From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 04AD01396D9 for ; Thu, 16 Nov 2017 17:56:16 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 10BCEE0D4C; Thu, 16 Nov 2017 17:56:14 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id E6CFCE0D4C for ; Thu, 16 Nov 2017 17:56:13 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C1AD233BEB4 for ; Thu, 16 Nov 2017 17:56:12 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 5BAE49CE5 for ; Thu, 16 Nov 2017 17:56:11 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1510854954.a27c26fa6cd2fe0cb277ecadc0ece01e8d4fa277.soap@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/STAR/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/STAR/STAR-2.4.1c.ebuild X-VCS-Directories: sci-biology/STAR/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: a27c26fa6cd2fe0cb277ecadc0ece01e8d4fa277 X-VCS-Branch: master Date: Thu, 16 Nov 2017 17:56:11 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: f76cdfb8-8b10-4fb3-9bef-2daa06fc1371 X-Archives-Hash: 3df60d78f804e6ee52c680edbbcad779 commit: a27c26fa6cd2fe0cb277ecadc0ece01e8d4fa277 Author: David Seifert gentoo org> AuthorDate: Thu Nov 16 17:54:47 2017 +0000 Commit: David Seifert gentoo org> CommitDate: Thu Nov 16 17:55:54 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a27c26fa sci-biology/STAR: In main tree Package-Manager: Portage-2.3.14, Repoman-2.3.6 sci-biology/STAR/STAR-2.4.1c.ebuild | 37 ------------------------------------- 1 file changed, 37 deletions(-) diff --git a/sci-biology/STAR/STAR-2.4.1c.ebuild b/sci-biology/STAR/STAR-2.4.1c.ebuild deleted file mode 100644 index c39ea1e22..000000000 --- a/sci-biology/STAR/STAR-2.4.1c.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" -HOMEPAGE="http://code.google.com/p/rna-star/" -SRC_URI="https://github.com/alexdobin/STAR/archive/STAR_"${PV}".tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# sci-biology/htslib -DEPEND="" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/STAR-STAR_"${PV}" - -# contains bundled STAR-Fusion -src_prepare(){ - sed -e "s/= gcc/= $(tc-getCC)/;s/-O2/${CFLAGS}/g" -i source/htslib/Makefile || die - sed -e "s/-O3/${CFLAGS}/g" -i source/Makefile || die -} - -src_compile(){ - cd source || die - emake STAR -} - -src_install(){ - dobin source/STAR - dodoc doc/STARmanual.pdf -}