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From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/sga/
Date: Thu, 25 Jan 2018 19:52:42 +0000 (UTC)	[thread overview]
Message-ID: <1516909947.2a587647f03490b80841358dfed7deb62cfe3097.mmokrejs@gentoo> (raw)

commit:     2a587647f03490b80841358dfed7deb62cfe3097
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 25 19:52:27 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan 25 19:52:27 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2a587647

sci-biology/sga: add missing RDEPEND, more comments

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/sga/sga-9999.ebuild | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/sci-biology/sga/sga-9999.ebuild b/sci-biology/sga/sga-9999.ebuild
index 38212a3e2..8ec029f94 100644
--- a/sci-biology/sga/sga-9999.ebuild
+++ b/sci-biology/sga/sga-9999.ebuild
@@ -19,6 +19,7 @@ DEPEND="dev-cpp/sparsehash
 	sys-libs/zlib
 	jemalloc? ( dev-libs/jemalloc )"
 RDEPEND="${DEPEND}
+	sci-biology/abyss
 	python? ( sci-biology/pysam
 			sci-biology/ruffus )"
 
@@ -30,7 +31,14 @@ src_configure(){
 }
 
 src_compile(){
-	cd src || die
+	# https://github.com/AlgoLab/FastStringGraph/issues/1#issuecomment-345999596
+	# https://github.com/jts/sga/issues/106
+	# https://github.com/jts/sga/pull/110
+	# https://github.com/jts/sga/issues/108
+	#
+	# other unreviewed patches:
+	# https://github.com/jts/sga/issues/96
+	cd src || die "Try -atd=g++-98, try gcc-5 or -std=c++03"
 	default
 }
 


             reply	other threads:[~2018-01-25 19:52 UTC|newest]

Thread overview: 13+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2018-01-25 19:52 Martin Mokrejs [this message]
  -- strict thread matches above, loose matches on Subject: below --
2021-03-06 14:25 [gentoo-commits] proj/sci:master commit in: sci-biology/sga/ Andrew Ammerlaan
2020-01-10 16:12 Martin Mokrejs
2018-01-20 21:37 Martin Mokrejs
2018-01-10 15:47 Martin Mokrejs
2018-01-10 14:56 Martin Mokrejs
2016-04-10 11:30 Martin Mokrejs
2016-04-10  9:58 Martin Mokrejs
2016-04-08 19:12 Martin Mokrejs
2015-06-05 11:20 Justin Lecher
2015-02-10 14:37 Justin Lecher
2014-09-05 15:24 Jauhien Piatlicki
2014-03-24  1:16 Martin Mokrejs

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