From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id A9FE5139694 for ; Tue, 11 Apr 2017 08:41:48 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id BA4F821C06A; Tue, 11 Apr 2017 08:41:45 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 95F5021C06A for ; Tue, 11 Apr 2017 08:41:45 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id DC85B341586 for ; Tue, 11 Apr 2017 08:41:43 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 3D46F742C for ; Tue, 11 Apr 2017 08:41:42 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1491900088.ad511c8fb80754d29a9fa8e2b10e87be87d073ad.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild X-VCS-Directories: sci-biology/ncbi-tools++/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: ad511c8fb80754d29a9fa8e2b10e87be87d073ad X-VCS-Branch: master Date: Tue, 11 Apr 2017 08:41:42 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 52447a72-8cb1-4929-8f37-a37999731297 X-Archives-Hash: ba4df2f0a527bf97f7cccc48c065a7a4 commit: ad511c8fb80754d29a9fa8e2b10e87be87d073ad Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue Apr 11 08:41:28 2017 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue Apr 11 08:41:28 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad511c8f sci-biology/ncbi-tools++: add note on idfetch collision by upstream Package-Manager: Portage-2.3.5, Repoman-2.3.2 sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild index ec3852d76..3f1fc7bd1 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild @@ -362,6 +362,12 @@ src_install() { mv -f "${ED}"/usr/bin/test_regexp "${ED}"/usr/bin/test_regexp+ # drop the eventually mistakenly compiled binaries mv "${ED}"/usr/bin/vecscreen "${ED}"/usr/bin/vecscreen+ mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop+ + # + # idfetch collides with idfetch from ncbi-tools-2.2.26 + # Although the two idfetch implementations do deliberately have several + # options in common, the C++ version is not yet a full drop-in replacement + # for the C version (and will never entirely be, due to fundamental + # differences between the two toolkits' argument-parsing conventions). mv "${ED}"/usr/bin/idfetch "${ED}"/usr/bin/idfetch+ # new in ncbi-tools++-18.0.0 echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}