From: "David Seifert" <soap@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bcftools/
Date: Sat, 2 Sep 2017 12:46:04 +0000 (UTC) [thread overview]
Message-ID: <1504356345.c7d12eab1de43f052d778980e5d6b8bc016d9141.soap@gentoo> (raw)
commit: c7d12eab1de43f052d778980e5d6b8bc016d9141
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 2 12:45:45 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Sep 2 12:45:45 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c7d12eab
sci-biology/bcftools: Remove old
sci-biology/bcftools/bcftools-1.3.1.ebuild | 29 -----------------------------
sci-biology/bcftools/bcftools-1.4.ebuild | 29 -----------------------------
sci-biology/bcftools/bcftools-1.5.ebuild | 29 -----------------------------
sci-biology/bcftools/metadata.xml | 15 ---------------
4 files changed, 102 deletions(-)
diff --git a/sci-biology/bcftools/bcftools-1.3.1.ebuild b/sci-biology/bcftools/bcftools-1.3.1.ebuild
deleted file mode 100644
index b194609b6..000000000
--- a/sci-biology/bcftools/bcftools-1.3.1.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org"
-SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries
-DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}"
-
-src_prepare(){
- sed -e "s@gcc@$(tc-getCC)@" \
- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \
- -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die
-
- sed -e "s@gcc@$(tc-getCC)@" \
- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \
- -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die
-}
diff --git a/sci-biology/bcftools/bcftools-1.4.ebuild b/sci-biology/bcftools/bcftools-1.4.ebuild
deleted file mode 100644
index b194609b6..000000000
--- a/sci-biology/bcftools/bcftools-1.4.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org"
-SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries
-DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}"
-
-src_prepare(){
- sed -e "s@gcc@$(tc-getCC)@" \
- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \
- -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die
-
- sed -e "s@gcc@$(tc-getCC)@" \
- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \
- -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die
-}
diff --git a/sci-biology/bcftools/bcftools-1.5.ebuild b/sci-biology/bcftools/bcftools-1.5.ebuild
deleted file mode 100644
index b194609b6..000000000
--- a/sci-biology/bcftools/bcftools-1.5.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit toolchain-funcs
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org"
-SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries
-DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}"
-
-src_prepare(){
- sed -e "s@gcc@$(tc-getCC)@" \
- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \
- -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die
-
- sed -e "s@gcc@$(tc-getCC)@" \
- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \
- -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die
-}
diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml
deleted file mode 100644
index d65c87aa3..000000000
--- a/sci-biology/bcftools/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">samtools/bcftools</remote-id>
- </upstream>
-</pkgmetadata>
next reply other threads:[~2017-09-02 12:46 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-09-02 12:46 David Seifert [this message]
-- strict thread matches above, loose matches on Subject: below --
2017-07-28 20:05 [gentoo-commits] proj/sci:master commit in: sci-biology/bcftools/ Martin Mokrejs
2017-04-30 13:31 Martin Mokrejs
2017-02-16 22:16 Martin Mokrejs
2016-06-23 13:51 Martin Mokrejs
2015-03-02 22:36 Martin Mokrejs
2015-01-15 17:44 Christoph Junghans
2015-01-15 17:44 Christoph Junghans
2015-01-15 15:57 Christoph Junghans
2015-01-14 23:26 Martin Mokrejs
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