[gentoo-commits] proj/sci:master commit in: sci-libs/lib2bit/files/, sci-libs/lib2bit/

[gentoo-commits] proj/sci:master commit in: sci-libs/lib2bit/files/, sci-libs/lib2bit/

[Martin Mokrejs]

commit:     d891bab03c2c5958cfe10d3e9f53d3c81fa59d09
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 31 20:29:38 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 31 20:29:38 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d891bab0

sci-libs/lib2bit: add a new library to be eventually used through dev-pyton/py2bit

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 .../files/lib2bit-0.2.1_respect_DESTDIR.patch      | 11 ++++++++++
 sci-libs/lib2bit/lib2bit-0.2.1.ebuild              | 24 ++++++++++++++++++++++
 sci-libs/lib2bit/metadata.xml                      | 12 +++++++++++
 3 files changed, 47 insertions(+)

diff --git a/sci-libs/lib2bit/files/lib2bit-0.2.1_respect_DESTDIR.patch b/sci-libs/lib2bit/files/lib2bit-0.2.1_respect_DESTDIR.patch
new file mode 100644
index 000000000..cc0cbd536
--- /dev/null
+++ b/sci-libs/lib2bit/files/lib2bit-0.2.1_respect_DESTDIR.patch
@@ -0,0 +1,11 @@
+--- lib2bit-0.2.1/Makefile.ori	2017-03-31 22:09:48.387098439 +0200
++++ lib2bit-0.2.1/Makefile	2017-03-31 22:10:29.889020564 +0200
+@@ -8,7 +8,7 @@
+ LDLIBS =
+ INCLUDES = 
+ 
+-prefix = /usr/local
++prefix = ${DESTDIR}/usr/local
+ includedir = $(prefix)/include
+ libdir = $(exec_prefix)/lib
+ 

diff --git a/sci-libs/lib2bit/lib2bit-0.2.1.ebuild b/sci-libs/lib2bit/lib2bit-0.2.1.ebuild
new file mode 100644
index 000000000..a2029767d
--- /dev/null
+++ b/sci-libs/lib2bit/lib2bit-0.2.1.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit eutils
+
+DESCRIPTION="C library for accessing 2bit files"
+HOMEPAGE="https://github.com/dpryan79/lib2bit"
+SRC_URI="https://github.com/dpryan79/lib2bit/archive/0.2.1.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_prepare(){
+	epatch "${FILESDIR}"/${P}_respect_DESTDIR.patch
+	default
+}

diff --git a/sci-libs/lib2bit/metadata.xml b/sci-libs/lib2bit/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-libs/lib2bit/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-libs/lib2bit/files/, sci-libs/lib2bit/

[Benda XU]

commit:     d571c5ec3dfe993c302483ee03b9276a6da8a9a4
Author:     Jiajie Chen <noc <AT> jiegec <DOT> ac <DOT> cn>
AuthorDate: Fri Mar 20 01:56:27 2020 +0000
Commit:     Benda XU <heroxbd <AT> gentoo <DOT> org>
CommitDate: Fri Mar 20 05:14:49 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d571c5ec

sci-libs/lib2bit: fix testing and qa warnings

Closes: https://github.com/gentoo/sci/pull/949
Package-Manager: Portage-2.3.88, Repoman-2.3.18
Signed-off-by: Jiajie Chen <noc <AT> jiegec.ac.cn>
Signed-off-by: Benda Xu <heroxbd <AT> gentoo.org>

 .../files/lib2bit-0.2.1_respect_LDFLAGS.patch      | 11 +++++++++++
 .../files/lib2bit-0.2.1_test_support_python3.patch | 11 +++++++++++
 sci-libs/lib2bit/lib2bit-0.2.1.ebuild              | 23 +++++++++++-----------
 3 files changed, 34 insertions(+), 11 deletions(-)

diff --git a/sci-libs/lib2bit/files/lib2bit-0.2.1_respect_LDFLAGS.patch b/sci-libs/lib2bit/files/lib2bit-0.2.1_respect_LDFLAGS.patch
new file mode 100644
index 000000000..92a5b5d43
--- /dev/null
+++ b/sci-libs/lib2bit/files/lib2bit-0.2.1_respect_LDFLAGS.patch
@@ -0,0 +1,11 @@
+--- lib2bit-0.2.1/Makefile.ori	2020-03-19 11:41:21.896527937 +0000
++++ lib2bit-0.2.1/Makefile	2020-03-19 11:41:00.339977405 +0000
+@@ -4,7 +4,7 @@
+ CFLAGS ?= -g -Wall -O3
+ LIBS =
+ EXTRA_CFLAGS_PIC = -fpic
+-LDFLAGS =
++LDFLAGS ?=
+ LDLIBS =
+ INCLUDES = 
+ 

diff --git a/sci-libs/lib2bit/files/lib2bit-0.2.1_test_support_python3.patch b/sci-libs/lib2bit/files/lib2bit-0.2.1_test_support_python3.patch
new file mode 100644
index 000000000..2cee88ada
--- /dev/null
+++ b/sci-libs/lib2bit/files/lib2bit-0.2.1_test_support_python3.patch
@@ -0,0 +1,11 @@
+--- lib2bit-0.2.1/test/test.py.ori	2020-03-19 11:28:53.301344896 +0000
++++ lib2bit-0.2.1/test/test.py	2020-03-19 11:28:11.968283978 +0000
+@@ -14,7 +14,7 @@
+     p2 = Popen(["md5sum"], stdin=p1.stdout, stdout=PIPE)
+ except:
+     p2 = Popen(["md5"], stdin=p1.stdout, stdout=PIPE)
+-md5sum = p2.communicate()[0].strip().split()[0]
++md5sum = p2.communicate()[0].strip().split()[0].decode('utf-8')
+ assert(md5sum == "0274c32c7f3dd75e8991f6107dca6a5f")
+ 
+ print("Passed!")

diff --git a/sci-libs/lib2bit/lib2bit-0.2.1.ebuild b/sci-libs/lib2bit/lib2bit-0.2.1.ebuild
index c547dcca9..808c97b21 100644
--- a/sci-libs/lib2bit/lib2bit-0.2.1.ebuild
+++ b/sci-libs/lib2bit/lib2bit-0.2.1.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 inherit eutils
 
 DESCRIPTION="C library for accessing 2bit files"
 HOMEPAGE="https://github.com/dpryan79/lib2bit"
-SRC_URI="https://github.com/dpryan79/lib2bit/archive/0.2.1.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/dpryan79/lib2bit/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="MIT"
 SLOT="0"
@@ -17,15 +17,16 @@ IUSE="static"
 DEPEND=""
 RDEPEND="${DEPEND}"
 
-src_prepare(){
-	default
-	epatch "${FILESDIR}"/${P}_respect_DESTDIR.patch
-	sed -e 's#/usr/local#/usr#' -i Makefile || die
-}
+PATCHES=(
+	"${FILESDIR}"/${P}_respect_LDFLAGS.patch
+	"${FILESDIR}"/${P}_test_support_python3.patch
+)
 
 src_install(){
-	emake DESTDIR="${ED}" install
-	if not use static; then
-		rm "${ED}"/usr/lib/lib2bit.a || die
+	dodoc README.md
+	dolib.so lib2bit.so
+	doheader 2bit.h
+	if use static; then
+		dolib.a lib2bit.a
 	fi
 }