* [gentoo-commits] proj/sci:master commit in: sci-biology/genepop/
@ 2014-01-06 17:18 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2014-01-06 17:18 UTC (permalink / raw
To: gentoo-commits
commit: 2d443cdf793ac3a5ae7f3b1fb8eb0df7a3579a5b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 6 15:55:16 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 6 15:55:16 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2d443cdf
sci-biology/genepop: Punt base.eclass: version bump
Package-Manager: portage-2.2.8
---
sci-biology/genepop/ChangeLog | 6 ++++-
...{genepop-4.0.10.ebuild => genepop-4.2.1.ebuild} | 31 +++++++++-------------
sci-biology/genepop/metadata.xml | 10 +++----
3 files changed, 23 insertions(+), 24 deletions(-)
diff --git a/sci-biology/genepop/ChangeLog b/sci-biology/genepop/ChangeLog
index 7490dc2..9eee0f1 100644
--- a/sci-biology/genepop/ChangeLog
+++ b/sci-biology/genepop/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-biology/genepop
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> -genepop-4.0.10.ebuild,
+ +genepop-4.2.1.ebuild, metadata.xml:
+ Punt base.eclass: version bump
+
26 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
New package, ebuild written by me
diff --git a/sci-biology/genepop/genepop-4.0.10.ebuild b/sci-biology/genepop/genepop-4.2.1.ebuild
similarity index 50%
rename from sci-biology/genepop/genepop-4.0.10.ebuild
rename to sci-biology/genepop/genepop-4.2.1.ebuild
index d034a34..ef61b20 100644
--- a/sci-biology/genepop/genepop-4.0.10.ebuild
+++ b/sci-biology/genepop/genepop-4.2.1.ebuild
@@ -1,14 +1,14 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r1.ebuild,v 1.2 2009/08/19 08:00:26 weaver Exp $
-EAPI="2"
+EAPI=5
-inherit base toolchain-funcs
+inherit cmake-utils
DESCRIPTION="Population genetics analysis"
HOMEPAGE="http://genepop.curtin.edu.au/ http://kimura.univ-montp2.fr/~rousset/Genepop.htm"
-SRC_URI="mirror://gentoo/${P}.zip"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz"
LICENSE="CeCILL-2"
SLOT="0"
@@ -20,20 +20,15 @@ RDEPEND=""
S="${WORKDIR}"
-src_unpack() {
- base_src_unpack
- unzip -d "${S}" sources.zip
- mkdir "${S}/examples"
- unzip -d "${S}/examples" examples.zip
-}
+src_prepare() {
+ cat >> CMakeLists.txt <<- EOF
+ cmake_minimum_required (VERSION 2.6)
+ project (${PN} CXX)
-src_compile() {
- $(tc-getCXX) ${CFLAGS} -DNO_MODULES -o Genepop GenepopS.cpp -O3 || die
-}
+ set(CMAKE_CXX_FLAGS "\${CMAKE_CXX_FLAGS} -DNO_MODULES")
-src_install() {
- dobin Genepop || die
- insinto /usr/share/${PN}
- doins -r examples || die
- dodoc Genepop.pdf
+ add_executable(Genepop GenepopS.cpp)
+ install(TARGETS Genepop DESTINATION bin)
+ EOF
+ cmake-utils_src_prepare
}
diff --git a/sci-biology/genepop/metadata.xml b/sci-biology/genepop/metadata.xml
index 3302123..fc7c769 100644
--- a/sci-biology/genepop/metadata.xml
+++ b/sci-biology/genepop/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/genepop/
@ 2015-04-14 17:49 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-04-14 17:49 UTC (permalink / raw
To: gentoo-commits
commit: 78518dc76e70a2896f073974d0d42c7509a298d8
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 29 15:02:15 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Apr 14 17:49:09 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=78518dc7
sci-biology/genepop: Drop unnecessary *DEPEND
Package-Manager: portage-2.2.18
sci-biology/genepop/ChangeLog | 6 ++++--
sci-biology/genepop/genepop-4.2.1.ebuild | 5 +----
2 files changed, 5 insertions(+), 6 deletions(-)
diff --git a/sci-biology/genepop/ChangeLog b/sci-biology/genepop/ChangeLog
index 9eee0f1..d9ad2a5 100644
--- a/sci-biology/genepop/ChangeLog
+++ b/sci-biology/genepop/ChangeLog
@@ -1,11 +1,13 @@
# ChangeLog for sci-biology/genepop
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 29 Mar 2015; Justin Lecher <jlec@gentoo.org> genepop-4.2.1.ebuild:
+ sci-biology/genepop: Drop unnecessary *DEPEND
+
06 Jan 2014; Justin Lecher <jlec@gentoo.org> -genepop-4.0.10.ebuild,
+genepop-4.2.1.ebuild, metadata.xml:
Punt base.eclass: version bump
26 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
New package, ebuild written by me
-
diff --git a/sci-biology/genepop/genepop-4.2.1.ebuild b/sci-biology/genepop/genepop-4.2.1.ebuild
index 41647d0..73d8234 100644
--- a/sci-biology/genepop/genepop-4.2.1.ebuild
+++ b/sci-biology/genepop/genepop-4.2.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -15,9 +15,6 @@ SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
-DEPEND="app-arch/unzip"
-RDEPEND=""
-
S="${WORKDIR}"
src_prepare() {
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/genepop/
@ 2017-02-24 13:01 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2017-02-24 13:01 UTC (permalink / raw
To: gentoo-commits
commit: 244b13c92e071701a929875ae77cd5213785e1d8
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Feb 24 13:00:51 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Feb 24 13:00:51 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=244b13c9
sci-biology/genepop: version bump, install PDF doc
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/genepop/genepop-4.6.ebuild | 41 ++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/sci-biology/genepop/genepop-4.6.ebuild b/sci-biology/genepop/genepop-4.6.ebuild
new file mode 100644
index 000000000..e42f57c82
--- /dev/null
+++ b/sci-biology/genepop/genepop-4.6.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="Population genetics analysis"
+HOMEPAGE="http://genepop.curtin.edu.au/ http://kimura.univ-montp2.fr/~rousset/Genepop.htm"
+SRC_URI="http://kimura.univ-montp2.fr/%7Erousset/GenepopV4.tar.gz -> ${P}.tar.gz
+ http://kimura.univ-montp2.fr/%7Erousset/Genepop.pdf -> ${PN}.pdf"
+
+LICENSE="CeCILL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+S="${WORKDIR}"
+
+src_prepare() {
+ gzip -dc sources.tar.gz | tar xf - || die
+ mv Cpp/* . || die
+ rmdir Cpp || die
+ cat >> CMakeLists.txt <<- EOF
+ cmake_minimum_required (VERSION 2.6)
+ project (${PN} CXX)
+
+ set(CMAKE_CXX_FLAGS "\${CMAKE_CXX_FLAGS} -DNO_MODULES")
+
+ add_executable(Genepop GenepopS.cpp)
+ install(TARGETS Genepop DESTINATION bin)
+ EOF
+ cmake-utils_src_prepare
+ default
+}
+
+src_install(){
+ cmake-utils_src_install
+ dodoc "${DISTDIR}"/"${PN}".pdf
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/genepop/
@ 2018-04-01 16:16 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2018-04-01 16:16 UTC (permalink / raw
To: gentoo-commits
commit: 43678bc9223604dc05063d14c025edcb802c0b4d
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 1 16:15:44 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 1 16:15:44 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=43678bc9
sci-biology/genepop: version bump
Upstream does not version the release tarballs, now 4.7 is being
actually exposed on the website.
Package-Manager: Portage-2.3.27, Repoman-2.3.9
.../genepop/{genepop-4.6.ebuild => genepop-4.7.ebuild} | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/sci-biology/genepop/genepop-4.6.ebuild b/sci-biology/genepop/genepop-4.7.ebuild
similarity index 77%
rename from sci-biology/genepop/genepop-4.6.ebuild
rename to sci-biology/genepop/genepop-4.7.ebuild
index 22605e6cd..c70f60dba 100644
--- a/sci-biology/genepop/genepop-4.6.ebuild
+++ b/sci-biology/genepop/genepop-4.7.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -7,8 +7,7 @@ inherit cmake-utils
DESCRIPTION="Population genetics analysis"
HOMEPAGE="http://genepop.curtin.edu.au/ http://kimura.univ-montp2.fr/~rousset/Genepop.htm"
-SRC_URI="http://kimura.univ-montp2.fr/%7Erousset/GenepopV4.tar.gz -> ${P}.tar.gz
- http://kimura.univ-montp2.fr/%7Erousset/Genepop.pdf -> ${PN}.pdf"
+SRC_URI="http://kimura.univ-montp2.fr/%7Erousset/GenepopV4.tar.gz -> ${P}.tar.gz"
LICENSE="CeCILL-2"
SLOT="0"
@@ -19,8 +18,7 @@ S="${WORKDIR}"
src_prepare() {
gzip -dc sources.tar.gz | tar xf - || die
- mv Cpp/* . || die
- rmdir Cpp || die
+ rm -f exe.zip || die
cat >> CMakeLists.txt <<- EOF
cmake_minimum_required (VERSION 2.6)
project (${PN} CXX)
@@ -36,5 +34,8 @@ src_prepare() {
src_install(){
cmake-utils_src_install
- dodoc "${DISTDIR}"/"${PN}".pdf
+ mv "${ED}"/usr/bin/Genepop "${ED}"/usr/bin/genepop || die
+ newdoc Genepop.pdf genepop.pdf
+ insinto /usr/share/"${PN}"
+ doins examples.zip
}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/genepop/
@ 2018-04-01 16:22 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2018-04-01 16:22 UTC (permalink / raw
To: gentoo-commits
commit: e3dd78cf8842c65c4db4bd3ff4b395bbcc8291a1
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 1 16:22:10 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 1 16:22:10 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e3dd78cf
sci-biology/genepop: switch to https
Package-Manager: Portage-2.3.27, Repoman-2.3.9
sci-biology/genepop/genepop-4.7.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/genepop/genepop-4.7.ebuild b/sci-biology/genepop/genepop-4.7.ebuild
index c70f60dba..9430e7987 100644
--- a/sci-biology/genepop/genepop-4.7.ebuild
+++ b/sci-biology/genepop/genepop-4.7.ebuild
@@ -6,8 +6,8 @@ EAPI=6
inherit cmake-utils
DESCRIPTION="Population genetics analysis"
-HOMEPAGE="http://genepop.curtin.edu.au/ http://kimura.univ-montp2.fr/~rousset/Genepop.htm"
-SRC_URI="http://kimura.univ-montp2.fr/%7Erousset/GenepopV4.tar.gz -> ${P}.tar.gz"
+HOMEPAGE="https://genepop.curtin.edu.au/ https://kimura.univ-montp2.fr/~rousset/Genepop.htm"
+SRC_URI="https://kimura.univ-montp2.fr/%7Erousset/GenepopV4.tar.gz -> ${P}.tar.gz"
LICENSE="CeCILL-2"
SLOT="0"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/genepop/
@ 2021-01-19 15:49 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2021-01-19 15:49 UTC (permalink / raw
To: gentoo-commits
commit: 49636de7c3453c0a6bcae067996f02aa7097dede
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 15:49:43 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 15:49:43 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=49636de7
sci-biology/genepop: fix fetch, cmake-utils --> cmake
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/genepop/genepop-4.2.1.ebuild | 30 ------------------------------
sci-biology/genepop/genepop-4.7.ebuild | 11 +++++------
2 files changed, 5 insertions(+), 36 deletions(-)
diff --git a/sci-biology/genepop/genepop-4.2.1.ebuild b/sci-biology/genepop/genepop-4.2.1.ebuild
deleted file mode 100644
index 2e1d48a45..000000000
--- a/sci-biology/genepop/genepop-4.2.1.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit cmake-utils
-
-DESCRIPTION="Population genetics analysis"
-HOMEPAGE="https://genepop.curtin.edu.au/ https://kimura.univ-montp2.fr/~rousset/Genepop.htm"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz"
-
-LICENSE="CeCILL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-S="${WORKDIR}"
-
-src_prepare() {
- cat >> CMakeLists.txt <<- EOF
- cmake_minimum_required (VERSION 2.6)
- project (${PN} CXX)
-
- set(CMAKE_CXX_FLAGS "\${CMAKE_CXX_FLAGS} -DNO_MODULES")
-
- add_executable(Genepop GenepopS.cpp)
- install(TARGETS Genepop DESTINATION bin)
- EOF
- cmake-utils_src_prepare
-}
diff --git a/sci-biology/genepop/genepop-4.7.ebuild b/sci-biology/genepop/genepop-4.7.ebuild
index 9430e7987..b3ed5bfc3 100644
--- a/sci-biology/genepop/genepop-4.7.ebuild
+++ b/sci-biology/genepop/genepop-4.7.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
-inherit cmake-utils
+inherit cmake
DESCRIPTION="Population genetics analysis"
HOMEPAGE="https://genepop.curtin.edu.au/ https://kimura.univ-montp2.fr/~rousset/Genepop.htm"
@@ -28,12 +28,11 @@ src_prepare() {
add_executable(Genepop GenepopS.cpp)
install(TARGETS Genepop DESTINATION bin)
EOF
- cmake-utils_src_prepare
- default
+ cmake_src_prepare
}
src_install(){
- cmake-utils_src_install
+ cmake_src_install
mv "${ED}"/usr/bin/Genepop "${ED}"/usr/bin/genepop || die
newdoc Genepop.pdf genepop.pdf
insinto /usr/share/"${PN}"
^ permalink raw reply related [flat|nested] 6+ messages in thread
end of thread, other threads:[~2021-01-19 15:49 UTC | newest]
Thread overview: 6+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2018-04-01 16:16 [gentoo-commits] proj/sci:master commit in: sci-biology/genepop/ Martin Mokrejs
-- strict thread matches above, loose matches on Subject: below --
2021-01-19 15:49 Andrew Ammerlaan
2018-04-01 16:22 Martin Mokrejs
2017-02-24 13:01 Martin Mokrejs
2015-04-14 17:49 Justin Lecher
2014-01-06 17:18 Justin Lecher
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox