From: "David Seifert" <soap@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/HTSeq/
Date: Thu, 16 Nov 2017 13:17:09 +0000 (UTC) [thread overview]
Message-ID: <1510838197.cd2d3189dadad62ef240af7f543861f2f621bf4d.soap@gentoo> (raw)
commit: cd2d3189dadad62ef240af7f543861f2f621bf4d
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 16 11:39:24 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov 16 13:16:37 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cd2d3189
sci-biology/HTSeq: Initial addition
Closes: https://github.com/gentoo/sci/pull/814
Package-Manager: Portage-2.3.14, Repoman-2.3.6
sci-biology/HTSeq/HTSeq-0.9.1.ebuild | 31 +++++++++++++++++++++++++++++++
sci-biology/HTSeq/HTSeq-9999.ebuild | 31 +++++++++++++++++++++++++++++++
sci-biology/HTSeq/Manifest | 1 +
sci-biology/HTSeq/metadata.xml | 19 +++++++++++++++++++
4 files changed, 82 insertions(+)
diff --git a/sci-biology/HTSeq/HTSeq-0.9.1.ebuild b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild
new file mode 100644
index 00000000000..446bbef36ef
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
+HOMEPAGE="https://htseq.readthedocs.io/"
+
+if [[ ${PV} == *9999 ]]; then
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"
+else
+ SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+ KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3+"
+SLOT="0"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ sci-biology/pysam[${PYTHON_USEDEP}]"
+DEPEND="
+ ${RDEPEND}
+ >=dev-lang/swig-3.0.8
+ dev-python/cython[${PYTHON_USEDEP}]"
diff --git a/sci-biology/HTSeq/HTSeq-9999.ebuild b/sci-biology/HTSeq/HTSeq-9999.ebuild
new file mode 100644
index 00000000000..446bbef36ef
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-9999.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
+HOMEPAGE="https://htseq.readthedocs.io/"
+
+if [[ ${PV} == *9999 ]]; then
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"
+else
+ SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+ KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3+"
+SLOT="0"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ sci-biology/pysam[${PYTHON_USEDEP}]"
+DEPEND="
+ ${RDEPEND}
+ >=dev-lang/swig-3.0.8
+ dev-python/cython[${PYTHON_USEDEP}]"
diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest
new file mode 100644
index 00000000000..6d90d56d352
--- /dev/null
+++ b/sci-biology/HTSeq/Manifest
@@ -0,0 +1 @@
+DIST HTSeq-0.9.1.tar.gz 596941 SHA256 af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 WHIRLPOOL da3f1d867f9cfa05e34321f75fb34ef79e943476ee650d4689e320078821703721168bfdd9e46f10f1319cc1006771cd205a80569549d21719d38aea6b0be3a8
diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
new file mode 100644
index 00000000000..e9ba18c35b3
--- /dev/null
+++ b/sci-biology/HTSeq/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>proxy-maint@gentoo.org</email>
+ <name>Proxy Maintainers</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="pypi">HTSeq</remote-id>
+ </upstream>
+</pkgmetadata>
next reply other threads:[~2017-11-16 13:17 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-11-16 13:17 David Seifert [this message]
-- strict thread matches above, loose matches on Subject: below --
2018-01-06 10:19 [gentoo-commits] repo/gentoo:master commit in: sci-biology/HTSeq/ Michał Górny
2020-01-16 6:39 Michał Górny
2020-04-14 8:35 Joonas Niilola
2020-08-03 16:56 David Seifert
2020-08-03 16:56 David Seifert
2022-07-02 13:16 David Seifert
2022-07-02 13:16 David Seifert
2022-07-02 13:16 David Seifert
2023-02-24 7:00 Andrew Ammerlaan
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1510838197.cd2d3189dadad62ef240af7f543861f2f621bf4d.soap@gentoo \
--to=soap@gentoo.org \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox