DCIFTILIB_BOOST_NO_TRY_LEXICAL)
+-ENDIF (Boost_VERSION LESS 105600)
++ENDIF (Boost_VERSION VERSION_LESS 1.56.00)
+
+ #zlib, useful for volume reading
+ FIND_PACKAGE(ZLIB)