* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/pymc3/
@ 2017-01-07 1:01 Sebastien Fabbro
0 siblings, 0 replies; 6+ messages in thread
From: Sebastien Fabbro @ 2017-01-07 1:01 UTC (permalink / raw
To: gentoo-commits
commit: 5086e10641adfda004c4906e47c660e4237dcc34
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 5 04:52:53 2017 +0000
Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org>
CommitDate: Sat Jan 7 01:00:55 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5086e106
sci-mathematics/pymc3: initial import
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-mathematics/pymc3/Manifest | 1 +
sci-mathematics/pymc3/metadata.xml | 18 +++++++++
sci-mathematics/pymc3/pymc3-3.0_rc6.ebuild | 60 ++++++++++++++++++++++++++++++
3 files changed, 79 insertions(+)
diff --git a/sci-mathematics/pymc3/Manifest b/sci-mathematics/pymc3/Manifest
new file mode 100644
index 00000000..4d99be0
--- /dev/null
+++ b/sci-mathematics/pymc3/Manifest
@@ -0,0 +1 @@
+DIST pymc3-3.0rc6.tar.gz 992525 SHA256 8df5a190218d3eea2655915847aad9c87ae9719cc507c5c3e24ec4973408051d SHA512 54534e07f61dbf1b499a2d9e249512d1475074bcf67612b36ab3b72456945eb6af4a450d6739195891f0d398612304861c23fe4a222304e1609240ba348f1792 WHIRLPOOL 251d85ac949569000d5b188a40645548389dbed8fd47f9f21ee6c6569805b3f5350185f6f0247022fd08e46fd4f41f137167b9eba3814e43afb88a09623d95f3
diff --git a/sci-mathematics/pymc3/metadata.xml b/sci-mathematics/pymc3/metadata.xml
new file mode 100644
index 00000000..d212131
--- /dev/null
+++ b/sci-mathematics/pymc3/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="project">
+ <email>sci-mathematics@gentoo.org</email>
+ <name>Gentoo Mathematics Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ PyMC3 is a Python package for Bayesian statistical modeling and
+ Probabilistic Machine Learning which focuses on advanced Markov
+ chain Monte Carlo and variational fitting algorithms. Its
+ flexibility and extensibility make it applicable to a large suite
+ of problems.
+ </longdescription>
+ <upstream>
+ <remote-id type="github">pymc-devs/pymc3</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/sci-mathematics/pymc3/pymc3-3.0_rc6.ebuild b/sci-mathematics/pymc3/pymc3-3.0_rc6.ebuild
new file mode 100644
index 00000000..ea20888
--- /dev/null
+++ b/sci-mathematics/pymc3/pymc3-3.0_rc6.ebuild
@@ -0,0 +1,60 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+
+inherit distutils-r1 virtualx xdg-utils
+
+MYP=${P/_}
+S="${WORKDIR}/${MYP}"
+
+DESCRIPTION="Bayesian Modeling and Probabilistic Machine Learning in Python"
+HOMEPAGE="http://pymc-devs.github.io/pymc3/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${MYP}.tar.gz"
+
+SLOT=0
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="AFL-3.0"
+
+IUSE="test"
+
+RDEPEND="
+ <=dev-python/CommonMark-0.5.4[${PYTHON_USEDEP}]
+ >=dev-python/joblib-0.9[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.11[${PYTHON_USEDEP},lapack]
+ >=dev-python/matplotlib-1.5[${PYTHON_USEDEP}]
+ dev-python/nbsphinx[${PYTHON_USEDEP}]
+ dev-python/numpydoc[${PYTHON_USEDEP}]
+ >=dev-python/pandas-0.18[${PYTHON_USEDEP}]
+ >=dev-python/patsy-0.4[${PYTHON_USEDEP}]
+ >=dev-python/recommonmark-0.4[${PYTHON_USEDEP}]
+ dev-python/sphinx[${PYTHON_USEDEP}]
+ >=dev-python/theano-0.8.2[${PYTHON_USEDEP}]
+ >=dev-python/tqdm-4.8.4[${PYTHON_USEDEP}]
+ >=sci-libs/scipy-0.12[${PYTHON_USEDEP}]
+ virtual/python-enum34[${PYTHON_USEDEP}]
+"
+DEPEND="
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ dev-python/cython[${PYTHON_USEDEP}]
+ test? (
+ ${RDEPEND}
+ dev-python/nose[${PYTHON_USEDEP}]
+ )
+"
+
+DOCS=(CHANGELOG.md CONTRIBUTING.md RELEASE-NOTES.md
+ CONDUCT.md GOVERNANCE.md README.rst)
+
+python_prepare_all() {
+ xdg_environment_reset
+ distutils-r1_python_prepare_all
+}
+
+python_test() {
+ echo 'backend: agg' > matplotlibrc || die
+ virtx esetup.py test
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/pymc3/
@ 2017-06-28 4:02 Sebastien Fabbro
0 siblings, 0 replies; 6+ messages in thread
From: Sebastien Fabbro @ 2017-06-28 4:02 UTC (permalink / raw
To: gentoo-commits
commit: 5ee57cb42b9d714d99778d80a5d6b504f7382189
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 27 20:37:30 2017 +0000
Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org>
CommitDate: Wed Jun 28 04:00:13 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5ee57cb4
sci-mathematics/pymc3: version bump
Package-Manager: Portage-2.3.6, Repoman-2.3.2
sci-mathematics/pymc3/Manifest | 2 +-
sci-mathematics/pymc3/{pymc3-3.0_rc6.ebuild => pymc3-3.1.ebuild} | 5 +++--
2 files changed, 4 insertions(+), 3 deletions(-)
diff --git a/sci-mathematics/pymc3/Manifest b/sci-mathematics/pymc3/Manifest
index 4d99be0e4a3..d183c7e71f6 100644
--- a/sci-mathematics/pymc3/Manifest
+++ b/sci-mathematics/pymc3/Manifest
@@ -1 +1 @@
-DIST pymc3-3.0rc6.tar.gz 992525 SHA256 8df5a190218d3eea2655915847aad9c87ae9719cc507c5c3e24ec4973408051d SHA512 54534e07f61dbf1b499a2d9e249512d1475074bcf67612b36ab3b72456945eb6af4a450d6739195891f0d398612304861c23fe4a222304e1609240ba348f1792 WHIRLPOOL 251d85ac949569000d5b188a40645548389dbed8fd47f9f21ee6c6569805b3f5350185f6f0247022fd08e46fd4f41f137167b9eba3814e43afb88a09623d95f3
+DIST pymc3-3.1.tar.gz 34553828 SHA256 218e412408cd5f0bc0e6984404bcaadd32f80c4ef523ac8718c1f0c3fd8c4e28 SHA512 30799d9c1b670adbcf5cc1463029d71a87c7b917e83b1f6cb453d75553616da7173421e7ae6e31b332c85f8170daea735344ff83ba6605cf3b15cf79c5c4fb97 WHIRLPOOL bbc2a7304926bbebbb06c358503ed0ebec7de20c171ea1123eb8a978a4a5407ecb6f0cc6055cd22c6a58571315ad3e877b6317d18b8b02794b4d6c7bade10b79
diff --git a/sci-mathematics/pymc3/pymc3-3.0_rc6.ebuild b/sci-mathematics/pymc3/pymc3-3.1.ebuild
similarity index 91%
rename from sci-mathematics/pymc3/pymc3-3.0_rc6.ebuild
rename to sci-mathematics/pymc3/pymc3-3.1.ebuild
index efdcbba9e99..0361603fbe9 100644
--- a/sci-mathematics/pymc3/pymc3-3.0_rc6.ebuild
+++ b/sci-mathematics/pymc3/pymc3-3.1.ebuild
@@ -3,7 +3,7 @@
EAPI=6
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
inherit distutils-r1 virtualx xdg-utils
@@ -31,7 +31,7 @@ RDEPEND="
>=dev-python/patsy-0.4[${PYTHON_USEDEP}]
>=dev-python/recommonmark-0.4[${PYTHON_USEDEP}]
dev-python/sphinx[${PYTHON_USEDEP}]
- >=dev-python/theano-0.8.2[${PYTHON_USEDEP}]
+ >=dev-python/theano-0.9[${PYTHON_USEDEP}]
>=dev-python/tqdm-4.8.4[${PYTHON_USEDEP}]
>=sci-libs/scipy-0.12[${PYTHON_USEDEP}]
virtual/python-enum34[${PYTHON_USEDEP}]
@@ -42,6 +42,7 @@ DEPEND="
test? (
${RDEPEND}
dev-python/nose[${PYTHON_USEDEP}]
+ dev-python/nose-parameterized[${PYTHON_USEDEP}]
)
"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/pymc3/
@ 2018-05-20 2:30 Aaron Bauman
0 siblings, 0 replies; 6+ messages in thread
From: Aaron Bauman @ 2018-05-20 2:30 UTC (permalink / raw
To: gentoo-commits
commit: 59ceecc592c49f454e33025b5d8b136ab5bb12c7
Author: Gabriel Linder <linder.gabriel <AT> gmail <DOT> com>
AuthorDate: Wed Mar 14 20:55:44 2018 +0000
Commit: Aaron Bauman <bman <AT> gentoo <DOT> org>
CommitDate: Sun May 20 02:29:58 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=59ceecc5
sci-mathematics/pymc3: Fix installation error, bug #632334
Closes: https://bugs.gentoo.org/632334
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Closes: https://github.com/gentoo/gentoo/pull/7463
sci-mathematics/pymc3/pymc3-3.1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-mathematics/pymc3/pymc3-3.1.ebuild b/sci-mathematics/pymc3/pymc3-3.1.ebuild
index 0361603fbe9..658b90729d1 100644
--- a/sci-mathematics/pymc3/pymc3-3.1.ebuild
+++ b/sci-mathematics/pymc3/pymc3-3.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -46,7 +46,7 @@ DEPEND="
)
"
-DOCS=(CHANGELOG.md CONTRIBUTING.md RELEASE-NOTES.md
+DOCS=(CONTRIBUTING.md RELEASE-NOTES.md
CONDUCT.md GOVERNANCE.md README.rst)
python_prepare_all() {
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/pymc3/
@ 2019-12-04 17:15 Michał Górny
0 siblings, 0 replies; 6+ messages in thread
From: Michał Górny @ 2019-12-04 17:15 UTC (permalink / raw
To: gentoo-commits
commit: a5b6f02c4156fbbe2b1d90a907c9fe3ef00268fc
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Mon Dec 2 10:23:27 2019 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Dec 4 17:13:13 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a5b6f02c
sci-mathematics/pymc3: Remove py2
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
sci-mathematics/pymc3/pymc3-3.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-mathematics/pymc3/pymc3-3.1.ebuild b/sci-mathematics/pymc3/pymc3-3.1.ebuild
index 9fe032ad4a5..7a763812604 100644
--- a/sci-mathematics/pymc3/pymc3-3.1.ebuild
+++ b/sci-mathematics/pymc3/pymc3-3.1.ebuild
@@ -3,7 +3,7 @@
EAPI=6
-PYTHON_COMPAT=( python{2_7,3_5,3_6} )
+PYTHON_COMPAT=( python{3_5,3_6} )
inherit distutils-r1 virtualx xdg-utils
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/pymc3/
@ 2020-03-16 18:55 Michał Górny
0 siblings, 0 replies; 6+ messages in thread
From: Michał Górny @ 2020-03-16 18:55 UTC (permalink / raw
To: gentoo-commits
commit: 1e63e87e620b8e1bccdfaf7b3830ba4edc1bb4c7
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Mon Mar 16 18:45:00 2020 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Mon Mar 16 18:45:00 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1e63e87e
sci-mathematics/pymc3: Remove py2 virtuals
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
sci-mathematics/pymc3/pymc3-3.1.ebuild | 1 -
1 file changed, 1 deletion(-)
diff --git a/sci-mathematics/pymc3/pymc3-3.1.ebuild b/sci-mathematics/pymc3/pymc3-3.1.ebuild
index 1b1dad62cb0..3c95b008123 100644
--- a/sci-mathematics/pymc3/pymc3-3.1.ebuild
+++ b/sci-mathematics/pymc3/pymc3-3.1.ebuild
@@ -35,7 +35,6 @@ RDEPEND="
>=dev-python/theano-0.9[${PYTHON_USEDEP}]
>=dev-python/tqdm-4.8.4[${PYTHON_USEDEP}]
>=sci-libs/scipy-0.12[${PYTHON_USEDEP}]
- virtual/python-enum34[${PYTHON_USEDEP}]
"
DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-mathematics/pymc3/
@ 2020-05-14 10:38 Michał Górny
0 siblings, 0 replies; 6+ messages in thread
From: Michał Górny @ 2020-05-14 10:38 UTC (permalink / raw
To: gentoo-commits
commit: 2b72e882705a31d22f1f480d32842f318fb89385
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Thu May 14 10:37:37 2020 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Thu May 14 10:38:41 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2b72e882
sci-mathematics/pymc3: Remove unused dep on (re)commonmark
A quick grep suggests that (re)commonmark is used only for doc building.
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
sci-mathematics/pymc3/{pymc3-3.1.ebuild => pymc3-3.1-r1.ebuild} | 2 --
1 file changed, 2 deletions(-)
diff --git a/sci-mathematics/pymc3/pymc3-3.1.ebuild b/sci-mathematics/pymc3/pymc3-3.1-r1.ebuild
similarity index 93%
rename from sci-mathematics/pymc3/pymc3-3.1.ebuild
rename to sci-mathematics/pymc3/pymc3-3.1-r1.ebuild
index 3c95b008123..b631808b810 100644
--- a/sci-mathematics/pymc3/pymc3-3.1.ebuild
+++ b/sci-mathematics/pymc3/pymc3-3.1-r1.ebuild
@@ -22,7 +22,6 @@ IUSE="test"
RESTRICT="!test? ( test )"
RDEPEND="
- <=dev-python/commonmark-0.5.4[${PYTHON_USEDEP}]
>=dev-python/joblib-0.9[${PYTHON_USEDEP}]
>=dev-python/numpy-1.11[${PYTHON_USEDEP},lapack]
>=dev-python/matplotlib-1.5[${PYTHON_USEDEP}]
@@ -30,7 +29,6 @@ RDEPEND="
dev-python/numpydoc[${PYTHON_USEDEP}]
>=dev-python/pandas-0.18[${PYTHON_USEDEP}]
>=dev-python/patsy-0.4[${PYTHON_USEDEP}]
- >=dev-python/recommonmark-0.4[${PYTHON_USEDEP}]
dev-python/sphinx[${PYTHON_USEDEP}]
>=dev-python/theano-0.9[${PYTHON_USEDEP}]
>=dev-python/tqdm-4.8.4[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 6+ messages in thread
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