[gentoo-commits] proj/sci:master commit in: dev-python/ngslib/

[gentoo-commits] proj/sci:master commit in: dev-python/ngslib/

[Martin Mokrejs]

commit:     a49693d0c2a28c3fa680e18fbb42a0a3d29079f5
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr 20 16:53:29 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr 20 16:53:29 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a49693d0

dev-python/ngslib: new package

Package-Manager: Portage-2.3.5, Repoman-2.3.2

 dev-python/ngslib/metadata.xml         | 12 ++++++++++++
 dev-python/ngslib/ngslib-1.1.19.ebuild | 23 +++++++++++++++++++++++
 2 files changed, 35 insertions(+)

diff --git a/dev-python/ngslib/metadata.xml b/dev-python/ngslib/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/dev-python/ngslib/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/dev-python/ngslib/ngslib-1.1.19.ebuild b/dev-python/ngslib/ngslib-1.1.19.ebuild
new file mode 100644
index 000000000..5885bce3c
--- /dev/null
+++ b/dev-python/ngslib/ngslib-1.1.19.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+inherit distutils-r1
+
+DESCRIPTION="Work with BED, WIG, BigWIG, 2bit files in python"
+HOMEPAGE="https://pypi.python.org/pypi/ngslib"
+SRC_URI="https://pypi.python.org/packages/da/90/862bde7ea3e7a1f064872f51200b1558efa7c58df8131c39352f1c35fbdd/${P}.tar.gz"
+
+LICENSE="GPL-3" # but Jim Kent's lib is 'for personal, academic and non-profit use only'
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="
+	>=sci-biology/pysam-0.8.2
+	>=dev-python/numpy-1.4.1"
+RDEPEND="${DEPEND}"
+
+# contains bundled Jim Kent's library jkweb.a, probab;y do 'rm -rf ./external'

[gentoo-commits] proj/sci:master commit in: dev-python/ngslib/

[Aisha Tammy]

commit:     e9f401c8f2a519871036944b7c5eefc3377e7000
Author:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Wed Oct  7 01:15:50 2020 +0000
Commit:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Wed Oct  7 01:15:50 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e9f401c8

dev-python/ngslib: drop dead package

Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>

 dev-python/ngslib/metadata.xml         | 12 ------------
 dev-python/ngslib/ngslib-1.1.19.ebuild | 23 -----------------------
 2 files changed, 35 deletions(-)

diff --git a/dev-python/ngslib/metadata.xml b/dev-python/ngslib/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/dev-python/ngslib/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/dev-python/ngslib/ngslib-1.1.19.ebuild b/dev-python/ngslib/ngslib-1.1.19.ebuild
deleted file mode 100644
index 5885bce3c..000000000
--- a/dev-python/ngslib/ngslib-1.1.19.ebuild
+++ /dev/null
@@ -1,23 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-inherit distutils-r1
-
-DESCRIPTION="Work with BED, WIG, BigWIG, 2bit files in python"
-HOMEPAGE="https://pypi.python.org/pypi/ngslib"
-SRC_URI="https://pypi.python.org/packages/da/90/862bde7ea3e7a1f064872f51200b1558efa7c58df8131c39352f1c35fbdd/${P}.tar.gz"
-
-LICENSE="GPL-3" # but Jim Kent's lib is 'for personal, academic and non-profit use only'
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="
-	>=sci-biology/pysam-0.8.2
-	>=dev-python/numpy-1.4.1"
-RDEPEND="${DEPEND}"
-
-# contains bundled Jim Kent's library jkweb.a, probab;y do 'rm -rf ./external'