[gentoo-commits] proj/sci:master commit in: sci-libs/libStatGen/

[gentoo-commits] proj/sci:master commit in: sci-libs/libStatGen/

[Martin Mokrejs]

commit:     b466093993c5deb44025419e3c969e4555b5f3dc
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Feb 24 13:59:57 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Feb 24 13:59:57 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b4660939

sci-libs/libStatGen: a standalone static library

This is to be used by sci-biology/verifyBamID but it requires some of
the Makefiles from libStatGen source tree, and likely headers as well.
Seem slike a lot of work to rewamp the build requirements.

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-libs/libStatGen/libStatGen-1.0.13.ebuild | 23 +++++++++++++++++++++++
 sci-libs/libStatGen/metadata.xml             | 12 ++++++++++++
 2 files changed, 35 insertions(+)

diff --git a/sci-libs/libStatGen/libStatGen-1.0.13.ebuild b/sci-libs/libStatGen/libStatGen-1.0.13.ebuild
new file mode 100644
index 000000000..e822dc5f8
--- /dev/null
+++ b/sci-libs/libStatGen/libStatGen-1.0.13.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="Set of classes for creating statistical genetic programs"
+HOMEPAGE="https://github.com/statgen/libStatGen"
+SRC_URI="https://github.com/statgen/libStatGen/archive/v1.0.13.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="sys-libs/zlib
+	dev-libs/openssl"
+RDEPEND="${DEPEND}"
+
+src_install(){
+	default
+	dolib libStatGen.* # package only makes a static library
+}

diff --git a/sci-libs/libStatGen/metadata.xml b/sci-libs/libStatGen/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-libs/libStatGen/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-libs/libStatGen/

[Justin Lecher]

commit:     f413c1cbe5af50082dfae5814049b077dc330cfe
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 26 08:51:22 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar 26 08:51:22 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f413c1cb

sci-libs/libStatGen: Add missing SLOT operator

Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-libs/libStatGen/libStatGen-1.0.13.ebuild | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/sci-libs/libStatGen/libStatGen-1.0.13.ebuild b/sci-libs/libStatGen/libStatGen-1.0.13.ebuild
index 28bda4871..9a2c55db7 100644
--- a/sci-libs/libStatGen/libStatGen-1.0.13.ebuild
+++ b/sci-libs/libStatGen/libStatGen-1.0.13.ebuild
@@ -12,8 +12,7 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
 
-DEPEND="sys-libs/zlib
-	dev-libs/openssl"
+DEPEND="dev-libs/openssl:0="
 RDEPEND="${DEPEND}"
 
 src_install(){

[gentoo-commits] proj/sci:master commit in: sci-libs/libStatGen/

[Andrew Ammerlaan]

commit:     a3f6cb79d7a26d904f624187794afd82305b5b50
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar  4 15:08:00 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar  4 15:08:00 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a3f6cb79

sci-libs/libStatGen: cleanup old

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-libs/libStatGen/libStatGen-1.0.13.ebuild | 21 ---------------------
 sci-libs/libStatGen/libStatGen-1.0.14.ebuild | 21 ---------------------
 2 files changed, 42 deletions(-)

diff --git a/sci-libs/libStatGen/libStatGen-1.0.13.ebuild b/sci-libs/libStatGen/libStatGen-1.0.13.ebuild
deleted file mode 100644
index fa9f58f5c..000000000
--- a/sci-libs/libStatGen/libStatGen-1.0.13.ebuild
+++ /dev/null
@@ -1,21 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Set of classes for creating statistical genetic programs"
-HOMEPAGE="https://github.com/statgen/libStatGen"
-SRC_URI="https://github.com/statgen/libStatGen/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="dev-libs/openssl:0="
-RDEPEND="${DEPEND}"
-
-src_install(){
-	default
-	dolib libStatGen.* # package only makes a static library
-}

diff --git a/sci-libs/libStatGen/libStatGen-1.0.14.ebuild b/sci-libs/libStatGen/libStatGen-1.0.14.ebuild
deleted file mode 100644
index fa9f58f5c..000000000
--- a/sci-libs/libStatGen/libStatGen-1.0.14.ebuild
+++ /dev/null
@@ -1,21 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Set of classes for creating statistical genetic programs"
-HOMEPAGE="https://github.com/statgen/libStatGen"
-SRC_URI="https://github.com/statgen/libStatGen/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="dev-libs/openssl:0="
-RDEPEND="${DEPEND}"
-
-src_install(){
-	default
-	dolib libStatGen.* # package only makes a static library
-}

[gentoo-commits] proj/sci:master commit in: sci-libs/libStatGen/

[Andrew Ammerlaan]

commit:     a61033300fd8848a1a2d0acd711408fd8daa0bb3
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar  4 15:06:45 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar  4 15:06:45 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a6103330

sci-libs/libStatGen: version bump 1.0.15

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-libs/libStatGen/libStatGen-1.0.15.ebuild | 30 ++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/sci-libs/libStatGen/libStatGen-1.0.15.ebuild b/sci-libs/libStatGen/libStatGen-1.0.15.ebuild
new file mode 100644
index 000000000..fba3dde57
--- /dev/null
+++ b/sci-libs/libStatGen/libStatGen-1.0.15.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DOCS_BUILDER="doxygen"
+DOCS_DEPEND="media-gfx/graphviz"
+
+inherit docs
+
+DESCRIPTION="Set of classes for creating statistical genetic programs"
+HOMEPAGE="https://github.com/statgen/libStatGen"
+SRC_URI="https://github.com/statgen/libStatGen/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="dev-libs/openssl:0="
+RDEPEND="${DEPEND}"
+
+src_compile() {
+	default
+	docs_compile
+}
+
+src_install(){
+	default
+	dolib.a libStatGen.a # package only makes a static library
+}