* [gentoo-commits] proj/sci:master commit in: sci-biology/poretools/
@ 2017-05-12 22:18 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2017-05-12 22:18 UTC (permalink / raw
To: gentoo-commits
commit: 1e2eca70fc0fffc3a16875a71f27fddeb2252fba
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri May 12 22:18:05 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri May 12 22:18:05 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1e2eca70
sci-biology/poretools: new package
Package-Manager: Portage-2.3.5, Repoman-2.3.2
sci-biology/poretools/metadata.xml | 12 ++++++++++++
sci-biology/poretools/poretools-0.6.0.ebuild | 26 ++++++++++++++++++++++++++
2 files changed, 38 insertions(+)
diff --git a/sci-biology/poretools/metadata.xml b/sci-biology/poretools/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/poretools/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/poretools/poretools-0.6.0.ebuild b/sci-biology/poretools/poretools-0.6.0.ebuild
new file mode 100644
index 000000000..449d486db
--- /dev/null
+++ b/sci-biology/poretools/poretools-0.6.0.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Tools for sequencing FAST5 data from Oxford Nanopore"
+HOMEPAGE="https://poretools.readthedocs.io
+ https://github.com/arq5x/poretools"
+SRC_URI="https://github.com/arq5x/poretools/archive/v0.6.0.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-2" # https://github.com/arq5x/poretools/issues/136
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ >=sci-libs/hdf5-1.8.7
+ >=dev-python/h5py-2.2[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/seaborn[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]"
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/poretools/
@ 2018-06-28 13:54 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2018-06-28 13:54 UTC (permalink / raw
To: gentoo-commits
commit: c5518a330eed03dff467108d89666cc1996d7da5
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jun 28 13:54:24 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jun 28 13:54:24 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c5518a33
sci-biology/poretools: change LICENSE, add missing DEPENDency
Package-Manager: Portage-2.3.40, Repoman-2.3.9
sci-biology/poretools/poretools-0.6.0.ebuild | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/sci-biology/poretools/poretools-0.6.0.ebuild b/sci-biology/poretools/poretools-0.6.0.ebuild
index 449d486db..158c10a9d 100644
--- a/sci-biology/poretools/poretools-0.6.0.ebuild
+++ b/sci-biology/poretools/poretools-0.6.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -12,7 +12,7 @@ HOMEPAGE="https://poretools.readthedocs.io
https://github.com/arq5x/poretools"
SRC_URI="https://github.com/arq5x/poretools/archive/v0.6.0.tar.gz -> ${P}.tar.gz"
-LICENSE="GPL-2" # https://github.com/arq5x/poretools/issues/136
+LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
@@ -23,4 +23,5 @@ RDEPEND="${DEPEND}
>=dev-python/h5py-2.2[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/seaborn[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]"
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]"
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/poretools/
@ 2020-09-27 8:09 Horea Christian
0 siblings, 0 replies; 3+ messages in thread
From: Horea Christian @ 2020-09-27 8:09 UTC (permalink / raw
To: gentoo-commits
commit: 8bd6809f827842baeb663fae27e9627c9788c92b
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 08:06:44 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 08:06:44 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8bd6809f
sci-biology/poretools: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/poretools/metadata.xml | 12 ------------
sci-biology/poretools/poretools-0.6.0.ebuild | 27 ---------------------------
2 files changed, 39 deletions(-)
diff --git a/sci-biology/poretools/metadata.xml b/sci-biology/poretools/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/poretools/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-biology/poretools/poretools-0.6.0.ebuild b/sci-biology/poretools/poretools-0.6.0.ebuild
deleted file mode 100644
index 158c10a9d..000000000
--- a/sci-biology/poretools/poretools-0.6.0.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Tools for sequencing FAST5 data from Oxford Nanopore"
-HOMEPAGE="https://poretools.readthedocs.io
- https://github.com/arq5x/poretools"
-SRC_URI="https://github.com/arq5x/poretools/archive/v0.6.0.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
- >=sci-libs/hdf5-1.8.7
- >=dev-python/h5py-2.2[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/seaborn[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]"
^ permalink raw reply related [flat|nested] 3+ messages in thread
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