* [gentoo-commits] proj/sci:master commit in: sci-biology/samstat/
@ 2014-03-16 19:03 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2014-03-16 19:03 UTC (permalink / raw
To: gentoo-commits
commit: 8862278ef5080d160bf16ccfe8a8a8c6ac45c1df
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 16 19:02:07 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 16 19:02:07 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8862278e
sci-biology/samstat: new package
Package-Manager: portage-2.2.7
---
sci-biology/samstat/ChangeLog | 9 +++++++++
sci-biology/samstat/metadata.xml | 9 +++++++++
sci-biology/samstat/samstat-20130708.ebuild | 29 +++++++++++++++++++++++++++++
3 files changed, 47 insertions(+)
diff --git a/sci-biology/samstat/ChangeLog b/sci-biology/samstat/ChangeLog
new file mode 100644
index 0000000..10d5f58
--- /dev/null
+++ b/sci-biology/samstat/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/samstat
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*samstat-20130708 (16 Mar 2014)
+
+ 16 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +samstat-20130708.ebuild:
+ sci-biology/samstat: new package
diff --git a/sci-biology/samstat/metadata.xml b/sci-biology/samstat/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/samstat/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/samstat/samstat-20130708.ebuild b/sci-biology/samstat/samstat-20130708.ebuild
new file mode 100644
index 0000000..c694799
--- /dev/null
+++ b/sci-biology/samstat/samstat-20130708.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils
+
+DESCRIPTION="Show statistics of BAM/SAM file contents (error profiles, nucleotide composition, base quals, length distribution)"
+HOMEPAGE="http://samstat.sourceforge.net"
+SRC_URI="http://sourceforge.net/projects/samstat/files/samstat.tgz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${PN}"/src
+
+src_compile(){
+ emake
+}
+
+src_install(){
+ dobin samstat
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/samstat/
@ 2014-03-22 9:45 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2014-03-22 9:45 UTC (permalink / raw
To: gentoo-commits
commit: 34151feaa9a7a76e95c5e1cc72fabc0d52480276
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 16 19:02:07 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Mar 22 09:44:40 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=34151fea
sci-biology/samstat: new package
Package-Manager: portage-2.2.7
---
sci-biology/samstat/ChangeLog | 9 +++++++++
sci-biology/samstat/metadata.xml | 9 +++++++++
sci-biology/samstat/samstat-20130708.ebuild | 29 +++++++++++++++++++++++++++++
3 files changed, 47 insertions(+)
diff --git a/sci-biology/samstat/ChangeLog b/sci-biology/samstat/ChangeLog
new file mode 100644
index 0000000..10d5f58
--- /dev/null
+++ b/sci-biology/samstat/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/samstat
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*samstat-20130708 (16 Mar 2014)
+
+ 16 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +samstat-20130708.ebuild:
+ sci-biology/samstat: new package
diff --git a/sci-biology/samstat/metadata.xml b/sci-biology/samstat/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/samstat/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/samstat/samstat-20130708.ebuild b/sci-biology/samstat/samstat-20130708.ebuild
new file mode 100644
index 0000000..c694799
--- /dev/null
+++ b/sci-biology/samstat/samstat-20130708.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils
+
+DESCRIPTION="Show statistics of BAM/SAM file contents (error profiles, nucleotide composition, base quals, length distribution)"
+HOMEPAGE="http://samstat.sourceforge.net"
+SRC_URI="http://sourceforge.net/projects/samstat/files/samstat.tgz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${PN}"/src
+
+src_compile(){
+ emake
+}
+
+src_install(){
+ dobin samstat
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/samstat/
@ 2014-09-16 17:50 Christoph Junghans
0 siblings, 0 replies; 5+ messages in thread
From: Christoph Junghans @ 2014-09-16 17:50 UTC (permalink / raw
To: gentoo-commits
commit: 5729da1bbe820e826de6419d648bfb05f877106b
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 17:47:38 2014 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 17:47:38 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5729da1b
fixed DESCRIPTION
Package-Manager: portage-2.2.8-r1
---
sci-biology/samstat/ChangeLog | 3 +++
sci-biology/samstat/samstat-20130708.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-biology/samstat/ChangeLog b/sci-biology/samstat/ChangeLog
index 10d5f58..cc542c3 100644
--- a/sci-biology/samstat/ChangeLog
+++ b/sci-biology/samstat/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> samstat-20130708.ebuild:
+ fixed DESCRIPTION
+
*samstat-20130708 (16 Mar 2014)
16 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
diff --git a/sci-biology/samstat/samstat-20130708.ebuild b/sci-biology/samstat/samstat-20130708.ebuild
index c694799..f472163 100644
--- a/sci-biology/samstat/samstat-20130708.ebuild
+++ b/sci-biology/samstat/samstat-20130708.ebuild
@@ -6,7 +6,7 @@ EAPI=5
inherit eutils
-DESCRIPTION="Show statistics of BAM/SAM file contents (error profiles, nucleotide composition, base quals, length distribution)"
+DESCRIPTION="Show statistics of BAM/SAM (error profiles, nucleotide composition, base quals, len. distribution)"
HOMEPAGE="http://samstat.sourceforge.net"
SRC_URI="http://sourceforge.net/projects/samstat/files/samstat.tgz"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/samstat/
@ 2018-04-22 18:40 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2018-04-22 18:40 UTC (permalink / raw
To: gentoo-commits
commit: 369e4e12dd47bb8c6aa2d1e69c2501edbe4bb7bf
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 22 18:40:28 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 22 18:40:28 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=369e4e12
sci-biology/samstat: version bump
Package-Manager: Portage-2.3.28, Repoman-2.3.9
.../{samstat-20130708.ebuild => samstat-1.5.1.ebuild} | 16 +++-------------
1 file changed, 3 insertions(+), 13 deletions(-)
diff --git a/sci-biology/samstat/samstat-20130708.ebuild b/sci-biology/samstat/samstat-1.5.1.ebuild
similarity index 56%
rename from sci-biology/samstat/samstat-20130708.ebuild
rename to sci-biology/samstat/samstat-1.5.1.ebuild
index 9d3880428..1ea4ffdde 100644
--- a/sci-biology/samstat/samstat-20130708.ebuild
+++ b/sci-biology/samstat/samstat-1.5.1.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=6
inherit eutils
DESCRIPTION="Statistics of BAM/SAM files"
HOMEPAGE="http://samstat.sourceforge.net"
-SRC_URI="http://sourceforge.net/projects/samstat/files/samstat.tgz"
+SRC_URI="http://sourceforge.net/projects/samstat/files/${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
@@ -16,13 +16,3 @@ IUSE=""
DEPEND=""
RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/"${PN}"/src
-
-src_compile(){
- default
-}
-
-src_install(){
- dobin samstat
-}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/samstat/
@ 2020-01-10 16:09 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2020-01-10 16:09 UTC (permalink / raw
To: gentoo-commits
commit: b4fcf5069fd98b11d2a5aa6fb452d7d3ba5a1e05
Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Fri Jan 10 16:08:09 2020 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan 10 16:08:46 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b4fcf506
sci-biology/samstat: add missing dependency
Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>
sci-biology/samstat/samstat-1.5.1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/samstat/samstat-1.5.1.ebuild b/sci-biology/samstat/samstat-1.5.1.ebuild
index 1ea4ffdde..af0f76cb2 100644
--- a/sci-biology/samstat/samstat-1.5.1.ebuild
+++ b/sci-biology/samstat/samstat-1.5.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -14,5 +14,5 @@ SLOT="0"
KEYWORDS="~amd64"
IUSE=""
-DEPEND=""
+DEPEND="sci-biology/samtools"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
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