From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1PuRXq-00027P-Px for garchives@archives.gentoo.org; Tue, 01 Mar 2011 15:31:27 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 815EAE0345; Tue, 1 Mar 2011 15:31:18 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 556B2E0345 for ; Tue, 1 Mar 2011 15:31:18 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-CAMELLIA256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E8BA91B4037 for ; Tue, 1 Mar 2011 15:31:17 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 4965E8006A for ; Tue, 1 Mar 2011 15:31:17 +0000 (UTC) From: "Alexey Shvetsov" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Alexey Shvetsov" Message-ID: <14c06611ed982ae4aaf87b11edc18af2b1171c20.alexxy@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-chemistry/gromacs/ X-VCS-Repository: proj/sci X-VCS-Files: sci-chemistry/gromacs/gromacs-4.5.9999.ebuild sci-chemistry/gromacs/gromacs-9999.ebuild X-VCS-Directories: sci-chemistry/gromacs/ X-VCS-Committer: alexxy X-VCS-Committer-Name: Alexey Shvetsov X-VCS-Revision: 14c06611ed982ae4aaf87b11edc18af2b1171c20 Date: Tue, 1 Mar 2011 15:31:17 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: 6d275c71ce80b5b304156191d8e44769 commit: 14c06611ed982ae4aaf87b11edc18af2b1171c20 Author: Alexey Shvetsov gentoo org> AuthorDate: Tue Mar 1 15:31:39 2011 +0000 Commit: Alexey Shvetsov gentoo org> CommitDate: Tue Mar 1 15:31:39 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3D14c06611 Add epatch_user back for gromacs live ebuilds (Portage version: 2.2.0_alpha25/git/Linux x86_64, signed Manifest commit = with key F82F92E6) --- sci-chemistry/gromacs/gromacs-4.5.9999.ebuild | 5 ++++- sci-chemistry/gromacs/gromacs-9999.ebuild | 5 ++++- 2 files changed, 8 insertions(+), 2 deletions(-) diff --git a/sci-chemistry/gromacs/gromacs-4.5.9999.ebuild b/sci-chemistr= y/gromacs/gromacs-4.5.9999.ebuild index ac987b2..111bb37 100644 --- a/sci-chemistry/gromacs/gromacs-4.5.9999.ebuild +++ b/sci-chemistry/gromacs/gromacs-4.5.9999.ebuild @@ -8,7 +8,7 @@ LIBTOOLIZE=3D"true" TEST_PV=3D"4.0.4" MANUAL_PV=3D"4.5.3" =20 -inherit autotools-utils bash-completion flag-o-matic multilib toolchain-= funcs +inherit autotools-utils bash-completion eutils flag-o-matic multilib too= lchain-funcs =20 SRC_URI=3D"test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${TEST_PV}.tg= z ) doc? ( @@ -52,6 +52,9 @@ QA_EXECSTACK=3D"usr/lib/libgmx.so.* usr/lib/libgmx_d.so.*" =20 src_prepare() { + #add user patches from /etc/portage/patches/sci-chemistry/gromacs + epatch_user + if use mpi && use threads; then elog "mdrun uses only threads OR mpi, and gromacs favours the" elog "use of mpi over threads, so a mpi-version of mdrun will" diff --git a/sci-chemistry/gromacs/gromacs-9999.ebuild b/sci-chemistry/gr= omacs/gromacs-9999.ebuild index b6f5119..15dbf24 100644 --- a/sci-chemistry/gromacs/gromacs-9999.ebuild +++ b/sci-chemistry/gromacs/gromacs-9999.ebuild @@ -10,7 +10,7 @@ TEST_PV=3D"4.0.4" EGIT_REPO_URI=3D"git://git.gromacs.org/gromacs" EGIT_BRANCH=3D"master" =20 -inherit bash-completion cmake-utils git multilib toolchain-funcs +inherit bash-completion cmake-utils eutils git multilib toolchain-funcs =20 DESCRIPTION=3D"The ultimate molecular dynamics simulation package" HOMEPAGE=3D"http://www.gromacs.org/" @@ -44,6 +44,9 @@ QA_EXECSTACK=3D"usr/lib/libgmx.so.* usr/lib/libgmx_d.so.*" =20 src_prepare() { + #add user patches from /etc/portage/patches/sci-chemistry/gromacs + epatch_user + if use mpi && use threads; then elog "mdrun uses only threads OR mpi, and gromacs favours the" elog "use of mpi over threads, so a mpi-version of mdrun will"