[gentoo-commits] repo/gentoo:master commit in: dev-lang/R/

["Justin Lecher" <jlec@gentoo.org>]

commit:     4b6dbfc8fecf27837182a473fb5635df3ba977e6
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 11 19:29:09 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 11 19:30:21 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b6dbfc8

dev-lang/R: Drop version failing with only zlib in tree

Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 dev-lang/R/Manifest       |   1 -
 dev-lang/R/R-3.3.1.ebuild | 200 ----------------------------------------------
 2 files changed, 201 deletions(-)

diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 9403f0b02c9..075c16f710d 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,6 +1,5 @@
 DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
 DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
-DIST R-3.3.1.tar.gz 29848329 SHA256 3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512 d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd WHIRLPOOL 6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151
 DIST R-3.3.2.tar.gz 29440670 SHA256 d294ad21e9f574fb4828ebb3a94b8cb34f4f304a41687a994be00dd41a4e514c SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482 WHIRLPOOL a68112df87552cc6ca8cd6b78b99dda2a22b8f4cfcd87a4512d541d25ef21358ede1ba71b4d7e9f274bf4e4340de18355a777d9af2ed41c0a498fa11d91cf0d8
 DIST R-3.4.1.tar.gz 30200109 SHA256 02b1135d15ea969a3582caeb95594a05e830a6debcdb5b85ed2d5836a6a3fc78 SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651 WHIRLPOOL 1396303a7ef7a0e8920af867e6b68e171152578231c9a7ad5020b494124922aae634c1ce6d0f2b2f8441481736b93c3abffe142f2af78dbb0dbc754c4faec3f1
 DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 SHA256 7e452a23e0bd96b1076280448d130adab229b8ea37cd4531db77391868a31e97 SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06 WHIRLPOOL 49fd55e6a52d55f0aa15d3a117394793b6fba6f1b69a26911a2b2d7c40a65c8ec2246851edc3abb52849930c48e817ee62319ae8bc1db0a9b802c95fcb1554e0

diff --git a/dev-lang/R/R-3.3.1.ebuild b/dev-lang/R/R-3.3.1.ebuild
deleted file mode 100644
index 05155cdb3ca..00000000000
--- a/dev-lang/R/R-3.3.1.ebuild
+++ /dev/null
@@ -1,200 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
-	mirror://cran/src/base/R-3/${P}.tar.gz
-	https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
-	app-arch/bzip2:0=
-	app-arch/xz-utils:0=
-	app-text/ghostscript-gpl
-	>=dev-libs/libpcre-8.35:3=
-	virtual/blas:0
-	|| ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
-	cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
-	icu? ( dev-libs/icu:= )
-	jpeg? ( virtual/jpeg:0 )
-	lapack? ( virtual/lapack:0 )
-	perl? ( dev-lang/perl )
-	png? ( media-libs/libpng:0= )
-	readline? ( sys-libs/readline:0= )
-	tiff? ( media-libs/tiff:0= )
-	tk? ( dev-lang/tk:0= )
-	X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
-	virtual/pkgconfig
-	doc? (
-		virtual/latex-base
-		dev-texlive/texlive-fontsrecommended
-	)"
-
-RDEPEND="${CDEPEND}
-	>=sys-libs/zlib-1.2.5.1-r2:0[minizip]
-	java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-pkg_setup() {
-	if use openmp; then
-		if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
-			ewarn "OpenMP is not available in your current selected gcc"
-			die "need openmp capable gcc"
-		fi
-		FORTRAN_NEED_OPENMP=1
-	fi
-	fortran-2_pkg_setup
-	filter-ldflags -Wl,-Bdirect -Bdirect
-	# avoid using existing R installation
-	unset R_HOME
-	# Temporary fix for bug #419761
-	if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
-		append-flags -fno-ipa-cp-clone
-	fi
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-2.11.1-parallel.patch \
-		"${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
-		"${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
-	# fix packages.html for doc (gentoo bug #205103)
-	sed -i \
-		-e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
-		src/library/tools/R/Rd.R || die
-
-	# fix Rscript path when installed (gentoo bug #221061)
-	sed -i \
-		-e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
-		src/unix/Makefile.in || die "sed unix Makefile failed"
-
-	# fix HTML links to manual (gentoo bug #273957)
-	sed -i \
-		-e 's:\.\./manual/:manual/:g' \
-		$(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
-	use lapack && \
-		export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
-	if use X; then
-		export R_BROWSER="$(type -p xdg-open)"
-		export R_PDFVIEWER="$(type -p xdg-open)"
-	fi
-	use perl && \
-		export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
-	# don't search /usr/local
-	sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-	# Fix for Darwin (OS X)
-	if use prefix; then
-		if [[ ${CHOST} == *-darwin* ]] ; then
-			sed -i \
-				-e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
-				-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
-				-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
-				-e "/SHLIB_EXT/s/\.so/.dylib/" \
-				configure.ac || die
-			# sort of "undo" 2.14.1-rmath-shared.patch
-			sed -i \
-				-e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
-				src/nmath/standalone/Makefile.in || die
-		else
-			append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
-		fi
-	fi
-	AT_M4DIR=m4 eaclocal
-	eautoconf
-}
-
-src_configure() {
-	#	--with-system-tre \
-	# tre is patched from upstream
-	econf \
-		--enable-byte-compiled-packages \
-		--enable-R-shlib \
-		--disable-R-framework \
-		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
-		--docdir="${EPREFIX}/usr/share/doc/${PF}" \
-		rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
-		$(use_enable java) \
-		$(use_enable nls) \
-		$(use_enable openmp) \
-		$(use_enable profile R-profiling) \
-		$(use_enable profile memory-profiling) \
-		$(use_enable static-libs static) \
-		$(use_enable static-libs R-static-lib) \
-		$(use_with cairo) \
-		$(use_with icu ICU) \
-		$(use_with jpeg jpeglib) \
-		$(use_with lapack) \
-		$(use_with !minimal recommended-packages) \
-		$(use_with png libpng) \
-		$(use_with readline) \
-		$(use_with tiff libtiff) \
-		$(use_with tk tcltk) \
-		$(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
-		$(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
-		$(use_with X x)
-}
-
-src_compile() {
-	export VARTEXFONTS="${T}/fonts"
-	emake AR="$(tc-getAR)"
-	emake -C src/nmath/standalone \
-		shared $(use static-libs && echo static) AR="$(tc-getAR)"
-	use doc && emake info pdf
-}
-
-src_install() {
-	default
-	emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
-	if use doc; then
-		emake DESTDIR="${D}" install-info install-pdf
-		dosym ../manual /usr/share/doc/${PF}/html/manual
-	fi
-
-	cat > 99R <<-EOF
-		LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
-		R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
-	EOF
-	doenvd 99R
-	newbashcomp "${WORKDIR}"/${BCP} ${PN}
-	# The buildsystem has a different understanding of install_names than
-	# we require.  Since it builds modules like shared objects (wrong), many
-	# objects (all modules) get an incorrect install_name.  Fixing the build
-	# system here is not really trivial.
-	if [[ ${CHOST} == *-darwin* ]] ; then
-		local mod
-		pushd "${ED}"/usr/lib/R > /dev/null
-		for mod in $(find . -name "*.dylib") ; do
-			mod=${mod#./}
-			install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
-				"${mod}"
-		done
-		popd > /dev/null
-	fi
-	docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
-	if use java; then
-		einfo "Re-initializing java paths for ${P}"
-		R CMD javareconf
-	fi
-}