From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 19BE9138334 for ; Mon, 25 Jun 2018 22:20:17 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 9398CE094E; Mon, 25 Jun 2018 22:20:15 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 59FFEE094E for ; Mon, 25 Jun 2018 22:20:14 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id BB5DE335CB6 for ; Mon, 25 Jun 2018 22:20:01 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 6CBBE31B for ; Mon, 25 Jun 2018 22:19:59 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1529965190.b28a9f9525962c8e86f6773132e15222e7f0980c.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/stringtie/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/stringtie/stringtie-1.2.2.ebuild X-VCS-Directories: sci-biology/stringtie/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: b28a9f9525962c8e86f6773132e15222e7f0980c X-VCS-Branch: master Date: Mon, 25 Jun 2018 22:19:59 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 3420ce27-370e-4770-a8f2-4b19f326e068 X-Archives-Hash: aefd5a6b0bbb70fe37495d2ffce3d823 commit: b28a9f9525962c8e86f6773132e15222e7f0980c Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Mon Jun 25 22:19:50 2018 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Jun 25 22:19:50 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b28a9f95 sci-biology/stringtie: document bundled sci-biology/gclib copy Package-Manager: Portage-2.3.40, Repoman-2.3.9 sci-biology/stringtie/stringtie-1.2.2.ebuild | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/sci-biology/stringtie/stringtie-1.2.2.ebuild b/sci-biology/stringtie/stringtie-1.2.2.ebuild index 1f38bf7cd..37c0f26cf 100644 --- a/sci-biology/stringtie/stringtie-1.2.2.ebuild +++ b/sci-biology/stringtie/stringtie-1.2.2.ebuild @@ -13,8 +13,10 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" -# contains bundled gclib -DEPEND="sci-biology/samtools:0.1-legacy" # bundled samtools-0.1.18 +# contains bundled gclib (0.9.8?), well they are just headers +DEPEND=" + sci-biology/gclib + sci-biology/samtools:0.1-legacy" # bundled samtools-0.1.18 RDEPEND="${DEPEND}" PATCHES=( "${FILESDIR}"/Makefile.patch ) @@ -22,6 +24,7 @@ PATCHES=( "${FILESDIR}"/Makefile.patch ) src_prepare(){ default rm -r samtools-0.1.18 || die + # TODO: `rm -rf ./gclib' and fix Makefile } src_compile(){