* [gentoo-commits] repo/gentoo:master commit in: sci-biology/trnascan-se/
@ 2017-04-14 19:00 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2017-04-14 19:00 UTC (permalink / raw
To: gentoo-commits
commit: 196ce403dba6344ab0a3924ffad33799657e8103
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Apr 14 18:07:20 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Apr 14 18:59:56 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=196ce403
sci-biology/trnascan-se: Bump EAPI to 6
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/trnascan-se/trnascan-se-1.31.ebuild | 15 ++++++++-------
1 file changed, 8 insertions(+), 7 deletions(-)
diff --git a/sci-biology/trnascan-se/trnascan-se-1.31.ebuild b/sci-biology/trnascan-se/trnascan-se-1.31.ebuild
index ca55fdd5e0f..04ff8bd610e 100644
--- a/sci-biology/trnascan-se/trnascan-se-1.31.ebuild
+++ b/sci-biology/trnascan-se/trnascan-se-1.31.ebuild
@@ -1,11 +1,9 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=6
-PERL_EXPORT_PHASE_FUNCTIONS=no
-
-inherit eutils perl-module toolchain-funcs
+inherit perl-functions toolchain-funcs
DESCRIPTION="tRNA detection in large-scale genome sequences"
HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
@@ -18,9 +16,12 @@ IUSE=""
S="${WORKDIR}"/tRNAscan-SE-1.3.1/
+PATCHES=(
+ "${FILESDIR}"/${P}-ldflags.patch
+)
+
src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-ldflags.patch
+ default
sed \
-e "s:BINDIR = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \
-e "s:LIBDIR = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/trnascan-se/
@ 2017-04-29 18:49 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2017-04-29 18:49 UTC (permalink / raw
To: gentoo-commits
commit: 529e06ea7c5927e07c85bd485067b32842ad14ad
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Apr 29 18:35:40 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Apr 29 18:49:15 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=529e06ea
sci-biology/trnascan-se: Drop old
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/trnascan-se/Manifest | 1 -
sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild | 44 ----------------------
2 files changed, 45 deletions(-)
diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest
index b82cf548c77..56b13cc497e 100644
--- a/sci-biology/trnascan-se/Manifest
+++ b/sci-biology/trnascan-se/Manifest
@@ -1,2 +1 @@
-DIST trnascan-se-1.23.tar.bz2 482202 SHA256 a1d18a0b9decf4a93fa6cf02fb5867367729449fc8e47e3749c91678fc1f344a SHA512 4977febcecf8344fb77aad2eeb278637aebdb1d995fd26823e459b3767d4f40b20f57d343092cc2cb8024b0ccc385879f4b6406c69022f848aa1df0acf1a68d8 WHIRLPOOL 978328857eaef5666fcf38c22afabfb796984b5fa52a02a7167b653164ba0bc32fcb52d35159eef83732046245c598426739cd4ed63bf259ea85130dda17dd70
DIST trnascan-se-1.31.tar.gz 740960 SHA256 862924d869453d1c111ba02f47d4cd86c7d6896ff5ec9e975f1858682282f316 SHA512 ba55bc8dfa7e5aee9c9a86c135a55b767cda083b74668bd9af4aaaeb693f9c3a17dc8bade5793de12b775564f09fbb861b0ab4f25bf83ccb0954fecd01bb328d WHIRLPOOL aef8b9f8d44799bac134a36af45374cdaba4b30c041e71e3095252aa8272fe9bd0aa76091211ac270ad609f67f388d577a83ec2ed2433997963fd5708c5b6665
diff --git a/sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild b/sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild
deleted file mode 100644
index c16a96cc551..00000000000
--- a/sci-biology/trnascan-se/trnascan-se-1.23-r2.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="3"
-
-inherit eutils multilib toolchain-funcs
-
-DESCRIPTION="tRNA detection in large-scale genome sequences"
-HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE=""
-
-RDEPEND="dev-lang/perl"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-glibc-2.10.patch
- epatch "${FILESDIR}"/${P}-ldflags.patch
- sed -e "s%BINDIR = \$(HOME)/bin%BINDIR = ${EPREFIX}/usr/bin%" \
- -e "s%LIBDIR = \$(HOME)/lib/tRNAscan-SE%LIBDIR = ${EPRFIX}/usr/$(get_libdir)/${PN}%" \
- -e "s%MANDIR = \$(HOME)/man%MANDIR = ${EPREFIX}/usr/share/man%" \
- -e "s%CC = gcc%CC = $(tc-getCC)%" \
- -e "s%CFLAGS = -O%CFLAGS = ${CFLAGS}%" \
- -i Makefile || die
-}
-
-src_install() {
- mv tRNAscan-SE.man tRNAscan-SE.man.1 || die
- dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 || die
- doman tRNAscan-SE.man.1 || die
- dodoc MANUAL README Release.history || die
- insinto /usr/$(get_libdir)/${PN}/
- doins *.cm gcode.* Dsignal TPCsignal || die
- insinto /usr/share/doc/${PF}
- doins Manual.ps || die
-}
-
-src_test() {
- make PATH="${S}:${PATH}" testrun || die
-}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/trnascan-se/
@ 2022-07-02 23:38 Sam James
0 siblings, 0 replies; 3+ messages in thread
From: Sam James @ 2022-07-02 23:38 UTC (permalink / raw
To: gentoo-commits
commit: 24345bb7834073b0027c28b890a36ed5ffd35a12
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 2 23:38:32 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sat Jul 2 23:38:32 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=24345bb7
sci-biology/trnascan-se: update EAPI 6 -> 8
Closes: https://bugs.gentoo.org/710970
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild | 53 ++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild b/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild
new file mode 100644
index 000000000000..cbbcb5f0e11e
--- /dev/null
+++ b/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit perl-functions toolchain-funcs
+
+DESCRIPTION="tRNA detection in large-scale genome sequences"
+HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
+SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}"/tRNAscan-SE-1.3.1/
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+PATCHES=(
+ "${FILESDIR}"/${P}-ldflags.patch
+)
+
+src_prepare() {
+ default
+
+ sed \
+ -e "s:BINDIR = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \
+ -e "s:LIBDIR = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \
+ -e "s:MANDIR = \$(HOME)/man:MANDIR = ${EPREFIX}/usr/share/man:" \
+ -e "s:CC = gcc:CC = $(tc-getCC):" \
+ -e "s;CFLAGS = -O;CFLAGS = ${CFLAGS};" \
+ -i Makefile || die
+
+ perl_set_version
+}
+
+src_test() {
+ emake PATH="${S}:${PATH}" testrun
+}
+
+src_install() {
+ dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4
+
+ newman tRNAscan-SE.man tRNAscan-SE.man.1
+
+ dodoc MANUAL README Release.history
+
+ insinto /usr/share/${PN}/
+ doins *.cm gcode.* Dsignal TPCsignal
+
+ dodoc Manual.ps
+
+ insinto ${VENDOR_LIB}
+ doins -r tRNAscanSE
+}
^ permalink raw reply related [flat|nested] 3+ messages in thread
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