From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 3E2621396D0 for ; Sat, 2 Sep 2017 12:46:07 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id A064FE0D1C; Sat, 2 Sep 2017 12:46:06 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 6DF47E0CCD for ; Sat, 2 Sep 2017 12:46:06 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 6B6DB34165C for ; Sat, 2 Sep 2017 12:46:05 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 12A698B53 for ; Sat, 2 Sep 2017 12:46:04 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1504356345.c7d12eab1de43f052d778980e5d6b8bc016d9141.soap@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bcftools/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/bcftools/bcftools-1.3.1.ebuild sci-biology/bcftools/bcftools-1.4.ebuild sci-biology/bcftools/bcftools-1.5.ebuild sci-biology/bcftools/metadata.xml X-VCS-Directories: sci-biology/bcftools/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: c7d12eab1de43f052d778980e5d6b8bc016d9141 X-VCS-Branch: master Date: Sat, 2 Sep 2017 12:46:04 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 4b66dc58-360f-4bc3-b1ff-f24cf3047f5b X-Archives-Hash: 7e324671018aee56b6952cb60565bef3 commit: c7d12eab1de43f052d778980e5d6b8bc016d9141 Author: David Seifert gentoo org> AuthorDate: Sat Sep 2 12:45:45 2017 +0000 Commit: David Seifert gentoo org> CommitDate: Sat Sep 2 12:45:45 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c7d12eab sci-biology/bcftools: Remove old sci-biology/bcftools/bcftools-1.3.1.ebuild | 29 ----------------------------- sci-biology/bcftools/bcftools-1.4.ebuild | 29 ----------------------------- sci-biology/bcftools/bcftools-1.5.ebuild | 29 ----------------------------- sci-biology/bcftools/metadata.xml | 15 --------------- 4 files changed, 102 deletions(-) diff --git a/sci-biology/bcftools/bcftools-1.3.1.ebuild b/sci-biology/bcftools/bcftools-1.3.1.ebuild deleted file mode 100644 index b194609b6..000000000 --- a/sci-biology/bcftools/bcftools-1.3.1.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org" -SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die - - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die -} diff --git a/sci-biology/bcftools/bcftools-1.4.ebuild b/sci-biology/bcftools/bcftools-1.4.ebuild deleted file mode 100644 index b194609b6..000000000 --- a/sci-biology/bcftools/bcftools-1.4.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org" -SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die - - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die -} diff --git a/sci-biology/bcftools/bcftools-1.5.ebuild b/sci-biology/bcftools/bcftools-1.5.ebuild deleted file mode 100644 index b194609b6..000000000 --- a/sci-biology/bcftools/bcftools-1.5.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org" -SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die - - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die -} diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml deleted file mode 100644 index d65c87aa3..000000000 --- a/sci-biology/bcftools/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - - - samtools/bcftools - -