* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/
@ 2018-06-08 13:01 Alexey Shvetsov
0 siblings, 0 replies; 7+ messages in thread
From: Alexey Shvetsov @ 2018-06-08 13:01 UTC (permalink / raw
To: gentoo-commits
commit: 5ab7460b5a2261accb020f387220e20e0b5ce49d
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 8 13:01:42 2018 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Fri Jun 8 13:01:42 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5ab7460b
sci-chemistry/modeller: Import from science overlay
Package-Manager: Portage-2.3.40, Repoman-2.3.9
sci-chemistry/modeller/Manifest | 1 +
sci-chemistry/modeller/metadata.xml | 8 ++
sci-chemistry/modeller/modeller-9.20.ebuild | 145 ++++++++++++++++++++++++++++
3 files changed, 154 insertions(+)
diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest
new file mode 100644
index 00000000000..0674ee130c5
--- /dev/null
+++ b/sci-chemistry/modeller/Manifest
@@ -0,0 +1 @@
+DIST modeller-9.20.tar.gz 34909796 BLAKE2B d89c81823c4d7784a7b3d64fdb01158a973edc7d8b316c773e038ba8645797c543d5bc58c1bff5462ae5975a6c2796f4b2d500641d226c3b2281cf794cfeba8d SHA512 667edeeda0a9038258f6932b3cef22a1e9d0fe47f47bd2ac612e7bac7f23a863f5a65cfd93abfa405310e7fb7b305d53e71d6c6e930613b0dbd43b24dcd5919a
diff --git a/sci-chemistry/modeller/metadata.xml b/sci-chemistry/modeller/metadata.xml
new file mode 100644
index 00000000000..da36ecbfcd6
--- /dev/null
+++ b/sci-chemistry/modeller/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="project">
+ <email>sci-chemistry@gentoo.org</email>
+ <name>Gentoo Chemistry Project</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/modeller/modeller-9.20.ebuild b/sci-chemistry/modeller/modeller-9.20.ebuild
new file mode 100644
index 00000000000..0d29c3843f2
--- /dev/null
+++ b/sci-chemistry/modeller/modeller-9.20.ebuild
@@ -0,0 +1,145 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1 eutils multilib versionator
+
+DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
+HOMEPAGE="http://salilab.org/modeller/"
+SRC_URI="http://salilab.org/${PN}/${PV}/${P}.tar.gz"
+
+LICENSE="modeller"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples"
+SLOT="0"
+
+RESTRICT="mirror"
+
+DEPEND=">=dev-lang/swig-1.3"
+RDEPEND=""
+
+INPATH="${EPREFIX}"/opt/modeller${ver}
+
+QA_PREBUILT="/opt/*"
+
+pkg_setup() {
+ case ${ARCH} in
+ x86)
+ EXECTYPE="i386-intel8";;
+ amd64)
+ EXECTYPE="x86_64-intel8";;
+ *)
+ die "Your arch "${ARCH}" does not appear supported at this time.";;
+ esac
+}
+
+python_prepare_all(){
+ sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
+ distutils-r1_python_prepare_all
+}
+
+python_compile(){
+ cd src/swig || die
+ swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
+ distutils-r1_python_compile
+}
+
+python_install() {
+ cd src/swig || die
+ distutils-r1_python_install
+}
+
+python_install_all(){
+ cd "${S}" || die
+ sed \
+ -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
+ -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
+ -i bin/modscript || die
+
+ sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
+ -e "s;@EXETYPE\@;${EXECTYPE};" \
+ bin/modpy.sh.in > "${T}/modpy.sh"
+
+ insinto ${INPATH}
+ doins -r modlib
+ python_foreach_impl python_domodule modlib/modeller
+
+ insinto ${INPATH}/bin
+ doins -r bin/{lib,*top}
+
+ exeinto ${INPATH}/bin
+ doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
+
+ python_foreach_impl python_doscript bin/modslave.py
+ dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
+ dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
+
+ exeinto ${INPATH}/lib/${EXECTYPE}/
+ doexe lib/${EXECTYPE}/lib*
+ dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
+ dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8
+
+ use doc && HTML_DOCS=( doc/. )
+ distutils-r1_python_install_all
+
+ if use examples; then
+ insinto /usr/share/${PN}/
+ doins -r examples
+ fi
+
+ insinto /etc/revdep-rebuild
+ cat >> "${T}"/40-${PN} <<- EOF
+ SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
+ EOF
+ doins "${T}"/40-${PN}
+}
+
+pkg_postinst() {
+ if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
+ echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
+ fi
+
+ if grep -q license ${INPATH}/modlib/modeller/config.py; then
+ einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
+ else
+ ewarn "Obtain a license Key from"
+ ewarn "http://salilab.org/modeller/registration.html"
+ ewarn "And run this before using modeller:"
+ ewarn "emerge --config =${CATEGORY}/${PF}"
+ ewarn "That way you can [re]enter your license key."
+ fi
+}
+
+pkg_postrm() {
+ ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
+ ewarn "that you need to remove to completely get rid of modeller."
+}
+
+pkg_config() {
+ ewarn "Your license key is NOT checked for validity here."
+ ewarn " Make sure you type it in correctly."
+ eerror "If you CTRL+C out of this, modeller will not run!"
+ while true
+ do
+ einfo "Please enter your license key:"
+ read license_key1
+ einfo "Please re-enter your license key:"
+ read license_key2
+ if [[ "$license_key1" == "" ]]
+ then
+ echo "You entered a blank license key. Try again."
+ else
+ if [[ "$license_key1" == "$license_key2" ]]
+ then
+ echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
+ einfo "Thank you!"
+ break
+ else
+ eerror "Your license key entries do not match. Try again."
+ fi
+ fi
+ done
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/
@ 2018-06-11 16:28 Aaron Bauman
0 siblings, 0 replies; 7+ messages in thread
From: Aaron Bauman @ 2018-06-11 16:28 UTC (permalink / raw
To: gentoo-commits
commit: 03acc592f645d64982e31912a2416f478885fde0
Author: Michael Mair-Keimberger <m.mairkeimberger <AT> gmail <DOT> com>
AuthorDate: Sat Jun 9 19:34:38 2018 +0000
Commit: Aaron Bauman <bman <AT> gentoo <DOT> org>
CommitDate: Mon Jun 11 16:27:29 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=03acc592
sci-chemistry/modeller: use HTTPs
sci-chemistry/modeller/modeller-9.20.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/modeller/modeller-9.20.ebuild b/sci-chemistry/modeller/modeller-9.20.ebuild
index 0d29c3843f2..e7e80937b7f 100644
--- a/sci-chemistry/modeller/modeller-9.20.ebuild
+++ b/sci-chemistry/modeller/modeller-9.20.ebuild
@@ -8,8 +8,8 @@ PYTHON_COMPAT=( python2_7 )
inherit distutils-r1 eutils multilib versionator
DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
-HOMEPAGE="http://salilab.org/modeller/"
-SRC_URI="http://salilab.org/${PN}/${PV}/${P}.tar.gz"
+HOMEPAGE="https://salilab.org/modeller/"
+SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
LICENSE="modeller"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
^ permalink raw reply related [flat|nested] 7+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/
@ 2019-07-12 11:46 Alexey Shvetsov
0 siblings, 0 replies; 7+ messages in thread
From: Alexey Shvetsov @ 2019-07-12 11:46 UTC (permalink / raw
To: gentoo-commits
commit: a5e403b16e99731e3ca1db68e236abaf822b4ce1
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 12 11:45:44 2019 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Fri Jul 12 11:45:44 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a5e403b1
sci-chemistry/modeller: Version bump
Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>
sci-chemistry/modeller/Manifest | 1 +
sci-chemistry/modeller/modeller-9.22.ebuild | 145 ++++++++++++++++++++++++++++
2 files changed, 146 insertions(+)
diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest
index 0674ee130c5..69e1780c97f 100644
--- a/sci-chemistry/modeller/Manifest
+++ b/sci-chemistry/modeller/Manifest
@@ -1 +1,2 @@
DIST modeller-9.20.tar.gz 34909796 BLAKE2B d89c81823c4d7784a7b3d64fdb01158a973edc7d8b316c773e038ba8645797c543d5bc58c1bff5462ae5975a6c2796f4b2d500641d226c3b2281cf794cfeba8d SHA512 667edeeda0a9038258f6932b3cef22a1e9d0fe47f47bd2ac612e7bac7f23a863f5a65cfd93abfa405310e7fb7b305d53e71d6c6e930613b0dbd43b24dcd5919a
+DIST modeller-9.22.tar.gz 34953371 BLAKE2B 3bf8828b38f22955dea973cfe54cbd2f77bf021900bd5aa3c75f083b12e2a7199c3173de526acfeab005c0606816bac347b9bdfb6b62d5e3db9c9e18fed99ac4 SHA512 0056f09a07d6e2b565c8f4accca48ad176c9d32634b75bc4db60a187d56f22ef1710296dfd31bf27f496c5ed100146420be7cfdb135ca8b2b0fac7d7f5fa877f
diff --git a/sci-chemistry/modeller/modeller-9.22.ebuild b/sci-chemistry/modeller/modeller-9.22.ebuild
new file mode 100644
index 00000000000..57f11e16861
--- /dev/null
+++ b/sci-chemistry/modeller/modeller-9.22.ebuild
@@ -0,0 +1,145 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1 eutils multilib
+
+DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
+HOMEPAGE="https://salilab.org/modeller/"
+SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
+
+LICENSE="modeller"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples"
+SLOT="0"
+
+RESTRICT="mirror"
+
+DEPEND=">=dev-lang/swig-1.3"
+RDEPEND=""
+
+INPATH="${EPREFIX}"/opt/modeller${ver}
+
+QA_PREBUILT="/opt/*"
+
+pkg_setup() {
+ case ${ARCH} in
+ x86)
+ EXECTYPE="i386-intel8";;
+ amd64)
+ EXECTYPE="x86_64-intel8";;
+ *)
+ die "Your arch "${ARCH}" does not appear supported at this time.";;
+ esac
+}
+
+python_prepare_all(){
+ sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
+ distutils-r1_python_prepare_all
+}
+
+python_compile(){
+ cd src/swig || die
+ swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
+ distutils-r1_python_compile
+}
+
+python_install() {
+ cd src/swig || die
+ distutils-r1_python_install
+}
+
+python_install_all(){
+ cd "${S}" || die
+ sed \
+ -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
+ -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
+ -i bin/modscript || die
+
+ sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
+ -e "s;@EXETYPE\@;${EXECTYPE};" \
+ bin/modpy.sh.in > "${T}/modpy.sh"
+
+ insinto ${INPATH}
+ doins -r modlib
+ python_foreach_impl python_domodule modlib/modeller
+
+ insinto ${INPATH}/bin
+ doins -r bin/{lib,*top}
+
+ exeinto ${INPATH}/bin
+ doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
+
+ python_foreach_impl python_doscript bin/modslave.py
+ dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
+ dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
+
+ exeinto ${INPATH}/lib/${EXECTYPE}/
+ doexe lib/${EXECTYPE}/lib*
+ dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
+ dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8
+
+ use doc && HTML_DOCS=( doc/. )
+ distutils-r1_python_install_all
+
+ if use examples; then
+ insinto /usr/share/${PN}/
+ doins -r examples
+ fi
+
+ insinto /etc/revdep-rebuild
+ cat >> "${T}"/40-${PN} <<- EOF
+ SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
+ EOF
+ doins "${T}"/40-${PN}
+}
+
+pkg_postinst() {
+ if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
+ echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
+ fi
+
+ if grep -q license ${INPATH}/modlib/modeller/config.py; then
+ einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
+ else
+ ewarn "Obtain a license Key from"
+ ewarn "http://salilab.org/modeller/registration.html"
+ ewarn "And run this before using modeller:"
+ ewarn "emerge --config =${CATEGORY}/${PF}"
+ ewarn "That way you can [re]enter your license key."
+ fi
+}
+
+pkg_postrm() {
+ ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
+ ewarn "that you need to remove to completely get rid of modeller."
+}
+
+pkg_config() {
+ ewarn "Your license key is NOT checked for validity here."
+ ewarn " Make sure you type it in correctly."
+ eerror "If you CTRL+C out of this, modeller will not run!"
+ while true
+ do
+ einfo "Please enter your license key:"
+ read license_key1
+ einfo "Please re-enter your license key:"
+ read license_key2
+ if [[ "$license_key1" == "" ]]
+ then
+ echo "You entered a blank license key. Try again."
+ else
+ if [[ "$license_key1" == "$license_key2" ]]
+ then
+ echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
+ einfo "Thank you!"
+ break
+ else
+ eerror "Your license key entries do not match. Try again."
+ fi
+ fi
+ done
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/
@ 2020-12-02 12:09 Alexey Shvetsov
0 siblings, 0 replies; 7+ messages in thread
From: Alexey Shvetsov @ 2020-12-02 12:09 UTC (permalink / raw
To: gentoo-commits
commit: fb3f7ff1498a2a525dfeb40acaa219d31fe56471
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Wed Dec 2 12:08:41 2020 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Wed Dec 2 12:08:54 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fb3f7ff1
sci-chemistry/modeller: resurection
Package-Manager: Portage-3.0.11, Repoman-3.0.2
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>
sci-chemistry/modeller/Manifest | 1 +
sci-chemistry/modeller/metadata.xml | 12 +++
sci-chemistry/modeller/modeller-9.25.ebuild | 149 ++++++++++++++++++++++++++++
3 files changed, 162 insertions(+)
diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest
new file mode 100644
index 00000000000..e3d097b4b75
--- /dev/null
+++ b/sci-chemistry/modeller/Manifest
@@ -0,0 +1 @@
+DIST modeller-9.25.tar.gz 44820658 BLAKE2B b3e8a3cc8cc70689a25bc5ed2eee294d67bef8eea9ed4b64d41aba3a27c0bc428ae58e74d734da0eaab7e4fabb213d098b9ba66b9569557159ac7d4a58244b0a SHA512 93f273aba0ec0f884cde5bbcc24769a09386bfc6bf1744d80001e41924b1a682225ba3c554fb9898ef3bfd1fd8451f9458bb92431b20f2f51b01781e79686c91
diff --git a/sci-chemistry/modeller/metadata.xml b/sci-chemistry/modeller/metadata.xml
new file mode 100644
index 00000000000..7daa2ce7e5f
--- /dev/null
+++ b/sci-chemistry/modeller/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>alexxy@gentoo.org</email>
+ <name>Alexey Shvetsov</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-chemistry@gentoo.org</email>
+ <name>Gentoo Chemistry Project</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/modeller/modeller-9.25.ebuild b/sci-chemistry/modeller/modeller-9.25.ebuild
new file mode 100644
index 00000000000..2e2cae47f51
--- /dev/null
+++ b/sci-chemistry/modeller/modeller-9.25.ebuild
@@ -0,0 +1,149 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8,9} )
+DISTUTILS_USE_SETUPTOOLS=no
+
+inherit distutils-r1 eutils multilib
+
+DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
+HOMEPAGE="https://salilab.org/modeller/"
+SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
+
+LICENSE="modeller"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples"
+SLOT="0"
+
+RESTRICT="mirror"
+
+DEPEND=">=dev-lang/swig-1.3"
+RDEPEND=""
+
+INPATH="${EPREFIX}"/opt/modeller${ver}
+
+QA_PREBUILT="/opt/*"
+
+pkg_setup() {
+ case ${ARCH} in
+ x86)
+ EXECTYPE="i386-intel8";;
+ amd64)
+ EXECTYPE="x86_64-intel8";;
+ *)
+ die "Your arch "${ARCH}" does not appear supported at this time.";;
+ esac
+}
+
+python_prepare_all(){
+ sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
+ rm -rf modlib/modeller/python_library || die
+ sed -i '1 i\#!/usr/bin/python' bin/modslave.py || die
+ 2to3 -w -n modlib/modeller || die
+ distutils-r1_python_prepare_all
+}
+
+python_compile(){
+ cd src/swig || die
+ swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
+ distutils-r1_python_compile
+}
+
+python_install() {
+ cd src/swig || die
+ distutils-r1_python_install
+}
+
+python_install_all(){
+ cd "${S}" || die
+ sed \
+ -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
+ -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
+ -i bin/modscript || die
+
+ sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
+ -e "s;@EXETYPE\@;${EXECTYPE};" \
+ bin/modpy.sh.in > "${T}/modpy.sh"
+
+ insinto ${INPATH}
+ doins -r modlib
+ python_foreach_impl python_domodule modlib/modeller
+
+ insinto ${INPATH}/bin
+ doins -r bin/{lib,*top}
+
+ exeinto ${INPATH}/bin
+ doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
+
+ python_foreach_impl python_doscript bin/modslave.py
+ dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
+ dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
+
+ exeinto ${INPATH}/lib/${EXECTYPE}/
+ doexe lib/${EXECTYPE}/lib*
+ dosym libmodeller.so.12 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
+ dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.12 /usr/$(get_libdir)/libmodeller.so.12
+
+ use doc && HTML_DOCS=( doc/. )
+ distutils-r1_python_install_all
+
+ if use examples; then
+ insinto /usr/share/${PN}/
+ doins -r examples
+ fi
+
+ insinto /etc/revdep-rebuild
+ cat >> "${T}"/40-${PN} <<- EOF
+ SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
+ EOF
+ doins "${T}"/40-${PN}
+}
+
+pkg_postinst() {
+ if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
+ echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
+ fi
+
+ if grep -q license ${INPATH}/modlib/modeller/config.py; then
+ einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
+ else
+ ewarn "Obtain a license Key from"
+ ewarn "http://salilab.org/modeller/registration.html"
+ ewarn "And run this before using modeller:"
+ ewarn "emerge --config =${CATEGORY}/${PF}"
+ ewarn "That way you can [re]enter your license key."
+ fi
+}
+
+pkg_postrm() {
+ ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
+ ewarn "that you need to remove to completely get rid of modeller."
+}
+
+pkg_config() {
+ ewarn "Your license key is NOT checked for validity here."
+ ewarn " Make sure you type it in correctly."
+ eerror "If you CTRL+C out of this, modeller will not run!"
+ while true
+ do
+ einfo "Please enter your license key:"
+ read license_key1
+ einfo "Please re-enter your license key:"
+ read license_key2
+ if [[ "$license_key1" == "" ]]
+ then
+ echo "You entered a blank license key. Try again."
+ else
+ if [[ "$license_key1" == "$license_key2" ]]
+ then
+ echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
+ einfo "Thank you!"
+ break
+ else
+ eerror "Your license key entries do not match. Try again."
+ fi
+ fi
+ done
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/
@ 2020-12-02 12:12 Alexey Shvetsov
0 siblings, 0 replies; 7+ messages in thread
From: Alexey Shvetsov @ 2020-12-02 12:12 UTC (permalink / raw
To: gentoo-commits
commit: d51a5230c68af650090278d69863c711af93172b
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Wed Dec 2 12:12:00 2020 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Wed Dec 2 12:12:00 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d51a5230
sci-chemistry/modeller: fix var
Package-Manager: Portage-3.0.11, Repoman-3.0.2
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>
sci-chemistry/modeller/modeller-9.25.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/modeller/modeller-9.25.ebuild b/sci-chemistry/modeller/modeller-9.25.ebuild
index 2e2cae47f51..c07e6348056 100644
--- a/sci-chemistry/modeller/modeller-9.25.ebuild
+++ b/sci-chemistry/modeller/modeller-9.25.ebuild
@@ -107,7 +107,7 @@ pkg_postinst() {
fi
if grep -q license ${INPATH}/modlib/modeller/config.py; then
- einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
+ einfo "A license key file is already present in ${INPATH}/modlib/modeller/config.py"
else
ewarn "Obtain a license Key from"
ewarn "http://salilab.org/modeller/registration.html"
^ permalink raw reply related [flat|nested] 7+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/
@ 2021-05-04 19:23 Sam James
0 siblings, 0 replies; 7+ messages in thread
From: Sam James @ 2021-05-04 19:23 UTC (permalink / raw
To: gentoo-commits
commit: 1a6b6a57aa0e0f220cfb2fee39fca7f130486251
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 27 20:03:05 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue May 4 19:22:41 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1a6b6a57
sci-chemistry/modeller: fix function/phase declaration style
Package-Manager: Portage-3.0.18-prefix, Repoman-3.0.3
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-chemistry/modeller/modeller-9.25.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-chemistry/modeller/modeller-9.25.ebuild b/sci-chemistry/modeller/modeller-9.25.ebuild
index 7dd6a100154..3e44bd99585 100644
--- a/sci-chemistry/modeller/modeller-9.25.ebuild
+++ b/sci-chemistry/modeller/modeller-9.25.ebuild
@@ -37,7 +37,7 @@ pkg_setup() {
esac
}
-python_prepare_all(){
+python_prepare_all() {
sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
rm -rf modlib/modeller/python_library || die
sed -i '1 i\#!/usr/bin/python' bin/modslave.py || die
@@ -45,7 +45,7 @@ python_prepare_all(){
distutils-r1_python_prepare_all
}
-python_compile(){
+python_compile() {
cd src/swig || die
swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
distutils-r1_python_compile
@@ -56,7 +56,7 @@ python_install() {
distutils-r1_python_install
}
-python_install_all(){
+python_install_all() {
cd "${S}" || die
sed \
-e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
^ permalink raw reply related [flat|nested] 7+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/
@ 2022-04-08 9:54 Alexey Shvetsov
0 siblings, 0 replies; 7+ messages in thread
From: Alexey Shvetsov @ 2022-04-08 9:54 UTC (permalink / raw
To: gentoo-commits
commit: fe0ba8b3124e39411eb205606951ee3199e66459
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Fri Apr 8 09:53:40 2022 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Fri Apr 8 09:53:40 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fe0ba8b3
sci-chemistry/modeller: enable py3.10
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>
sci-chemistry/modeller/modeller-9.25.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-chemistry/modeller/modeller-9.25.ebuild b/sci-chemistry/modeller/modeller-9.25.ebuild
index 3e44bd99585c..f791a3104661 100644
--- a/sci-chemistry/modeller/modeller-9.25.ebuild
+++ b/sci-chemistry/modeller/modeller-9.25.ebuild
@@ -1,12 +1,12 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{7..10} )
DISTUTILS_USE_SETUPTOOLS=no
-inherit distutils-r1 multilib
+inherit distutils-r1
DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
HOMEPAGE="https://salilab.org/modeller/"
^ permalink raw reply related [flat|nested] 7+ messages in thread
end of thread, other threads:[~2022-04-08 9:54 UTC | newest]
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2019-07-12 11:46 Alexey Shvetsov
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