From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 7AEF81396D9 for ; Thu, 16 Nov 2017 13:17:14 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 71B10E0E67; Thu, 16 Nov 2017 13:17:13 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 3E6BFE0E67 for ; Thu, 16 Nov 2017 13:17:12 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 330B133BE68 for ; Thu, 16 Nov 2017 13:17:11 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id EA3F49C9A for ; Thu, 16 Nov 2017 13:17:09 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1510838197.cd2d3189dadad62ef240af7f543861f2f621bf4d.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/HTSeq/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/HTSeq/HTSeq-0.9.1.ebuild sci-biology/HTSeq/HTSeq-9999.ebuild sci-biology/HTSeq/Manifest sci-biology/HTSeq/metadata.xml X-VCS-Directories: sci-biology/HTSeq/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: cd2d3189dadad62ef240af7f543861f2f621bf4d X-VCS-Branch: master Date: Thu, 16 Nov 2017 13:17:09 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 6effd3e3-0367-4752-b1d7-ff0253883771 X-Archives-Hash: f370e115c01bc37a0cf69924b8087d77 commit: cd2d3189dadad62ef240af7f543861f2f621bf4d Author: David Seifert gentoo org> AuthorDate: Thu Nov 16 11:39:24 2017 +0000 Commit: David Seifert gentoo org> CommitDate: Thu Nov 16 13:16:37 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cd2d3189 sci-biology/HTSeq: Initial addition Closes: https://github.com/gentoo/sci/pull/814 Package-Manager: Portage-2.3.14, Repoman-2.3.6 sci-biology/HTSeq/HTSeq-0.9.1.ebuild | 31 +++++++++++++++++++++++++++++++ sci-biology/HTSeq/HTSeq-9999.ebuild | 31 +++++++++++++++++++++++++++++++ sci-biology/HTSeq/Manifest | 1 + sci-biology/HTSeq/metadata.xml | 19 +++++++++++++++++++ 4 files changed, 82 insertions(+) diff --git a/sci-biology/HTSeq/HTSeq-0.9.1.ebuild b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild new file mode 100644 index 00000000000..446bbef36ef --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit distutils-r1 + +DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" +HOMEPAGE="https://htseq.readthedocs.io/" + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/simon-anders/htseq.git" +else + SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3+" +SLOT="0" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +DEPEND=" + ${RDEPEND} + >=dev-lang/swig-3.0.8 + dev-python/cython[${PYTHON_USEDEP}]" diff --git a/sci-biology/HTSeq/HTSeq-9999.ebuild b/sci-biology/HTSeq/HTSeq-9999.ebuild new file mode 100644 index 00000000000..446bbef36ef --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-9999.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit distutils-r1 + +DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" +HOMEPAGE="https://htseq.readthedocs.io/" + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/simon-anders/htseq.git" +else + SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3+" +SLOT="0" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +DEPEND=" + ${RDEPEND} + >=dev-lang/swig-3.0.8 + dev-python/cython[${PYTHON_USEDEP}]" diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest new file mode 100644 index 00000000000..6d90d56d352 --- /dev/null +++ b/sci-biology/HTSeq/Manifest @@ -0,0 +1 @@ +DIST HTSeq-0.9.1.tar.gz 596941 SHA256 af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 WHIRLPOOL da3f1d867f9cfa05e34321f75fb34ef79e943476ee650d4689e320078821703721168bfdd9e46f10f1319cc1006771cd205a80569549d21719d38aea6b0be3a8 diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml new file mode 100644 index 00000000000..e9ba18c35b3 --- /dev/null +++ b/sci-biology/HTSeq/metadata.xml @@ -0,0 +1,19 @@ + + + + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + + proxy-maint@gentoo.org + Proxy Maintainers + + + sci-biology@gentoo.org + Gentoo Biology Project + + + HTSeq + +