From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/velvet/
Date: Sat, 22 Apr 2017 16:09:55 +0000 (UTC) [thread overview]
Message-ID: <1492877391.3cc49dd6ca6d216bfc03f0d4629d806670530d7b.jlec@gentoo> (raw)
commit: 3cc49dd6ca6d216bfc03f0d4629d806670530d7b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr 14 09:52:36 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Apr 22 16:09:51 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3cc49dd6
sci-biology/velvet: simplify tests in ebuild
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Closes: https://github.com/gentoo/gentoo/pull/4421
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/velvet/velvet-1.2.10.ebuild | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/sci-biology/velvet/velvet-1.2.10.ebuild b/sci-biology/velvet/velvet-1.2.10.ebuild
index 53f5dd644f9..31560aee188 100644
--- a/sci-biology/velvet/velvet-1.2.10.ebuild
+++ b/sci-biology/velvet/velvet-1.2.10.ebuild
@@ -26,7 +26,7 @@ src_prepare() {
if ! use doc; then
sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
fi
- elog "Upstream recommendes using -O3 in CFLAGS"
+ elog "Upstream recommends using -O3 in CFLAGS"
echo
elog "To adjust the MAXKMERLENGTH, CATEGORIES, BIGASSEMBLY, LONGSEQUENCES parameters"
elog "as described in the PDF manual, please set the variables by prepending VELVET_ in"
@@ -53,11 +53,11 @@ src_prepare() {
CFLAGS="${CFLAGS}"
OPT="${CFLAGS}"
)
- if use openmp; then MAKE_XOPTS+=( OPENMP=1 ); fi
- if [[ ${VELVET_MAXKMERLENGTH} != "" ]]; then MAKE_XOPTS+=( MAXKMERLENGTH=${VELVET_MAXKMERLENGTH} ); fi
- if [[ ${VELVET_CATEGORIES} != "" ]]; then MAKE_XOPTS+=( CATEGORIES=${VELVET_CATEGORIES} ); fi
- if [[ ${VELVET_BIGASSEMBLY} != "" ]]; then MAKE_XOPTS+=( BIGASSEMBLY=${VELVET_BIGASSEMBLY} ); fi
- if [[ ${VELVET_LONGSEQUENCES} != "" ]]; then MAKE_XOPTS+=( LONGSEQUENCES=${VELVET_LONGSEQUENCES} ); fi
+ use openmp && MAKE_XOPTS+=( OPENMP=1 )
+ test "${VELVET_MAXKMERLENGTH}" != "" && MAKE_XOPTS+=( MAXKMERLENGTH=${VELVET_MAXKMERLENGTH} )
+ test "${VELVET_CATEGORIES}" != "" && MAKE_XOPTS+=( CATEGORIES=${VELVET_CATEGORIES} )
+ test "${VELVET_BIGASSEMBLY}" != "" && MAKE_XOPTS+=( BIGASSEMBLY=${VELVET_BIGASSEMBLY} )
+ test "${VELVET_LONGSEQUENCES}" != "" && MAKE_XOPTS+=( LONGSEQUENCES=${VELVET_LONGSEQUENCES} )
}
src_compile() {
next reply other threads:[~2017-04-22 16:09 UTC|newest]
Thread overview: 8+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-04-22 16:09 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2024-05-08 10:45 [gentoo-commits] repo/gentoo:master commit in: sci-biology/velvet/ Sam James
2021-08-22 19:38 David Seifert
2018-05-21 17:05 Aaron Bauman
2017-09-02 14:56 Michael Palimaka
2017-04-22 16:09 Justin Lecher
2017-04-22 16:09 Justin Lecher
2017-04-22 16:09 Justin Lecher
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