From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 2BC78139694 for ; Mon, 15 May 2017 15:56:56 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id D10AFE0C56; Mon, 15 May 2017 15:56:53 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id A8F9BE0C56 for ; Mon, 15 May 2017 15:56:52 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E8368341693 for ; Mon, 15 May 2017 15:56:51 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 891B87447 for ; Mon, 15 May 2017 15:56:50 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1494863799.bcdbe7d68fad5b1056f370020f236e543952ee4f.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/jellyfish/jellyfish-2.2.6.ebuild X-VCS-Directories: sci-biology/jellyfish/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: bcdbe7d68fad5b1056f370020f236e543952ee4f X-VCS-Branch: master Date: Mon, 15 May 2017 15:56:50 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: c43f085c-b950-4215-ab6d-c9532b75abbb X-Archives-Hash: 18316c2bb4156c50cab8ef9267e1d222 commit: bcdbe7d68fad5b1056f370020f236e543952ee4f Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Mon May 15 15:56:39 2017 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon May 15 15:56:39 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bcdbe7d6 sci-biology/jellyfish: point SRC_URI to proper tarball, drop yaggo DEPENDency This tarball really doe snot need yaggo for building. See for whole discussion: https://github.com/gmarcais/Jellyfish/issues/87 Package-Manager: Portage-2.3.5, Repoman-2.3.2 sci-biology/jellyfish/jellyfish-2.2.6.ebuild | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/sci-biology/jellyfish/jellyfish-2.2.6.ebuild b/sci-biology/jellyfish/jellyfish-2.2.6.ebuild index 6c3ce948b..af91bd892 100644 --- a/sci-biology/jellyfish/jellyfish-2.2.6.ebuild +++ b/sci-biology/jellyfish/jellyfish-2.2.6.ebuild @@ -7,7 +7,7 @@ inherit eutils flag-o-matic autotools DESCRIPTION="k-mer counter within reads for assemblies" HOMEPAGE="http://www.genome.umd.edu/jellyfish.html" -SRC_URI="https://github.com/gmarcais/Jellyfish/archive/v2.2.6.tar.gz -> ${P}.tar.gz +SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf" # older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 @@ -17,12 +17,10 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="cpu_flags_x86_sse" -RDEPEND="dev-lang/yaggo" +RDEPEND="" DEPEND="${RDEPEND} virtual/pkgconfig" -S="${WORKDIR}/Jellyfish-${PV}" - src_prepare(){ eautoreconf default