From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 7F9BF1382C5 for ; Thu, 25 Jan 2018 19:52:47 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id C6994E0975; Thu, 25 Jan 2018 19:52:46 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id A32B7E0975 for ; Thu, 25 Jan 2018 19:52:45 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 770F3335C3C for ; Thu, 25 Jan 2018 19:52:44 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id BBF651B0 for ; Thu, 25 Jan 2018 19:52:42 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1516909947.2a587647f03490b80841358dfed7deb62cfe3097.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/sga/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/sga/sga-9999.ebuild X-VCS-Directories: sci-biology/sga/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 2a587647f03490b80841358dfed7deb62cfe3097 X-VCS-Branch: master Date: Thu, 25 Jan 2018 19:52:42 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: a5b76b2e-fabe-4e21-aeff-1c32ce2b0acd X-Archives-Hash: d30a677997e75c1d264987173481c3ae commit: 2a587647f03490b80841358dfed7deb62cfe3097 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Thu Jan 25 19:52:27 2018 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Jan 25 19:52:27 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2a587647 sci-biology/sga: add missing RDEPEND, more comments Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/sga/sga-9999.ebuild | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/sci-biology/sga/sga-9999.ebuild b/sci-biology/sga/sga-9999.ebuild index 38212a3e2..8ec029f94 100644 --- a/sci-biology/sga/sga-9999.ebuild +++ b/sci-biology/sga/sga-9999.ebuild @@ -19,6 +19,7 @@ DEPEND="dev-cpp/sparsehash sys-libs/zlib jemalloc? ( dev-libs/jemalloc )" RDEPEND="${DEPEND} + sci-biology/abyss python? ( sci-biology/pysam sci-biology/ruffus )" @@ -30,7 +31,14 @@ src_configure(){ } src_compile(){ - cd src || die + # https://github.com/AlgoLab/FastStringGraph/issues/1#issuecomment-345999596 + # https://github.com/jts/sga/issues/106 + # https://github.com/jts/sga/pull/110 + # https://github.com/jts/sga/issues/108 + # + # other unreviewed patches: + # https://github.com/jts/sga/issues/96 + cd src || die "Try -atd=g++-98, try gcc-5 or -std=c++03" default }