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From: "Justin Lecher" <jlec@gentoo.org>
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Message-ID: <1490517316.9aa9128dbcee64dbd1a31cbb9f2c378c822a7ae3.jlec@gentoo>
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/inGAP-bin/, profiles/
X-VCS-Repository: proj/sci
X-VCS-Files: profiles/package.mask sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild sci-biology/inGAP-bin/metadata.xml
X-VCS-Directories: sci-biology/inGAP-bin/ profiles/
X-VCS-Committer: jlec
X-VCS-Committer-Name: Justin Lecher
X-VCS-Revision: 9aa9128dbcee64dbd1a31cbb9f2c378c822a7ae3
X-VCS-Branch: master
Date: Sun, 26 Mar 2017 08:37:37 +0000 (UTC)
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commit: 9aa9128dbcee64dbd1a31cbb9f2c378c822a7ae3
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 26 08:35:16 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar 26 08:35:16 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9aa9128d
Drop masked package - sci-biology/inGAP-bin
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
profiles/package.mask | 1 -
sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild | 40 ----------------------------
sci-biology/inGAP-bin/metadata.xml | 15 -----------
3 files changed, 56 deletions(-)
diff --git a/profiles/package.mask b/profiles/package.mask
index 29b07cf02..b3f8b7f46 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -39,7 +39,6 @@ sci-mathematics/scilab
# Justin Lecher <jlec@gentoo.org> (9 Feb 2016)
# rev dep masked
-sci-biology/inGAP-bin
# Andreas K. Huettel <dilfridge@gentoo.org> (1 Nov 2014)
# Lab::Instrument and Lab::Tools provided as separate packages
diff --git a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild b/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild
deleted file mode 100644
index c6f691422..000000000
--- a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-MY_PV="3_0_1"
-S="${WORKDIR}"/inGAP_"${MY_PV}"
-
-inherit java-utils-2
-
-DESCRIPTION="Detect SNPs and indels from Next-gen sequences using a Bayesian algorithm"
-HOMEPAGE="
- http://sites.google.com/site/nextgengenomics/ingap
- http://sourceforge.net/projects/ingap/"
-SRC_URI="http://sourceforge.net/projects/ingap/files/ingap/v"${PV}"/inGAP_"${MY_PV}".tgz"
-
-LICENSE="LGPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND=">=virtual/jre-1.7:*"
-RDEPEND="${DEPEND}
- dev-java/jfreechart
- dev-java/swing-layout
- dev-java/jcommon
- dev-java/itext
- dev-java/bytecode
- sci-biology/biojava
- dev-java/absolutelayout" # gnujaxp ?
-
-src_install(){
- java-pkg_dojar inGAP.jar
- java-pkg_dolauncher inGAP --jar inGAP.jar
- # dobin external/bin/{primer3_core, run_cpp, trf}
- newdoc manual.pdf inGAP_Manual.pdf
- dodoc doc/manual.htm
- insinto /usr/share/inGAP/manual_files
- doins doc/manual_files/*.png
-}
diff --git a/sci-biology/inGAP-bin/metadata.xml b/sci-biology/inGAP-bin/metadata.xml
deleted file mode 100644
index 4e706cb4c..000000000
--- a/sci-biology/inGAP-bin/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">ingap</remote-id>
- </upstream>
-</pkgmetadata>