[gentoo-commits] proj/sci:master commit in: sci-biology/yaha/

[gentoo-commits] proj/sci:master commit in: sci-biology/yaha/

[Martin Mokrejs]

commit:     8abbc1e1b14cffd918be1051941fb0c90ac3db79
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Feb 19 17:20:03 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Feb 19 17:20:03 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8abbc1e1

sci-biology/yaha: new package, does not respect CFLAGS/CXXFLAGS yet

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/yaha/metadata.xml     | 12 ++++++++++++
 sci-biology/yaha/yaha-9999.ebuild | 28 ++++++++++++++++++++++++++++
 2 files changed, 40 insertions(+)

diff --git a/sci-biology/yaha/metadata.xml b/sci-biology/yaha/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/yaha/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/yaha/yaha-9999.ebuild b/sci-biology/yaha/yaha-9999.ebuild
new file mode 100644
index 000000000..699e0276e
--- /dev/null
+++ b/sci-biology/yaha/yaha-9999.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit git-r3
+
+DESCRIPTION="DNA mapper for single-end reads to detect structural variants (SV)"
+HOMEPAGE="https://github.com/GregoryFaust/yaha"
+EGIT_REPO_URI="git://github.com/GregoryFaust/yaha.git"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+# TODO: respect CFLAGS/CXXFLAGS
+# https://github.com/GregoryFaust/yaha/issues/5
+
+src_install(){
+	dobin bin/yaha
+	dodoc YAHA_User_Guide.0.1.83.pdf
+	dodoc README.md
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/yaha/

[Martin Mokrejs]

commit:     203b4131883bdae36f4bb7261f35ec06a6de5c75
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jan 20 21:26:04 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jan 20 21:26:04 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=203b4131

sci-biology/yaha: switch git:// to https://

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/yaha/yaha-9999.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/yaha/yaha-9999.ebuild b/sci-biology/yaha/yaha-9999.ebuild
index d0ce2d336..88a6dcfa6 100644
--- a/sci-biology/yaha/yaha-9999.ebuild
+++ b/sci-biology/yaha/yaha-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -7,7 +7,7 @@ inherit flag-o-matic git-r3 toolchain-funcs
 
 DESCRIPTION="DNA mapper for single-end reads to detect structural variants (SV)"
 HOMEPAGE="https://github.com/GregoryFaust/yaha"
-EGIT_REPO_URI="git://github.com/GregoryFaust/yaha.git"
+EGIT_REPO_URI="https://github.com/GregoryFaust/yaha.git"
 
 LICENSE="MIT"
 SLOT="0"

[gentoo-commits] proj/sci:master commit in: sci-biology/yaha/

[Andrew Ammerlaan]

commit:     27f1f9758367884e43953b29e9979c1823498edc
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 16:13:11 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 16:13:11 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=27f1f975

sci-biology/yaha: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/yaha/yaha-9999.ebuild | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/sci-biology/yaha/yaha-9999.ebuild b/sci-biology/yaha/yaha-9999.ebuild
index 88a6dcfa6..f24827d3a 100644
--- a/sci-biology/yaha/yaha-9999.ebuild
+++ b/sci-biology/yaha/yaha-9999.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 inherit flag-o-matic git-r3 toolchain-funcs
 
@@ -12,7 +12,6 @@ EGIT_REPO_URI="https://github.com/GregoryFaust/yaha.git"
 LICENSE="MIT"
 SLOT="0"
 KEYWORDS=""
-IUSE=""
 
 PATCHES=(
 	"${FILESDIR}"/${P}-fpermissive.patch