[gentoo-commits] proj/sci:master commit in: sci-biology/Sibelia/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     f01d815ad584ba9fba254dadefb663bce8eeb010
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan 19 22:53:13 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan 19 22:53:13 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f01d815a

sci-biology/Sibelia: new package

It installs despite the fact it contains bundled
3rd-party stuff. I will contact upstream and see
whether they will manage to unbundle the many libs
and apps.

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/Sibelia/Sibelia-9999.ebuild | 31 +++++++++++++++++++++++++++++++
 sci-biology/Sibelia/metadata.xml        | 12 ++++++++++++
 2 files changed, 43 insertions(+)

diff --git a/sci-biology/Sibelia/Sibelia-9999.ebuild b/sci-biology/Sibelia/Sibelia-9999.ebuild
new file mode 100644
index 000000000..cfaae8765
--- /dev/null
+++ b/sci-biology/Sibelia/Sibelia-9999.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils git-r3
+
+DESCRIPTION="Draw synteny plots using circos"
+HOMEPAGE="http://bioinf.spbau.ru/en/sibelia"
+EGIT_REPO_URI="https://github.com/bioinf/Sibelia.git"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+	dev-libs/boost:0
+	dev-cpp/tclap
+	>=dev-libs/libdivsufsort-2.0.1
+	sci-biology/seqan:*
+	sci-biology/lagan
+	sci-biology/SnpEff"
+# it contains bundled copies of all the above
+# we would need to create also a Gentoo package for D3.js
+#   (BSD License) http://d3js.org
+# it links using bundled libdivsufsort-2.0.1/lib/libdivsufsort.a
+# it install stuff into /usr/lib/Sibelia/{lagan,snpEff}/
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${P}"/src

diff --git a/sci-biology/Sibelia/metadata.xml b/sci-biology/Sibelia/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/Sibelia/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+</pkgmetadata>