From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 01FCA139694 for ; Thu, 3 Aug 2017 17:33:29 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 3AB4F1FC016; Thu, 3 Aug 2017 17:33:28 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 0E21F1FC016 for ; Thu, 3 Aug 2017 17:33:27 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 0311D341834 for ; Thu, 3 Aug 2017 17:33:27 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id A136275DD for ; Thu, 3 Aug 2017 17:33:24 +0000 (UTC) From: "Sebastien Fabbro" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Sebastien Fabbro" Message-ID: <1501781584.bac12eae1c20a7fcc573094385b4315c7622a57c.bicatali@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-libs/scikits_learn/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-libs/scikits_learn/scikits_learn-0.18.2-r1.ebuild X-VCS-Directories: sci-libs/scikits_learn/ X-VCS-Committer: bicatali X-VCS-Committer-Name: Sebastien Fabbro X-VCS-Revision: bac12eae1c20a7fcc573094385b4315c7622a57c X-VCS-Branch: master Date: Thu, 3 Aug 2017 17:33:24 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: a529bbe4-65fb-4f27-b0b0-0616752b5c10 X-Archives-Hash: c9c329814dec01f06aaafaaa041b6d1a commit: bac12eae1c20a7fcc573094385b4315c7622a57c Author: Sébastien Fabbro gentoo org> AuthorDate: Wed Aug 2 18:14:55 2017 +0000 Commit: Sebastien Fabbro gentoo org> CommitDate: Thu Aug 3 17:33:04 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bac12eae sci-libs/scikits_learn: keep funcsigs and joblib bundled to avoid hair pulling Package-Manager: Portage-2.3.6, Repoman-2.3.3 .../scikits_learn/scikits_learn-0.18.2-r1.ebuild | 123 +++++++++++++++++++++ 1 file changed, 123 insertions(+) diff --git a/sci-libs/scikits_learn/scikits_learn-0.18.2-r1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.18.2-r1.ebuild new file mode 100644 index 00000000000..339670ff4d3 --- /dev/null +++ b/sci-libs/scikits_learn/scikits_learn-0.18.2-r1.ebuild @@ -0,0 +1,123 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit distutils-r1 flag-o-matic + +MYPN="${PN/scikits_/scikit-}" +MYP="${MYPN}-${PV}" + +DESCRIPTION="Python modules for machine learning and data mining" +HOMEPAGE="http://scikit-learn.org" +SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples test" + +# tried to unbundle virtual/python-funcsigs, funcsigs, odict +# but it is a large mess to maintain + +RDEPEND=" + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + sci-libs/scikits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + virtual/blas:= + virtual/cblas:= +" + +DEPEND=" + dev-python/cython[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + virtual/blas:= + virtual/cblas:= + doc? ( + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + ) +" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}/${PN}-0.18.1-system-cblas.patch" ) + +python_prepare_all() { + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + + # remove bundled cblas + rm -r sklearn/src || die + + # commented out, since it is a mess to maintain + # use system joblib + #rm -r sklearn/externals/joblib || die + #sed -i -e '/joblib/d' sklearn/externals/setup.py || die + #for f in sklearn/{*/,}*.py; do + # sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ + # -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die + #done + + # use system funcsigs and odict + #rm sklearn/externals/funcsigs.py || die + #rm sklearn/externals/odict.py || die + #for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do + # sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die + #done + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_compile_all() { + if use doc; then + cd "${S}/doc" || die + local d="${BUILD_DIR}/lib" + ln -s \ + "${S}"/sklearn/datasets/{data,descr,images} \ + "${d}"/sklearn/datasets || die + VARTEXFONTS="${T}"/fonts \ + MPLCONFIGDIR="${BUILD_DIR}" \ + PYTHONPATH="${d}" \ + emake html + rm -r "${d}"/sklearn/datasets/{data,descr,images} || die + fi +} + +python_test() { + # doc builds and runs tests + use doc && return + distutils_install_for_testing ${SCIPY_FCONFIG} + esetup.py install \ + --root="${T}/test-${EPYTHON}" \ + --no-compile ${SCIPY_FCONFIG} + pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null + JOBLIB_MULTIPROCESSING=2 SKLEARN_SKIP_NETWORK_TESTS=1 nosetests -v sklearn --exe || die + popd > /dev/null +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + insinto /usr/share/doc/${PF} + use doc && doins -r doc/_build/html + use examples && doins -r examples + distutils-r1_python_install_all +}