* [gentoo-commits] proj/sci:master commit in: sci-libs/htslib/
@ 2017-02-16 23:03 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2017-02-16 23:03 UTC (permalink / raw
To: gentoo-commits
commit: 8414c09216058af3245fd20b5abcc28928925461
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Feb 16 22:20:50 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Feb 16 22:20:50 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8414c092
sci-libs/htslib: version bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-libs/htslib/htslib-1.3.2.ebuild | 21 +++++++++++++++++++++
sci-libs/htslib/metadata.xml | 11 +++++++++++
2 files changed, 32 insertions(+)
diff --git a/sci-libs/htslib/htslib-1.3.2.ebuild b/sci-libs/htslib/htslib-1.3.2.ebuild
new file mode 100644
index 000000000..1cab22ff7
--- /dev/null
+++ b/sci-libs/htslib/htslib-1.3.2.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="C library for high-throughput sequencing data formats"
+HOMEPAGE="http://www.htslib.org/"
+SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
+
+SLOT="0"
+LICENSE="MIT"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs"
+
+src_install() {
+ default
+ if ! use static-libs; then
+ find "${ED}" -type f -name "*.a" -delete || die
+ fi
+}
diff --git a/sci-libs/htslib/metadata.xml b/sci-libs/htslib/metadata.xml
new file mode 100644
index 000000000..5b953af48
--- /dev/null
+++ b/sci-libs/htslib/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="sourceforge">samtools</remote-id>
+ </upstream>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/htslib/
@ 2017-02-27 2:30 Christoph Junghans
0 siblings, 0 replies; 6+ messages in thread
From: Christoph Junghans @ 2017-02-27 2:30 UTC (permalink / raw
To: gentoo-commits
commit: 8b0e3624af602d97dfbce3a44eb263d5a05c9e45
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 26 18:06:40 2017 +0000
Commit: Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Sun Feb 26 18:07:20 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b0e3624
sci-libs/htslib: Remove KEYWORDS due to being broken
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-libs/htslib/htslib-1.3.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-libs/htslib/htslib-1.3.2.ebuild b/sci-libs/htslib/htslib-1.3.2.ebuild
index 0dac55735..2ca68eb3f 100644
--- a/sci-libs/htslib/htslib-1.3.2.ebuild
+++ b/sci-libs/htslib/htslib-1.3.2.ebuild
@@ -9,7 +9,7 @@ SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
SLOT="0"
LICENSE="MIT"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS=""
IUSE="static-libs"
src_install() {
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/htslib/
@ 2017-04-30 13:11 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2017-04-30 13:11 UTC (permalink / raw
To: gentoo-commits
commit: 810353ee167b5550cce6171a9f3c2e601d47856d
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 30 13:11:16 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 30 13:11:16 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=810353ee
sci-libs/htslib: version bump
@soap: Keeping empty KEYWORDS
Package-Manager: Portage-2.3.5, Repoman-2.3.2
sci-libs/htslib/htslib-1.3.2.ebuild | 9 ++++++++-
.../htslib/{htslib-1.3.2.ebuild => htslib-1.4.ebuild} | 15 +++++++++++++--
2 files changed, 21 insertions(+), 3 deletions(-)
diff --git a/sci-libs/htslib/htslib-1.3.2.ebuild b/sci-libs/htslib/htslib-1.3.2.ebuild
index 2ca68eb3f..f4c042bbf 100644
--- a/sci-libs/htslib/htslib-1.3.2.ebuild
+++ b/sci-libs/htslib/htslib-1.3.2.ebuild
@@ -3,7 +3,7 @@
EAPI=6
-DESCRIPTION="C library for high-throughput sequencing data formats"
+DESCRIPTION="C library for HTS data with bgzip, tabix and htsfile binaries"
HOMEPAGE="http://www.htslib.org/"
SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
@@ -12,6 +12,13 @@ LICENSE="MIT"
KEYWORDS=""
IUSE="static-libs"
+DEPEND="
+ dev-libs/openssl:=
+ app-arch/xz-utils
+ app-arch/bzip2
+ net-misc/curl"
+RDEPEND="${DEPEND}"
+
src_install() {
default
if ! use static-libs; then
diff --git a/sci-libs/htslib/htslib-1.3.2.ebuild b/sci-libs/htslib/htslib-1.4.ebuild
similarity index 56%
copy from sci-libs/htslib/htslib-1.3.2.ebuild
copy to sci-libs/htslib/htslib-1.4.ebuild
index 2ca68eb3f..1e1274ff0 100644
--- a/sci-libs/htslib/htslib-1.3.2.ebuild
+++ b/sci-libs/htslib/htslib-1.4.ebuild
@@ -3,18 +3,29 @@
EAPI=6
-DESCRIPTION="C library for high-throughput sequencing data formats"
+DESCRIPTION="C library for HTS data with bgzip, tabix and htsfile binaries"
HOMEPAGE="http://www.htslib.org/"
SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
-SLOT="0"
+SLOT="2" # libhts.so.2
LICENSE="MIT"
KEYWORDS=""
IUSE="static-libs"
+DEPEND="
+ dev-libs/openssl:=
+ app-arch/xz-utils
+ app-arch/bzip2
+ net-misc/curl"
+RDEPEND="${DEPEND}"
+
src_install() {
default
if ! use static-libs; then
find "${ED}" -type f -name "*.a" -delete || die
fi
}
+
+pkg_postinst(){
+ einfo "You may want to install sci-libs/htslib-plugins"
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/htslib/
@ 2017-05-21 20:06 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2017-05-21 20:06 UTC (permalink / raw
To: gentoo-commits
commit: 7c2ca86886bf5a690ffb05fa6fb8d0d563a7569f
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun May 21 20:02:50 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun May 21 20:02:50 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7c2ca868
sci-libs/htslib: note version lib along the SLOT
Package-Manager: Portage-2.3.5, Repoman-2.3.2
sci-libs/htslib/htslib-1.3.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-libs/htslib/htslib-1.3.2.ebuild b/sci-libs/htslib/htslib-1.3.2.ebuild
index f4c042bbf..5e27a462b 100644
--- a/sci-libs/htslib/htslib-1.3.2.ebuild
+++ b/sci-libs/htslib/htslib-1.3.2.ebuild
@@ -7,7 +7,7 @@ DESCRIPTION="C library for HTS data with bgzip, tabix and htsfile binaries"
HOMEPAGE="http://www.htslib.org/"
SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
-SLOT="0"
+SLOT="1.4" # libhts.so.1.4
LICENSE="MIT"
KEYWORDS=""
IUSE="static-libs"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/htslib/
@ 2017-07-28 20:05 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2017-07-28 20:05 UTC (permalink / raw
To: gentoo-commits
commit: ddbb54b8a5e307ed3396b88bc6c1853fc44eaa12
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jul 20 20:12:32 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 28 20:05:19 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ddbb54b8
sci-libs/htslib: version bump
Keeping KEYWORDS empty because it conflicts with htslib-1.3.1 as of now
unless jlec/soap proceed in some proper way.
Package-Manager: Portage-2.3.6, Repoman-2.3.2
sci-libs/htslib/htslib-1.5.ebuild | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/sci-libs/htslib/htslib-1.5.ebuild b/sci-libs/htslib/htslib-1.5.ebuild
new file mode 100644
index 000000000..1e1274ff0
--- /dev/null
+++ b/sci-libs/htslib/htslib-1.5.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="C library for HTS data with bgzip, tabix and htsfile binaries"
+HOMEPAGE="http://www.htslib.org/"
+SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
+
+SLOT="2" # libhts.so.2
+LICENSE="MIT"
+KEYWORDS=""
+IUSE="static-libs"
+
+DEPEND="
+ dev-libs/openssl:=
+ app-arch/xz-utils
+ app-arch/bzip2
+ net-misc/curl"
+RDEPEND="${DEPEND}"
+
+src_install() {
+ default
+ if ! use static-libs; then
+ find "${ED}" -type f -name "*.a" -delete || die
+ fi
+}
+
+pkg_postinst(){
+ einfo "You may want to install sci-libs/htslib-plugins"
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/htslib/
@ 2017-09-02 12:46 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2017-09-02 12:46 UTC (permalink / raw
To: gentoo-commits
commit: 4ef945d1cfc4da74891e2cecdf403f6852cc4ddf
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 2 12:45:51 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Sep 2 12:45:51 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4ef945d1
sci-libs/htslib: Remove old
sci-libs/htslib/htslib-1.3.2.ebuild | 27 ---------------------------
sci-libs/htslib/htslib-1.4.ebuild | 31 -------------------------------
sci-libs/htslib/htslib-1.5.ebuild | 31 -------------------------------
sci-libs/htslib/metadata.xml | 11 -----------
4 files changed, 100 deletions(-)
diff --git a/sci-libs/htslib/htslib-1.3.2.ebuild b/sci-libs/htslib/htslib-1.3.2.ebuild
deleted file mode 100644
index 5e27a462b..000000000
--- a/sci-libs/htslib/htslib-1.3.2.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="C library for HTS data with bgzip, tabix and htsfile binaries"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
-
-SLOT="1.4" # libhts.so.1.4
-LICENSE="MIT"
-KEYWORDS=""
-IUSE="static-libs"
-
-DEPEND="
- dev-libs/openssl:=
- app-arch/xz-utils
- app-arch/bzip2
- net-misc/curl"
-RDEPEND="${DEPEND}"
-
-src_install() {
- default
- if ! use static-libs; then
- find "${ED}" -type f -name "*.a" -delete || die
- fi
-}
diff --git a/sci-libs/htslib/htslib-1.4.ebuild b/sci-libs/htslib/htslib-1.4.ebuild
deleted file mode 100644
index 1e1274ff0..000000000
--- a/sci-libs/htslib/htslib-1.4.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="C library for HTS data with bgzip, tabix and htsfile binaries"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
-
-SLOT="2" # libhts.so.2
-LICENSE="MIT"
-KEYWORDS=""
-IUSE="static-libs"
-
-DEPEND="
- dev-libs/openssl:=
- app-arch/xz-utils
- app-arch/bzip2
- net-misc/curl"
-RDEPEND="${DEPEND}"
-
-src_install() {
- default
- if ! use static-libs; then
- find "${ED}" -type f -name "*.a" -delete || die
- fi
-}
-
-pkg_postinst(){
- einfo "You may want to install sci-libs/htslib-plugins"
-}
diff --git a/sci-libs/htslib/htslib-1.5.ebuild b/sci-libs/htslib/htslib-1.5.ebuild
deleted file mode 100644
index 1e1274ff0..000000000
--- a/sci-libs/htslib/htslib-1.5.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="C library for HTS data with bgzip, tabix and htsfile binaries"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
-
-SLOT="2" # libhts.so.2
-LICENSE="MIT"
-KEYWORDS=""
-IUSE="static-libs"
-
-DEPEND="
- dev-libs/openssl:=
- app-arch/xz-utils
- app-arch/bzip2
- net-misc/curl"
-RDEPEND="${DEPEND}"
-
-src_install() {
- default
- if ! use static-libs; then
- find "${ED}" -type f -name "*.a" -delete || die
- fi
-}
-
-pkg_postinst(){
- einfo "You may want to install sci-libs/htslib-plugins"
-}
diff --git a/sci-libs/htslib/metadata.xml b/sci-libs/htslib/metadata.xml
deleted file mode 100644
index 49735ee17..000000000
--- a/sci-libs/htslib/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">samtools</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
end of thread, other threads:[~2017-09-02 12:46 UTC | newest]
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2017-07-28 20:05 Martin Mokrejs
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