* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-04-23 14:38 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-04-23 14:38 UTC (permalink / raw
To: gentoo-commits
commit: 2c7b47b7e6de8a6c1fc57e2c947d13a52a0782a2
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon Apr 23 14:37:44 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon Apr 23 14:37:44 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2c7b47b7
sci-mathematics/petsc: avoid double prefix
Package-Manager: Portage-2.3.31, Repoman-2.3.9
sci-mathematics/petsc/{petsc-3.9.0.ebuild => petsc-3.9.0-r1.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-mathematics/petsc/petsc-3.9.0.ebuild b/sci-mathematics/petsc/petsc-3.9.0-r1.ebuild
similarity index 99%
rename from sci-mathematics/petsc/petsc-3.9.0.ebuild
rename to sci-mathematics/petsc/petsc-3.9.0-r1.ebuild
index e2f57c04f..1755e242a 100644
--- a/sci-mathematics/petsc/petsc-3.9.0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.9.0-r1.ebuild
@@ -181,7 +181,7 @@ src_configure() {
}
src_install() {
- emake DESTDIR="${D}/usr/$(get_libdir)/petsc" install
+ emake DESTDIR="${ED}" install
# add PETSC_DIR to environmental variables
cat >> 99petsc <<- EOF
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2019-07-12 12:12 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2019-07-12 12:12 UTC (permalink / raw
To: gentoo-commits
commit: b3ce34b463fb20b65ade548d959fae9ac81ed606
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 12 12:12:08 2019 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Fri Jul 12 12:12:08 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3ce34b4
sci-mathematics/petsc: switch back to EAPI 6 for the time being
Package-Manager: Portage-2.3.68, Repoman-2.3.16
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.11.3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-mathematics/petsc/petsc-3.11.3.ebuild b/sci-mathematics/petsc/petsc-3.11.3.ebuild
index 59a9cff21..99676386d 100644
--- a/sci-mathematics/petsc/petsc-3.11.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.11.3.ebuild
@@ -1,7 +1,7 @@
# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=6
PYTHON_COMPAT=( python2_7 )
^ permalink raw reply related [flat|nested] 59+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2019-07-12 11:19 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2019-07-12 11:19 UTC (permalink / raw
To: gentoo-commits
commit: 817744adda580e8ccdbc83ec6b29e00426f83591
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 12 10:58:53 2019 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Fri Jul 12 10:58:53 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=817744ad
sci-mathematics/petsc: version bump to 3.11.3
Package-Manager: Portage-2.3.68, Repoman-2.3.16
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.11.3.ebuild | 191 ++++++++++++++++++++++++++++++
1 file changed, 191 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.11.3.ebuild b/sci-mathematics/petsc/petsc-3.11.3.ebuild
new file mode 100644
index 000000000..59a9cff21
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.11.3.ebuild
@@ -0,0 +1,191 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
+)
+
+src_prepare() {
+ default
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake:BOOL=1 \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ EOF
+ doenvd 99petsc
+
+ if use doc ; then
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2019-07-12 11:19 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2019-07-12 11:19 UTC (permalink / raw
To: gentoo-commits
commit: 0b1e1d868ca34c28fcfbcb5e30d2ed0e63c94039
Author: Bernd Waibel <waebbl <AT> gmail <DOT> com>
AuthorDate: Fri Nov 9 16:36:54 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Fri Jul 12 10:55:21 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0b1e1d86
sci-mathematics/petsc: fix blas configuration error
* add blas to call to pkg-config for blas/lapack
* make EAPI 7 compatible, remove versionator.eclass
* change --with-cmake= variable to avoid warning
Thanks to @ycoudier for hint on pkg-config
Suggested-by: @ycoudier
Closes: https://bugs.gentoo.org/669040
Closes: https://github.com/gentoo/sci/issues/892
Package-Manager: Portage-2.3.51, Repoman-2.3.12
Signed-off-by: Bernd Waibel <waebbl <AT> gmail.com>
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.10.0.ebuild | 14 +++++---------
1 file changed, 5 insertions(+), 9 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.10.0.ebuild b/sci-mathematics/petsc/petsc-3.10.0.ebuild
index b67536ef6..80dfd5255 100644
--- a/sci-mathematics/petsc/petsc-3.10.0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.10.0.ebuild
@@ -1,17 +1,15 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 )
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
+inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
LICENSE="BSD-2"
SLOT="0"
@@ -54,8 +52,6 @@ DEPEND="${RDEPEND}
dev-util/cmake
"
-S="${WORKDIR}/${MY_P}"
-
PATCHES=(
"${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
"${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
@@ -143,7 +139,7 @@ src_configure() {
--with-petsc-arch=${PETSC_ARCH} \
--with-precision=double \
--with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
$(petsc_enable debug debugging) \
$(petsc_enable mpi) \
$(petsc_select mpi cc mpicc $(tc-getCC)) \
@@ -154,7 +150,7 @@ src_configure() {
$(petsc_select complex-scalars scalar-type complex real) \
--with-windows-graphics=0 \
--with-matlab=0 \
- --with-cmake=cmake \
+ --with-cmake:BOOL=1 \
$(petsc_enable threads pthread) \
$(petsc_with afterimage afterimage \
/usr/include/libAfterImage -lAfterImage) \
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2019-07-12 11:19 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2019-07-12 11:19 UTC (permalink / raw
To: gentoo-commits
commit: fcbf3687c7f71449e326be09015c1e7f6fb6d655
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 12 10:53:40 2019 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Fri Jul 12 10:55:24 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fcbf3687
sci-mathematics/petsc: also apply patches to 3.10.4 and 3.11.1
Package-Manager: Portage-2.3.68, Repoman-2.3.16
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.10.4.ebuild | 14 +++++---------
sci-mathematics/petsc/petsc-3.11.1.ebuild | 14 +++++---------
2 files changed, 10 insertions(+), 18 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.10.4.ebuild b/sci-mathematics/petsc/petsc-3.10.4.ebuild
index bc9a4b110..418196a8d 100644
--- a/sci-mathematics/petsc/petsc-3.10.4.ebuild
+++ b/sci-mathematics/petsc/petsc-3.10.4.ebuild
@@ -5,13 +5,11 @@ EAPI=6
PYTHON_COMPAT=( python2_7 )
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
+inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
LICENSE="BSD-2"
SLOT="0"
@@ -54,8 +52,6 @@ DEPEND="${RDEPEND}
dev-util/cmake
"
-S="${WORKDIR}/${MY_P}"
-
PATCHES=(
"${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
"${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
@@ -83,7 +79,7 @@ petsc_with() {
shift 3
myuse="${myuse} --with-${p}-lib=$@"
else
- myuse="${myuse}"
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
fi
else
myuse="--with-${p}=0"
@@ -143,7 +139,7 @@ src_configure() {
--with-petsc-arch=${PETSC_ARCH} \
--with-precision=double \
--with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
$(petsc_enable debug debugging) \
$(petsc_enable mpi) \
$(petsc_select mpi cc mpicc $(tc-getCC)) \
@@ -154,7 +150,7 @@ src_configure() {
$(petsc_select complex-scalars scalar-type complex real) \
--with-windows-graphics=0 \
--with-matlab=0 \
- --with-cmake=true \
+ --with-cmake:BOOL=1 \
$(petsc_enable threads pthread) \
$(petsc_with afterimage afterimage \
/usr/include/libAfterImage -lAfterImage) \
diff --git a/sci-mathematics/petsc/petsc-3.11.1.ebuild b/sci-mathematics/petsc/petsc-3.11.1.ebuild
index e6517c680..99676386d 100644
--- a/sci-mathematics/petsc/petsc-3.11.1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.11.1.ebuild
@@ -5,13 +5,11 @@ EAPI=6
PYTHON_COMPAT=( python2_7 )
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
+inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
LICENSE="BSD-2"
SLOT="0"
@@ -54,8 +52,6 @@ DEPEND="${RDEPEND}
dev-util/cmake
"
-S="${WORKDIR}/${MY_P}"
-
PATCHES=(
"${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
"${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
@@ -83,7 +79,7 @@ petsc_with() {
shift 3
myuse="${myuse} --with-${p}-lib=$@"
else
- myuse="${myuse}"
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
fi
else
myuse="--with-${p}=0"
@@ -143,7 +139,7 @@ src_configure() {
--with-petsc-arch=${PETSC_ARCH} \
--with-precision=double \
--with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
$(petsc_enable debug debugging) \
$(petsc_enable mpi) \
$(petsc_select mpi cc mpicc $(tc-getCC)) \
@@ -154,7 +150,7 @@ src_configure() {
$(petsc_select complex-scalars scalar-type complex real) \
--with-windows-graphics=0 \
--with-matlab=0 \
- --with-cmake=true \
+ --with-cmake:BOOL=1 \
$(petsc_enable threads pthread) \
$(petsc_with afterimage afterimage \
/usr/include/libAfterImage -lAfterImage) \
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2019-05-13 15:02 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2019-05-13 15:02 UTC (permalink / raw
To: gentoo-commits
commit: 2fffe2a798dc609fed219854bfd8a74a7470f250
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon May 13 14:49:54 2019 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon May 13 15:02:21 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2fffe2a7
sci-mathematics/petsc: version bump to 3.11.1
Package-Manager: Portage-2.3.66, Repoman-2.3.12
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.11.1.ebuild | 195 ++++++++++++++++++++++++++++++
1 file changed, 195 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.11.1.ebuild b/sci-mathematics/petsc/petsc-3.11.1.ebuild
new file mode 100644
index 000000000..e6517c680
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.11.1.ebuild
@@ -0,0 +1,195 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
+)
+
+src_prepare() {
+ default
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=true \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ EOF
+ doenvd 99petsc
+
+ if use doc ; then
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2019-03-09 6:07 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2019-03-09 6:07 UTC (permalink / raw
To: gentoo-commits
commit: f05910d7ef4b0be4822d8ceb59ba9606edaf14b4
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 9 05:41:08 2019 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Sat Mar 9 06:07:10 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f05910d7
sci-mathematics/petsc: version bump to 3.10.4
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.10.4.ebuild | 196 ++++++++++++++++++++++++++++++
1 file changed, 196 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.10.4.ebuild b/sci-mathematics/petsc/petsc-3.10.4.ebuild
new file mode 100644
index 000000000..bc9a4b110
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.10.4.ebuild
@@ -0,0 +1,196 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
+)
+
+src_prepare() {
+ default
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=true \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ EOF
+ doenvd 99petsc
+
+ if use doc ; then
+ dodoc docs/developers.pdf docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-09-17 15:41 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-09-17 15:41 UTC (permalink / raw
To: gentoo-commits
commit: e9aa00ee0ca860b1047a9d25b83e4d2cc06269f9
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 17 15:14:18 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon Sep 17 15:14:18 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e9aa00ee
sci-mathematics/petsc: drop old 3.9*
Package-Manager: Portage-2.3.49, Repoman-2.3.10
sci-mathematics/petsc/petsc-3.9.2.ebuild | 196 -------------------------------
sci-mathematics/petsc/petsc-3.9.3.ebuild | 196 -------------------------------
2 files changed, 392 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.9.2.ebuild b/sci-mathematics/petsc/petsc-3.9.2.ebuild
deleted file mode 100644
index 1755e242a..000000000
--- a/sci-mathematics/petsc/petsc-3.9.2.ebuild
+++ /dev/null
@@ -1,196 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
- "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
-)
-
-src_prepare() {
- default
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- EOF
- doenvd 99petsc
-
- if use doc ; then
- dodoc docs/developers.pdf docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
diff --git a/sci-mathematics/petsc/petsc-3.9.3.ebuild b/sci-mathematics/petsc/petsc-3.9.3.ebuild
deleted file mode 100644
index 1755e242a..000000000
--- a/sci-mathematics/petsc/petsc-3.9.3.ebuild
+++ /dev/null
@@ -1,196 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
- "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
-)
-
-src_prepare() {
- default
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- EOF
- doenvd 99petsc
-
- if use doc ; then
- dodoc docs/developers.pdf docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-09-17 15:41 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-09-17 15:41 UTC (permalink / raw
To: gentoo-commits
commit: ee52cea13773352cc13756c29cd0703acf61996d
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 17 15:13:55 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon Sep 17 15:13:55 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ee52cea1
sci-mathematics/petsc: version bump to 3.9.4
Package-Manager: Portage-2.3.49, Repoman-2.3.10
sci-mathematics/petsc/petsc-3.9.4.ebuild | 196 +++++++++++++++++++++++++++++++
1 file changed, 196 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.9.4.ebuild b/sci-mathematics/petsc/petsc-3.9.4.ebuild
new file mode 100644
index 000000000..1755e242a
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.9.4.ebuild
@@ -0,0 +1,196 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
+)
+
+src_prepare() {
+ default
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ EOF
+ doenvd 99petsc
+
+ if use doc ; then
+ dodoc docs/developers.pdf docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-09-17 15:41 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-09-17 15:41 UTC (permalink / raw
To: gentoo-commits
commit: 4e74b4feb6ee3dfcc3b6950869b21ef2c0cb1572
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 17 15:26:19 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon Sep 17 15:26:19 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4e74b4fe
sci-mathematics/petsc: version bump to 3.10.0
Package-Manager: Portage-2.3.49, Repoman-2.3.10
sci-mathematics/petsc/petsc-3.10.0.ebuild | 196 ++++++++++++++++++++++++++++++
1 file changed, 196 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.10.0.ebuild b/sci-mathematics/petsc/petsc-3.10.0.ebuild
new file mode 100644
index 000000000..1755e242a
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.10.0.ebuild
@@ -0,0 +1,196 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
+)
+
+src_prepare() {
+ default
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ EOF
+ doenvd 99petsc
+
+ if use doc ; then
+ dodoc docs/developers.pdf docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-08-31 15:39 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-08-31 15:39 UTC (permalink / raw
To: gentoo-commits
commit: aee6b7af41bd5cf104e923ec8dd68db883bcdb80
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Aug 31 03:27:16 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Fri Aug 31 03:27:16 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aee6b7af
sci-mathematics/petsc: version bump to 3.9.3
Package-Manager: Portage-2.3.48, Repoman-2.3.10
sci-mathematics/petsc/petsc-3.9.3.ebuild | 196 +++++++++++++++++++++++++++++++
1 file changed, 196 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.9.3.ebuild b/sci-mathematics/petsc/petsc-3.9.3.ebuild
new file mode 100644
index 000000000..1755e242a
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.9.3.ebuild
@@ -0,0 +1,196 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
+)
+
+src_prepare() {
+ default
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ EOF
+ doenvd 99petsc
+
+ if use doc ; then
+ dodoc docs/developers.pdf docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-08-31 15:39 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-08-31 15:39 UTC (permalink / raw
To: gentoo-commits
commit: df3b9cb9a21f4e45de635f25cfec8b7c0ee42e74
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Aug 31 03:24:28 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Fri Aug 31 03:24:28 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=df3b9cb9
sci-mathematics/petsc: drop old
Package-Manager: Portage-2.3.48, Repoman-2.3.10
sci-mathematics/petsc/petsc-3.9.0-r1.ebuild | 196 ----------------------------
1 file changed, 196 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.9.0-r1.ebuild b/sci-mathematics/petsc/petsc-3.9.0-r1.ebuild
deleted file mode 100644
index 1755e242a..000000000
--- a/sci-mathematics/petsc/petsc-3.9.0-r1.ebuild
+++ /dev/null
@@ -1,196 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
- "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
-)
-
-src_prepare() {
- default
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- EOF
- doenvd 99petsc
-
- if use doc ; then
- dodoc docs/developers.pdf docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-05-24 1:21 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-05-24 1:21 UTC (permalink / raw
To: gentoo-commits
commit: 3769248d3d8e5d30c3ef5352d244f13459b6add7
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Thu May 24 01:08:24 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Thu May 24 01:20:13 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3769248d
sci-mathematics/petsc: version bump to 3.9.2
Package-Manager: Portage-2.3.38, Repoman-2.3.9
sci-mathematics/petsc/petsc-3.9.2.ebuild | 196 +++++++++++++++++++++++++++++++
1 file changed, 196 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.9.2.ebuild b/sci-mathematics/petsc/petsc-3.9.2.ebuild
new file mode 100644
index 000000000..1755e242a
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.9.2.ebuild
@@ -0,0 +1,196 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch
+)
+
+src_prepare() {
+ default
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ EOF
+ doenvd 99petsc
+
+ if use doc ; then
+ dodoc docs/developers.pdf docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-04-23 1:55 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-04-23 1:55 UTC (permalink / raw
To: gentoo-commits
commit: 0ee1bc73eba5a795a6ec837691cce3d19fe6962f
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon Apr 23 01:54:52 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon Apr 23 01:54:52 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ee1bc73
sci-mathematics/petsc: remove upstream workaround for -j1 in 3.9.0
Apparently this is not needed anymore. *hooray*
Package-Manager: Portage-2.3.31, Repoman-2.3.9
sci-mathematics/petsc/petsc-3.9.0.ebuild | 9 ---------
1 file changed, 9 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.9.0.ebuild b/sci-mathematics/petsc/petsc-3.9.0.ebuild
index 37def4450..e2f57c04f 100644
--- a/sci-mathematics/petsc/petsc-3.9.0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.9.0.ebuild
@@ -54,15 +54,6 @@ DEPEND="${RDEPEND}
dev-util/cmake
"
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-# V=1 enables verbose output with full compiler and linker invocation
-#
-MAKEOPTS="${MAKEOPTS} -j1 V=1"
-
S="${WORKDIR}/${MY_P}"
PATCHES=(
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-03-29 22:16 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-03-29 22:16 UTC (permalink / raw
To: gentoo-commits
commit: 2dee653ff1d3c49dc699bbfa6bd775b15d247dcf
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Thu Mar 29 22:09:26 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Thu Mar 29 22:09:26 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2dee653f
sci-mathematics/petsc: version bump to 3.8.4
Package-Manager: Portage-2.3.26, Repoman-2.3.7
sci-mathematics/petsc/{petsc-3.8.3-r1.ebuild => petsc-3.8.4.ebuild} | 0
1 file changed, 0 insertions(+), 0 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.8.3-r1.ebuild b/sci-mathematics/petsc/petsc-3.8.4.ebuild
similarity index 100%
rename from sci-mathematics/petsc/petsc-3.8.3-r1.ebuild
rename to sci-mathematics/petsc/petsc-3.8.4.ebuild
^ permalink raw reply [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-03-19 3:49 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-03-19 3:49 UTC (permalink / raw
To: gentoo-commits
commit: 4590faa4d554a9c522212cc005449082adcc413b
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon Mar 19 03:48:48 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon Mar 19 03:48:48 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4590faa4
sci-mathematics/petsc: fix dependencies, drop old
Package-Manager: Portage-2.3.24, Repoman-2.3.6
sci-mathematics/petsc/petsc-3.5.4.ebuild | 243 --------------------
sci-mathematics/petsc/petsc-3.6.4.ebuild | 251 ---------------------
.../{petsc-3.7.7.ebuild => petsc-3.7.7-r1.ebuild} | 5 +-
.../{petsc-3.8.3.ebuild => petsc-3.8.3-r1.ebuild} | 5 +-
4 files changed, 6 insertions(+), 498 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.5.4.ebuild b/sci-mathematics/petsc/petsc-3.5.4.ebuild
deleted file mode 100644
index c70fcf2cb..000000000
--- a/sci-mathematics/petsc/petsc-3.5.4.ebuild
+++ /dev/null
@@ -1,243 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- hdf5? ( mpi )
- hypre? ( cxx mpi )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- ^^ ( hypre superlu )
-"
-# imagemagick? ( X )
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
- X? ( x11-libs/libX11 )
-"
-# metis? ( sci-libs/parmetis )
-# imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-MAKEOPTS="${MAKEOPTS} -j1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${PN}-3.5.3-disable-rpath.patch
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
-
- # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
- petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
- }
- # add external library:
- # petsc_with use_flag libname libdir
- # petsc_with use_flag libname include linking_libs
- petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
- }
-
- # select between configure options depending on use flag
- petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
- }
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on Cxx builds is enabled if possible
- # i.e. when not using complex scalars
- # (no complex type for both available at the same time)
-
- # run petsc configure script
- econf \
- scrollOutput=1 \
- CFLAGS="${CFLAGS}" \
- CXXFLAGS="${CXXFLAGS}" \
- LDFLAGS="${LDFLAGS}" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-
-# not yet tested:
-# python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-# $(petsc_with imagemagick imagemagick \
-# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-# $(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
- # petsc install structure is very different from
- # installing headers to /usr/include/petsc and lib to /usr/lib
- # it also installs many unneeded executables and scripts
- # so manual install is easier than cleanup after "emake install"
- insinto /usr/include/${PN}
- doins include/*.h*
- insinto /usr/include/${PN}/${PETSC_ARCH}/include
- doins ${PETSC_ARCH}/include/*
- if use fortran; then
- insinto /usr/include/${PN}/finclude
- doins -r include/finclude/*
- fi
- if ! use mpi ; then
- insinto /usr/include/${PN}/mpiuni
- doins include/mpiuni/*.h
- fi
- insinto /usr/include/${PN}/conf
- doins conf/{variables,rules,test}
- insinto /usr/include/${PN}/${PETSC_ARCH}/conf
- doins ${PETSC_ARCH}/conf/{petscrules,petscvariables,RDict.db}
- insinto /usr/include/${PN}/petsc-private
- doins include/petsc-private/*.h
-
- # fix configuration files: replace "${S}" by installed location
- sed -i \
- -e "s:"${S}"::g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
- -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:usr/lib:usr/$(get_libdir):g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
- # add information about installation directory and
- # PETSC_ARCH to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_ARCH=${PETSC_ARCH}
- PETSC_DIR=${EPREFIX}/usr/include/${PN}
- EOF
- doenvd 99petsc
-
- dolib.so ${PETSC_ARCH}/lib/*.so
- dolib.so ${PETSC_ARCH}/lib/*.so.*
-
- if use doc ; then
- einfo "installing documentation (this could take a while)"
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
diff --git a/sci-mathematics/petsc/petsc-3.6.4.ebuild b/sci-mathematics/petsc/petsc-3.6.4.ebuild
deleted file mode 100644
index db6b92d04..000000000
--- a/sci-mathematics/petsc/petsc-3.6.4.ebuild
+++ /dev/null
@@ -1,251 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- hdf5? ( mpi )
- hypre? ( cxx mpi )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- ^^ ( hypre superlu )
-"
-# imagemagick? ( X )
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
- X? ( x11-libs/libX11 )
-"
-# metis? ( sci-libs/parmetis )
-# imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-MAKEOPTS="${MAKEOPTS} -j1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-3.6.0-disable-rpath.patch \
- "${FILESDIR}"/${PN}-3.6.0-fix_sandbox_violation.patch
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
-
- # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
- petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
- }
- # add external library:
- # petsc_with use_flag libname libdir
- # petsc_with use_flag libname include linking_libs
- petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
- }
-
- # select between configure options depending on use flag
- petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
- }
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on Cxx builds is enabled if possible
- # i.e. when not using complex scalars
- # (no complex type for both available at the same time)
-
- # run petsc configure script
- econf \
- scrollOutput=1 \
- CFLAGS="${CFLAGS}" \
- CXXFLAGS="${CXXFLAGS}" \
- LDFLAGS="${LDFLAGS}" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-
-# not yet tested:
-# python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-# $(petsc_with imagemagick imagemagick \
-# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-# $(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
- # petsc install structure is very different from
- # installing headers to /usr/include/petsc and lib to /usr/lib
- # it also installs many unneeded executables and scripts
- # so manual install is easier than cleanup after "emake install"
- insinto /usr/include/${PN}
- doins include/*.h*
- insinto /usr/include/${PN}/${PETSC_ARCH}/include
- doins ${PETSC_ARCH}/include/*
- if use fortran; then
- insinto /usr/include/${PN}/finclude
- doins -r include/${PN}/finclude/*
- fi
- if ! use mpi ; then
- insinto /usr/include/${PN}/mpiuni
- doins include/mpiuni/*.h
- fi
- insinto /usr/include/${PN}/conf
- doins lib/${PN}/conf/{variables,rules,test}
- insinto /usr/include/${PN}/${PETSC_ARCH}/conf
- doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
- insinto /usr/include/${PN}/private
- doins include/${PN}/private/*.h
-
- # fix configuration files: replace "${S}" by installed location
- sed -i \
- -e "s:"${S}"::g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
- -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:usr/lib:usr/$(get_libdir):g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
- # fix the include path of petscvariables in lib/${PN}/conf/variables
- # bug #559172
- sed -i -e 's#lib/petsc/conf/#conf/#g' \
- "${ED}"/usr/include/${PN}/conf/variables || die
-
- # add information about installation directory and
- # PETSC_ARCH to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_ARCH=${PETSC_ARCH}
- PETSC_DIR=${EPREFIX}/usr/include/${PN}
- EOF
- doenvd 99petsc
-
- dolib.so ${PETSC_ARCH}/lib/*.so
- dolib.so ${PETSC_ARCH}/lib/*.so.*
-
- if use doc ; then
- einfo "installing documentation (this could take a while)"
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
diff --git a/sci-mathematics/petsc/petsc-3.7.7.ebuild b/sci-mathematics/petsc/petsc-3.7.7-r1.ebuild
similarity index 98%
rename from sci-mathematics/petsc/petsc-3.7.7.ebuild
rename to sci-mathematics/petsc/petsc-3.7.7-r1.ebuild
index 4d8a2953f..ddd6202e0 100644
--- a/sci-mathematics/petsc/petsc-3.7.7.ebuild
+++ b/sci-mathematics/petsc/petsc-3.7.7-r1.ebuild
@@ -23,11 +23,12 @@ IUSE="afterimage boost complex-scalars cxx debug doc fftw
# if both are enabled
REQUIRED_USE="
afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
hdf5? ( mpi )
- hypre? ( cxx mpi )
+ hypre? ( cxx mpi !superlu )
mumps? ( mpi scotch )
scotch? ( mpi )
- ^^ ( hypre superlu )
+ superlu? ( !hypre )
"
RDEPEND="
diff --git a/sci-mathematics/petsc/petsc-3.8.3.ebuild b/sci-mathematics/petsc/petsc-3.8.3-r1.ebuild
similarity index 98%
rename from sci-mathematics/petsc/petsc-3.8.3.ebuild
rename to sci-mathematics/petsc/petsc-3.8.3-r1.ebuild
index 33ec0bd93..17757f6c0 100644
--- a/sci-mathematics/petsc/petsc-3.8.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.8.3-r1.ebuild
@@ -23,11 +23,12 @@ IUSE="afterimage boost complex-scalars cxx debug doc fftw
# if both are enabled
REQUIRED_USE="
afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
hdf5? ( mpi )
- hypre? ( cxx mpi )
+ hypre? ( cxx mpi !superlu )
mumps? ( mpi scotch )
scotch? ( mpi )
- ^^ ( hypre superlu )
+ superlu? ( !hypre )
"
RDEPEND="
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2018-03-19 3:40 Matthias Maier
0 siblings, 0 replies; 59+ messages in thread
From: Matthias Maier @ 2018-03-19 3:40 UTC (permalink / raw
To: gentoo-commits
commit: 70aa1dbe7740a0b5d68c0b274c6f98b4c95eb6ec
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Mon Mar 19 03:26:56 2018 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Mon Mar 19 03:26:56 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=70aa1dbe
sci-mathematics/petsc: update 3.7.* to 3.7.7
Package-Manager: Portage-2.3.24, Repoman-2.3.6
sci-mathematics/petsc/{petsc-3.7.6.ebuild => petsc-3.7.7.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-mathematics/petsc/petsc-3.7.6.ebuild b/sci-mathematics/petsc/petsc-3.7.7.ebuild
similarity index 99%
rename from sci-mathematics/petsc/petsc-3.7.6.ebuild
rename to sci-mathematics/petsc/petsc-3.7.7.ebuild
index 37c89710d..4d8a2953f 100644
--- a/sci-mathematics/petsc/petsc-3.7.6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.7.7.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2017-10-03 12:58 Andrew Savchenko
0 siblings, 0 replies; 59+ messages in thread
From: Andrew Savchenko @ 2017-10-03 12:58 UTC (permalink / raw
To: gentoo-commits
commit: 259e26e9a8fcb27f9ecd4a026b1edbdb00cd29c1
Author: Andrew Savchenko <bircoph <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 3 12:57:03 2017 +0000
Commit: Andrew Savchenko <bircoph <AT> gentoo <DOT> org>
CommitDate: Tue Oct 3 12:57:03 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=259e26e9
sci-mathematics/petsc: fix build on knem setups
If host MPI is configured to use knem, petsc needs to access /dev/knem as well.
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Signed-off-by: Andrew Savchenko <bircoph <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.7.6.ebuild | 2 ++
1 file changed, 2 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.7.6.ebuild b/sci-mathematics/petsc/petsc-3.7.6.ebuild
index c9c04f3e1..37c89710d 100644
--- a/sci-mathematics/petsc/petsc-3.7.6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.7.6.ebuild
@@ -111,6 +111,8 @@ src_configure() {
# mitigate because it happens in libpciaccess.so called by libhwloc.so,
# which is used by libmpi.so.
addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
# configureMPITypes with openmpi-2* insists on accessing the scaling
# governor rw.
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2017-10-03 12:58 Andrew Savchenko
0 siblings, 0 replies; 59+ messages in thread
From: Andrew Savchenko @ 2017-10-03 12:58 UTC (permalink / raw
To: gentoo-commits
commit: 8cb375f4224fad6ee34b57d8e8ed39147de41b6c
Author: Andrew Savchenko <bircoph <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 3 12:54:04 2017 +0000
Commit: Andrew Savchenko <bircoph <AT> gentoo <DOT> org>
CommitDate: Tue Oct 3 12:54:04 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8cb375f4
sci-mathematics/petsc: fix superlu version requirement
>=sci-libs/superlu-5 is required, see
https://lists.debian.org/debian-science/2016/05/msg00059.html
This also happens at our local Gentoo HPC setup.
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Signed-off-by: Andrew Savchenko <bircoph <AT> gentoo.org>
sci-mathematics/petsc/petsc-3.7.6.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-mathematics/petsc/petsc-3.7.6.ebuild b/sci-mathematics/petsc/petsc-3.7.6.ebuild
index 784371ed3..c9c04f3e1 100644
--- a/sci-mathematics/petsc/petsc-3.7.6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.7.6.ebuild
@@ -43,7 +43,7 @@ RDEPEND="
mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
scotch? ( sci-libs/scotch[mpi?] )
sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
+ superlu? ( >=sci-libs/superlu-5 )
X? ( x11-libs/libX11 )
"
^ permalink raw reply related [flat|nested] 59+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2017-01-08 11:03 Marius Brehler
0 siblings, 0 replies; 59+ messages in thread
From: Marius Brehler @ 2017-01-08 11:03 UTC (permalink / raw
To: gentoo-commits
commit: 73918b00c7bd72a5d20661b55d81b3493b5fa139
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Jan 6 20:12:46 2017 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri Jan 6 20:12:46 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=73918b00
sci-mathematics/petsc: version bump to 3.7.5
Package-Manager: Portage-2.3.0, Repoman-2.3.1
sci-mathematics/petsc/{petsc-3.7.4.ebuild => petsc-3.7.5.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-mathematics/petsc/petsc-3.7.4.ebuild b/sci-mathematics/petsc/petsc-3.7.5.ebuild
similarity index 99%
rename from sci-mathematics/petsc/petsc-3.7.4.ebuild
rename to sci-mathematics/petsc/petsc-3.7.5.ebuild
index ae26a85..8889ba8 100644
--- a/sci-mathematics/petsc/petsc-3.7.4.ebuild
+++ b/sci-mathematics/petsc/petsc-3.7.5.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-11-24 10:55 Marius Brehler
0 siblings, 0 replies; 59+ messages in thread
From: Marius Brehler @ 2016-11-24 10:55 UTC (permalink / raw
To: gentoo-commits
commit: aba912dd378338609d10389c6f8f021f60828fc3
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 24 03:47:11 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Thu Nov 24 03:47:11 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aba912dd
sci-mathematics/petsc: version bump to 3.7.4
Package-Manager: portage-2.3.0
sci-mathematics/petsc/{petsc-3.7.3.ebuild => petsc-3.7.4.ebuild} | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.7.3.ebuild b/sci-mathematics/petsc/petsc-3.7.4.ebuild
similarity index 98%
rename from sci-mathematics/petsc/petsc-3.7.3.ebuild
rename to sci-mathematics/petsc/petsc-3.7.4.ebuild
index 357189f..ae26a85 100644
--- a/sci-mathematics/petsc/petsc-3.7.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.7.4.ebuild
@@ -86,6 +86,10 @@ src_configure() {
# which is used by libmpi.so.
addpredict /proc/mtrr
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
petsc_enable() {
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-08-31 6:56 Marius Brehler
0 siblings, 0 replies; 59+ messages in thread
From: Marius Brehler @ 2016-08-31 6:56 UTC (permalink / raw
To: gentoo-commits
commit: a5a2b1bc8125c111d11d9474ae10accdbd9fc4c2
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 30 00:52:46 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Tue Aug 30 00:52:46 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a5a2b1bc
sci-mathematics/petsc: drop old
Package-Manager: portage-2.2.28
sci-mathematics/petsc/petsc-3.7.2.ebuild | 255 -------------------------------
1 file changed, 255 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.7.2.ebuild b/sci-mathematics/petsc/petsc-3.7.2.ebuild
deleted file mode 100644
index 3ca12ff..0000000
--- a/sci-mathematics/petsc/petsc-3.7.2.ebuild
+++ /dev/null
@@ -1,255 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- hdf5? ( mpi )
- hypre? ( cxx mpi )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- ^^ ( hypre superlu )
-"
-# imagemagick? ( X )
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
- X? ( x11-libs/libX11 )
-"
-# metis? ( sci-libs/parmetis )
-# imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-# V=1 enables verbose output with full compiler and linker invocation
-#
-MAKEOPTS="${MAKEOPTS} -j1 V=1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
- "${FILESDIR}"/${PN}-3.7.0-fix_sandbox_violation.patch
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
-
- # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
- petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
- }
- # add external library:
- # petsc_with use_flag libname libdir
- # petsc_with use_flag libname include linking_libs
- petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
- }
-
- # select between configure options depending on use flag
- petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
- }
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on Cxx builds is enabled if possible
- # i.e. when not using complex scalars
- # (no complex type for both available at the same time)
-
- # run petsc configure script
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-
-# not yet tested:
-# python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-# $(petsc_with imagemagick imagemagick \
-# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-# $(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
- # petsc install structure is very different from
- # installing headers to /usr/include/petsc and lib to /usr/lib
- # it also installs many unneeded executables and scripts
- # so manual install is easier than cleanup after "emake install"
- insinto /usr/include/${PN}
- doins include/*.h*
- insinto /usr/include/${PN}/${PETSC_ARCH}/include
- doins ${PETSC_ARCH}/include/*
- if use fortran; then
- insinto /usr/include/${PN}/finclude
- doins -r include/${PN}/finclude/*
- fi
- if ! use mpi ; then
- insinto /usr/include/${PN}/mpiuni
- doins include/mpiuni/*.h
- fi
- insinto /usr/include/${PN}/conf
- doins lib/${PN}/conf/{variables,rules,test}
- insinto /usr/include/${PN}/${PETSC_ARCH}/conf
- doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
- insinto /usr/include/${PN}/private
- doins include/${PN}/private/*.h
-
- # fix configuration files: replace "${S}" by installed location
- sed -i \
- -e "s:"${S}"::g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
- -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:usr/lib:usr/$(get_libdir):g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
- # fix the include path of petscvariables in lib/${PN}/conf/variables
- # bug #559172
- sed -i -e 's#lib/petsc/conf/#conf/#g' \
- "${ED}"/usr/include/${PN}/conf/variables || die
-
- # add information about installation directory and
- # PETSC_ARCH to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_ARCH=${PETSC_ARCH}
- PETSC_DIR=${EPREFIX}/usr/include/${PN}
- EOF
- doenvd 99petsc
-
- dolib.so ${PETSC_ARCH}/lib/*.so
- dolib.so ${PETSC_ARCH}/lib/*.so.*
-
- if use doc ; then
- einfo "installing documentation (this could take a while)"
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-08-31 6:56 Marius Brehler
0 siblings, 0 replies; 59+ messages in thread
From: Marius Brehler @ 2016-08-31 6:56 UTC (permalink / raw
To: gentoo-commits
commit: 7d46fb1d005394c121a9fab2585d50b13660e74e
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 30 00:52:06 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Tue Aug 30 00:52:29 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7d46fb1d
sci-mathematics/petsc: version bump to 3.7.3
Package-Manager: portage-2.2.28
sci-mathematics/petsc/petsc-3.7.3.ebuild | 255 +++++++++++++++++++++++++++++++
1 file changed, 255 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.7.3.ebuild b/sci-mathematics/petsc/petsc-3.7.3.ebuild
new file mode 100644
index 0000000..357189f
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.7.3.ebuild
@@ -0,0 +1,255 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="petsc"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
+# Failed: imagemagick metis
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ ^^ ( hypre superlu )
+"
+# imagemagick? ( X )
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( sci-libs/superlu )
+ X? ( x11-libs/libX11 )
+"
+# metis? ( sci-libs/parmetis )
+# imagemagick? ( media-gfx/imagemagick )
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+# cmake is used for parallel building
+# in some configuration setups, legacy build is used (slow)
+
+#
+# PETSc does not want its Makefiles to be invoked with anything higher than
+# -j1. The underlying build system does automatically invoke a parallel
+# build. This might not be what you want, but *hey* not your choice.
+#
+# V=1 enables verbose output with full compiler and linker invocation
+#
+MAKEOPTS="${MAKEOPTS} -j1 V=1"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.7.0-fix_sandbox_violation.patch
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
+ # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+ petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+ }
+ # add external library:
+ # petsc_with use_flag libname libdir
+ # petsc_with use_flag libname include linking_libs
+ petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+ }
+
+ # select between configure options depending on use flag
+ petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+ }
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on Cxx builds is enabled if possible
+ # i.e. when not using complex scalars
+ # (no complex type for both available at the same time)
+
+ # run petsc configure script
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+
+# not yet tested:
+# python bindings, netcdf, fftw
+
+# failed dependencies, perhaps fixed in upstream soon:
+# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
+# $(petsc_with imagemagick imagemagick \
+# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
+# $(petsc_enable threads pthreadclasses) \
+}
+
+src_install() {
+ # petsc install structure is very different from
+ # installing headers to /usr/include/petsc and lib to /usr/lib
+ # it also installs many unneeded executables and scripts
+ # so manual install is easier than cleanup after "emake install"
+ insinto /usr/include/${PN}
+ doins include/*.h*
+ insinto /usr/include/${PN}/${PETSC_ARCH}/include
+ doins ${PETSC_ARCH}/include/*
+ if use fortran; then
+ insinto /usr/include/${PN}/finclude
+ doins -r include/${PN}/finclude/*
+ fi
+ if ! use mpi ; then
+ insinto /usr/include/${PN}/mpiuni
+ doins include/mpiuni/*.h
+ fi
+ insinto /usr/include/${PN}/conf
+ doins lib/${PN}/conf/{variables,rules,test}
+ insinto /usr/include/${PN}/${PETSC_ARCH}/conf
+ doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
+ insinto /usr/include/${PN}/private
+ doins include/${PN}/private/*.h
+
+ # fix configuration files: replace "${S}" by installed location
+ sed -i \
+ -e "s:"${S}"::g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
+ -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:usr/lib:usr/$(get_libdir):g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
+
+ # fix the include path of petscvariables in lib/${PN}/conf/variables
+ # bug #559172
+ sed -i -e 's#lib/petsc/conf/#conf/#g' \
+ "${ED}"/usr/include/${PN}/conf/variables || die
+
+ # add information about installation directory and
+ # PETSC_ARCH to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_ARCH=${PETSC_ARCH}
+ PETSC_DIR=${EPREFIX}/usr/include/${PN}
+ EOF
+ doenvd 99petsc
+
+ dolib.so ${PETSC_ARCH}/lib/*.so
+ dolib.so ${PETSC_ARCH}/lib/*.so.*
+
+ if use doc ; then
+ einfo "installing documentation (this could take a while)"
+ dodoc docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-07-12 19:57 Marius Brehler
0 siblings, 0 replies; 59+ messages in thread
From: Marius Brehler @ 2016-07-12 19:57 UTC (permalink / raw
To: gentoo-commits
commit: 48f9a32050afb3cf4ded913f154a725f1861a197
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 9 16:39:09 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sat Jul 9 16:40:37 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=48f9a320
sci-mathematics/petsc: version bump to 3.5.4
Package-Manager: portage-2.2.28
sci-mathematics/petsc/{petsc-3.5.3.ebuild => petsc-3.5.4.ebuild} | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.5.3.ebuild b/sci-mathematics/petsc/petsc-3.5.4.ebuild
similarity index 98%
rename from sci-mathematics/petsc/petsc-3.5.3.ebuild
rename to sci-mathematics/petsc/petsc-3.5.4.ebuild
index 7c1d0b3..7838e5d 100644
--- a/sci-mathematics/petsc/petsc-3.5.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -69,7 +69,7 @@ MAKEOPTS="${MAKEOPTS} -j1"
S="${WORKDIR}/${MY_P}"
src_prepare() {
- epatch "${FILESDIR}"/${P%_*}-disable-rpath.patch
+ epatch "${FILESDIR}"/${PN}-3.5.3-disable-rpath.patch
sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-07-12 19:57 Marius Brehler
0 siblings, 0 replies; 59+ messages in thread
From: Marius Brehler @ 2016-07-12 19:57 UTC (permalink / raw
To: gentoo-commits
commit: a02841bb9ce8e70bd21ef6c65257d9467a85a47e
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 9 16:22:32 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sat Jul 9 16:33:56 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a02841bb
sci-mathematics/petsc: version bump to 3.7.2
Package-Manager: portage-2.2.28
sci-mathematics/petsc/petsc-3.7.2.ebuild | 255 +++++++++++++++++++++++++++++++
1 file changed, 255 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.7.2.ebuild b/sci-mathematics/petsc/petsc-3.7.2.ebuild
new file mode 100644
index 0000000..3ca12ff
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.7.2.ebuild
@@ -0,0 +1,255 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="petsc"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
+# Failed: imagemagick metis
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ ^^ ( hypre superlu )
+"
+# imagemagick? ( X )
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( sci-libs/superlu )
+ X? ( x11-libs/libX11 )
+"
+# metis? ( sci-libs/parmetis )
+# imagemagick? ( media-gfx/imagemagick )
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+# cmake is used for parallel building
+# in some configuration setups, legacy build is used (slow)
+
+#
+# PETSc does not want its Makefiles to be invoked with anything higher than
+# -j1. The underlying build system does automatically invoke a parallel
+# build. This might not be what you want, but *hey* not your choice.
+#
+# V=1 enables verbose output with full compiler and linker invocation
+#
+MAKEOPTS="${MAKEOPTS} -j1 V=1"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.7.0-fix_sandbox_violation.patch
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
+ # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+ petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+ }
+ # add external library:
+ # petsc_with use_flag libname libdir
+ # petsc_with use_flag libname include linking_libs
+ petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+ }
+
+ # select between configure options depending on use flag
+ petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+ }
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on Cxx builds is enabled if possible
+ # i.e. when not using complex scalars
+ # (no complex type for both available at the same time)
+
+ # run petsc configure script
+ econf \
+ scrollOutput=1 \
+ FFLAGS="${FFLAGS} -fPIC" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+
+# not yet tested:
+# python bindings, netcdf, fftw
+
+# failed dependencies, perhaps fixed in upstream soon:
+# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
+# $(petsc_with imagemagick imagemagick \
+# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
+# $(petsc_enable threads pthreadclasses) \
+}
+
+src_install() {
+ # petsc install structure is very different from
+ # installing headers to /usr/include/petsc and lib to /usr/lib
+ # it also installs many unneeded executables and scripts
+ # so manual install is easier than cleanup after "emake install"
+ insinto /usr/include/${PN}
+ doins include/*.h*
+ insinto /usr/include/${PN}/${PETSC_ARCH}/include
+ doins ${PETSC_ARCH}/include/*
+ if use fortran; then
+ insinto /usr/include/${PN}/finclude
+ doins -r include/${PN}/finclude/*
+ fi
+ if ! use mpi ; then
+ insinto /usr/include/${PN}/mpiuni
+ doins include/mpiuni/*.h
+ fi
+ insinto /usr/include/${PN}/conf
+ doins lib/${PN}/conf/{variables,rules,test}
+ insinto /usr/include/${PN}/${PETSC_ARCH}/conf
+ doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
+ insinto /usr/include/${PN}/private
+ doins include/${PN}/private/*.h
+
+ # fix configuration files: replace "${S}" by installed location
+ sed -i \
+ -e "s:"${S}"::g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
+ -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:usr/lib:usr/$(get_libdir):g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
+
+ # fix the include path of petscvariables in lib/${PN}/conf/variables
+ # bug #559172
+ sed -i -e 's#lib/petsc/conf/#conf/#g' \
+ "${ED}"/usr/include/${PN}/conf/variables || die
+
+ # add information about installation directory and
+ # PETSC_ARCH to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_ARCH=${PETSC_ARCH}
+ PETSC_DIR=${EPREFIX}/usr/include/${PN}
+ EOF
+ doenvd 99petsc
+
+ dolib.so ${PETSC_ARCH}/lib/*.so
+ dolib.so ${PETSC_ARCH}/lib/*.so.*
+
+ if use doc ; then
+ einfo "installing documentation (this could take a while)"
+ dodoc docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-07-12 19:57 Marius Brehler
0 siblings, 0 replies; 59+ messages in thread
From: Marius Brehler @ 2016-07-12 19:57 UTC (permalink / raw
To: gentoo-commits
commit: a4d74bf5cf42a039a93e81264382eb3bb159b052
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 9 16:35:21 2016 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sat Jul 9 16:35:21 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a4d74bf5
sci-mathematics/petsc: drop old
Package-Manager: portage-2.2.28
sci-mathematics/petsc/petsc-3.6.0.ebuild | 247 ------------------------------
sci-mathematics/petsc/petsc-3.6.3.ebuild | 247 ------------------------------
sci-mathematics/petsc/petsc-3.7.0.ebuild | 255 -------------------------------
3 files changed, 749 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild
deleted file mode 100644
index 58ff3bd..0000000
--- a/sci-mathematics/petsc/petsc-3.6.0.ebuild
+++ /dev/null
@@ -1,247 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- hdf5? ( mpi )
- hypre? ( cxx mpi )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- ^^ ( hypre superlu )
-"
-# imagemagick? ( X )
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
- X? ( x11-libs/libX11 )
-"
-# metis? ( sci-libs/parmetis )
-# imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-MAKEOPTS="${MAKEOPTS} -j1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P%_*}-disable-rpath.patch \
- "${FILESDIR}"/${P%_*}-fix_sandbox_violation.patch
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
-
- # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
- petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
- }
- # add external library:
- # petsc_with use_flag libname libdir
- # petsc_with use_flag libname include linking_libs
- petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
- }
-
- # select between configure options depending on use flag
- petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
- }
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on Cxx builds is enabled if possible
- # i.e. when not using complex scalars
- # (no complex type for both available at the same time)
-
- # run petsc configure script
- econf \
- scrollOutput=1 \
- CFLAGS="${CFLAGS}" \
- CXXFLAGS="${CXXFLAGS}" \
- LDFLAGS="${LDFLAGS}" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-
-# not yet tested:
-# python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-# $(petsc_with imagemagick imagemagick \
-# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-# $(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
- # petsc install structure is very different from
- # installing headers to /usr/include/petsc and lib to /usr/lib
- # it also installs many unneeded executables and scripts
- # so manual install is easier than cleanup after "emake install"
- insinto /usr/include/${PN}
- doins include/*.h*
- insinto /usr/include/${PN}/${PETSC_ARCH}/include
- doins ${PETSC_ARCH}/include/*
- if use fortran; then
- insinto /usr/include/${PN}/finclude
- doins -r include/${PN}/finclude/*
- fi
- if ! use mpi ; then
- insinto /usr/include/${PN}/mpiuni
- doins include/mpiuni/*.h
- fi
- insinto /usr/include/${PN}/conf
- doins lib/${PN}/conf/{variables,rules,test}
- insinto /usr/include/${PN}/${PETSC_ARCH}/conf
- doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
- insinto /usr/include/${PN}/private
- doins include/${PN}/private/*.h
-
- # fix configuration files: replace "${S}" by installed location
- sed -i \
- -e "s:"${S}"::g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
- -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:usr/lib:usr/$(get_libdir):g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
- # add information about installation directory and
- # PETSC_ARCH to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_ARCH=${PETSC_ARCH}
- PETSC_DIR=${EPREFIX}/usr/include/${PN}
- EOF
- doenvd 99petsc
-
- dolib.so ${PETSC_ARCH}/lib/*.so
- dolib.so ${PETSC_ARCH}/lib/*.so.*
-
- if use doc ; then
- einfo "installing documentation (this could take a while)"
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
diff --git a/sci-mathematics/petsc/petsc-3.6.3.ebuild b/sci-mathematics/petsc/petsc-3.6.3.ebuild
deleted file mode 100644
index 87537cb..0000000
--- a/sci-mathematics/petsc/petsc-3.6.3.ebuild
+++ /dev/null
@@ -1,247 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- hdf5? ( mpi )
- hypre? ( cxx mpi )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- ^^ ( hypre superlu )
-"
-# imagemagick? ( X )
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
- X? ( x11-libs/libX11 )
-"
-# metis? ( sci-libs/parmetis )
-# imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-MAKEOPTS="${MAKEOPTS} -j1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-3.6.0-disable-rpath.patch \
- "${FILESDIR}"/${PN}-3.6.0-fix_sandbox_violation.patch
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
-
- # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
- petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
- }
- # add external library:
- # petsc_with use_flag libname libdir
- # petsc_with use_flag libname include linking_libs
- petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
- }
-
- # select between configure options depending on use flag
- petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
- }
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on Cxx builds is enabled if possible
- # i.e. when not using complex scalars
- # (no complex type for both available at the same time)
-
- # run petsc configure script
- econf \
- scrollOutput=1 \
- CFLAGS="${CFLAGS}" \
- CXXFLAGS="${CXXFLAGS}" \
- LDFLAGS="${LDFLAGS}" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-
-# not yet tested:
-# python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-# $(petsc_with imagemagick imagemagick \
-# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-# $(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
- # petsc install structure is very different from
- # installing headers to /usr/include/petsc and lib to /usr/lib
- # it also installs many unneeded executables and scripts
- # so manual install is easier than cleanup after "emake install"
- insinto /usr/include/${PN}
- doins include/*.h*
- insinto /usr/include/${PN}/${PETSC_ARCH}/include
- doins ${PETSC_ARCH}/include/*
- if use fortran; then
- insinto /usr/include/${PN}/finclude
- doins -r include/${PN}/finclude/*
- fi
- if ! use mpi ; then
- insinto /usr/include/${PN}/mpiuni
- doins include/mpiuni/*.h
- fi
- insinto /usr/include/${PN}/conf
- doins lib/${PN}/conf/{variables,rules,test}
- insinto /usr/include/${PN}/${PETSC_ARCH}/conf
- doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
- insinto /usr/include/${PN}/private
- doins include/${PN}/private/*.h
-
- # fix configuration files: replace "${S}" by installed location
- sed -i \
- -e "s:"${S}"::g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
- -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:usr/lib:usr/$(get_libdir):g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
- # add information about installation directory and
- # PETSC_ARCH to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_ARCH=${PETSC_ARCH}
- PETSC_DIR=${EPREFIX}/usr/include/${PN}
- EOF
- doenvd 99petsc
-
- dolib.so ${PETSC_ARCH}/lib/*.so
- dolib.so ${PETSC_ARCH}/lib/*.so.*
-
- if use doc ; then
- einfo "installing documentation (this could take a while)"
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
diff --git a/sci-mathematics/petsc/petsc-3.7.0.ebuild b/sci-mathematics/petsc/petsc-3.7.0.ebuild
deleted file mode 100644
index bcf8cc5..0000000
--- a/sci-mathematics/petsc/petsc-3.7.0.ebuild
+++ /dev/null
@@ -1,255 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- hdf5? ( mpi )
- hypre? ( cxx mpi )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- ^^ ( hypre superlu )
-"
-# imagemagick? ( X )
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
- X? ( x11-libs/libX11 )
-"
-# metis? ( sci-libs/parmetis )
-# imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-# V=1 enables verbose output with full compiler and linker invocation
-#
-MAKEOPTS="${MAKEOPTS} -j1 V=1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-disable-rpath.patch \
- "${FILESDIR}"/${P}-fix_sandbox_violation.patch
-
- sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
-
- # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
- petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
- }
- # add external library:
- # petsc_with use_flag libname libdir
- # petsc_with use_flag libname include linking_libs
- petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
- }
-
- # select between configure options depending on use flag
- petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
- }
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on Cxx builds is enabled if possible
- # i.e. when not using complex scalars
- # (no complex type for both available at the same time)
-
- # run petsc configure script
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(petsc_with mumps mumps \
- /usr/include \
- [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(petsc_with boost) \
- $(petsc_with fftw)
-
-# not yet tested:
-# python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-# $(petsc_with imagemagick imagemagick \
-# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-# $(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
- # petsc install structure is very different from
- # installing headers to /usr/include/petsc and lib to /usr/lib
- # it also installs many unneeded executables and scripts
- # so manual install is easier than cleanup after "emake install"
- insinto /usr/include/${PN}
- doins include/*.h*
- insinto /usr/include/${PN}/${PETSC_ARCH}/include
- doins ${PETSC_ARCH}/include/*
- if use fortran; then
- insinto /usr/include/${PN}/finclude
- doins -r include/${PN}/finclude/*
- fi
- if ! use mpi ; then
- insinto /usr/include/${PN}/mpiuni
- doins include/mpiuni/*.h
- fi
- insinto /usr/include/${PN}/conf
- doins lib/${PN}/conf/{variables,rules,test}
- insinto /usr/include/${PN}/${PETSC_ARCH}/conf
- doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
- insinto /usr/include/${PN}/private
- doins include/${PN}/private/*.h
-
- # fix configuration files: replace "${S}" by installed location
- sed -i \
- -e "s:"${S}"::g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
- -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:usr/lib:usr/$(get_libdir):g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
- # fix the include path of petscvariables in lib/${PN}/conf/variables
- # bug #559172
- sed -i -e 's#lib/petsc/conf/#conf/#g' \
- "${ED}"/usr/include/${PN}/conf/variables || die
-
- # add information about installation directory and
- # PETSC_ARCH to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_ARCH=${PETSC_ARCH}
- PETSC_DIR=${EPREFIX}/usr/include/${PN}
- EOF
- doenvd 99petsc
-
- dolib.so ${PETSC_ARCH}/lib/*.so
- dolib.so ${PETSC_ARCH}/lib/*.so.*
-
- if use doc ; then
- einfo "installing documentation (this could take a while)"
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-04-23 23:21 Christoph Junghans
0 siblings, 0 replies; 59+ messages in thread
From: Christoph Junghans @ 2016-04-23 23:21 UTC (permalink / raw
To: gentoo-commits
commit: 4c50902cb7f54cf48e7c30b835cfd2c47ffdae57
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Apr 22 03:12:27 2016 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Fri Apr 22 03:12:27 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4c50902c
sci-mathematics/petsc: version bump to 3.6.4, fix bug #559172
Package-Manager: portage-2.2.26
sci-mathematics/petsc/petsc-3.6.4.ebuild | 252 +++++++++++++++++++++++++++++++
1 file changed, 252 insertions(+)
diff --git a/sci-mathematics/petsc/petsc-3.6.4.ebuild b/sci-mathematics/petsc/petsc-3.6.4.ebuild
new file mode 100644
index 0000000..cff1192
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.6.4.ebuild
@@ -0,0 +1,252 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="petsc"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
+# Failed: imagemagick metis
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ ^^ ( hypre superlu )
+"
+# imagemagick? ( X )
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( sci-libs/superlu )
+ X? ( x11-libs/libX11 )
+"
+# metis? ( sci-libs/parmetis )
+# imagemagick? ( media-gfx/imagemagick )
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+# cmake is used for parallel building
+# in some configuration setups, legacy build is used (slow)
+
+#
+# PETSc does not want its Makefiles to be invoked with anything higher than
+# -j1. The underlying build system does automatically invoke a parallel
+# build. This might not be what you want, but *hey* not your choice.
+#
+MAKEOPTS="${MAKEOPTS} -j1"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-3.6.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.6.0-fix_sandbox_violation.patch
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
+ # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+ petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+ }
+ # add external library:
+ # petsc_with use_flag libname libdir
+ # petsc_with use_flag libname include linking_libs
+ petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+ }
+
+ # select between configure options depending on use flag
+ petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+ }
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on Cxx builds is enabled if possible
+ # i.e. when not using complex scalars
+ # (no complex type for both available at the same time)
+
+ # run petsc configure script
+ econf \
+ scrollOutput=1 \
+ CFLAGS="${CFLAGS}" \
+ CXXFLAGS="${CXXFLAGS}" \
+ LDFLAGS="${LDFLAGS}" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+
+# not yet tested:
+# python bindings, netcdf, fftw
+
+# failed dependencies, perhaps fixed in upstream soon:
+# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
+# $(petsc_with imagemagick imagemagick \
+# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
+# $(petsc_enable threads pthreadclasses) \
+}
+
+src_install() {
+ # petsc install structure is very different from
+ # installing headers to /usr/include/petsc and lib to /usr/lib
+ # it also installs many unneeded executables and scripts
+ # so manual install is easier than cleanup after "emake install"
+ insinto /usr/include/${PN}
+ doins include/*.h*
+ insinto /usr/include/${PN}/${PETSC_ARCH}/include
+ doins ${PETSC_ARCH}/include/*
+ if use fortran; then
+ insinto /usr/include/${PN}/finclude
+ doins -r include/${PN}/finclude/*
+ fi
+ if ! use mpi ; then
+ insinto /usr/include/${PN}/mpiuni
+ doins include/mpiuni/*.h
+ fi
+ insinto /usr/include/${PN}/conf
+ doins lib/${PN}/conf/{variables,rules,test}
+ insinto /usr/include/${PN}/${PETSC_ARCH}/conf
+ doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
+ insinto /usr/include/${PN}/private
+ doins include/${PN}/private/*.h
+
+ # fix configuration files: replace "${S}" by installed location
+ sed -i \
+ -e "s:"${S}"::g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
+ -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:usr/lib:usr/$(get_libdir):g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
+
+ # fix the include path of petscvariables in lib/${PN}/conf/variables
+ # bug #559172
+ sed -i -e 's#lib/petsc/conf/#conf/#g' \
+ "${ED}"/usr/include/${PN}/conf/variables || die
+
+ # add information about installation directory and
+ # PETSC_ARCH to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_ARCH=${PETSC_ARCH}
+ PETSC_DIR=${EPREFIX}/usr/include/${PN}
+ EOF
+ doenvd 99petsc
+
+ dolib.so ${PETSC_ARCH}/lib/*.so
+ dolib.so ${PETSC_ARCH}/lib/*.so.*
+
+ if use doc ; then
+ einfo "installing documentation (this could take a while)"
+ dodoc docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2016-04-23 23:21 Christoph Junghans
0 siblings, 0 replies; 59+ messages in thread
From: Christoph Junghans @ 2016-04-23 23:21 UTC (permalink / raw
To: gentoo-commits
commit: 974ee970511dc54931a03656d26922dfc7c22fdb
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Fri Apr 22 02:52:53 2016 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Fri Apr 22 02:52:53 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=974ee970
sci-mathematics/petsc: remove obsolete elog message pointing to bug #53386
Package-Manager: portage-2.2.26
sci-mathematics/petsc/petsc-3.4.2.ebuild | 6 ------
sci-mathematics/petsc/petsc-3.5.3.ebuild | 6 ------
sci-mathematics/petsc/petsc-3.6.0.ebuild | 6 ------
sci-mathematics/petsc/petsc-3.6.3.ebuild | 6 ------
4 files changed, 24 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.4.2.ebuild b/sci-mathematics/petsc/petsc-3.4.2.ebuild
index 6a8dace..52e9a19 100644
--- a/sci-mathematics/petsc/petsc-3.4.2.ebuild
+++ b/sci-mathematics/petsc/petsc-3.4.2.ebuild
@@ -239,9 +239,3 @@ src_install() {
dohtml -r docs/*.html docs/changes docs/manualpages
fi
}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
-}
diff --git a/sci-mathematics/petsc/petsc-3.5.3.ebuild b/sci-mathematics/petsc/petsc-3.5.3.ebuild
index a5d339b..7c1d0b3 100644
--- a/sci-mathematics/petsc/petsc-3.5.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.3.ebuild
@@ -242,9 +242,3 @@ src_install() {
dohtml -r docs/*.html docs/changes docs/manualpages
fi
}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
-}
diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild
index 874eca0..58ff3bd 100644
--- a/sci-mathematics/petsc/petsc-3.6.0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.6.0.ebuild
@@ -245,9 +245,3 @@ src_install() {
dohtml -r docs/*.html docs/changes docs/manualpages
fi
}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
-}
diff --git a/sci-mathematics/petsc/petsc-3.6.3.ebuild b/sci-mathematics/petsc/petsc-3.6.3.ebuild
index dd3aed2..87537cb 100644
--- a/sci-mathematics/petsc/petsc-3.6.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.6.3.ebuild
@@ -245,9 +245,3 @@ src_install() {
dohtml -r docs/*.html docs/changes docs/manualpages
fi
}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
-}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2015-12-31 8:48 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2015-12-31 8:48 UTC (permalink / raw
To: gentoo-commits
commit: ea635c5ba9ce7015a7f3cf0f1aa1b8341e9c0eab
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Thu Dec 31 08:02:03 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Dec 31 08:02:21 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ea635c5b
sci-mathematics/petsc: version bump to 2.6.3
Package-Manager: portage-2.2.26
sci-mathematics/petsc/ChangeLog | 5 +
sci-mathematics/petsc/petsc-3.6.3.ebuild | 253 +++++++++++++++++++++++++++++++
2 files changed, 258 insertions(+)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index 861d62b..89fdf76 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+*petsc-3.6.3 (31 Dec 2015)
+
+ 31 Dec 2015; Matthias Maier <tamiko@gentoo.org> +petsc-3.6.3.ebuild:
+ sci-mathematics/petsc: version bump
+
01 Sep 2015; Marius Brehler <marbre@linux.sungazer.de> petsc-3.5.3.ebuild,
petsc-3.6.0.ebuild:
sci-mathematics/petsc: Add subslot for fftw dependency
diff --git a/sci-mathematics/petsc/petsc-3.6.3.ebuild b/sci-mathematics/petsc/petsc-3.6.3.ebuild
new file mode 100644
index 0000000..dd3aed2
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.6.3.ebuild
@@ -0,0 +1,253 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
+
+MY_P="${PN}-$(replace_version_separator _ -)"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="petsc"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="afterimage boost complex-scalars cxx debug doc fftw
+ fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
+# Failed: imagemagick metis
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ ^^ ( hypre superlu )
+"
+# imagemagick? ( X )
+
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[mpi?] )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( sci-libs/superlu )
+ X? ( x11-libs/libX11 )
+"
+# metis? ( sci-libs/parmetis )
+# imagemagick? ( media-gfx/imagemagick )
+
+DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
+ virtual/pkgconfig
+ dev-util/cmake
+"
+# cmake is used for parallel building
+# in some configuration setups, legacy build is used (slow)
+
+#
+# PETSc does not want its Makefiles to be invoked with anything higher than
+# -j1. The underlying build system does automatically invoke a parallel
+# build. This might not be what you want, but *hey* not your choice.
+#
+MAKEOPTS="${MAKEOPTS} -j1"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-3.6.0-disable-rpath.patch \
+ "${FILESDIR}"/${PN}-3.6.0-fix_sandbox_violation.patch
+
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
+ # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+ petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+ }
+ # add external library:
+ # petsc_with use_flag libname libdir
+ # petsc_with use_flag libname include linking_libs
+ petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+ }
+
+ # select between configure options depending on use flag
+ petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+ }
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ # C Support on Cxx builds is enabled if possible
+ # i.e. when not using complex scalars
+ # (no complex type for both available at the same time)
+
+ # run petsc configure script
+ econf \
+ scrollOutput=1 \
+ CFLAGS="${CFLAGS}" \
+ CXXFLAGS="${CXXFLAGS}" \
+ LDFLAGS="${LDFLAGS}" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-cmake=cmake \
+ $(petsc_enable threads pthread) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
+ $(petsc_with sparse suitesparse) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
+ $(petsc_with X x) \
+ $(petsc_with X x11) \
+ $(petsc_with scotch ptscotch \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack \
+ /usr/include/scalapack -lscalapack) \
+ $(petsc_with mumps mumps \
+ /usr/include \
+ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ --with-imagemagick=0 \
+ --with-python=0 \
+ $(petsc_with boost) \
+ $(petsc_with fftw)
+
+# not yet tested:
+# python bindings, netcdf, fftw
+
+# failed dependencies, perhaps fixed in upstream soon:
+# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
+# $(petsc_with imagemagick imagemagick \
+# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
+# $(petsc_enable threads pthreadclasses) \
+}
+
+src_install() {
+ # petsc install structure is very different from
+ # installing headers to /usr/include/petsc and lib to /usr/lib
+ # it also installs many unneeded executables and scripts
+ # so manual install is easier than cleanup after "emake install"
+ insinto /usr/include/${PN}
+ doins include/*.h*
+ insinto /usr/include/${PN}/${PETSC_ARCH}/include
+ doins ${PETSC_ARCH}/include/*
+ if use fortran; then
+ insinto /usr/include/${PN}/finclude
+ doins -r include/${PN}/finclude/*
+ fi
+ if ! use mpi ; then
+ insinto /usr/include/${PN}/mpiuni
+ doins include/mpiuni/*.h
+ fi
+ insinto /usr/include/${PN}/conf
+ doins lib/${PN}/conf/{variables,rules,test}
+ insinto /usr/include/${PN}/${PETSC_ARCH}/conf
+ doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
+ insinto /usr/include/${PN}/private
+ doins include/${PN}/private/*.h
+
+ # fix configuration files: replace "${S}" by installed location
+ sed -i \
+ -e "s:"${S}"::g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
+ -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
+ -e "s:usr/lib:usr/$(get_libdir):g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
+
+ # add information about installation directory and
+ # PETSC_ARCH to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_ARCH=${PETSC_ARCH}
+ PETSC_DIR=${EPREFIX}/usr/include/${PN}
+ EOF
+ doenvd 99petsc
+
+ dolib.so ${PETSC_ARCH}/lib/*.so
+ dolib.so ${PETSC_ARCH}/lib/*.so.*
+
+ if use doc ; then
+ einfo "installing documentation (this could take a while)"
+ dodoc docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+}
+
+pkg_postinst() {
+ elog "The petsc ebuild is still under development."
+ elog "Help us improve the ebuild in:"
+ elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2015-09-01 10:26 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2015-09-01 10:26 UTC (permalink / raw
To: gentoo-commits
commit: c0b79811015288696f74c4c55694e6c3c1b95413
Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Tue Sep 1 08:16:12 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Sep 1 08:16:12 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c0b79811
sci-mathematics/petsc: Add subslot for fftw dependency
Package-Manager: portage-2.2.20.1
sci-mathematics/petsc/ChangeLog | 4 ++++
sci-mathematics/petsc/petsc-3.5.3.ebuild | 2 +-
sci-mathematics/petsc/petsc-3.6.0.ebuild | 2 +-
3 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index ede47d8..861d62b 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 01 Sep 2015; Marius Brehler <marbre@linux.sungazer.de> petsc-3.5.3.ebuild,
+ petsc-3.6.0.ebuild:
+ sci-mathematics/petsc: Add subslot for fftw dependency
+
23 Jun 2015; Matthias Maier <tamiko@gentoo.org> petsc-3.5.3.ebuild,
petsc-3.6.0.ebuild:
sci-mathematics/petsc: Avoid a sandbox violation, bug #548498
diff --git a/sci-mathematics/petsc/petsc-3.5.3.ebuild b/sci-mathematics/petsc/petsc-3.5.3.ebuild
index 44076f7..a5d339b 100644
--- a/sci-mathematics/petsc/petsc-3.5.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.3.ebuild
@@ -38,7 +38,7 @@ RDEPEND="
virtual/lapack
afterimage? ( media-libs/libafterimage )
boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw[mpi?] )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
hdf5? ( sci-libs/hdf5[mpi?] )
hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
mpi? ( virtual/mpi[cxx?,fortran?] )
diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild
index 6a5ce37..874eca0 100644
--- a/sci-mathematics/petsc/petsc-3.6.0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.6.0.ebuild
@@ -38,7 +38,7 @@ RDEPEND="
virtual/lapack
afterimage? ( media-libs/libafterimage )
boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw[mpi?] )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
hdf5? ( sci-libs/hdf5[mpi?] )
hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
mpi? ( virtual/mpi[cxx?,fortran?] )
^ permalink raw reply related [flat|nested] 59+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2015-06-24 9:51 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2015-06-24 9:51 UTC (permalink / raw
To: gentoo-commits
commit: 8b2c35ac92ac6644a09d897c1616ed3753396bff
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 23 18:03:38 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 23 18:03:38 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b2c35ac
sci-mathematics/petsc: Avoid a sandbox violation, bug #548498
Package-Manager: portage-2.2.18
sci-mathematics/petsc/ChangeLog | 4 ++++
sci-mathematics/petsc/petsc-3.5.3.ebuild | 7 +++++++
sci-mathematics/petsc/petsc-3.6.0.ebuild | 7 +++++++
3 files changed, 18 insertions(+)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index 858b694..1f8dcbb 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 23 Jun 2015; Matthias Maier <tamiko@gentoo.org> petsc-3.5.3.ebuild,
+ petsc-3.6.0.ebuild:
+ sci-mathematics/petsc: Avoid a sandbox violation, bug #548498
+
*petsc-3.6.0 (23 Jun 2015)
23 Jun 2015; Matthias Maier <tamiko@gentoo.org>
diff --git a/sci-mathematics/petsc/petsc-3.5.3.ebuild b/sci-mathematics/petsc/petsc-3.5.3.ebuild
index 09e5bfb..c7f0269 100644
--- a/sci-mathematics/petsc/petsc-3.5.3.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.3.ebuild
@@ -74,6 +74,13 @@ src_prepare() {
}
src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
petsc_enable() {
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild
index 6c96de3..d7ee394 100644
--- a/sci-mathematics/petsc/petsc-3.6.0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.6.0.ebuild
@@ -77,6 +77,13 @@ src_prepare() {
}
src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
petsc_enable() {
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2014-09-16 17:01 Christoph Junghans
0 siblings, 0 replies; 59+ messages in thread
From: Christoph Junghans @ 2014-09-16 17:01 UTC (permalink / raw
To: gentoo-commits
commit: e677c77edead491f921c2d24a7935ee6be6b5af0
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 16:55:59 2014 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 16:55:59 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e677c77e
remove whitespace
Package-Manager: portage-2.2.8-r1
---
sci-mathematics/petsc/ChangeLog | 4 +++-
sci-mathematics/petsc/petsc-3.4.2.ebuild | 2 +-
2 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index 7e45651..a3aabff 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> petsc-3.4.2.ebuild:
+ remove whitespace
+
01 Sep 2014; Jauhien Piatlicki <jauhien@gentoo.org> petsc-3.4.2.ebuild,
petsc-3.5.1.ebuild:
fix INCLUDE dirs in petscvariables
@@ -129,4 +132,3 @@
13 Sep 2010; Thomas Kahle <tom111@gmx.de> +petsc-3.1_p4.ebuild,
+files/fix-configure-pic.patch, +files/fix-mpiuni.patch, +metadata.xml:
New package. Ebuild by J. M. Gottfried. Corresponding bug is 53386.
-
diff --git a/sci-mathematics/petsc/petsc-3.4.2.ebuild b/sci-mathematics/petsc/petsc-3.4.2.ebuild
index b0c767a..604da45 100644
--- a/sci-mathematics/petsc/petsc-3.4.2.ebuild
+++ b/sci-mathematics/petsc/petsc-3.4.2.ebuild
@@ -172,7 +172,7 @@ src_configure() {
/usr/include \
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
--with-imagemagick=0 \
- --with-python=0 \
+ --with-python=0
# not yet tested:
# python bindings, netcdf
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2014-09-01 19:47 Jauhien Piatlicki
0 siblings, 0 replies; 59+ messages in thread
From: Jauhien Piatlicki @ 2014-09-01 19:47 UTC (permalink / raw
To: gentoo-commits
commit: f6dac7e5f0c578330f3994c83afc702c78d785a4
Author: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 1 17:53:43 2014 +0000
Commit: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
CommitDate: Mon Sep 1 17:53:43 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f6dac7e5
sci-mathematics/petsc: fix INCLUDE dirs in petscvariables
---
sci-mathematics/petsc/ChangeLog | 4 ++++
sci-mathematics/petsc/petsc-3.4.2.ebuild | 4 ++++
sci-mathematics/petsc/petsc-3.5.1.ebuild | 4 ++++
3 files changed, 12 insertions(+)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index a0fd4a7..7e45651 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -4,6 +4,10 @@
01 Sep 2014; Jauhien Piatlicki <jauhien@gentoo.org> petsc-3.4.2.ebuild,
petsc-3.5.1.ebuild:
+ fix INCLUDE dirs in petscvariables
+
+ 01 Sep 2014; Jauhien Piatlicki <jauhien@gentoo.org> petsc-3.4.2.ebuild,
+ petsc-3.5.1.ebuild:
make configure work on systems with default python3 interpreter
06 Jan 2014; Justin Lecher <jlec@gentoo.org> -petsc-3.3_p5.ebuild,
diff --git a/sci-mathematics/petsc/petsc-3.4.2.ebuild b/sci-mathematics/petsc/petsc-3.4.2.ebuild
index 065c95d..b0c767a 100644
--- a/sci-mathematics/petsc/petsc-3.4.2.ebuild
+++ b/sci-mathematics/petsc/petsc-3.4.2.ebuild
@@ -216,6 +216,10 @@ src_install() {
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
sed -i \
+ -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
+ -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
-e "s:usr/lib:usr/$(get_libdir):g" \
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
diff --git a/sci-mathematics/petsc/petsc-3.5.1.ebuild b/sci-mathematics/petsc/petsc-3.5.1.ebuild
index 147c36b..3d01eee 100644
--- a/sci-mathematics/petsc/petsc-3.5.1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.1.ebuild
@@ -211,6 +211,10 @@ src_install() {
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
sed -i \
+ -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
+ -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
+ "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
+ sed -i \
-e "s:usr/lib:usr/$(get_libdir):g" \
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2014-09-01 13:06 Jauhien Piatlicki
0 siblings, 0 replies; 59+ messages in thread
From: Jauhien Piatlicki @ 2014-09-01 13:06 UTC (permalink / raw
To: gentoo-commits
commit: da574aba923a790a2af6c043f5a3f94a0659bf53
Author: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 1 13:05:37 2014 +0000
Commit: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
CommitDate: Mon Sep 1 13:05:37 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=da574aba
sci-mathematics/petsc: make configure work on systems with default python3 interpreter
---
sci-mathematics/petsc/ChangeLog | 4 ++++
sci-mathematics/petsc/petsc-3.4.2.ebuild | 6 +++++-
sci-mathematics/petsc/petsc-3.5.1.ebuild | 6 +++++-
3 files changed, 14 insertions(+), 2 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index f963803..a0fd4a7 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 01 Sep 2014; Jauhien Piatlicki <jauhien@gentoo.org> petsc-3.4.2.ebuild,
+ petsc-3.5.1.ebuild:
+ make configure work on systems with default python3 interpreter
+
06 Jan 2014; Justin Lecher <jlec@gentoo.org> -petsc-3.3_p5.ebuild,
petsc-3.4.2.ebuild, metadata.xml:
Punt base.eclass
diff --git a/sci-mathematics/petsc/petsc-3.4.2.ebuild b/sci-mathematics/petsc/petsc-3.4.2.ebuild
index 5263263..065c95d 100644
--- a/sci-mathematics/petsc/petsc-3.4.2.ebuild
+++ b/sci-mathematics/petsc/petsc-3.4.2.ebuild
@@ -4,7 +4,9 @@
EAPI=5
-inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
MY_P="${PN}-$(replace_version_separator _ -)"
@@ -49,6 +51,7 @@ RDEPEND="
# imagemagick? ( media-gfx/imagemagick )
DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
virtual/pkgconfig
dev-util/cmake
"
@@ -66,6 +69,7 @@ S="${WORKDIR}/${MY_P}"
src_prepare() {
epatch "${FILESDIR}"/${P%_*}-disable-rpath.patch
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
}
src_configure() {
diff --git a/sci-mathematics/petsc/petsc-3.5.1.ebuild b/sci-mathematics/petsc/petsc-3.5.1.ebuild
index bacf55e..147c36b 100644
--- a/sci-mathematics/petsc/petsc-3.5.1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.1.ebuild
@@ -4,7 +4,9 @@
EAPI=5
-inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
MY_P="${PN}-$(replace_version_separator _ -)"
@@ -50,6 +52,7 @@ RDEPEND="
# imagemagick? ( media-gfx/imagemagick )
DEPEND="${RDEPEND}
+ ${PYTHON_DEPS}
virtual/pkgconfig
dev-util/cmake
"
@@ -67,6 +70,7 @@ S="${WORKDIR}/${MY_P}"
src_prepare() {
epatch "${FILESDIR}"/${P%_*}-disable-rpath.patch
+ sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
}
src_configure() {
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2014-08-10 8:05 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2014-08-10 8:05 UTC (permalink / raw
To: gentoo-commits
commit: 9d554536bddca6aa5d766020a3513ec16bc5000b
Author: layman <layman <AT> localhost>
AuthorDate: Sun Aug 3 08:55:23 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Aug 3 08:55:23 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9d554536
Install the .f90 fortran includes.
---
sci-mathematics/petsc/petsc-3.5.1.ebuild | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.5.1.ebuild b/sci-mathematics/petsc/petsc-3.5.1.ebuild
index e4ea76a..bacf55e 100644
--- a/sci-mathematics/petsc/petsc-3.5.1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.5.1.ebuild
@@ -165,7 +165,7 @@ src_configure() {
--with-imagemagick=0 \
--with-python=0 \
$(petsc_with boost) \
- $(petsc_with fftw) \
+ $(petsc_with fftw)
# not yet tested:
# python bindings, netcdf, fftw
@@ -188,7 +188,7 @@ src_install() {
doins ${PETSC_ARCH}/include/*
if use fortran; then
insinto /usr/include/${PN}/finclude
- doins include/finclude/*.h
+ doins -r include/finclude/*
fi
if ! use mpi ; then
insinto /usr/include/${PN}/mpiuni
@@ -219,6 +219,7 @@ src_install() {
doenvd 99petsc
dolib.so ${PETSC_ARCH}/lib/*.so
+ dolib.so ${PETSC_ARCH}/lib/*.so.*
if use doc ; then
einfo "installing documentation (this could take a while)"
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2014-01-06 18:33 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2014-01-06 18:33 UTC (permalink / raw
To: gentoo-commits
commit: 9c6e622f1fef336d50457597c17671f0d3065e70
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 6 17:59:53 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 6 17:59:53 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9c6e622f
sci-mathematics/petsc: Punt base.eclass
Package-Manager: portage-2.2.8
---
sci-mathematics/petsc/ChangeLog | 6 +-
sci-mathematics/petsc/metadata.xml | 2 +
sci-mathematics/petsc/petsc-3.3_p5.ebuild | 223 ------------------------------
sci-mathematics/petsc/petsc-3.4.2.ebuild | 22 +--
4 files changed, 18 insertions(+), 235 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index d2c6a94..f963803 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-mathematics/petsc
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> -petsc-3.3_p5.ebuild,
+ petsc-3.4.2.ebuild, metadata.xml:
+ Punt base.eclass
+
22 Feb 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop unused local USE-description: 'metis'
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index eb753da..a22c6dc 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -8,6 +8,8 @@
<flag name="complex-scalars">Make scalars complex</flag>
<flag name="sparse">Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization</flag>
<flag name="superlu">Use superlu (sci-libs/superlu) for preconditioning</flag>
+ <flag name="mumps">PLEASE FIX MY DESCRIPTION</flag>
+ <flag name="scotch">PLEASE FIX MY DESCRIPTION</flag>
<!-- Disabled:
<flag name="boost">Use boost (dev-libs/boost)</flag>
-->
diff --git a/sci-mathematics/petsc/petsc-3.3_p5.ebuild b/sci-mathematics/petsc/petsc-3.3_p5.ebuild
deleted file mode 100644
index e0a1340..0000000
--- a/sci-mathematics/petsc/petsc-3.3_p5.ebuild
+++ /dev/null
@@ -1,223 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=4
-
-inherit base flag-o-matic fortran-2 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage complex-scalars cxx debug doc
- fortran hdf5 hypre mpi sparse superlu threads X"
-# Failed: boost imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- hypre? ( cxx mpi )
- hdf5? ( mpi )
- afterimage? ( X )
- ^^ ( hypre superlu )
-"
-# imagemagick? ( X )
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( sci-libs/superlu )
- X? ( x11-libs/libX11 )
-"
-# boost? ( dev-libs/boost )
-# metis? ( sci-libs/parmetis )
-# imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- dev-util/cmake
-"
-# cmake is used for parralel building
-# in some configuration setups, legacy build is used (slow)
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${P%_*}-configure-pic.patch
- "${FILESDIR}"/${P%_*}-disable-rpath.patch
- "${FILESDIR}"/${P%_*}-fix-complex-threads.patch
-)
-
-src_configure() {
- # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
- petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
- }
- # add external library:
- # petsc_with use_flag libname libdir
- # petsc_with use_flag libname include linking_libs
- petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
- }
-
- # select between configure options depending on use flag
- petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
- }
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on Cxx builds is enabled if possible
- # i.e. when not using complex scalars
- # (no complex type for both available at the same time)
-
- if use threads; then
- ewarn "Threads support may be incomplete on $PN-3.3 release and is not officially supported."
- ewarn "Upstream recommends not to enable threads support for production runs."
- fi
-
- # run petsc configure script
- econf \
- scrollOutput=1 \
- CFLAGS="${CFLAGS}" \
- CXXFLAGS="${CXXFLAGS}" \
- LDFLAGS="${LDFLAGS}" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_enable threads pthread) \
- $(petsc_enable threads pthreadclasses) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake=cmake \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(petsc_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(petsc_with sparse cholmod) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(petsc_with X x) \
- $(petsc_with X x11) \
- --with-imagemagick=0 \
- --with-python=0 \
- --with-scotch=0
-
-# not yet tested:
-# python bindings, sctotch, netcdf, scalapack
-# non-working:
-# fftw: no mpi-implementaion available in gentoo
-
-# failed dependencies, perhaps fixed in upstream soon:
-# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-# $(petsc_with boost) \
-# $(petsc_with imagemagick imagemagick \
-# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-}
-
-src_install() {
- # petsc install structure is very different from
- # installing headers to /usr/include/petsc and lib to /usr/lib
- # it also installs many unneeded executables and scripts
- # so manual install is easier than cleanup after "emake install"
- insinto /usr/include/${PN}
- doins include/*.h*
- insinto /usr/include/${PN}/${PETSC_ARCH}/include
- doins ${PETSC_ARCH}/include/*
- if use fortran; then
- insinto /usr/include/${PN}/finclude
- doins include/finclude/*.h
- fi
- if ! use mpi ; then
- insinto /usr/include/${PN}/mpiuni
- doins include/mpiuni/*.h
- fi
- insinto /usr/include/${PN}/conf
- doins conf/{variables,rules,test}
- insinto /usr/include/${PN}/${PETSC_ARCH}/conf
- doins ${PETSC_ARCH}/conf/{petscrules,petscvariables,RDict.db}
- insinto /usr/include/${PN}/petsc-private
- doins include/petsc-private/*.h
-
- # fix configuration files: replace ${S} by installed location
- sed -i \
- -e "s:${S}::g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
- sed -i \
- -e "s:usr/lib:usr/$(get_libdir):g" \
- "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
- # add information about installation directory and
- # PETSC_ARCH to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_ARCH=${PETSC_ARCH}
- PETSC_DIR=${EPREFIX}/usr/include/${PN}
- EOF
- doenvd 99petsc
-
- dolib.so ${PETSC_ARCH}/lib/*.so
-
- if use doc ; then
- einfo "installing documentation (this could take a while)"
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
-}
diff --git a/sci-mathematics/petsc/petsc-3.4.2.ebuild b/sci-mathematics/petsc/petsc-3.4.2.ebuild
index 1d8462f..5263263 100644
--- a/sci-mathematics/petsc/petsc-3.4.2.ebuild
+++ b/sci-mathematics/petsc/petsc-3.4.2.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
-inherit base flag-o-matic fortran-2 toolchain-funcs versionator
+inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator
MY_P="${PN}-$(replace_version_separator _ -)"
@@ -64,9 +64,9 @@ MAKEOPTS="${MAKEOPTS} -j1"
S="${WORKDIR}/${MY_P}"
-PATCHES=(
- "${FILESDIR}"/${P%_*}-disable-rpath.patch
-)
+src_prepare() {
+ epatch "${FILESDIR}"/${P%_*}-disable-rpath.patch
+}
src_configure() {
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
@@ -160,12 +160,12 @@ src_configure() {
$(petsc_with X x) \
$(petsc_with X x11) \
$(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ /usr/include/scotch \
+ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
$(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
+ /usr/include/scalapack -lscalapack) \
$(petsc_with mumps mumps \
- /usr/include \
+ /usr/include \
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
--with-imagemagick=0 \
--with-python=0 \
@@ -206,9 +206,9 @@ src_install() {
insinto /usr/include/${PN}/petsc-private
doins include/petsc-private/*.h
- # fix configuration files: replace ${S} by installed location
+ # fix configuration files: replace "${S}" by installed location
sed -i \
- -e "s:${S}::g" \
+ -e "s:"${S}"::g" \
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
sed -i \
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2013-02-22 10:15 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2013-02-22 10:15 UTC (permalink / raw
To: gentoo-commits
commit: acaa6ae3288524bbbcef01b9bb7ef682add42f70
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Feb 22 09:31:41 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Feb 22 09:31:41 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=acaa6ae3
sci-mathematics/petsc: Drop unused local USE-description: 'metis'
Package-Manager: portage-2.2.0_alpha163
---
sci-mathematics/petsc/ChangeLog | 3 +++
sci-mathematics/petsc/metadata.xml | 1 -
2 files changed, 3 insertions(+), 1 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index fc4e7d4..d2c6a94 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 22 Feb 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
+ Drop unused local USE-description: 'metis'
+
22 Feb 2013; Justin Lecher <jlec@gentoo.org> -petsc-3.1_p8-r1.ebuild,
-files/petsc-3.1_p8-configure-pic.patch,
-files/petsc-3.1_p8-disable-rpath.patch, -petsc-3.2_p7.ebuild,
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index 2e5b489..eb753da 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -5,7 +5,6 @@
<use>
<flag name="afterimage">Use Afterstep image library (media-libs/libafterimage)</flag>
<flag name="hypre">Use HYPRE (sci-mathematics/hypre) and for preconditioning</flag>
- <flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
<flag name="complex-scalars">Make scalars complex</flag>
<flag name="sparse">Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization</flag>
<flag name="superlu">Use superlu (sci-libs/superlu) for preconditioning</flag>
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2013-02-10 22:11 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2013-02-10 22:11 UTC (permalink / raw
To: gentoo-commits
commit: 0e5df6dfda0746deb6cda2caad33db7318c2bc80
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sun Feb 10 22:09:58 2013 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sun Feb 10 22:09:58 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0e5df6df
added warning about petsc threads support
and swithed to scrolling config output which does not
scramble tty output (but is very verbose)
---
sci-mathematics/petsc/petsc-3.3_p5.ebuild | 14 +++++++++-----
1 files changed, 9 insertions(+), 5 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.3_p5.ebuild b/sci-mathematics/petsc/petsc-3.3_p5.ebuild
index 6f0acd7..81de267 100644
--- a/sci-mathematics/petsc/petsc-3.3_p5.ebuild
+++ b/sci-mathematics/petsc/petsc-3.3_p5.ebuild
@@ -106,21 +106,25 @@ src_configure() {
filter-flags -O*
fi
- # enable C Support on Cxx build if possible
- local petscCSupp
- if use cxx && ! use complex-scalars; then
- petscCSupp="--with-c-support=1"
+ # C Support on Cxx builds is enabled if possible
+ # i.e. when not using complex scalars
+ # (no complex type for both available at the same time)
+
+ if use threads; then
+ ewarn "Threads support may be incomplete on $PN-3.3 release and is not officially supported."
+ ewarn "Upstream recommends not to enable threads support for production runs."
fi
# run petsc configure script
econf \
+ scrollOutput=1 \
CFLAGS="${CFLAGS}" \
CXXFLAGS="${CXXFLAGS}" \
LDFLAGS="${LDFLAGS}" \
--with-shared-libraries \
--with-single-library \
--with-clanguage=${mylang} \
- $petscCSupp \
+ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
--with-petsc-arch=${PETSC_ARCH} \
--with-precision=double \
--with-gnu-compilers \
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2013-01-07 22:16 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2013-01-07 22:16 UTC (permalink / raw
To: gentoo-commits
commit: a2efbd398f8931cfe4e8ba27abb6c1318e920ba8
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Mon Jan 7 22:15:52 2013 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Mon Jan 7 22:15:52 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a2efbd39
fixed repman issues
also adding missing digests
---
sci-mathematics/petsc/petsc-3.2_p7.ebuild | 4 ++--
sci-mathematics/petsc/petsc-3.3_p5.ebuild | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.2_p7.ebuild b/sci-mathematics/petsc/petsc-3.2_p7.ebuild
index 5c8f5b5..6bd5bc4 100644
--- a/sci-mathematics/petsc/petsc-3.2_p7.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p7.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -46,8 +46,8 @@ RDEPEND="
DEPEND="${RDEPEND}
virtual/fortran
+ virtual/pkgconfig
dev-lang/python
- dev-util/pkgconfig
dev-util/cmake
"
# cmake is used for parralel building
diff --git a/sci-mathematics/petsc/petsc-3.3_p5.ebuild b/sci-mathematics/petsc/petsc-3.3_p5.ebuild
index de5dd8f..42ed2a2 100644
--- a/sci-mathematics/petsc/petsc-3.3_p5.ebuild
+++ b/sci-mathematics/petsc/petsc-3.3_p5.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -46,8 +46,8 @@ RDEPEND="
DEPEND="${RDEPEND}
virtual/fortran
+ virtual/pkgconfig
dev-lang/python
- dev-util/pkgconfig
dev-util/cmake
"
# cmake is used for parralel building
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-10-05 14:09 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-10-05 14:09 UTC (permalink / raw
To: gentoo-commits
commit: ea745cfc2f1d71cb5a3be4d2462a6e26ef20f926
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Fri Oct 5 14:09:09 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Fri Oct 5 14:09:09 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ea745cfc
fix to build petsc in Gentoo Prefix (thanks to Matthias Maier)
---
sci-mathematics/petsc/petsc-3.3_p1.ebuild | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.3_p1.ebuild b/sci-mathematics/petsc/petsc-3.3_p1.ebuild
index 36e2d7a..0490a56 100644
--- a/sci-mathematics/petsc/petsc-3.3_p1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.3_p1.ebuild
@@ -74,7 +74,7 @@ src_configure() {
if use ${1}; then
myuse="--with-${p}=1"
if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${3}"
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
shift 3
myuse="${myuse} --with-${p}-lib=$@"
else
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-06-09 6:35 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-06-09 6:35 UTC (permalink / raw
To: gentoo-commits
commit: 3d7bcfb4cef28dac29166f9c87b464c5b3845d5e
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sat Jun 9 06:34:43 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sat Jun 9 06:34:43 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3d7bcfb4
added missing private headers
folder renamed from 3.2->3.3:
private -> petsc-private
---
sci-mathematics/petsc/petsc-3.3_p0.ebuild | 2 ++
1 files changed, 2 insertions(+), 0 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.3_p0.ebuild b/sci-mathematics/petsc/petsc-3.3_p0.ebuild
index 285fe6b..defd77c 100644
--- a/sci-mathematics/petsc/petsc-3.3_p0.ebuild
+++ b/sci-mathematics/petsc/petsc-3.3_p0.ebuild
@@ -179,6 +179,8 @@ src_install() {
doins conf/{variables,rules,test}
insinto /usr/include/${PN}/${PETSC_ARCH}/conf
doins ${PETSC_ARCH}/conf/{petscrules,petscvariables,RDict.db}
+ insinto /usr/include/${PN}/petsc-private
+ doins include/petsc-private/*.h
# fix configuration files: replace ${S} by installed location
sed -i \
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-05-23 19:56 Kacper Kowalik
0 siblings, 0 replies; 59+ messages in thread
From: Kacper Kowalik @ 2012-05-23 19:56 UTC (permalink / raw
To: gentoo-commits
commit: 2325fe7e6c7faa3348721641369484424de39440
Author: Kacper Kowalik (Xarthisius) <xarthisius <AT> gentoo <DOT> org>
AuthorDate: Wed May 23 19:52:47 2012 +0000
Commit: Kacper Kowalik <xarthisius <AT> gentoo <DOT> org>
CommitDate: Wed May 23 19:52:47 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2325fe7e
[sci-mathematics/petsc] add eutils.eclass for epatch
---
sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
index 818cff1..b5cc3ce 100644
--- a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
@@ -4,7 +4,7 @@
EAPI=3
-inherit flag-o-matic fortran-2 toolchain-funcs
+inherit flag-o-matic fortran-2 toolchain-funcs eutils
MY_P="${PN}-${PV/_/-}"
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-23 18:33 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-23 18:33 UTC (permalink / raw
To: gentoo-commits
commit: 73a230a45861be10fb5c4eeb6eafc5f482899856
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Fri Mar 23 18:32:41 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Fri Mar 23 18:32:41 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=73a230a4
using PATCHES variable instead of epatch
---
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 17 ++++++++---------
1 files changed, 8 insertions(+), 9 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index a3b11c4..a0b84e0 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -4,7 +4,7 @@
EAPI=4
-inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator
+inherit base flag-o-matic fortran-2 toolchain-funcs versionator
MY_P="${PN}-$(replace_version_separator _ -)"
@@ -55,14 +55,13 @@ DEPEND="${RDEPEND}
S="${WORKDIR}/${MY_P}"
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-configure-pic.patch \
- "${FILESDIR}"/${P}-disable-env-warnings.patch \
- "${FILESDIR}"/${P}-disable-rpath.patch \
- "${FILESDIR}"/${P}-fix-xops.patch \
- "${FILESDIR}"/${P}-fix-afterimage.patch
-}
+PATCHES=(
+ "${FILESDIR}"/${P}-configure-pic.patch
+ "${FILESDIR}"/${P}-disable-env-warnings.patch
+ "${FILESDIR}"/${P}-disable-rpath.patch
+ "${FILESDIR}"/${P}-fix-xops.patch
+ "${FILESDIR}"/${P}-fix-afterimage.patch
+)
src_configure() {
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-06 23:09 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-06 23:09 UTC (permalink / raw
To: gentoo-commits
commit: f7f2fd1f78ce27b03911c93c56ca6d56c1041225
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Tue Mar 6 23:05:16 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Tue Mar 6 23:05:16 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f7f2fd1f
disabled imagemagick, fixed lib configuring
---
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 29 +++++++++++++++++++----------
1 files changed, 19 insertions(+), 10 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index b1ea99f..a3b11c4 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -16,8 +16,8 @@ LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE="afterimage complex-scalars cxx debug doc
- fortran hdf5 hypre imagemagick metis mpi sparse superlu threads X"
-# Failed: boost
+ fortran hdf5 hypre metis mpi sparse superlu threads X"
+# Failed: boost imagemagick
# hypre and superlu curretly exclude each other due to missing linking to hypre
# if both are enabled
@@ -25,9 +25,9 @@ REQUIRED_USE="
hypre? ( cxx mpi )
hdf5? ( mpi )
afterimage? ( X )
- imagemagick? ( X )
^^ ( hypre superlu )
"
+# imagemagick? ( X )
RDEPEND="
virtual/blas
@@ -35,7 +35,6 @@ RDEPEND="
afterimage? ( media-libs/libafterimage )
hdf5? ( sci-libs/hdf5[mpi?] )
hypre? ( sci-libs/hypre[mpi?] )
- imagemagick? ( media-gfx/imagemagick )
metis? ( sci-libs/parmetis )
mpi? ( virtual/mpi[cxx?,fortran?] )
sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
@@ -43,6 +42,7 @@ RDEPEND="
X? ( x11-libs/libX11 )
"
# boost? ( dev-libs/boost )
+# imagemagick? ( media-gfx/imagemagick )
DEPEND="${RDEPEND}
virtual/fortran
@@ -79,7 +79,7 @@ src_configure() {
if [[ $# -ge 4 ]]; then
myuse="${myuse} --with-${p}-include=${3}"
shift 3
- myuse="${myuse} --with-${p}-lib=\"$@\""
+ myuse="${myuse} --with-${p}-lib=$@"
else
myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
fi
@@ -135,21 +135,30 @@ src_configure() {
--with-windows-graphics=0 \
--with-matlab=0 \
--with-cmake=cmake \
- $(petsc_with afterimage afterimage /usr/include/libAfterImage -lAfterImage) \
+ $(petsc_with afterimage afterimage \
+ /usr/include/libAfterImage -lAfterImage) \
$(petsc_with hdf5) \
- $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \
- $(petsc_with imagemagick imagemagick /usr/include/ImageMagick $(pkg-config --libs MagickCore)) \
+ $(petsc_with hypre hypre \
+ /usr/include/hypre -lHYPRE) \
$(petsc_with metis parmetis) \
$(petsc_with sparse cholmod) \
- $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \
+ $(petsc_with superlu superlu \
+ /usr/include/superlu -lsuperlu) \
$(petsc_with X x) \
$(petsc_with X x11) \
+ --with-imagemagick=0 \
--with-python=0 \
--with-scotch=0
- # not yet tested: python bindings, sctotch support
+
+# not yet tested:
+# python bindings, sctotch, netcdf, scalapack
+# non-working:
+# fftw: no mpi-implementaion available in gentoo
# failed dependencies, perhaps fixed in upstream soon:
# $(petsc_with boost) \
+# $(petsc_with imagemagick imagemagick \
+# /usr/include/ImageMagick $(pkg-config --libs MagickCore)) \
}
src_install() {
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-06 22:15 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-06 22:15 UTC (permalink / raw
To: gentoo-commits
commit: d7f3beeed83c0f03321b18d832ab51406b2e6643
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Tue Mar 6 22:15:51 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Tue Mar 6 22:15:51 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d7f3beee
moved comments out of the argument list
---
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 13 ++++++++-----
1 files changed, 8 insertions(+), 5 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index 51a3559..b1ea99f 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -48,7 +48,10 @@ DEPEND="${RDEPEND}
virtual/fortran
dev-lang/python
dev-util/pkgconfig
+ dev-util/cmake
"
+# cmake is used for parralel building
+# in some configuration setups, legacy build is used (slow)
S="${WORKDIR}/${MY_P}"
@@ -120,7 +123,6 @@ src_configure() {
--with-gnu-compilers \
--with-blas-lapack-lib="$(pkg-config --libs lapack)" \
$(petsc_enable debug debugging) \
- $(petsc_with imagemagick imagemagick /usr/include/ImageMagick $(pkg-config --libs MagickCore)) \
$(petsc_enable mpi) \
$(petsc_select mpi cc mpicc $(tc-getCC)) \
$(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
@@ -132,17 +134,19 @@ src_configure() {
$(petsc_select complex-scalars scalar-type complex real) \
--with-windows-graphics=0 \
--with-matlab=0 \
- --with-python=0 \ # why not?
- --with-cmake=cmake \ # what for?
+ --with-cmake=cmake \
$(petsc_with afterimage afterimage /usr/include/libAfterImage -lAfterImage) \
$(petsc_with hdf5) \
$(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \
+ $(petsc_with imagemagick imagemagick /usr/include/ImageMagick $(pkg-config --libs MagickCore)) \
$(petsc_with metis parmetis) \
$(petsc_with sparse cholmod) \
$(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \
$(petsc_with X x) \
$(petsc_with X x11) \
- --with-scotch=0 # why not?
+ --with-python=0 \
+ --with-scotch=0
+ # not yet tested: python bindings, sctotch support
# failed dependencies, perhaps fixed in upstream soon:
# $(petsc_with boost) \
@@ -177,7 +181,6 @@ src_install() {
-e "s:usr/lib:usr/$(get_libdir):g" \
"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
# add information about installation directory and
# PETSC_ARCH to environmental variables
cat >> 99petsc <<- EOF
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-05 16:11 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-05 16:11 UTC (permalink / raw
To: gentoo-commits
commit: a4f4b83914fec669a8c3684551a8a5b2bb721a12
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Mon Mar 5 16:10:46 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Mon Mar 5 16:10:46 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a4f4b839
fix missing linking if hypre and superlu enabled
this is a workaround, perhaps this problem will be fixed in upstream
---
sci-mathematics/petsc/metadata.xml | 3 ++-
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 10 +++++++---
2 files changed, 9 insertions(+), 4 deletions(-)
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index 10bb79f..f0f9f18 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -4,10 +4,11 @@
<herd>sci-mathematics</herd>
<use>
<flag name="afterimage">Use Afterstep image library (media-libs/libafterimage)</flag>
- <flag name="hypre">Use HYPRE (sci-mathematics/hypre) and superlu (sci-libs/superlu) for preconditioning</flag>
+ <flag name="hypre">Use HYPRE (sci-mathematics/hypre) and for preconditioning</flag>
<flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
<flag name="complex-scalars">Make scalars complex</flag>
<flag name="sparse">Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization</flag>
+ <flag name="superlu">Use superlu (sci-libs/superlu) for preconditioning</flag>
<!-- Disabled:
<flag name="boost">Use boost (dev-libs/boost)</flag>
-->
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index 23dc7ca..5426f69 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -16,13 +16,16 @@ LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE="afterimage complex-scalars cxx debug doc \
- fortran hdf5 hypre metis mpi sparse threads X"
+ fortran hdf5 hypre metis mpi sparse superlu threads X"
# Failed: boost imagemagick
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
REQUIRED_USE="
hypre? ( cxx mpi )
hdf5? ( mpi )
afterimage? ( X )
+ ^^ ( hypre superlu )
"
# imagemagick? ( X )
@@ -30,11 +33,12 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
virtual/lapack
virtual/blas
- hypre? ( sci-libs/hypre sci-libs/superlu )
+ hypre? ( sci-libs/hypre )
metis? ( sci-libs/parmetis )
hdf5? ( sci-libs/hdf5 )
afterimage? ( media-libs/libafterimage )
sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
+ superlu? ( sci-libs/superlu )
"
# boost? ( dev-libs/boost )
# imagemagick? ( media-gfx/imagemagick )
@@ -128,9 +132,9 @@ src_configure(){
/usr/$(get_libdir)/libAfterImage.so /usr/include/libAfterImage) \
$(petsc_with hdf5) \
$(petsc_with hypre hypre /usr/$(get_libdir)/libHYPRE.so /usr/include/hypre) \
- $(petsc_with hypre superlu /usr/$(get_libdir)/libsuperlu.so /usr/include/superlu) \
$(petsc_with metis parmetis) \
$(petsc_with sparse cholmod) \
+ $(petsc_with superlu superlu /usr/$(get_libdir)/libsuperlu.so /usr/include/superlu) \
$(petsc_with X x) \
$(petsc_with X x11) \
--with-scotch=0
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-04 21:16 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-04 21:16 UTC (permalink / raw
To: gentoo-commits
commit: 4b1440543f9105301337cd671a6e7e563db64b73
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sun Mar 4 21:15:19 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sun Mar 4 21:15:19 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4b144054
added superlu on activated hypre flag
since superlu is in the hypre depencencies anyway.
Also switched to using the econf macro to have configure options
displayed during build.
---
sci-mathematics/petsc/metadata.xml | 4 ++--
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 13 ++++++-------
2 files changed, 8 insertions(+), 9 deletions(-)
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index 9bbff56..10bb79f 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -4,10 +4,10 @@
<herd>sci-mathematics</herd>
<use>
<flag name="afterimage">Use Afterstep image library (media-libs/libafterimage)</flag>
- <flag name="hypre">Use HYPRE (sci-mathematics/hypre) for preconditioning</flag>
+ <flag name="hypre">Use HYPRE (sci-mathematics/hypre) and superlu (sci-libs/superlu) for preconditioning</flag>
<flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
<flag name="complex-scalars">Make scalars complex</flag>
- <flag name="sparse">Use cholmod and suitesparse for sparse factorization</flag>
+ <flag name="sparse">Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization</flag>
<!-- Disabled:
<flag name="boost">Use boost (dev-libs/boost)</flag>
-->
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index 46a2344..23dc7ca 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -30,11 +30,11 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
virtual/lapack
virtual/blas
- hypre? ( sci-libs/hypre )
+ hypre? ( sci-libs/hypre sci-libs/superlu )
metis? ( sci-libs/parmetis )
hdf5? ( sci-libs/hdf5 )
afterimage? ( media-libs/libafterimage )
- sparse? ( sci-libs/suitesparse sci-libs/cholmod )
+ sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
"
# boost? ( dev-libs/boost )
# imagemagick? ( media-gfx/imagemagick )
@@ -98,8 +98,7 @@ src_configure(){
fi
# run petsc configure script
- ./configure \
- --prefix="${EPREFIX}/usr" \
+ econf \
CFLAGS="${CFLAGS}" \
CXXFLAGS="${CXXFLAGS}" \
LDFLAGS="${LDFLAGS}" \
@@ -129,14 +128,14 @@ src_configure(){
/usr/$(get_libdir)/libAfterImage.so /usr/include/libAfterImage) \
$(petsc_with hdf5) \
$(petsc_with hypre hypre /usr/$(get_libdir)/libHYPRE.so /usr/include/hypre) \
+ $(petsc_with hypre superlu /usr/$(get_libdir)/libsuperlu.so /usr/include/superlu) \
$(petsc_with metis parmetis) \
$(petsc_with sparse cholmod) \
$(petsc_with X x) \
$(petsc_with X x11) \
- --with-scotch=0 \
- ${EXTRA_ECONF} || die "configuration failed"
+ --with-scotch=0
-# failed dependencies, perhaps fixed in upstream:
+# failed dependencies, perhaps fixed in upstream soon:
# $(petsc_with boost) \
# $(petsc_with imagemagick imagemagick /usr/$(get_libdir)/libMagickCore.so /usr/include/ImageMagick) \
}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-04 15:19 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-04 15:19 UTC (permalink / raw
To: gentoo-commits
commit: c3a9f292a4891ba7ccdfae201e4c6d91f504ed27
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sun Mar 4 15:18:52 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sun Mar 4 15:18:52 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c3a9f292
got sparse flag working
---
sci-mathematics/petsc/metadata.xml | 2 +-
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 8 ++++----
2 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index dea22b9..9bbff56 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -7,9 +7,9 @@
<flag name="hypre">Use HYPRE (sci-mathematics/hypre) for preconditioning</flag>
<flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
<flag name="complex-scalars">Make scalars complex</flag>
+ <flag name="sparse">Use cholmod and suitesparse for sparse factorization</flag>
<!-- Disabled:
<flag name="boost">Use boost (dev-libs/boost)</flag>
- <flag name="sparse">Use cholmod (sci-libs/cholmod) for sparse factorization</flag>
-->
</use>
</pkgmetadata>
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index f91d6de..46a2344 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -16,8 +16,8 @@ LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE="afterimage complex-scalars cxx debug doc \
- fortran hdf5 hypre metis mpi threads X"
-# Failed: boost imagemagick sparse
+ fortran hdf5 hypre metis mpi sparse threads X"
+# Failed: boost imagemagick
REQUIRED_USE="
hypre? ( cxx mpi )
@@ -34,10 +34,10 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
metis? ( sci-libs/parmetis )
hdf5? ( sci-libs/hdf5 )
afterimage? ( media-libs/libafterimage )
+ sparse? ( sci-libs/suitesparse sci-libs/cholmod )
"
# boost? ( dev-libs/boost )
# imagemagick? ( media-gfx/imagemagick )
-# sparse? ( sci-libs/cholmod )
DEPEND="${RDEPEND}
sys-devel/gcc[-nocxx,fortran?]
@@ -130,6 +130,7 @@ src_configure(){
$(petsc_with hdf5) \
$(petsc_with hypre hypre /usr/$(get_libdir)/libHYPRE.so /usr/include/hypre) \
$(petsc_with metis parmetis) \
+ $(petsc_with sparse cholmod) \
$(petsc_with X x) \
$(petsc_with X x11) \
--with-scotch=0 \
@@ -138,7 +139,6 @@ src_configure(){
# failed dependencies, perhaps fixed in upstream:
# $(petsc_with boost) \
# $(petsc_with imagemagick imagemagick /usr/$(get_libdir)/libMagickCore.so /usr/include/ImageMagick) \
-# $(petsc_with sparse cholmod) \
}
src_install(){
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-04 14:31 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-04 14:31 UTC (permalink / raw
To: gentoo-commits
commit: f8af32d29dd0454f05ff052f76873302ea0b6318
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sun Mar 4 14:30:33 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sun Mar 4 14:30:33 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f8af32d2
disabled non-working dependencies
to avoid confusion.
Left comments to re-enable them if fixed in upstream.
---
sci-mathematics/petsc/metadata.xml | 6 ++++--
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 21 ++++++++++++---------
2 files changed, 16 insertions(+), 11 deletions(-)
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index e80effd..dea22b9 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -4,10 +4,12 @@
<herd>sci-mathematics</herd>
<use>
<flag name="afterimage">Use Afterstep image library (media-libs/libafterimage)</flag>
- <flag name="boost">Use boost (dev-libs/boost)</flag>
<flag name="hypre">Use HYPRE (sci-mathematics/hypre) for preconditioning</flag>
<flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
- <flag name="sparse">Use cholmod (sci-libs/cholmod) for sparse factorization</flag>
<flag name="complex-scalars">Make scalars complex</flag>
+ <!-- Disabled:
+ <flag name="boost">Use boost (dev-libs/boost)</flag>
+ <flag name="sparse">Use cholmod (sci-libs/cholmod) for sparse factorization</flag>
+ -->
</use>
</pkgmetadata>
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index 0d972ed..f91d6de 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -15,15 +15,16 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc \
- imagemagick fortran hdf5 hypre metis mpi sparse threads X"
+IUSE="afterimage complex-scalars cxx debug doc \
+ fortran hdf5 hypre metis mpi threads X"
+# Failed: boost imagemagick sparse
REQUIRED_USE="
hypre? ( cxx mpi )
hdf5? ( mpi )
- imagemagick? ( X )
afterimage? ( X )
"
+# imagemagick? ( X )
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
@@ -32,11 +33,11 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
hypre? ( sci-libs/hypre )
metis? ( sci-libs/parmetis )
hdf5? ( sci-libs/hdf5 )
- boost? ( dev-libs/boost )
afterimage? ( media-libs/libafterimage )
- imagemagick? ( media-gfx/imagemagick )
- sparse? ( sci-libs/cholmod )
"
+# boost? ( dev-libs/boost )
+# imagemagick? ( media-gfx/imagemagick )
+# sparse? ( sci-libs/cholmod )
DEPEND="${RDEPEND}
sys-devel/gcc[-nocxx,fortran?]
@@ -126,16 +127,18 @@ src_configure(){
--with-cmake=/usr/bin/cmake \
$(petsc_with afterimage afterimage \
/usr/$(get_libdir)/libAfterImage.so /usr/include/libAfterImage) \
- $(petsc_with sparse cholmod) \
- $(petsc_with boost) \
$(petsc_with hdf5) \
$(petsc_with hypre hypre /usr/$(get_libdir)/libHYPRE.so /usr/include/hypre) \
- $(petsc_with imagemagick imagemagick /usr/$(get_libdir)/libMagickCore.so /usr/include/ImageMagick) \
$(petsc_with metis parmetis) \
$(petsc_with X x) \
$(petsc_with X x11) \
--with-scotch=0 \
${EXTRA_ECONF} || die "configuration failed"
+
+# failed dependencies, perhaps fixed in upstream:
+# $(petsc_with boost) \
+# $(petsc_with imagemagick imagemagick /usr/$(get_libdir)/libMagickCore.so /usr/include/ImageMagick) \
+# $(petsc_with sparse cholmod) \
}
src_install(){
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-03 21:39 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-03 21:39 UTC (permalink / raw
To: gentoo-commits
commit: 00865a7ae9024315189cebc506f9af1a3eddacf0
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sat Mar 3 21:38:13 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sat Mar 3 21:38:13 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=00865a7a
fixed disable X option and use deps
---
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 2 ++
1 files changed, 2 insertions(+), 0 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index a4bc52e..d3aecb0 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -21,6 +21,7 @@ IUSE="afterimage boost complex-scalars cxx debug doc \
REQUIRED_USE="
hypre? ( cxx mpi )
hdf5? ( mpi )
+ afterimage? ( X )
"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
@@ -126,6 +127,7 @@ src_configure(){
$(petsc_with hdf5) \
$(petsc_with hypre hypre /usr/$(get_libdir)/libHYPRE.so /usr/include/hypre) \
$(petsc_with metis parmetis) \
+ $(petsc_with X x) \
$(petsc_with X x11) \
--with-scotch=0 \
${EXTRA_ECONF} || die "configuration failed"
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-03 16:02 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-03 16:02 UTC (permalink / raw
To: gentoo-commits
commit: 161478d0cdf388cd31c2db5c7c639998def50a39
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sat Mar 3 16:01:49 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sat Mar 3 16:01:49 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=161478d0
added optional boost and afterimage dep
---
sci-mathematics/petsc/metadata.xml | 2 ++
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 23 ++++++++++++++++-------
2 files changed, 18 insertions(+), 7 deletions(-)
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index 7f25b9f..e80effd 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -3,9 +3,11 @@
<pkgmetadata>
<herd>sci-mathematics</herd>
<use>
+ <flag name="afterimage">Use Afterstep image library (media-libs/libafterimage)</flag>
<flag name="boost">Use boost (dev-libs/boost)</flag>
<flag name="hypre">Use HYPRE (sci-mathematics/hypre) for preconditioning</flag>
<flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
+ <flag name="sparse">Use cholmod (sci-libs/cholmod) for sparse factorization</flag>
<flag name="complex-scalars">Make scalars complex</flag>
</use>
</pkgmetadata>
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index 7f090fc..a4bc52e 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -15,7 +15,13 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="boost complex-scalars cxx debug doc fortran hdf5 hypre metis mpi threads X"
+IUSE="afterimage boost complex-scalars cxx debug doc \
+ fortran hdf5 hypre metis mpi sparse threads X"
+
+REQUIRED_USE="
+ hypre? ( cxx mpi )
+ hdf5? ( mpi )
+"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
@@ -23,8 +29,10 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
virtual/blas
hypre? ( sci-libs/hypre )
metis? ( sci-libs/parmetis )
- hdf5? ( sci-libs/hdf5[!mpi?] )
+ hdf5? ( sci-libs/hdf5 )
boost? ( dev-libs/boost )
+ afterimage? ( media-libs/libafterimage )
+ sparse? ( sci-libs/cholmod )
"
DEPEND="${RDEPEND}
@@ -32,8 +40,6 @@ DEPEND="${RDEPEND}
dev-util/cmake
"
-REQUIRED_USE="hypre? ( cxx mpi )"
-
S="${WORKDIR}/${MY_P}"
src_prepare(){
@@ -106,18 +112,21 @@ src_configure(){
$(petsc_enable fortran) \
$(use fortran && echo "$(petsc_select mpi fc /usr/bin/mpif77 $(tc-getF77))") \
$(petsc_enable mpi mpi-compilers) \
- $(petsc_with X) \
- $(petsc_with boost) \
$(petsc_enable threads pthread) \
$(petsc_enable threads pthreadclasses) \
+ $(petsc_select complex-scalars scalar-type complex real) \
--with-windows-graphics=0 \
--with-matlab=0 \
--with-python=0 \
--with-cmake=/usr/bin/cmake \
+ $(petsc_with afterimage afterimage \
+ /usr/$(get_libdir)/libAfterImage.so /usr/include/libAfterImage) \
+ $(petsc_with sparse cholmod) \
+ $(petsc_with boost) \
$(petsc_with hdf5) \
$(petsc_with hypre hypre /usr/$(get_libdir)/libHYPRE.so /usr/include/hypre) \
$(petsc_with metis parmetis) \
- $(petsc_select complex-scalars scalar-type complex real) \
+ $(petsc_with X x11) \
--with-scotch=0 \
${EXTRA_ECONF} || die "configuration failed"
}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-03 14:28 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-03 14:28 UTC (permalink / raw
To: gentoo-commits
commit: c1e83820b43f582dd4e6c8b3c33d243522220809
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sat Mar 3 14:26:54 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sat Mar 3 14:26:54 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c1e83820
further simplification, added more optional deps
simplification using the petsc_with script proposed by
bicatali (slightly reworked, some fixes)
added boost dependency and thread support
---
sci-mathematics/petsc/metadata.xml | 1 +
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 64 +++++++++++++++++------------
2 files changed, 38 insertions(+), 27 deletions(-)
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index 079f8ff..7f25b9f 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -3,6 +3,7 @@
<pkgmetadata>
<herd>sci-mathematics</herd>
<use>
+ <flag name="boost">Use boost (dev-libs/boost)</flag>
<flag name="hypre">Use HYPRE (sci-mathematics/hypre) for preconditioning</flag>
<flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
<flag name="complex-scalars">Make scalars complex</flag>
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index 643e146..7f090fc 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -15,7 +15,7 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="complex-scalars cxx debug doc fortran hdf5 hypre metis mpi X"
+IUSE="boost complex-scalars cxx debug doc fortran hdf5 hypre metis mpi threads X"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
@@ -24,6 +24,7 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
hypre? ( sci-libs/hypre )
metis? ( sci-libs/parmetis )
hdf5? ( sci-libs/hdf5[!mpi?] )
+ boost? ( dev-libs/boost )
"
DEPEND="${RDEPEND}
@@ -37,6 +38,7 @@ S="${WORKDIR}/${MY_P}"
src_prepare(){
epatch "${FILESDIR}/${PN}-configure-pic.patch"
+ epatch "${FILESDIR}/${PN}-disable-env-warnings.patch"
epatch "${FILESDIR}/${PN}-disable-rpath.patch"
}
@@ -45,14 +47,28 @@ src_configure(){
petsc_enable(){
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
}
+ # add external library:
+ # petsc_with use_flag libname libdir
+ # petsc_with use_flag libname lib include
+ petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# == 4 ]]; then
+ myuse="${myuse} --with-${p}-lib=\"${3}\""
+ myuse="${myuse} --with-${p}-include=${4}"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+ }
# select between configure options depending on use flag
- pestc_select() {
+ petsc_select() {
use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
}
- # add info about library include dirs and lib file
- petsc_lib_info(){
- use "$1" && echo "--with-${4:-$1}-include=$2 --with-${4:-$1}-lib=$3"
- }
local mylang
local myopt
@@ -64,21 +80,17 @@ src_configure(){
export PETSC_DIR="${S}"
export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
- # flags difficult to pass due to correct quoting of spaces
- local myconf
- myconf[1]="CFLAGS=${CFLAGS}"
- myconf[2]="CXXFLAGS=${CXXFLAGS}"
- myconf[3]="LDFLAGS=${LDFLAGS}"
- myconf[4]="--with-blas-lapack-lib=$(pkg-config --libs lapack)"
-
if use debug; then
strip-flags
filter-flags -O*
fi
# run petsc configure script
- python "${S}/config/configure.py" \
+ ./configure \
--prefix="${EPREFIX}/usr" \
+ CFLAGS="${CFLAGS}" \
+ CXXFLAGS="${CXXFLAGS}" \
+ LDFLAGS="${LDFLAGS}" \
--with-shared-libraries \
--with-single-library \
--with-clanguage=${mylang} \
@@ -86,27 +98,28 @@ src_configure(){
--with-petsc-arch=${PETSC_ARCH} \
--with-precision=double \
--with-gnu-compilers \
+ --with-blas-lapack-lib="$(pkg-config --libs lapack)" \
$(petsc_enable debug debugging) \
- $(petsc_enable fortran) \
$(petsc_enable mpi) \
$(petsc_select mpi cc /usr/bin/mpicc $(tc-getCC)) \
$(petsc_select mpi cxx /usr/bin/mpicxx $(tc-getCXX)) \
- $(use fortran && $(pestc_select mpi fc /usr/bin/mpif77 $(tc-getF77))) \
+ $(petsc_enable fortran) \
+ $(use fortran && echo "$(petsc_select mpi fc /usr/bin/mpif77 $(tc-getF77))") \
$(petsc_enable mpi mpi-compilers) \
- $(petsc_enable X) \
+ $(petsc_with X) \
+ $(petsc_with boost) \
+ $(petsc_enable threads pthread) \
+ $(petsc_enable threads pthreadclasses) \
--with-windows-graphics=0 \
--with-matlab=0 \
--with-python=0 \
--with-cmake=/usr/bin/cmake \
- $(petsc_enable hdf5) \
- $(petsc_lib_info hdf5 /usr/include /usr/$(get_libdir)/libhdf5.so) \
- $(petsc_enable hypre) \
- $(petsc_lib_info hypre /usr/include/hypre /usr/$(get_libdir)/libHYPRE.so) \
- $(petsc_enable metis parmetis) \
- $(petsc_lib_info metis /usr/include/parmetis /usr/$(get_libdir)/libparmetis.so parmetis) \
+ $(petsc_with hdf5) \
+ $(petsc_with hypre hypre /usr/$(get_libdir)/libHYPRE.so /usr/include/hypre) \
+ $(petsc_with metis parmetis) \
$(petsc_select complex-scalars scalar-type complex real) \
--with-scotch=0 \
- "${myconf[@]}"
+ ${EXTRA_ECONF} || die "configuration failed"
}
src_install(){
@@ -159,7 +172,4 @@ pkg_postinst() {
elog "The petsc ebuild is still under development."
elog "Help us improve the ebuild in:"
elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
- elog "Note that PETSC_ARCH may be dropped in future since " \
- "upstream now also supports installations without " \
- "different subdirectories."
}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-03 12:37 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-03 12:37 UTC (permalink / raw
To: gentoo-commits
commit: 41ed1fd94c2ef4ab44e3c65aa04214e09e767d90
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sat Mar 3 12:18:07 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sat Mar 3 12:18:07 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=41ed1fd9
fixed banned dosed, added more comments
---
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 17 +++++++++++++----
1 files changed, 13 insertions(+), 4 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index d82206c..643e146 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -110,6 +110,10 @@ src_configure(){
}
src_install(){
+ # petsc install structure is very different from
+ # installing headers to /usr/include/petsc and lib to /usr/lib
+ # it also installs many unneeded executables and scripts
+ # so manual install is easier than cleanup after "emake install"
insinto /usr/include/"${PN}"
doins "${S}"/include/*.h "${S}"/include/*.hh
insinto /usr/include/"${PN}/${PETSC_ARCH}"/include
@@ -122,14 +126,16 @@ src_install(){
doins "${S}"/conf/{variables,rules,test}
insinto /usr/include/"${PN}/${PETSC_ARCH}"/conf
doins "${S}/${PETSC_ARCH}"/conf/{petscrules,petscvariables,RDict.db}
-
insinto /usr/include/"${PN}"/private
doins "${S}"/include/private/*.h
- dosed "s:${S}:/usr:g" /usr/include/"${PN}/${PETSC_ARCH}"/include/petscconf.h
- dosed "s:${PETSC_ARCH}/lib:$(get_libdir):g" /usr/include/"${PN}/${PETSC_ARCH}"/include/petscconf.h
- dosed "s:INSTALL_DIR =.*:INSTALL_DIR = /usr:" /usr/include/"${PN}/${PETSC_ARCH}"/conf/petscvariables
+ # fix configuration files: replace ${S} by installed location
+ sed -i "s:${S}:/usr:g" ${D}/usr/include/"${PN}/${PETSC_ARCH}"/include/petscconf.h
+ sed -i "s:${PETSC_ARCH}/lib:$(get_libdir):g" ${D}/usr/include/"${PN}/${PETSC_ARCH}"/include/petscconf.h
+ sed -i "s:INSTALL_DIR =.*:INSTALL_DIR = /usr:" ${D}/usr/include/"${PN}/${PETSC_ARCH}"/conf/petscvariables
+ # add information about installation directory and
+ # PETSC_ARCH to environmental variables
cat >> "${T}"/99petsc <<- EOF
PETSC_ARCH=${PETSC_ARCH}
PETSC_DIR=/usr/include/${PN}
@@ -153,4 +159,7 @@ pkg_postinst() {
elog "The petsc ebuild is still under development."
elog "Help us improve the ebuild in:"
elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
+ elog "Note that PETSC_ARCH may be dropped in future since " \
+ "upstream now also supports installations without " \
+ "different subdirectories."
}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-03-03 12:37 Jens-Malte Gottfried
0 siblings, 0 replies; 59+ messages in thread
From: Jens-Malte Gottfried @ 2012-03-03 12:37 UTC (permalink / raw
To: gentoo-commits
commit: 7240c8e8121265ef48a640ec60ceb353e968ec72
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Sat Mar 3 10:23:36 2012 +0000
Commit: Jens-Malte Gottfried <jmg <AT> godefridus <DOT> de>
CommitDate: Sat Mar 3 10:23:36 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7240c8e8
reworked configure function
Tried to improve readability and avoid myconf array where possible.
Thanks for the hints by bicatali.
---
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 160 +++++++++++------------------
1 files changed, 58 insertions(+), 102 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.2_p6.ebuild b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
index 178b6bc..d82206c 100644
--- a/sci-mathematics/petsc/petsc-3.2_p6.ebuild
+++ b/sci-mathematics/petsc/petsc-3.2_p6.ebuild
@@ -2,7 +2,7 @@
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=4
inherit flag-o-matic fortran-2 toolchain-funcs
@@ -15,7 +15,7 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="complex-scalars cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
+IUSE="complex-scalars cxx debug doc fortran hdf5 hypre metis mpi X"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
@@ -31,12 +31,9 @@ DEPEND="${RDEPEND}
dev-util/cmake
"
-S="${WORKDIR}/${MY_P}"
+REQUIRED_USE="hypre? ( cxx mpi )"
-if use hypre; then
- use cxx || die "hypre needs cxx, please enable cxx or disable hypre use flag"
- use mpi || die "hypre needs mpi, please enable mpi or disable hypre use flag"
-fi
+S="${WORKDIR}/${MY_P}"
src_prepare(){
epatch "${FILESDIR}/${PN}-configure-pic.patch"
@@ -44,111 +41,72 @@ src_prepare(){
}
src_configure(){
+ # petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+ petsc_enable(){
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+ }
+ # select between configure options depending on use flag
+ pestc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+ }
+ # add info about library include dirs and lib file
+ petsc_lib_info(){
+ use "$1" && echo "--with-${4:-$1}-include=$2 --with-${4:-$1}-lib=$3"
+ }
+
local mylang
local myopt
- local myconf
use cxx && mylang="cxx" || mylang="c"
use debug && myopt="debug" || myopt="opt"
- export PETSC_DIR="${S}" || die
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" || die
-
- myconf[10]="--with-blas-lapack-lib=$(pkg-config --libs lapack)"
- myconf[11]="CFLAGS=${CFLAGS}"
- myconf[12]="CXXFLAGS=${CXXFLAGS}"
- myconf[13]="LDFLAGS=${LDFLAGS}"
- myconf[14]="--with-windows-graphics=0"
- myconf[15]="--with-matlab=0"
- myconf[16]="--with-python=0"
- myconf[17]="--with-clanguage=${mylang}"
- myconf[18]="--with-single-library=1"
- myconf[19]="--with-petsc-arch=${PETSC_ARCH}"
- myconf[20]="--with-precision=double"
- myconf[21]="--with-gnu-compilers=1"
- myconf[22]="--with-cmake=/usr/bin/cmake"
- use amd64 \
- && myconf[23]="--with-64-bit-pointers=1" \
- || myconf[23]="--with-64-bit-pointers=0"
- use cxx \
- && myconf[24]="--with-c-support=1"
- use amd64 \
- && myconf[25]="--with-64-bit-indices=1" \
- || myconf[25]="--with-64-bit-indices=0"
-
- if use mpi; then
- myconf[30]="--with-cc=/usr/bin/mpicc"
- myconf[31]="--with-cxx=/usr/bin/mpicxx"
- use fortran && myconf[32]="--with-fc=/usr/bin/mpif77"
- myconf[33]="--with-mpi=1"
- myconf[34]="--with-mpi-compilers=1"
- else
- myconf[30]="--with-cc=$(tc-getCC)"
- myconf[31]="--with-cxx=$(tc-getCXX)"
- use fortran && myconf[32]="--with-fc=$(tc-getF77)"
- myconf[33]="--with-mpi=0"
- fi
+ # environmental variables expected by petsc during build
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
- use X \
- && myconf[40]="--with-X=1" \
- || myconf[40]="--with-X=0"
- use static-libs \
- && myconf[41]="--with-shared-libraries=0" \
- || myconf[41]="--with-shared-libraries=1"
- use fortran \
- && myconf[43]="--with-fortran=1" \
- || myconf[43]="--with-fortran=0"
+ # flags difficult to pass due to correct quoting of spaces
+ local myconf
+ myconf[1]="CFLAGS=${CFLAGS}"
+ myconf[2]="CXXFLAGS=${CXXFLAGS}"
+ myconf[3]="LDFLAGS=${LDFLAGS}"
+ myconf[4]="--with-blas-lapack-lib=$(pkg-config --libs lapack)"
if use debug; then
strip-flags
filter-flags -O*
- myconf[44]="--with-debugging=1"
- else
- myconf[44]="--with-debugging=0"
- fi
-
- if use hypre; then
- # hypre cannot handle 64 bit indices, therefore disabled
- myconf[25]="--with-64-bit-indices=0"
- myconf[52]="--with-hypre=1"
- myconf[53]="--with-hypre-include=/usr/include/hypre"
- use static-libs \
- && myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.a" \
- || myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.so"
- else
- myconf[52]="--with-hypre=0"
- fi
-
- if use metis; then
- # parmetis cannot handle 64 bit indices, therefore disabled
- myconf[25]="--with-64-bit-indices=0"
- myconf[61]="--with-parmetis=1"
- myconf[62]="--with-parmetis-include=/usr/include/parmetis"
- myconf[63]="--with-parmetis-lib=/usr/$(get_libdir)/libparmetis.so"
- else
- myconf[61]="--with-parmetis=0"
- fi
-
- if use hdf5; then
- myconf[71]="--with-hdf5=1"
- myconf[72]="--with-hdf5-include=/usr/include"
- myconf[73]="--with-hdf5-lib=/usr/$(get_libdir)/libhdf5.so"
- else
- myconf[71]="--with-hdf5=0"
- fi
-
- myconf[81]="--with-scotch=0"
-
- if use complex-scalars; then
- # cannot enable C support with complex scalars
- # (cannot even set configure option to zero!)
- myconf[23]=""
- myconf[82]="--with-scalar-type=complex"
fi
- einfo "Configure options: ${myconf[@]}"
- python "${S}/config/configure.py" "${myconf[@]}" \
- || die "PETSc configuration failed"
+ # run petsc configure script
+ python "${S}/config/configure.py" \
+ --prefix="${EPREFIX}/usr" \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-clanguage=${mylang} \
+ $(petsc_enable cxx c-support) \
+ --with-petsc-arch=${PETSC_ARCH} \
+ --with-precision=double \
+ --with-gnu-compilers \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable fortran) \
+ $(petsc_enable mpi) \
+ $(petsc_select mpi cc /usr/bin/mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx /usr/bin/mpicxx $(tc-getCXX)) \
+ $(use fortran && $(pestc_select mpi fc /usr/bin/mpif77 $(tc-getF77))) \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_enable X) \
+ --with-windows-graphics=0 \
+ --with-matlab=0 \
+ --with-python=0 \
+ --with-cmake=/usr/bin/cmake \
+ $(petsc_enable hdf5) \
+ $(petsc_lib_info hdf5 /usr/include /usr/$(get_libdir)/libhdf5.so) \
+ $(petsc_enable hypre) \
+ $(petsc_lib_info hypre /usr/include/hypre /usr/$(get_libdir)/libHYPRE.so) \
+ $(petsc_enable metis parmetis) \
+ $(petsc_lib_info metis /usr/include/parmetis /usr/$(get_libdir)/libparmetis.so parmetis) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ --with-scotch=0 \
+ "${myconf[@]}"
}
src_install(){
@@ -188,9 +146,7 @@ src_install(){
dohtml -r docs/*.html docs/changes docs/manualpages
fi
- use static-libs \
- && dolib.a "${S}/${PETSC_ARCH}"/lib/*.a \
- || dolib.so "${S}/${PETSC_ARCH}"/lib/*.so
+ dolib.so "${S}/${PETSC_ARCH}"/lib/*.so
}
pkg_postinst() {
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-02-28 20:24 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2012-02-28 20:24 UTC (permalink / raw
To: gentoo-commits
commit: a36159de5ad3beccc41a443debe1348cbb3fd804
Author: Jens-Malte Gottfried <jmgottfried <AT> web <DOT> de>
AuthorDate: Mon Feb 27 21:22:48 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Feb 27 21:22:48 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a36159de
fixed hypre dependency
---
sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
index a01b135..ddd7a4c 100644
--- a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
@@ -21,7 +21,7 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
virtual/lapack
virtual/blas
- hypre? ( sci-libs/hypre[static-libs=] )
+ hypre? ( sci-libs/hypre )
metis? ( sci-libs/parmetis )
hdf5? ( sci-libs/hdf5[!mpi?] )
"
^ permalink raw reply related [flat|nested] 59+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2012-01-23 6:35 Sebastien Fabbro
0 siblings, 0 replies; 59+ messages in thread
From: Sebastien Fabbro @ 2012-01-23 6:35 UTC (permalink / raw
To: gentoo-commits
commit: 667550afc2c913d35fff9ebba1e98f1b9adf8767
Author: Sébastien Fabbro <sebfabbro <AT> gmail <DOT> com>
AuthorDate: Mon Jan 23 06:35:00 2012 +0000
Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org>
CommitDate: Mon Jan 23 06:35:00 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=667550af
switched to main tree hypre
---
sci-mathematics/petsc/ChangeLog | 7 +-
sci-mathematics/petsc/petsc-3.1_p4.ebuild | 134 -------------------
sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild | 177 --------------------------
sci-mathematics/petsc/petsc-3.1_p7.ebuild | 177 --------------------------
sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild | 4 +-
sci-mathematics/petsc/petsc-3.1_p8.ebuild | 177 --------------------------
6 files changed, 8 insertions(+), 668 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index 0604c7f..7826fc6 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -1,7 +1,12 @@
# ChangeLog for sci-mathematics/petsc
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 23 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org> -petsc-3.1_p4.ebuild,
+ -petsc-3.1_p5-r2.ebuild, -petsc-3.1_p7.ebuild, -petsc-3.1_p8.ebuild,
+ petsc-3.1_p8-r1.ebuild:
+ switched to main tree hypre
+
21 Jun 2011; Justin Lecher <jlec@gentoo.org> petsc-3.1_p4.ebuild,
petsc-3.1_p5-r2.ebuild, petsc-3.1_p7.ebuild, petsc-3.1_p8.ebuild,
petsc-3.1_p8-r1.ebuild, metadata.xml:
diff --git a/sci-mathematics/petsc/petsc-3.1_p4.ebuild b/sci-mathematics/petsc/petsc-3.1_p4.ebuild
deleted file mode 100644
index 6adee0a..0000000
--- a/sci-mathematics/petsc/petsc-3.1_p4.ebuild
+++ /dev/null
@@ -1,134 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-inherit flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_/-}"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/petsc-as/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="cxx debug doc fortran mpi static-libs X"
-
-RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
- X? ( x11-libs/libX11 )
- virtual/lapack
- virtual/blas"
-
-DEPEND="${RDEPEND}
- sys-devel/gcc[-nocxx,fortran?]"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare(){
- epatch "${FILESDIR}/${PN}-configure-pic.patch"
- # My failed tries on the parallel build QA warnings:
- # sed -i "s/-\?\(@\?\)\${OMAKE}/\1\${MAKE}/g" makefile || die "sed failed"
- # sed -i "s/\ make /\ ${MAKE} /g" makefile || die "sed failed"
-}
-
-src_configure(){
- local mylang
- local myopt
- local myconf
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- export PETSC_DIR="${S}" || die
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" || die
-
- if use mpi; then
- ## this works independently of the used mpi implementation
- ## (openmpi/mpich2)
- myconf="${myconf} --with-cc=/usr/bin/mpicc --with-cxx=/usr/bin/mpicxx"
- myconf="${myconf} --with-fc=/usr/bin/mpif77"
- myconf="${myconf} --with-mpi=1 --with-mpi-compilers=1"
-
- ## of openmpi is used, the following works too, but fails with mpich2
- #myconf="${myconf} --with-mpi-include=/usr/include"
- ## adding mpi libraries, -lmpi only is not sufficient if compiling
- ## with g++, mpi_f77 needed when using fortran (mpi_f90 caused errors)
- #myconf="${myconf} --with-mpi-lib=[/usr/$(get_libdir)/libmpi.so"
- #use cxx && myconf="${myconf},/usr/$(get_libdir)/libmpi_cxx.so"
- #use fortran && myconf="${myconf},/usr/$(get_libdir)/libmpi_f77.so"
- #myconf="${myconf}]"
- #myconf="${myconf} --known-mpi-shared=1"
- else
- myconf="${myconf} --with-cc=$(tc-getCC) --with-cxx=$(tc-getCXX)"
- myconf="${myconf} --with-mpi=0"
- fi
-
- use X \
- && myconf="${myconf} --with-X=1" \
- || myconf="${myconf} --with-X=0"
- use static-libs \
- && myconf="${myconf} --with-shared=0" \
- || myconf="${myconf} --with-shared=1"
- use amd64 \
- && myconf="${myconf} --with-64-bit-indices=1" \
- || myconf="${myconf} --with-64-bit-indices=0"
- use fortran \
- && myconf="${myconf} --with-fortran=1" \
- || myconf="${myconf} --with-fortran=0"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- myconf="${myconf} --with-debugging=1"
- else
- myconf="${myconf} --with-debugging=0"
- fi
-
- python "${S}"/config/configure.py ${myconf} \
- CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" \
- --with-windows-graphics=0 --with-matlab=0 --with-python=0 \
- --with-clanguage="${mylang}" --with-single-library=1 \
- --with-petsc-arch="${PETSC_ARCH}" --with-precision=double \
- --with-blas-lapack-lib="$(pkg-config --libs lapack)" \
- || die "PETSc configuration failed"
-}
-
-src_install(){
- insinto /usr/include/"${PN}"
- doins "${S}"/include/*.h "${S}"/include/*.hh
- doins "${S}/${PETSC_ARCH}"/include/*.h
-
- insinto /usr/include/"${PN}"/private
- doins "${S}"/include/private/*.h
-
- # fix paths stored in petscconf.h
- dosed "s:${S}:/usr:g" /usr/include/"${PN}"/petscconf.h
- dosed "s:${PETSC_ARCH}/lib:$(get_libdir):g" /usr/include/"${PN}"/petscconf.h \
-
- if ! use mpi ; then
- insinto /usr/include/"${PN}"/mpiuni
- doins "${S}"/include/mpiuni/*.h
- fi
-
- if use doc ; then
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-
- use static-libs \
- && dolib.a "${S}/${PETSC_ARCH}"/lib/*.a \
- || dolib.so "${S}/${PETSC_ARCH}"/lib/*.so
-}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
- elog "This ebuild is known to have parallel build issues, "
- elog "hopefully resolved by upstream soon."
- elog "Another problem is that you can break this package by"
- elog "switching your mpi implementation without rebuild petsc."
-}
diff --git a/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild b/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
deleted file mode 100644
index f3165c2..0000000
--- a/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
+++ /dev/null
@@ -1,177 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-inherit flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_/-}"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/petsc-as/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
-
-RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
- X? ( x11-libs/libX11 )
- virtual/lapack
- virtual/blas
- hypre? ( >=sci-mathematics/hypre-2.6.0b[static-libs=] )
- metis? ( sci-libs/parmetis )
- hdf5? ( sci-libs/hdf5[!mpi?] )
-"
-
-DEPEND="${RDEPEND}
- sys-devel/gcc[-nocxx,fortran?]"
-
-S="${WORKDIR}/${MY_P}"
-
-if use hypre; then
- use cxx || die "hypre needs cxx, please enable cxx or disable hypre use flag"
- use mpi || die "hypre needs mpi, please enable mpi or disable hypre use flag"
-fi
-
-src_prepare(){
- epatch "${FILESDIR}/${PN}-configure-pic.patch"
- epatch "${FILESDIR}/${PN}-disable-rpath.patch"
-}
-
-src_configure(){
- local mylang
- local myopt
- local myconf
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- export PETSC_DIR="${S}" || die
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" || die
-
- myconf[10]="--with-blas-lapack-lib=$(pkg-config --libs lapack)"
- myconf[11]="CFLAGS=${CFLAGS}"
- myconf[12]="CXXFLAGS=${CXXFLAGS}"
- myconf[13]="LDFLAGS=${LDFLAGS}"
- myconf[14]="--with-windows-graphics=0"
- myconf[15]="--with-matlab=0"
- myconf[16]="--with-python=0"
- myconf[17]="--with-clanguage=${mylang}"
- myconf[18]="--with-single-library=1"
- myconf[19]="--with-petsc-arch=${PETSC_ARCH}"
- myconf[20]="--with-precision=double"
- myconf[21]="--with-gnu-compilers=1"
- use amd64 \
- && myconf[22]="--with-64-bit-pointers=1" \
- || myconf[22]="--with-64-bit-pointers=0"
- use cxx \
- && myconf[23]="--with-c-support=1"
- use amd64 \
- && myconf[24]="--with-64-bit-indices=1" \
- || myconf[24]="--with-64-bit-indices=0"
-
- if use mpi; then
- myconf[30]="--with-cc=/usr/bin/mpicc"
- myconf[31]="--with-cxx=/usr/bin/mpicxx"
- use fortran && myconf[32]="--with-fc=/usr/bin/mpif77"
- myconf[33]="--with-mpi=1"
- myconf[34]="--with-mpi-compilers=1"
- else
- myconf[30]="--with-cc=$(tc-getCC)"
- myconf[31]="--with-cxx=$(tc-getCXX)"
- use fortran && myconf[32]="--with-fc=$(tc-getF77)"
- myconf[33]="--with-mpi=0"
- fi
-
- use X \
- && myconf[40]="--with-X=1" \
- || myconf[40]="--with-X=0"
- use static-libs \
- && myconf[41]="--with-shared=0" \
- || myconf[41]="--with-shared=1"
- use fortran \
- && myconf[43]="--with-fortran=1" \
- || myconf[43]="--with-fortran=0"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- myconf[44]="--with-debugging=1"
- else
- myconf[44]="--with-debugging=0"
- fi
-
- if use hypre; then
- # hypre cannot handle 64 bit indices, therefore disabled
- myconf[24]="--with-64-bit-indices=0"
- myconf[52]="--with-hypre=1"
- myconf[53]="--with-hypre-include=/usr/include/hypre"
- use static-libs \
- && myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.a" \
- || myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.so"
- else
- myconf[52]="--with-hypre=0"
- fi
-
- if use metis; then
- myconf[61]="--with-parmetis=1"
- myconf[62]="--with-parmetis-include=/usr/include/parmetis"
- myconf[63]="--with-parmetis-lib=/usr/$(get_libdir)/libparmetis.so"
- else
- myconf[61]="--with-parmetis=0"
- fi
-
- if use hdf5; then
- myconf[71]="--with-hdf5=1"
- myconf[72]="--with-hdf5-include=/usr/include"
- myconf[73]="--with-hdf5-lib=/usr/$(get_libdir)/libhdf5.so"
- else
- myconf[71]="--with-hdf5=0"
- fi
-
- myconf[81]="--with-scotch=0"
-
- einfo "Configure options: ${myconf[@]}"
- python "${S}/config/configure.py" "${myconf[@]}" \
- || die "PETSc configuration failed"
-}
-
-src_install(){
- insinto /usr/include/"${PN}"
- doins "${S}"/include/*.h "${S}"/include/*.hh
- doins "${S}/${PETSC_ARCH}"/include/*.h
-
- insinto /usr/include/"${PN}"/private
- doins "${S}"/include/private/*.h
-
- # fix paths stored in petscconf.h
- dosed "s:${S}:/usr:g" /usr/include/"${PN}"/petscconf.h
- dosed "s:${PETSC_ARCH}/lib:$(get_libdir):g" /usr/include/"${PN}"/petscconf.h \
-
- if ! use mpi ; then
- insinto /usr/include/"${PN}"/mpiuni
- doins "${S}"/include/mpiuni/*.h
- fi
-
- if use doc ; then
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-
- use static-libs \
- && dolib.a "${S}/${PETSC_ARCH}"/lib/*.a \
- || dolib.so "${S}/${PETSC_ARCH}"/lib/*.so
-}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
- elog "This ebuild is known to have parallel build issues, "
- elog "hopefully resolved by upstream soon."
- elog "Another problem is that you can break this package by"
- elog "switching your mpi implementation without rebuild petsc."
-}
diff --git a/sci-mathematics/petsc/petsc-3.1_p7.ebuild b/sci-mathematics/petsc/petsc-3.1_p7.ebuild
deleted file mode 100644
index f3165c2..0000000
--- a/sci-mathematics/petsc/petsc-3.1_p7.ebuild
+++ /dev/null
@@ -1,177 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-inherit flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_/-}"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/petsc-as/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
-
-RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
- X? ( x11-libs/libX11 )
- virtual/lapack
- virtual/blas
- hypre? ( >=sci-mathematics/hypre-2.6.0b[static-libs=] )
- metis? ( sci-libs/parmetis )
- hdf5? ( sci-libs/hdf5[!mpi?] )
-"
-
-DEPEND="${RDEPEND}
- sys-devel/gcc[-nocxx,fortran?]"
-
-S="${WORKDIR}/${MY_P}"
-
-if use hypre; then
- use cxx || die "hypre needs cxx, please enable cxx or disable hypre use flag"
- use mpi || die "hypre needs mpi, please enable mpi or disable hypre use flag"
-fi
-
-src_prepare(){
- epatch "${FILESDIR}/${PN}-configure-pic.patch"
- epatch "${FILESDIR}/${PN}-disable-rpath.patch"
-}
-
-src_configure(){
- local mylang
- local myopt
- local myconf
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- export PETSC_DIR="${S}" || die
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" || die
-
- myconf[10]="--with-blas-lapack-lib=$(pkg-config --libs lapack)"
- myconf[11]="CFLAGS=${CFLAGS}"
- myconf[12]="CXXFLAGS=${CXXFLAGS}"
- myconf[13]="LDFLAGS=${LDFLAGS}"
- myconf[14]="--with-windows-graphics=0"
- myconf[15]="--with-matlab=0"
- myconf[16]="--with-python=0"
- myconf[17]="--with-clanguage=${mylang}"
- myconf[18]="--with-single-library=1"
- myconf[19]="--with-petsc-arch=${PETSC_ARCH}"
- myconf[20]="--with-precision=double"
- myconf[21]="--with-gnu-compilers=1"
- use amd64 \
- && myconf[22]="--with-64-bit-pointers=1" \
- || myconf[22]="--with-64-bit-pointers=0"
- use cxx \
- && myconf[23]="--with-c-support=1"
- use amd64 \
- && myconf[24]="--with-64-bit-indices=1" \
- || myconf[24]="--with-64-bit-indices=0"
-
- if use mpi; then
- myconf[30]="--with-cc=/usr/bin/mpicc"
- myconf[31]="--with-cxx=/usr/bin/mpicxx"
- use fortran && myconf[32]="--with-fc=/usr/bin/mpif77"
- myconf[33]="--with-mpi=1"
- myconf[34]="--with-mpi-compilers=1"
- else
- myconf[30]="--with-cc=$(tc-getCC)"
- myconf[31]="--with-cxx=$(tc-getCXX)"
- use fortran && myconf[32]="--with-fc=$(tc-getF77)"
- myconf[33]="--with-mpi=0"
- fi
-
- use X \
- && myconf[40]="--with-X=1" \
- || myconf[40]="--with-X=0"
- use static-libs \
- && myconf[41]="--with-shared=0" \
- || myconf[41]="--with-shared=1"
- use fortran \
- && myconf[43]="--with-fortran=1" \
- || myconf[43]="--with-fortran=0"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- myconf[44]="--with-debugging=1"
- else
- myconf[44]="--with-debugging=0"
- fi
-
- if use hypre; then
- # hypre cannot handle 64 bit indices, therefore disabled
- myconf[24]="--with-64-bit-indices=0"
- myconf[52]="--with-hypre=1"
- myconf[53]="--with-hypre-include=/usr/include/hypre"
- use static-libs \
- && myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.a" \
- || myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.so"
- else
- myconf[52]="--with-hypre=0"
- fi
-
- if use metis; then
- myconf[61]="--with-parmetis=1"
- myconf[62]="--with-parmetis-include=/usr/include/parmetis"
- myconf[63]="--with-parmetis-lib=/usr/$(get_libdir)/libparmetis.so"
- else
- myconf[61]="--with-parmetis=0"
- fi
-
- if use hdf5; then
- myconf[71]="--with-hdf5=1"
- myconf[72]="--with-hdf5-include=/usr/include"
- myconf[73]="--with-hdf5-lib=/usr/$(get_libdir)/libhdf5.so"
- else
- myconf[71]="--with-hdf5=0"
- fi
-
- myconf[81]="--with-scotch=0"
-
- einfo "Configure options: ${myconf[@]}"
- python "${S}/config/configure.py" "${myconf[@]}" \
- || die "PETSc configuration failed"
-}
-
-src_install(){
- insinto /usr/include/"${PN}"
- doins "${S}"/include/*.h "${S}"/include/*.hh
- doins "${S}/${PETSC_ARCH}"/include/*.h
-
- insinto /usr/include/"${PN}"/private
- doins "${S}"/include/private/*.h
-
- # fix paths stored in petscconf.h
- dosed "s:${S}:/usr:g" /usr/include/"${PN}"/petscconf.h
- dosed "s:${PETSC_ARCH}/lib:$(get_libdir):g" /usr/include/"${PN}"/petscconf.h \
-
- if ! use mpi ; then
- insinto /usr/include/"${PN}"/mpiuni
- doins "${S}"/include/mpiuni/*.h
- fi
-
- if use doc ; then
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-
- use static-libs \
- && dolib.a "${S}/${PETSC_ARCH}"/lib/*.a \
- || dolib.so "${S}/${PETSC_ARCH}"/lib/*.so
-}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
- elog "This ebuild is known to have parallel build issues, "
- elog "hopefully resolved by upstream soon."
- elog "Another problem is that you can break this package by"
- elog "switching your mpi implementation without rebuild petsc."
-}
diff --git a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
index a187628..a01b135 100644
--- a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -21,7 +21,7 @@ RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
virtual/lapack
virtual/blas
- hypre? ( >=sci-mathematics/hypre-2.6.0b[static-libs=] )
+ hypre? ( sci-libs/hypre[static-libs=] )
metis? ( sci-libs/parmetis )
hdf5? ( sci-libs/hdf5[!mpi?] )
"
diff --git a/sci-mathematics/petsc/petsc-3.1_p8.ebuild b/sci-mathematics/petsc/petsc-3.1_p8.ebuild
deleted file mode 100644
index aca7776..0000000
--- a/sci-mathematics/petsc/petsc-3.1_p8.ebuild
+++ /dev/null
@@ -1,177 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-inherit flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_/-}"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/petsc-as/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
-
-RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
- X? ( x11-libs/libX11 )
- virtual/lapack
- virtual/blas
- hypre? ( >=sci-mathematics/hypre-2.6.0b[static-libs=] )
- metis? ( sci-libs/parmetis )
- hdf5? ( sci-libs/hdf5[!mpi?] )
-"
-
-DEPEND="${RDEPEND}
- sys-devel/gcc[-nocxx,fortran?]"
-
-S="${WORKDIR}/${MY_P}"
-
-if use hypre; then
- use cxx || die "hypre needs cxx, please enable cxx or disable hypre use flag"
- use mpi || die "hypre needs mpi, please enable mpi or disable hypre use flag"
-fi
-
-src_prepare(){
- epatch "${FILESDIR}/${P}-configure-pic.patch"
- epatch "${FILESDIR}/${PN}-disable-rpath.patch"
-}
-
-src_configure(){
- local mylang
- local myopt
- local myconf
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- export PETSC_DIR="${S}" || die
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" || die
-
- myconf[10]="--with-blas-lapack-lib=$(pkg-config --libs lapack)"
- myconf[11]="CFLAGS=${CFLAGS}"
- myconf[12]="CXXFLAGS=${CXXFLAGS}"
- myconf[13]="LDFLAGS=${LDFLAGS}"
- myconf[14]="--with-windows-graphics=0"
- myconf[15]="--with-matlab=0"
- myconf[16]="--with-python=0"
- myconf[17]="--with-clanguage=${mylang}"
- myconf[18]="--with-single-library=1"
- myconf[19]="--with-petsc-arch=${PETSC_ARCH}"
- myconf[20]="--with-precision=double"
- myconf[21]="--with-gnu-compilers=1"
- use amd64 \
- && myconf[22]="--with-64-bit-pointers=1" \
- || myconf[22]="--with-64-bit-pointers=0"
- use cxx \
- && myconf[23]="--with-c-support=1"
- use amd64 \
- && myconf[24]="--with-64-bit-indices=1" \
- || myconf[24]="--with-64-bit-indices=0"
-
- if use mpi; then
- myconf[30]="--with-cc=/usr/bin/mpicc"
- myconf[31]="--with-cxx=/usr/bin/mpicxx"
- use fortran && myconf[32]="--with-fc=/usr/bin/mpif77"
- myconf[33]="--with-mpi=1"
- myconf[34]="--with-mpi-compilers=1"
- else
- myconf[30]="--with-cc=$(tc-getCC)"
- myconf[31]="--with-cxx=$(tc-getCXX)"
- use fortran && myconf[32]="--with-fc=$(tc-getF77)"
- myconf[33]="--with-mpi=0"
- fi
-
- use X \
- && myconf[40]="--with-X=1" \
- || myconf[40]="--with-X=0"
- use static-libs \
- && myconf[41]="--with-shared=0" \
- || myconf[41]="--with-shared=1"
- use fortran \
- && myconf[43]="--with-fortran=1" \
- || myconf[43]="--with-fortran=0"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- myconf[44]="--with-debugging=1"
- else
- myconf[44]="--with-debugging=0"
- fi
-
- if use hypre; then
- # hypre cannot handle 64 bit indices, therefore disabled
- myconf[24]="--with-64-bit-indices=0"
- myconf[52]="--with-hypre=1"
- myconf[53]="--with-hypre-include=/usr/include/hypre"
- use static-libs \
- && myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.a" \
- || myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.so"
- else
- myconf[52]="--with-hypre=0"
- fi
-
- if use metis; then
- myconf[61]="--with-parmetis=1"
- myconf[62]="--with-parmetis-include=/usr/include/parmetis"
- myconf[63]="--with-parmetis-lib=/usr/$(get_libdir)/libparmetis.so"
- else
- myconf[61]="--with-parmetis=0"
- fi
-
- if use hdf5; then
- myconf[71]="--with-hdf5=1"
- myconf[72]="--with-hdf5-include=/usr/include"
- myconf[73]="--with-hdf5-lib=/usr/$(get_libdir)/libhdf5.so"
- else
- myconf[71]="--with-hdf5=0"
- fi
-
- myconf[81]="--with-scotch=0"
-
- einfo "Configure options: ${myconf[@]}"
- python "${S}/config/configure.py" "${myconf[@]}" \
- || die "PETSc configuration failed"
-}
-
-src_install(){
- insinto /usr/include/"${PN}"
- doins "${S}"/include/*.h "${S}"/include/*.hh
- doins "${S}/${PETSC_ARCH}"/include/*.h
-
- insinto /usr/include/"${PN}"/private
- doins "${S}"/include/private/*.h
-
- # fix paths stored in petscconf.h
- dosed "s:${S}:/usr:g" /usr/include/"${PN}"/petscconf.h
- dosed "s:${PETSC_ARCH}/lib:$(get_libdir):g" /usr/include/"${PN}"/petscconf.h \
-
- if ! use mpi ; then
- insinto /usr/include/"${PN}"/mpiuni
- doins "${S}"/include/mpiuni/*.h
- fi
-
- if use doc ; then
- dodoc docs/manual.pdf
- dohtml -r docs/*.html docs/changes docs/manualpages
- fi
-
- use static-libs \
- && dolib.a "${S}/${PETSC_ARCH}"/lib/*.a \
- || dolib.so "${S}/${PETSC_ARCH}"/lib/*.so
-}
-
-pkg_postinst() {
- elog "The petsc ebuild is still under development."
- elog "Help us improve the ebuild in:"
- elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
- elog "This ebuild is known to have parallel build issues, "
- elog "hopefully resolved by upstream soon."
- elog "Another problem is that you can break this package by"
- elog "switching your mpi implementation without rebuild petsc."
-}
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2011-06-24 17:09 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2011-06-24 17:09 UTC (permalink / raw
To: gentoo-commits
commit: bcfe676eb293ebde1f211cff52521a1fe675922d
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 24 15:09:48 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 24 15:09:48 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bcfe676e
Sort inherit and/or USE
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-mathematics/petsc/petsc-3.1_p4.ebuild | 2 +-
sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild | 2 +-
sci-mathematics/petsc/petsc-3.1_p7.ebuild | 2 +-
sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild | 2 +-
sci-mathematics/petsc/petsc-3.1_p8.ebuild | 2 +-
5 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/sci-mathematics/petsc/petsc-3.1_p4.ebuild b/sci-mathematics/petsc/petsc-3.1_p4.ebuild
index 63609f0..6adee0a 100644
--- a/sci-mathematics/petsc/petsc-3.1_p4.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p4.ebuild
@@ -15,7 +15,7 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE="mpi X cxx debug static-libs fortran doc"
+IUSE="cxx debug doc fortran mpi static-libs X"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
diff --git a/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild b/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
index 56dae98..f3165c2 100644
--- a/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
@@ -15,7 +15,7 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="mpi hypre metis hdf5 X cxx debug static-libs fortran doc"
+IUSE="cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
diff --git a/sci-mathematics/petsc/petsc-3.1_p7.ebuild b/sci-mathematics/petsc/petsc-3.1_p7.ebuild
index 56dae98..f3165c2 100644
--- a/sci-mathematics/petsc/petsc-3.1_p7.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p7.ebuild
@@ -15,7 +15,7 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="mpi hypre metis hdf5 X cxx debug static-libs fortran doc"
+IUSE="cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
diff --git a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
index 7fdce98..a187628 100644
--- a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
@@ -15,7 +15,7 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="mpi hypre metis hdf5 X cxx debug static-libs fortran doc complex-scalars"
+IUSE="complex-scalars cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
diff --git a/sci-mathematics/petsc/petsc-3.1_p8.ebuild b/sci-mathematics/petsc/petsc-3.1_p8.ebuild
index e1bbbcb..aca7776 100644
--- a/sci-mathematics/petsc/petsc-3.1_p8.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p8.ebuild
@@ -15,7 +15,7 @@ SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
LICENSE="petsc"
SLOT="0"
KEYWORDS="~x86 ~amd64"
-IUSE="mpi hypre metis hdf5 X cxx debug static-libs fortran doc"
+IUSE="cxx debug doc fortran hdf5 hypre metis mpi static-libs X"
RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
X? ( x11-libs/libX11 )
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2011-06-21 11:54 Justin Lecher
0 siblings, 0 replies; 59+ messages in thread
From: Justin Lecher @ 2011-06-21 11:54 UTC (permalink / raw
To: gentoo-commits
commit: 7717716180b0160ebdb0809753b9bbf364746653
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 21 11:12:04 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 21 11:12:04 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=77177161
Added fortran-2.eclass support
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-mathematics/petsc/ChangeLog | 5 +++++
sci-mathematics/petsc/metadata.xml | 1 +
sci-mathematics/petsc/petsc-3.1_p4.ebuild | 4 ++--
sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild | 4 ++--
sci-mathematics/petsc/petsc-3.1_p7.ebuild | 2 +-
sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild | 12 ++++++------
sci-mathematics/petsc/petsc-3.1_p8.ebuild | 2 +-
7 files changed, 18 insertions(+), 12 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index 52f6b1a..0604c7f 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 21 Jun 2011; Justin Lecher <jlec@gentoo.org> petsc-3.1_p4.ebuild,
+ petsc-3.1_p5-r2.ebuild, petsc-3.1_p7.ebuild, petsc-3.1_p8.ebuild,
+ petsc-3.1_p8-r1.ebuild, metadata.xml:
+ Added fortran-2.eclass support
+
*petsc-3.1_p8-r1 (19 Apr 2011)
19 Apr 2011; Thomas Kahle <tomka@gentoo.org> +petsc-3.1_p8-r1.ebuild:
diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml
index 15bb0c3..079f8ff 100644
--- a/sci-mathematics/petsc/metadata.xml
+++ b/sci-mathematics/petsc/metadata.xml
@@ -5,5 +5,6 @@
<use>
<flag name="hypre">Use HYPRE (sci-mathematics/hypre) for preconditioning</flag>
<flag name="metis">Use METIS (sci-libs/parmetis) for partitioning</flag>
+ <flag name="complex-scalars">Make scalars complex</flag>
</use>
</pkgmetadata>
diff --git a/sci-mathematics/petsc/petsc-3.1_p4.ebuild b/sci-mathematics/petsc/petsc-3.1_p4.ebuild
index 38d9223..63609f0 100644
--- a/sci-mathematics/petsc/petsc-3.1_p4.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p4.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=3
-inherit flag-o-matic toolchain-funcs
+inherit flag-o-matic fortran-2 toolchain-funcs
MY_P="${PN}-${PV/_/-}"
diff --git a/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild b/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
index 1284a8f..56dae98 100644
--- a/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=3
-inherit flag-o-matic toolchain-funcs
+inherit flag-o-matic fortran-2 toolchain-funcs
MY_P="${PN}-${PV/_/-}"
diff --git a/sci-mathematics/petsc/petsc-3.1_p7.ebuild b/sci-mathematics/petsc/petsc-3.1_p7.ebuild
index b76ae93..56dae98 100644
--- a/sci-mathematics/petsc/petsc-3.1_p7.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p7.ebuild
@@ -4,7 +4,7 @@
EAPI=3
-inherit flag-o-matic toolchain-funcs
+inherit flag-o-matic fortran-2 toolchain-funcs
MY_P="${PN}-${PV/_/-}"
diff --git a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
index 5f2eaa7..7fdce98 100644
--- a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
@@ -4,7 +4,7 @@
EAPI=3
-inherit flag-o-matic toolchain-funcs
+inherit flag-o-matic fortran-2 toolchain-funcs
MY_P="${PN}-${PV/_/-}"
@@ -169,11 +169,11 @@ src_install(){
dosed "s:${PETSC_ARCH}/lib:$(get_libdir):g" /usr/include/"${PN}/${PETSC_ARCH}"/include/petscconf.h
dosed "s:INSTALL_DIR =.*:INSTALL_DIR = /usr:" /usr/include/"${PN}/${PETSC_ARCH}"/conf/petscvariables
- cat > ${T}/99petsc <<EOF
-PETSC_ARCH=${PETSC_ARCH}
-PETSC_DIR=/usr/include/${PN}
-EOF
- doenvd ${T}/99petsc
+ cat >> "${T}"/99petsc <<- EOF
+ PETSC_ARCH=${PETSC_ARCH}
+ PETSC_DIR=/usr/include/${PN}
+ EOF
+ doenvd "${T}"/99petsc
if ! use mpi ; then
insinto /usr/include/"${PN}"/mpiuni
diff --git a/sci-mathematics/petsc/petsc-3.1_p8.ebuild b/sci-mathematics/petsc/petsc-3.1_p8.ebuild
index a7566db..e1bbbcb 100644
--- a/sci-mathematics/petsc/petsc-3.1_p8.ebuild
+++ b/sci-mathematics/petsc/petsc-3.1_p8.ebuild
@@ -4,7 +4,7 @@
EAPI=3
-inherit flag-o-matic toolchain-funcs
+inherit flag-o-matic fortran-2 toolchain-funcs
MY_P="${PN}-${PV/_/-}"
^ permalink raw reply related [flat|nested] 59+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/
@ 2011-04-19 6:44 Thomas Kahle
0 siblings, 0 replies; 59+ messages in thread
From: Thomas Kahle @ 2011-04-19 6:44 UTC (permalink / raw
To: gentoo-commits
commit: a3df8dd67c5c21c011f04fd29e2064f689bbc492
Author: Joshua Rich <joshua.rich <AT> gmail <DOT> com>
AuthorDate: Tue Apr 19 02:33:27 2011 +0000
Commit: Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Tue Apr 19 06:20:33 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a3df8dd6
update for petsc-3.1_p8 from bug 53386
- Adds a new USE flag, complex-scalars that sets the
--with-scalar-type=complex configure script option (to use complex as opposed
to real petsc scalars default).
- Tweaks the install paths of the header files to a hierarchy under
/usr/include/petsc similar to what upstream intends(?)
- Installs fortran header files if USE=fortran.
- Installs some extra files that allow libraries such as slepc
(http://www.grycap.upv.es/slepc/) to be built against petsc. This has allowed
me to create an ebuild the former.
- Installs an environment file that sets PETSC_DIR and PETSC_ARCH for
software that needs these set to build/run (i.e. slepc).
Signed-off-by: Thomas Kahle <tomka <AT> gentoo.org>
---
sci-mathematics/petsc/ChangeLog | 6 +
sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild | 201 ++++++++++++++++++++++++++
2 files changed, 207 insertions(+), 0 deletions(-)
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog
index 5a3533b..52f6b1a 100644
--- a/sci-mathematics/petsc/ChangeLog
+++ b/sci-mathematics/petsc/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*petsc-3.1_p8-r1 (19 Apr 2011)
+
+ 19 Apr 2011; Thomas Kahle <tomka@gentoo.org> +petsc-3.1_p8-r1.ebuild:
+ various improvements to install locations and IUSE=complex scalars
+ patch by Joshua Rich
+
*petsc-3.1_p8 (19 Mar 2011)
19 Mar 2011; Jens-Malte Gottfried <jmgottfried@web.de>
diff --git a/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
new file mode 100644
index 0000000..5f2eaa7
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild
@@ -0,0 +1,201 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit flag-o-matic toolchain-funcs
+
+MY_P="${PN}-${PV/_/-}"
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="http://www.mcs.anl.gov/petsc/petsc-as/"
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
+
+LICENSE="petsc"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="mpi hypre metis hdf5 X cxx debug static-libs fortran doc complex-scalars"
+
+RDEPEND="mpi? ( virtual/mpi[cxx?,fortran?] )
+ X? ( x11-libs/libX11 )
+ virtual/lapack
+ virtual/blas
+ hypre? ( >=sci-mathematics/hypre-2.6.0b[static-libs=] )
+ metis? ( sci-libs/parmetis )
+ hdf5? ( sci-libs/hdf5[!mpi?] )
+"
+
+DEPEND="${RDEPEND}
+ sys-devel/gcc[-nocxx,fortran?]"
+
+S="${WORKDIR}/${MY_P}"
+
+if use hypre; then
+ use cxx || die "hypre needs cxx, please enable cxx or disable hypre use flag"
+ use mpi || die "hypre needs mpi, please enable mpi or disable hypre use flag"
+fi
+
+src_prepare(){
+ epatch "${FILESDIR}/${P}-configure-pic.patch"
+ epatch "${FILESDIR}/${PN}-disable-rpath.patch"
+}
+
+src_configure(){
+ local mylang
+ local myopt
+ local myconf
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ export PETSC_DIR="${S}" || die
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" || die
+
+ myconf[10]="--with-blas-lapack-lib=$(pkg-config --libs lapack)"
+ myconf[11]="CFLAGS=${CFLAGS}"
+ myconf[12]="CXXFLAGS=${CXXFLAGS}"
+ myconf[13]="LDFLAGS=${LDFLAGS}"
+ myconf[14]="--with-windows-graphics=0"
+ myconf[15]="--with-matlab=0"
+ myconf[16]="--with-python=0"
+ myconf[17]="--with-clanguage=${mylang}"
+ myconf[18]="--with-single-library=1"
+ myconf[19]="--with-petsc-arch=${PETSC_ARCH}"
+ myconf[20]="--with-precision=double"
+ myconf[21]="--with-gnu-compilers=1"
+ use amd64 \
+ && myconf[22]="--with-64-bit-pointers=1" \
+ || myconf[22]="--with-64-bit-pointers=0"
+ use cxx \
+ && myconf[23]="--with-c-support=1"
+ use amd64 \
+ && myconf[24]="--with-64-bit-indices=1" \
+ || myconf[24]="--with-64-bit-indices=0"
+
+ if use mpi; then
+ myconf[30]="--with-cc=/usr/bin/mpicc"
+ myconf[31]="--with-cxx=/usr/bin/mpicxx"
+ use fortran && myconf[32]="--with-fc=/usr/bin/mpif77"
+ myconf[33]="--with-mpi=1"
+ myconf[34]="--with-mpi-compilers=1"
+ else
+ myconf[30]="--with-cc=$(tc-getCC)"
+ myconf[31]="--with-cxx=$(tc-getCXX)"
+ use fortran && myconf[32]="--with-fc=$(tc-getF77)"
+ myconf[33]="--with-mpi=0"
+ fi
+
+ use X \
+ && myconf[40]="--with-X=1" \
+ || myconf[40]="--with-X=0"
+ use static-libs \
+ && myconf[41]="--with-shared=0" \
+ || myconf[41]="--with-shared=1"
+ use fortran \
+ && myconf[43]="--with-fortran=1" \
+ || myconf[43]="--with-fortran=0"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ myconf[44]="--with-debugging=1"
+ else
+ myconf[44]="--with-debugging=0"
+ fi
+
+ if use hypre; then
+ # hypre cannot handle 64 bit indices, therefore disabled
+ myconf[24]="--with-64-bit-indices=0"
+ myconf[52]="--with-hypre=1"
+ myconf[53]="--with-hypre-include=/usr/include/hypre"
+ use static-libs \
+ && myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.a" \
+ || myconf[54]="--with-hypre-lib=/usr/$(get_libdir)/libHYPRE.so"
+ else
+ myconf[52]="--with-hypre=0"
+ fi
+
+ if use metis; then
+ # parmetis cannot handle 64 bit indices, therefore disabled
+ myconf[24]="--with-64-bit-indices=0"
+ myconf[61]="--with-parmetis=1"
+ myconf[62]="--with-parmetis-include=/usr/include/parmetis"
+ myconf[63]="--with-parmetis-lib=/usr/$(get_libdir)/libparmetis.so"
+ else
+ myconf[61]="--with-parmetis=0"
+ fi
+
+ if use hdf5; then
+ myconf[71]="--with-hdf5=1"
+ myconf[72]="--with-hdf5-include=/usr/include"
+ myconf[73]="--with-hdf5-lib=/usr/$(get_libdir)/libhdf5.so"
+ else
+ myconf[71]="--with-hdf5=0"
+ fi
+
+ myconf[81]="--with-scotch=0"
+
+ if use complex-scalars; then
+ # cannot enable C support with complex scalars
+ # (cannot even set configure option to zero!)
+ myconf[23]=""
+ myconf[82]="--with-scalar-type=complex"
+ fi
+
+ einfo "Configure options: ${myconf[@]}"
+ python "${S}/config/configure.py" "${myconf[@]}" \
+ || die "PETSc configuration failed"
+}
+
+src_install(){
+ insinto /usr/include/"${PN}"
+ doins "${S}"/include/*.h "${S}"/include/*.hh
+ insinto /usr/include/"${PN}/${PETSC_ARCH}"/include
+ doins "${S}/${PETSC_ARCH}"/include/*
+ if use fortran; then
+ insinto /usr/include/"${PN}"/finclude
+ doins "${S}"/include/finclude/*.h
+ fi
+ insinto /usr/include/"${PN}"/conf
+ doins "${S}"/conf/{variables,rules,test}
+ insinto /usr/include/"${PN}/${PETSC_ARCH}"/conf
+ doins "${S}/${PETSC_ARCH}"/conf/{petscrules,petscvariables,RDict.db}
+
+ insinto /usr/include/"${PN}"/private
+ doins "${S}"/include/private/*.h
+
+ dosed "s:${S}:/usr:g" /usr/include/"${PN}/${PETSC_ARCH}"/include/petscconf.h
+ dosed "s:${PETSC_ARCH}/lib:$(get_libdir):g" /usr/include/"${PN}/${PETSC_ARCH}"/include/petscconf.h
+ dosed "s:INSTALL_DIR =.*:INSTALL_DIR = /usr:" /usr/include/"${PN}/${PETSC_ARCH}"/conf/petscvariables
+
+ cat > ${T}/99petsc <<EOF
+PETSC_ARCH=${PETSC_ARCH}
+PETSC_DIR=/usr/include/${PN}
+EOF
+ doenvd ${T}/99petsc
+
+ if ! use mpi ; then
+ insinto /usr/include/"${PN}"/mpiuni
+ doins "${S}"/include/mpiuni/*.h
+ fi
+
+ if use doc ; then
+ dodoc docs/manual.pdf
+ dohtml -r docs/*.html docs/changes docs/manualpages
+ fi
+
+ use static-libs \
+ && dolib.a "${S}/${PETSC_ARCH}"/lib/*.a \
+ || dolib.so "${S}/${PETSC_ARCH}"/lib/*.so
+}
+
+pkg_postinst() {
+ elog "The petsc ebuild is still under development."
+ elog "Help us improve the ebuild in:"
+ elog "http://bugs.gentoo.org/show_bug.cgi?id=53386"
+ elog "This ebuild is known to have parallel build issues, "
+ elog "hopefully resolved by upstream soon."
+ elog "Another problem is that you can break this package by"
+ elog "switching your mpi implementation without rebuild petsc."
+}
^ permalink raw reply related [flat|nested] 59+ messages in thread
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2012-06-09 6:35 Jens-Malte Gottfried
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2012-03-23 18:33 Jens-Malte Gottfried
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