[gentoo-commits] repo/gentoo:master commit in: dev-python/pytables/, dev-python/pytables/files/

["Benda XU" <heroxbd@gentoo.org>]

commit:     6891e6348ac3444b82d655d97c244d05ef122a8e
Author:     Benda Xu <heroxbd <AT> gentoo <DOT> org>
AuthorDate: Mon Dec  4 03:23:15 2017 +0000
Commit:     Benda XU <heroxbd <AT> gentoo <DOT> org>
CommitDate: Mon Dec  4 03:23:15 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6891e634

dev-python/pytables: drop old version.

Reported-by: Orivej Desh <orivej <AT> gmx.fr>
Suggested-by: Nick Wallingford <nick <AT> wallingford.cc>
Bug: https://bugs.gentoo.org/590936
Package-Manager: Portage-2.3.16, Repoman-2.3.6

 dev-python/pytables/Manifest                       |  3 +-
 .../pytables/files/pytables-3.1.1-blosc.patch      | 16 -----
 .../files/pytables-3.1.1-cython-backport.patch     | 65 -------------------
 .../files/pytables-3.1.1-numpy19-backport.patch    | 51 ---------------
 dev-python/pytables/pytables-3.1.1-r2.ebuild       | 75 ----------------------
 5 files changed, 1 insertion(+), 209 deletions(-)

diff --git a/dev-python/pytables/Manifest b/dev-python/pytables/Manifest
index e18340aad94..0e5ff0132fe 100644
--- a/dev-python/pytables/Manifest
+++ b/dev-python/pytables/Manifest
@@ -1,3 +1,2 @@
-DIST tables-3.1.1.tar.gz 6715786 SHA256 39b9036376f1185599771c19276f13b5b9119d98f9108f58595745ded3fe2da3 SHA512 b5b2052dd81c4748c5e26c1f61f9f92891f48335b0a553f7602ab11c9029dd673d27b91e24cac0da21a81df0c26dbcd9a438214fa58af1ae831c5f04dfa212a6 WHIRLPOOL 86fd6dc9e12503fdbd23013b75f33a41eadbbac0e6dd5ac9a91476d073195077fc6b3d5ad24b1dd4b4c18ae7ed8abc8ea1708262e52240f4c2c3b1153f8c9e91
 DIST tables-3.3.0.tar.gz 7004337 SHA256 8383ccf02e041a5d55494a09fc5514140b4653055a2732c981b5fd0f7408822c SHA512 e19445f0f5f2530d49ce55f258931babb7b05df2366637ddbc306323a1f75b7f7dcf91d70a8cc1f41b182d4cdd9c83872873168592bdcce7bd5acae9f3274f36 WHIRLPOOL f270f741d6886775cc730fbcb79de215fbbe2d9b7b2b6efc6b5b3fa7d141046e7c69daad140ad7cc533b439bfae801ea0e1567939dc4258e5c3b6a88f27cd86c
-DIST tables-3.4.2.tar.gz 7593471 SHA256 fdbbea4edb6bad0ac0e53fc7bc6970e78e12eef4944aa4146bcdcb573201676c SHA512 8c3bb9113e5082f8b44866b04728a04dae37fbd576c3259309fc305fd4cc0c4f74925557e74f6bd1bd1fc5150d8091648139c4c702e5ed9f53e0ace11c2ac58b WHIRLPOOL 392e117a3ad372ee91a02ee66994f3c03e67b4ae7473f5761e13215ce33084fc3ac8e9e371ca9b59f374066523bcd3ebbced01c49faaa84d4af75a26811ee35f
+DIST tables-3.4.2.tar.gz 7593471 BLAKE2B 1a011a2a910a25d4e7cad68b5a1a267482f5ed958aa824dfba5a6c902200c56253c7d5609cd674dfcb288f6ebf2ecb76f4324e53b852f70d0cfc60d6b222510a SHA512 8c3bb9113e5082f8b44866b04728a04dae37fbd576c3259309fc305fd4cc0c4f74925557e74f6bd1bd1fc5150d8091648139c4c702e5ed9f53e0ace11c2ac58b

diff --git a/dev-python/pytables/files/pytables-3.1.1-blosc.patch b/dev-python/pytables/files/pytables-3.1.1-blosc.patch
deleted file mode 100644
index 3a4ba18e5e7..00000000000
--- a/dev-python/pytables/files/pytables-3.1.1-blosc.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- setup.py | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/setup.py b/setup.py
-index 2c0c126..1448eb1 100755
---- a/setup.py
-+++ b/setup.py
-@@ -768,7 +768,7 @@ if 'BLOSC' not in optional_libs:
-             print("Setting compiler flag '-msse2'")
-             CFLAGS.append("-msse2")
- else:
--    ADDLIBS += ['blosc']
-+    ADDLIBS += ['blosc', 'blosc_filter']
- 
- 
- utilsExtension_libs = LIBS + ADDLIBS

diff --git a/dev-python/pytables/files/pytables-3.1.1-cython-backport.patch b/dev-python/pytables/files/pytables-3.1.1-cython-backport.patch
deleted file mode 100644
index 7db41d2e1a6..00000000000
--- a/dev-python/pytables/files/pytables-3.1.1-cython-backport.patch
+++ /dev/null
@@ -1,65 +0,0 @@
- setup.py               | 13 +++++++------
- tables/req_versions.py |  2 +-
- 2 files changed, 8 insertions(+), 7 deletions(-)
-
-diff --git a/setup.py b/setup.py
-index 0f2f3f7..52cda49 100755
---- a/setup.py
-+++ b/setup.py
-@@ -25,6 +25,7 @@ from distutils.core import Extension
- from distutils.dep_util import newer
- from distutils.util import convert_path
- from distutils.ccompiler import new_compiler
-+from distutils.version import LooseVersion
- 
- cmdclass = {}
- setuptools_kwargs = {}
-@@ -106,7 +107,7 @@ def check_import(pkgname, pkgver):
-             "You need %(pkgname)s %(pkgver)s or greater to run PyTables!"
-             % {'pkgname': pkgname, 'pkgver': pkgver})
-     else:
--        if mod.__version__ < pkgver:
-+        if mod.__version__ < LooseVersion(pkgver):
-             exit_with_error(
-                 "You need %(pkgname)s %(pkgver)s or greater to run PyTables!"
-                 % {'pkgname': pkgname, 'pkgver': pkgver})
-@@ -122,21 +123,21 @@ if not has_setuptools:
- 
- # Check if Cython is installed or not (requisite)
- try:
-+    from Cython import __version__ as cython_version
-     from Cython.Distutils import build_ext
--    from Cython.Compiler.Main import Version
-     cmdclass['build_ext'] = build_ext
- except ImportError:
-     exit_with_error(
-         "You need %(pkgname)s %(pkgver)s or greater to compile PyTables!"
-         % {'pkgname': 'Cython', 'pkgver': min_cython_version})
- 
--if Version.version < min_cython_version:
-+if LooseVersion(cython_version) < min_cython_version:
-     exit_with_error(
--        "At least Cython %s is needed so as to generate extensions!"
--        % (min_cython_version))
-+        "You need %(pkgname)s %(pkgver)s or greater to run PyTables!"
-+        % {'pkgname': 'Cython', 'pkgver': min_cython_version})
- else:
-     print("* Found %(pkgname)s %(pkgver)s package installed."
--          % {'pkgname': 'Cython', 'pkgver': Version.version})
-+          % {'pkgname': 'Cython', 'pkgver': cython_version})
- 
- VERSION = open('VERSION').read().strip()
- 
-diff --git a/tables/req_versions.py b/tables/req_versions.py
-index 2c9ca01..bd498c3 100644
---- a/tables/req_versions.py
-+++ b/tables/req_versions.py
-@@ -17,7 +17,7 @@
- # Minimum recommended versions for mandatory packages
- min_numpy_version = '1.4.1'
- min_numexpr_version = '2.0.0'
--min_cython_version = '0.13'
-+min_cython_version = '0.14'
- 
- # The THG team has decided to fix an API inconsistency in the definition
- # of the H5Z_class_t structure in version 1.8.3

diff --git a/dev-python/pytables/files/pytables-3.1.1-numpy19-backport.patch b/dev-python/pytables/files/pytables-3.1.1-numpy19-backport.patch
deleted file mode 100644
index c2f0c2280f0..00000000000
--- a/dev-python/pytables/files/pytables-3.1.1-numpy19-backport.patch
+++ /dev/null
@@ -1,51 +0,0 @@
-From 854d5798ca9fd78c00e18710de2e93202f675f3e Mon Sep 17 00:00:00 2001
-From: Antonio Valentino <antonio.valentino@tiscali.it>
-Date: Sun, 6 Jul 2014 21:21:39 +0200
-Subject: [PATCH] Fix a compatibility problem with numpy 1.9 (close: #362)
-
----
- RELEASE_NOTES.txt | 6 ++++++
- tables/table.py   | 6 +++++-
- 2 files changed, 11 insertions(+), 1 deletion(-)
-
-diff --git a/RELEASE_NOTES.txt b/RELEASE_NOTES.txt
-index f219eb3..1da20e2 100644
---- a/RELEASE_NOTES.txt
-+++ b/RELEASE_NOTES.txt
-@@ -19,6 +19,12 @@ Improvements
-   requiring strict access alignment.
- 
- 
-+Bugs fixed
-+----------
-+
-+- Fixed compatibitily problems with numpy 1.9 (closes :issue:`362`)
-+
-+
- Changes from 3.1.0 to 3.1.1
- ===========================
- 
-diff --git a/tables/table.py b/tables/table.py
-index 235f599..ffe8fd6 100644
---- a/tables/table.py
-+++ b/tables/table.py
-@@ -3406,6 +3406,10 @@ def _getindex(self):
-                      associated with this column (None if the column is not
-                      indexed).""")
- 
-+    @lazyattr
-+    def _itemtype(self):
-+        return self.descr._v_dtypes[self.name]
-+
-     def _getshape(self):
-         return (self.table.nrows,) + self.descr._v_dtypes[self.name].shape
- 
-@@ -3529,7 +3533,7 @@ def __iter__(self):
-         table = self.table
-         itemsize = self.dtype.itemsize
-         nrowsinbuf = table._v_file.params['IO_BUFFER_SIZE'] // itemsize
--        buf = numpy.empty((nrowsinbuf, ), self.dtype)
-+        buf = numpy.empty((nrowsinbuf, ), self._itemtype)
-         max_row = len(self)
-         for start_row in xrange(0, len(self), nrowsinbuf):
-             end_row = min(start_row + nrowsinbuf, max_row)

diff --git a/dev-python/pytables/pytables-3.1.1-r2.ebuild b/dev-python/pytables/pytables-3.1.1-r2.ebuild
deleted file mode 100644
index f22a4f0c61e..00000000000
--- a/dev-python/pytables/pytables-3.1.1-r2.ebuild
+++ /dev/null
@@ -1,75 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
-PYTHON_REQ_USE="threads(+)"
-
-MY_PN=tables
-MY_P=${MY_PN}-${PV}
-
-inherit distutils-r1
-
-DESCRIPTION="Hierarchical datasets for Python"
-HOMEPAGE="http://www.pytables.org/"
-SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz"
-
-SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-LICENSE="BSD"
-IUSE="doc examples"
-
-RDEPEND="
-	app-arch/bzip2:0=
-	dev-libs/c-blosc:0=[hdf5]
-	dev-libs/lzo:2=
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/numexpr[${PYTHON_USEDEP}]
-	sci-libs/hdf5:0="
-DEPEND="${RDEPEND}
-	>=dev-python/cython-0.14[${PYTHON_USEDEP}]"
-
-S="${WORKDIR}/${MY_P}"
-
-DOCS=( ANNOUNCE.txt RELEASE_NOTES.txt THANKS )
-
-PATCHES=(
-	"${FILESDIR}"/${P}-cython-backport.patch
-	"${FILESDIR}"/${P}-numpy19-backport.patch
-	"${FILESDIR}"/${P}-blosc.patch
-	)
-
-python_prepare_all() {
-	export HDF5_DIR="${EPREFIX}"/usr
-	sed \
-		-e "s:/usr:${EPREFIX}/usr:g" \
-		-e 's:"c-blosc/hdf5/blosc_filter.c"::g' \
-		-i setup.py || die
-	rm -r c-blosc/{blosc,hdf5,internal-complibs} || die
-	distutils-r1_python_prepare_all
-}
-
-python_compile() {
-	python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
-	distutils-r1_python_compile
-}
-
-python_test() {
-	cd "${BUILD_DIR}"/lib* || die
-	${EPYTHON} tables/tests/test_all.py || die
-}
-
-python_install_all() {
-	if use doc; then
-		HTML_DOCS=( doc/html/. )
-		DOCS+=( doc/scripts )
-	fi
-	distutils-r1_python_install_all
-
-	if use examples; then
-		insinto /usr/share/doc/${PF}
-		doins -r examples
-		doins -r contrib
-	fi
-}