From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 0B9D11382C5 for ; Mon, 23 Apr 2018 19:13:47 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 0FD17E0B94; Mon, 23 Apr 2018 19:13:46 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id C47EBE0B94 for ; Mon, 23 Apr 2018 19:13:45 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A30F5335C07 for ; Mon, 23 Apr 2018 19:13:43 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 5D0D127C for ; Mon, 23 Apr 2018 19:13:41 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1524510801.026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild sci-biology/jellyfish/jellyfish-2.2.9.ebuild X-VCS-Directories: sci-biology/jellyfish/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7 X-VCS-Branch: master Date: Mon, 23 Apr 2018 19:13:41 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 00b89f2a-c08b-4921-8461-19fa1dbc749b X-Archives-Hash: 2eb1465d2dd28020166eb6eb040f50f8 commit: 026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Mon Apr 23 19:13:21 2018 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Apr 23 19:13:21 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=026f3272 sci-biology/jellyfish: install bundled PDF manual And do not download an old version at all. Package-Manager: Portage-2.3.31, Repoman-2.3.9 sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild | 5 ++--- .../jellyfish/{jellyfish-2.2.6-r1.ebuild => jellyfish-2.2.9.ebuild} | 5 ++--- 2 files changed, 4 insertions(+), 6 deletions(-) diff --git a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild b/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild index 54cc724eb..692c9e9ee 100644 --- a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild +++ b/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild @@ -7,8 +7,7 @@ inherit eutils flag-o-matic autotools DESCRIPTION="k-mer counter within reads for assemblies" HOMEPAGE="http://www.genome.umd.edu/jellyfish.html" -SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz - ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf" +SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz" # older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 @@ -48,5 +47,5 @@ src_install(){ mv "${ED}"/usr/include/"${P}"/"${PN}"/* "${ED}/usr/include/${PN}${SLOT}/" || die rm -r "${ED}/usr/include/${P}" || die mv "${ED}"/usr/share/man/man1/jellyfish.1 "${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die - dodoc "${DISTDIR}"/JellyfishUserGuide.pdf + dodoc doc/jellyfish.pdf } diff --git a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild b/sci-biology/jellyfish/jellyfish-2.2.9.ebuild similarity index 92% copy from sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild copy to sci-biology/jellyfish/jellyfish-2.2.9.ebuild index 54cc724eb..692c9e9ee 100644 --- a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild +++ b/sci-biology/jellyfish/jellyfish-2.2.9.ebuild @@ -7,8 +7,7 @@ inherit eutils flag-o-matic autotools DESCRIPTION="k-mer counter within reads for assemblies" HOMEPAGE="http://www.genome.umd.edu/jellyfish.html" -SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz - ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf" +SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz" # older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 @@ -48,5 +47,5 @@ src_install(){ mv "${ED}"/usr/include/"${P}"/"${PN}"/* "${ED}/usr/include/${PN}${SLOT}/" || die rm -r "${ED}/usr/include/${P}" || die mv "${ED}"/usr/share/man/man1/jellyfish.1 "${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die - dodoc "${DISTDIR}"/JellyfishUserGuide.pdf + dodoc doc/jellyfish.pdf }