[gentoo-commits] proj/sci:master commit in: sci-biology/SPAdes/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     f7eaea4317cca5c6ca5566c05c69b604d7312bc8
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Oct 16 17:47:08 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Oct 16 17:47:08 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7eaea43

sci-biology/SPAdes: version bump, drop old and buggy version

SPAdes 3.13.0
CHANGE: Switched to multi-k-mer mode in rnaSPAdes, k-mer values are detected
        automatically based on read length.
CHANGE: Added manual as README.md in markdown format for github.
FIX: Updated BWA and switched to RopeBWT, which allows to handle large graphs.
FIX: Assert for path.length() > 0 in rnaSPAdes.
FIX: CQF and k-mer counting.
REMOVE: dipSPAdes module.
Package-Manager: Portage-2.3.51, Repoman-2.3.10

 sci-biology/SPAdes/{SPAdes-3.12.0.ebuild => SPAdes-3.13.0.ebuild} | 1 -
 1 file changed, 1 deletion(-)

diff --git a/sci-biology/SPAdes/SPAdes-3.12.0.ebuild b/sci-biology/SPAdes/SPAdes-3.13.0.ebuild
similarity index 96%
rename from sci-biology/SPAdes/SPAdes-3.12.0.ebuild
rename to sci-biology/SPAdes/SPAdes-3.13.0.ebuild
index b56180a1a..00ccc4f27 100644
--- a/sci-biology/SPAdes/SPAdes-3.12.0.ebuild
+++ b/sci-biology/SPAdes/SPAdes-3.13.0.ebuild
@@ -12,7 +12,6 @@ HOMEPAGE="http://cab.spbu.ru/software/spades"
 SRC_URI="
 	https://github.com/ablab/spades/releases/download/v${PV}/${P}.tar.gz
 	http://cab.spbu.ru/files/release${PV}/manual.html -> ${P}_manual.html
-	http://cab.spbu.ru/files/release${PV}/manual.md -> ${P}_manual.md
 	http://cab.spbu.ru/files/release${PV}/rnaspades_manual.html -> ${P}_rnaspades_manual.html
 	http://cab.spbu.ru/files/release${PV}/truspades_manual.html -> ${P}_truspades_manual.html
 	http://spades.bioinf.spbau.ru/release3.11.1/dipspades_manual.html -> ${P}_dipspades_manual.html"