[gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/

["David Seifert" <soap@gentoo.org>]

commit:     a4fea019175a1a73486a1f759b0cafc875826072
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 23 18:44:09 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Dec 23 18:45:34 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a4fea019

sci-biology/bamtools: Version bump to 2.5.1

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/bamtools/Manifest              |  1 +
 sci-biology/bamtools/bamtools-2.5.1.ebuild | 69 ++++++++++++++++++++++++++++++
 2 files changed, 70 insertions(+)

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index bd3643e1a9e..da707d0eb8f 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1 +1,2 @@
 DIST bamtools-2.4.2.tar.gz 548095 BLAKE2B 19f302eb5de9c8e3f0dc53cb9cbb359b1186b44318f7cb82e83ea995920bb30331d0873c9ad9c68601306772eab1283ead2b0eb4a8cb17cb1eade600c9cdbfac SHA512 244a63609c0b10a85bba7cac210a27ea9abafba136e9c91fc789c7aa21a6cdaa7622afebc50ec8d30d4446872d5206dbd3d679ca03e95ac90771c87359cb69a0
+DIST bamtools-2.5.1.tar.gz 549750 BLAKE2B c00b42b10e074e2c6b06f8bc9277a57080b9e99cd10080b1ad9052d59a3db353b33ecf6c30642d1651897396ea65e1e19cb15db0d58a89d4375fe34a8ec38e55 SHA512 f2c761c5bf923cf2f3db3dc54e40b4781307106b9177784f930aab619bd11fae3b343f3cfd232524580d39f0526a2a2f18efcf820fe4d9c951406bdb6b953afb

diff --git a/sci-biology/bamtools/bamtools-2.5.1.ebuild b/sci-biology/bamtools/bamtools-2.5.1.ebuild
new file mode 100644
index 00000000000..ba21654b97f
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-2.5.1.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils multibuild
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
+else
+	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0/${PV}" # no stable ABI yet
+IUSE="static-libs"
+
+RDEPEND="
+	>=dev-libs/jsoncpp-1.8.0:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != binary ]] &&
+		MULTIBUILD_VARIANTS=(
+			$(usev static-libs)
+			shared
+		)
+}
+
+src_prepare() {
+	# delete bundled libs, just to be safe
+	rm -r src/third_party/{gtest-1.6.0,jsoncpp} || die
+
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	my_configure() {
+		case "${MULTIBUILD_ID}" in
+			static*)
+				local mycmakeargs=( -DBUILD_SHARED_LIBS=OFF )
+				;;
+			shared)
+				local mycmakeargs=( -DBUILD_SHARED_LIBS=ON )
+				;;
+			*)
+				die "${MULTIBUILD_ID} is not recognized"
+				;;
+		esac
+
+		cmake-utils_src_configure
+	}
+	multibuild_foreach_variant my_configure
+}
+
+src_compile() {
+	multibuild_foreach_variant cmake-utils_src_compile
+}
+
+src_install() {
+	multibuild_foreach_variant cmake-utils_src_install
+}