[gentoo-commits] proj/sci:master commit in: sci-biology/swissknife/

[gentoo-commits] proj/sci:master commit in: sci-biology/swissknife/

[Martin Mokrejs]

commit:     89155aa286e3afcd3b29957b9089e1a1cfdcdd29
Author:     Martin Mokrejs <mmokrejs <AT> gentoo <DOT> org>
AuthorDate: Fri Feb 18 21:32:07 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Feb 18 21:32:07 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=89155aa2

sci-biology/swissknife: Perl library of modules to manipulate SwissProt flatfiles

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/swissknife/metadata.xml           |    5 ++++
 sci-biology/swissknife/swissknife-1.67.ebuild |   26 +++++++++++++++++++++++++
 2 files changed, 31 insertions(+), 0 deletions(-)

diff --git a/sci-biology/swissknife/metadata.xml b/sci-biology/swissknife/metadata.xml
new file mode 100644
index 0000000..d464821
--- /dev/null
+++ b/sci-biology/swissknife/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+</pkgmetadata>

diff --git a/sci-biology/swissknife/swissknife-1.67.ebuild b/sci-biology/swissknife/swissknife-1.67.ebuild
new file mode 100644
index 0000000..3ce1271
--- /dev/null
+++ b/sci-biology/swissknife/swissknife-1.67.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/dev-perl/Geo-IP/Geo-IP-1.38.ebuild,v 1.1 2009/05/19 12:22:20 tove Exp $
+
+EAPI=2
+
+inherit perl-module
+
+DESCRIPTION="Perl library of modules to manipulate SwissProt flatfiles"
+HOMEPAGE="http://swissknife.sourceforge.net/"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/Swissknife_1.67.tar.gz"
+
+DEPEND="virtual/perl-Module-Build"
+RDEPEND="${DEPEND}
+	>=dev-lang/perl-5.002"
+	#dev-perl/Carp
+	#dev-perl/Data-Dumper
+	#dev-perl/Exporter"
+
+SRC_TEST=no
+
+S="${WORKDIR}"/Swissknife_1.67

[gentoo-commits] proj/sci:master commit in: sci-biology/swissknife/

[Martin Mokrejs]

commit:     3977acdf17ee1837477720c673eebd324d00f137
Author:     Martin Mokrejs <mmokrejs <AT> gentoo <DOT> org>
AuthorDate: Fri Feb 18 21:33:36 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Feb 18 21:33:36 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3977acdf

sci-biology/swissknife: fixed Gentoo Copyright text

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/swissknife/swissknife-1.67.ebuild |    6 +++---
 1 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-biology/swissknife/swissknife-1.67.ebuild b/sci-biology/swissknife/swissknife-1.67.ebuild
index 3ce1271..52b59ba 100644
--- a/sci-biology/swissknife/swissknife-1.67.ebuild
+++ b/sci-biology/swissknife/swissknife-1.67.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-perl/Geo-IP/Geo-IP-1.38.ebuild,v 1.1 2009/05/19 12:22:20 tove Exp $
+# $Header: $
 
-EAPI=2
+EAPI=3
 
 inherit perl-module
 

[gentoo-commits] proj/sci:master commit in: sci-biology/swissknife/

[Justin Lecher]

commit:     4ae277cd763d9199cd3e83daf476da69b19901d0
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Sep 24 06:44:28 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Sep 24 06:44:28 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4ae277cd

sci-biology/swissknife: Version BUmp; Bump to EAPI=5

Package-Manager: portage-2.2.13

---
 sci-biology/swissknife/ChangeLog                                  | 8 ++++++++
 sci-biology/swissknife/metadata.xml                               | 2 +-
 .../swissknife/{swissknife-1.67.ebuild => swissknife-1.70.ebuild} | 8 ++++----
 3 files changed, 13 insertions(+), 5 deletions(-)

diff --git a/sci-biology/swissknife/ChangeLog b/sci-biology/swissknife/ChangeLog
new file mode 100644
index 0000000..d679425
--- /dev/null
+++ b/sci-biology/swissknife/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/swissknife
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  24 Sep 2014; Justin Lecher <jlec@gentoo.org> -swissknife-1.67.ebuild,
+  +swissknife-1.70.ebuild, metadata.xml:
+  Version BUmp; Bump to EAPI=5
+

diff --git a/sci-biology/swissknife/metadata.xml b/sci-biology/swissknife/metadata.xml
index d464821..f17a827 100644
--- a/sci-biology/swissknife/metadata.xml
+++ b/sci-biology/swissknife/metadata.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<herd>sci-biology</herd>
+  <herd>sci-biology</herd>
 </pkgmetadata>

diff --git a/sci-biology/swissknife/swissknife-1.67.ebuild b/sci-biology/swissknife/swissknife-1.70.ebuild
similarity index 84%
rename from sci-biology/swissknife/swissknife-1.67.ebuild
rename to sci-biology/swissknife/swissknife-1.70.ebuild
index ac2c25b..3955e74 100644
--- a/sci-biology/swissknife/swissknife-1.67.ebuild
+++ b/sci-biology/swissknife/swissknife-1.70.ebuild
@@ -2,25 +2,25 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=3
+EAPI=5
 
 inherit perl-module
 
 DESCRIPTION="Perl library of modules to manipulate SwissProt flatfiles"
 HOMEPAGE="http://swissknife.sourceforge.net/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/Swissknife_${PV}.tar.gz"
 
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
-SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/Swissknife_1.67.tar.gz"
 
 DEPEND="virtual/perl-Module-Build"
 RDEPEND="${DEPEND}
-	>=dev-lang/perl-5.002"
+	>=dev-lang/perl-5.002:="
 	#dev-perl/Carp
 	#dev-perl/Data-Dumper
 	#dev-perl/Exporter"
 
 SRC_TEST=no
 
-S="${WORKDIR}"/Swissknife_1.67
+S="${WORKDIR}"/Swissknife_${PV}

[gentoo-commits] proj/sci:master commit in: sci-biology/swissknife/

[Justin Lecher]

commit:     f8bb92469ab30dae64e9934733908595538249ce
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 15 07:22:27 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 15 07:22:27 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f8bb9246

sci-biology/swissknife: Fix dependency problems due to recent mask of perl-core packages

Package-Manager: portage-2.2.20

 sci-biology/swissknife/ChangeLog              | 7 +++++--
 sci-biology/swissknife/swissknife-1.70.ebuild | 4 ++--
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/sci-biology/swissknife/ChangeLog b/sci-biology/swissknife/ChangeLog
index a71e1c1..ecb4b87 100644
--- a/sci-biology/swissknife/ChangeLog
+++ b/sci-biology/swissknife/ChangeLog
@@ -1,8 +1,11 @@
 # ChangeLog for sci-biology/swissknife
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  15 Jun 2015; Justin Lecher <jlec@gentoo.org> swissknife-1.70.ebuild:
+  sci-biology/swissknife: Fix dependency problems due to recent mask of perl-
+  core packages
+
   24 Sep 2014; Justin Lecher <jlec@gentoo.org> -swissknife-1.67.ebuild,
   +swissknife-1.70.ebuild, metadata.xml:
   Version Bump; Bump to EAPI=5
-

diff --git a/sci-biology/swissknife/swissknife-1.70.ebuild b/sci-biology/swissknife/swissknife-1.70.ebuild
index 3955e74..1028656 100644
--- a/sci-biology/swissknife/swissknife-1.70.ebuild
+++ b/sci-biology/swissknife/swissknife-1.70.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -14,7 +14,7 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
 
-DEPEND="virtual/perl-Module-Build"
+DEPEND="dev-perl/Module-Build"
 RDEPEND="${DEPEND}
 	>=dev-lang/perl-5.002:="
 	#dev-perl/Carp

[gentoo-commits] proj/sci:master commit in: sci-biology/swissknife/

[Martin Mokrejs]

commit:     9fb1ca31ebdfbc995ce9b999f0739ef38c78a7bf
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul  1 08:46:28 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul  1 08:46:28 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=9fb1ca31

sci-biology/swissknife: version bump, use MY_PV

Package-Manager: portage-2.2.28

 .../swissknife/{swissknife-1.70.ebuild => swissknife-1.72.ebuild}     | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/sci-biology/swissknife/swissknife-1.70.ebuild b/sci-biology/swissknife/swissknife-1.72.ebuild
similarity index 90%
rename from sci-biology/swissknife/swissknife-1.70.ebuild
rename to sci-biology/swissknife/swissknife-1.72.ebuild
index 571d081..9e2f125 100644
--- a/sci-biology/swissknife/swissknife-1.70.ebuild
+++ b/sci-biology/swissknife/swissknife-1.72.ebuild
@@ -6,6 +6,8 @@ EAPI=5
 
 inherit perl-module
 
+MY_PV="${PV/./_}"
+
 DESCRIPTION="Perl library of modules to manipulate SwissProt flatfiles"
 HOMEPAGE="http://swissknife.sourceforge.net/"
 SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/Swissknife_${PV}.tar.gz"
@@ -23,4 +25,4 @@ RDEPEND="${DEPEND}
 
 SRC_TEST=no
 
-S="${WORKDIR}"/Swissknife_${PV}
+S="${WORKDIR}"/Swissknife_${MY_PV}

[gentoo-commits] proj/sci:master commit in: sci-biology/swissknife/

[Martin Mokrejs]

commit:     703a6243da6024144f06dd815c4bee8b82e1879f
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Dec 14 13:39:00 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Dec 14 13:39:00 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=703a6243

sci-biology/swissknife: version bump

Package-Manager: Portage-2.3.16, Repoman-2.3.6

 .../swissknife/{swissknife-1.72.ebuild => swissknife-1.73.ebuild}   | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/sci-biology/swissknife/swissknife-1.72.ebuild b/sci-biology/swissknife/swissknife-1.73.ebuild
similarity index 84%
rename from sci-biology/swissknife/swissknife-1.72.ebuild
rename to sci-biology/swissknife/swissknife-1.73.ebuild
index c25965910..be1a921a5 100644
--- a/sci-biology/swissknife/swissknife-1.72.ebuild
+++ b/sci-biology/swissknife/swissknife-1.73.ebuild
@@ -1,12 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
 
 inherit perl-module
 
-MY_PV="${PV/./_}"
-
 DESCRIPTION="Perl library of modules to manipulate SwissProt flatfiles"
 HOMEPAGE="http://swissknife.sourceforge.net/"
 SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/Swissknife_${PV}.tar.gz"
@@ -24,4 +22,4 @@ RDEPEND="${DEPEND}
 
 SRC_TEST=no
 
-S="${WORKDIR}"/Swissknife_${MY_PV}
+S="${WORKDIR}"/Swissknife_${PV}