* [gentoo-commits] proj/sci:master commit in: sci-biology/ngsview/
@ 2014-03-24 0:49 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2014-03-24 0:49 UTC (permalink / raw
To: gentoo-commits
commit: c5cfa53b62a55cef63b6f7da5e14d75584e64b11
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 24 00:48:03 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 24 00:48:03 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c5cfa53b
sci-biology/ngsview: new package skeleton, needs qt team help
---
sci-biology/ngsview/ChangeLog | 10 ++++++++++
sci-biology/ngsview/metadata.xml | 9 +++++++++
sci-biology/ngsview/ngsview-0.91.ebuild | 27 +++++++++++++++++++++++++++
3 files changed, 46 insertions(+)
diff --git a/sci-biology/ngsview/ChangeLog b/sci-biology/ngsview/ChangeLog
new file mode 100644
index 0000000..4e49397
--- /dev/null
+++ b/sci-biology/ngsview/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/ngsview
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ngsview-0.91 (24 Mar 2014)
+
+ 24 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +ngsview-0.91.ebuild, +metadata.xml:
+ needs qt team help
+
diff --git a/sci-biology/ngsview/metadata.xml b/sci-biology/ngsview/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/ngsview/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/ngsview/ngsview-0.91.ebuild b/sci-biology/ngsview/ngsview-0.91.ebuild
new file mode 100644
index 0000000..7185fd4
--- /dev/null
+++ b/sci-biology/ngsview/ngsview-0.91.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Display and edit next-gen sequence alignment (BED, BLAST, Eland, mapview processed MAQ, Corona formats)"
+HOMEPAGE="http://sourceforge.net/projects/ngsview"
+SRC_URI="http://sourceforge.net/projects/ngsview/files/ngsview/ngsview-0.91.tar.gz"
+
+# http://ngsview.sourceforge.net/manual.html
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="media-gfx/graphviz
+ >=sys-libs/db-4.3
+ >=dev-qt/qtcore-4"
+RDEPEND="${DEPEND}"
+
+src_compile(){
+ cd src/trapper || die "Cannot cd to src/trapper"
+ qmake || die
+ make || die
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ngsview/
@ 2014-09-16 17:50 Christoph Junghans
0 siblings, 0 replies; 6+ messages in thread
From: Christoph Junghans @ 2014-09-16 17:50 UTC (permalink / raw
To: gentoo-commits
commit: 00af42012c40207855b625cb74e40288131792ba
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 17:46:36 2014 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 17:46:36 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=00af4201
fixed DESCRIPTION
Package-Manager: portage-2.2.8-r1
---
sci-biology/ngsview/ChangeLog | 4 +++-
sci-biology/ngsview/ngsview-0.91.ebuild | 4 ++--
2 files changed, 5 insertions(+), 3 deletions(-)
diff --git a/sci-biology/ngsview/ChangeLog b/sci-biology/ngsview/ChangeLog
index 4e49397..9743fd9 100644
--- a/sci-biology/ngsview/ChangeLog
+++ b/sci-biology/ngsview/ChangeLog
@@ -2,9 +2,11 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> ngsview-0.91.ebuild:
+ fixed DESCRIPTION
+
*ngsview-0.91 (24 Mar 2014)
24 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ngsview-0.91.ebuild, +metadata.xml:
needs qt team help
-
diff --git a/sci-biology/ngsview/ngsview-0.91.ebuild b/sci-biology/ngsview/ngsview-0.91.ebuild
index 7185fd4..8e827b1 100644
--- a/sci-biology/ngsview/ngsview-0.91.ebuild
+++ b/sci-biology/ngsview/ngsview-0.91.ebuild
@@ -2,9 +2,9 @@
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=5
-DESCRIPTION="Display and edit next-gen sequence alignment (BED, BLAST, Eland, mapview processed MAQ, Corona formats)"
+DESCRIPTION="Display, edit next-gen sequence alignment (BED, BLAST, Eland, mapview processed MAQ, Corona formats)"
HOMEPAGE="http://sourceforge.net/projects/ngsview"
SRC_URI="http://sourceforge.net/projects/ngsview/files/ngsview/ngsview-0.91.tar.gz"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ngsview/
@ 2015-02-18 16:41 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-02-18 16:41 UTC (permalink / raw
To: gentoo-commits
commit: 7b7aeb05a33ccb33f3a709548f621538a051e43c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Feb 18 13:39:53 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Feb 18 13:39:53 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7b7aeb05
sci-biology/ngsview: fix SLOT operators
Package-Manager: portage-2.2.17
---
sci-biology/ngsview/ChangeLog | 5 ++++-
sci-biology/ngsview/ngsview-0.91.ebuild | 23 +++++++++++++++--------
2 files changed, 19 insertions(+), 9 deletions(-)
diff --git a/sci-biology/ngsview/ChangeLog b/sci-biology/ngsview/ChangeLog
index 9743fd9..231f7fe 100644
--- a/sci-biology/ngsview/ChangeLog
+++ b/sci-biology/ngsview/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-biology/ngsview
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 18 Feb 2015; Justin Lecher <jlec@gentoo.org> ngsview-0.91.ebuild:
+ sci-biology/ngsview: fix SLOT operators
+
16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> ngsview-0.91.ebuild:
fixed DESCRIPTION
diff --git a/sci-biology/ngsview/ngsview-0.91.ebuild b/sci-biology/ngsview/ngsview-0.91.ebuild
index 8e827b1..db0fde6 100644
--- a/sci-biology/ngsview/ngsview-0.91.ebuild
+++ b/sci-biology/ngsview/ngsview-0.91.ebuild
@@ -1,12 +1,14 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
+inherit qt4-r2
+
DESCRIPTION="Display, edit next-gen sequence alignment (BED, BLAST, Eland, mapview processed MAQ, Corona formats)"
HOMEPAGE="http://sourceforge.net/projects/ngsview"
-SRC_URI="http://sourceforge.net/projects/ngsview/files/ngsview/ngsview-0.91.tar.gz"
+SRC_URI="mirror://sourceforge/projects/${PN}/files/${PN}/${P}.tar.gz"
# http://ngsview.sourceforge.net/manual.html
@@ -15,13 +17,18 @@ SLOT="0"
KEYWORDS=""
IUSE=""
-DEPEND="media-gfx/graphviz
- >=sys-libs/db-4.3
- >=dev-qt/qtcore-4"
+DEPEND="
+ media-gfx/graphviz
+ sys-libs/db:*
+ dev-qt/qtcore:4"
RDEPEND="${DEPEND}"
-src_compile(){
+src_configure(){
+ cd src/trapper || die "Cannot cd to src/trapper"
+ eqmake4
+}
+
+src_compile() {
cd src/trapper || die "Cannot cd to src/trapper"
- qmake || die
- make || die
+ default
}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ngsview/
@ 2015-06-08 12:19 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-06-08 12:19 UTC (permalink / raw
To: gentoo-commits
commit: 4247b77f10baec306a040d7b354538a35ba4b320
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 8 12:18:56 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 8 12:18:56 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4247b77f
sci-biology/ngsview: Updating remote-id in metadata.xml
Package-Manager: portage-2.2.20
sci-biology/ngsview/ChangeLog | 3 +++
sci-biology/ngsview/metadata.xml | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-biology/ngsview/ChangeLog b/sci-biology/ngsview/ChangeLog
index 2049a4a..bdd09d0 100644
--- a/sci-biology/ngsview/ChangeLog
+++ b/sci-biology/ngsview/ChangeLog
@@ -5,6 +5,9 @@
08 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
sci-biology/ngsview: Updating remote-id in metadata.xml
+ 08 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
+ sci-biology/ngsview: Updating remote-id in metadata.xml
+
18 Feb 2015; Justin Lecher <jlec@gentoo.org> ngsview-0.91.ebuild:
sci-biology/ngsview: fix SLOT operators
diff --git a/sci-biology/ngsview/metadata.xml b/sci-biology/ngsview/metadata.xml
index 8346b2b..11f9c4b 100644
--- a/sci-biology/ngsview/metadata.xml
+++ b/sci-biology/ngsview/metadata.xml
@@ -7,6 +7,6 @@
<name>Martin Mokrejs</name>
</maintainer>
<upstream>
- <remote-id type="sourceforge">projects</remote-id>
+ <remote-id type="sourceforge">ngsview</remote-id>
</upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ngsview/
@ 2018-09-10 17:19 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2018-09-10 17:19 UTC (permalink / raw
To: gentoo-commits
commit: ad7c28a1718277b72a1bd3081be50b44669c01b0
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Sep 10 17:19:15 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Sep 10 17:19:15 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad7c28a1
sci-biology/ngsview: document last ebuild
Package-Manager: Portage-2.3.48, Repoman-2.3.10
sci-biology/ngsview/ngsview-0.91.ebuild | 15 ++++++++-------
1 file changed, 8 insertions(+), 7 deletions(-)
diff --git a/sci-biology/ngsview/ngsview-0.91.ebuild b/sci-biology/ngsview/ngsview-0.91.ebuild
index c81dd09fe..c12ecfecd 100644
--- a/sci-biology/ngsview/ngsview-0.91.ebuild
+++ b/sci-biology/ngsview/ngsview-0.91.ebuild
@@ -1,14 +1,15 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
-inherit qt4-r2
-
DESCRIPTION="Display, edit NGS alignments"
HOMEPAGE="http://sourceforge.net/projects/ngsview"
-SRC_URI="mirror://sourceforge/projects/${PN}/files/${PN}/${P}.tar.gz"
+#SRC_URI="mirror://sourceforge/projects/${PN}/files/${PN}/${P}.tar.gz"
+SRC_URI="https://sourceforge.net/projects/ngsview/files/ngsview/ngsview-0.91.tar.gz"
+# http://ngsview.sourceforge.net/about.html
+# a qt3 package needs >=sys-libs/db-4.3:*[cxx]
# http://ngsview.sourceforge.net/manual.html
LICENSE="BSD"
@@ -18,13 +19,13 @@ IUSE=""
DEPEND="
media-gfx/graphviz
- sys-libs/db:*
- dev-qt/qtcore:4"
+ >=sys-libs/db-4.3:*[cxx]
+ dev-qt/qtcore:5"
RDEPEND="${DEPEND}"
src_configure(){
cd src/trapper || die "Cannot cd to src/trapper"
- eqmake4
+ /usr/lib/qt5/bin/qmake || die
}
src_compile() {
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ngsview/
@ 2018-09-10 17:24 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2018-09-10 17:24 UTC (permalink / raw
To: gentoo-commits
commit: b521d9270e23a0666d0805885a969f6a8a1ab9bc
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Sep 10 17:20:19 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Sep 10 17:20:19 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b521d927
sci-biology/ngsview: drop an outdated package requiring qt3
The was masked out and was written for qt3. It is unclear if it
would compile using newer qmake. Also, sys-libs/db-4.3:*[cxx]
dependency would have to be improved and inlcude and libdir paths
would need to be inserted into the Makefiles.
Removing.
Bug: https://bugs.gentoo.org/663110
sci-biology/ngsview/metadata.xml | 15 ---------------
sci-biology/ngsview/ngsview-0.91.ebuild | 34 ---------------------------------
2 files changed, 49 deletions(-)
diff --git a/sci-biology/ngsview/metadata.xml b/sci-biology/ngsview/metadata.xml
deleted file mode 100644
index 2e918aae9..000000000
--- a/sci-biology/ngsview/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">projects</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/ngsview/ngsview-0.91.ebuild b/sci-biology/ngsview/ngsview-0.91.ebuild
deleted file mode 100644
index c12ecfecd..000000000
--- a/sci-biology/ngsview/ngsview-0.91.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Display, edit NGS alignments"
-HOMEPAGE="http://sourceforge.net/projects/ngsview"
-#SRC_URI="mirror://sourceforge/projects/${PN}/files/${PN}/${P}.tar.gz"
-SRC_URI="https://sourceforge.net/projects/ngsview/files/ngsview/ngsview-0.91.tar.gz"
-
-# http://ngsview.sourceforge.net/about.html
-# a qt3 package needs >=sys-libs/db-4.3:*[cxx]
-# http://ngsview.sourceforge.net/manual.html
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
- media-gfx/graphviz
- >=sys-libs/db-4.3:*[cxx]
- dev-qt/qtcore:5"
-RDEPEND="${DEPEND}"
-
-src_configure(){
- cd src/trapper || die "Cannot cd to src/trapper"
- /usr/lib/qt5/bin/qmake || die
-}
-
-src_compile() {
- cd src/trapper || die "Cannot cd to src/trapper"
- default
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
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