From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 220E11382C5 for ; Thu, 12 Apr 2018 08:49:45 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E859DE08C0; Thu, 12 Apr 2018 08:49:42 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id C24F1E08C0 for ; Thu, 12 Apr 2018 08:49:42 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C0975335C07 for ; Thu, 12 Apr 2018 08:49:40 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id A6333275 for ; Thu, 12 Apr 2018 08:49:38 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1523522965.3a1f44b97d5e3f2579efe5b83c93cf3114835c84.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/genometools/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/genometools/genometools-1.5.10.ebuild X-VCS-Directories: sci-biology/genometools/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 3a1f44b97d5e3f2579efe5b83c93cf3114835c84 X-VCS-Branch: master Date: Thu, 12 Apr 2018 08:49:38 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 57bc7b94-7a13-43d9-90c1-529145521026 X-Archives-Hash: 2f87351f750cdf6433f7ffaafc995979 commit: 3a1f44b97d5e3f2579efe5b83c93cf3114835c84 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Thu Apr 12 08:49:25 2018 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Apr 12 08:49:25 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3a1f44b9 sci-biology/genometools: disable building using bundled libs The build packaging system is suboptimal. Hand-edit the Makefile to force use of shared libs from system-wide. This brings us to a non-functional package because two lua-based packages are not yet in the tree. https://github.com/genometools/genometools/issues/742 https://github.com/genometools/genometools/pull/748 Package-Manager: Portage-2.3.27, Repoman-2.3.9 sci-biology/genometools/genometools-1.5.10.ebuild | 26 +++++++++++++++++++---- 1 file changed, 22 insertions(+), 4 deletions(-) diff --git a/sci-biology/genometools/genometools-1.5.10.ebuild b/sci-biology/genometools/genometools-1.5.10.ebuild index 23fe474e2..026eabc48 100644 --- a/sci-biology/genometools/genometools-1.5.10.ebuild +++ b/sci-biology/genometools/genometools-1.5.10.ebuild @@ -9,16 +9,34 @@ SRC_URI="http://genometools.org/pub/${P}.tar.gz" LICENSE="ICS" SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" +KEYWORDS="" +IUSE="cairo" DEPEND=" dev-libs/glib x11-libs/pango - x11-libs/cairo" + cairo? ( x11-libs/cairo ) + sci-biology/samtools:0.1-legacy + dev-db/sqlite:3 + dev-lang/lua + dev-lua/lpeg + dev-lua/luafilesystem + dev-libs/tre" +# http://keplerproject.github.io/md5/ +# http://keplerproject.org/cgilua RDEPEND="${DEPEND}" src_prepare(){ - sed -e "s#/usr/local#"${EPREFIX}"/usr#" -i Makefile || die + sed -e "s#/usr/local#"${EPREFIX}"/usr#g" -i Makefile || die + sed -e "s#/usr/include/bam#${EPREFIX}/usr/include/bam-0.1-legacy#" -i Makefile || die + sed -e "s#-lbam#-lbam-0.1-legacy#" -i Makefile || die eapply_user } + +src_compile(){ + local myemakeargs=( useshared=yes ) + ! use cairo && myemakeargs+=( cairo=no ) + use x86 && myemakeargs+=( 32bit=yes ) + use amd64 && myemakeargs+=( 64bit=yes ) + emake ${myemakeargs} +}