From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id D48EE139694 for ; Thu, 23 Mar 2017 18:28:31 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 3ACDA21C0AA; Thu, 23 Mar 2017 18:28:31 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 18D4921C0AA for ; Thu, 23 Mar 2017 18:28:30 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id AE7BD34162D for ; Thu, 23 Mar 2017 18:28:29 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 776ED7271 for ; Thu, 23 Mar 2017 18:28:28 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1490293688.0ece3b3803a4d4be8aeeb140f51b3b46dee6ee6f.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild X-VCS-Directories: sci-biology/ncbi-tools++/files/ sci-biology/ncbi-tools++/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 0ece3b3803a4d4be8aeeb140f51b3b46dee6ee6f X-VCS-Branch: master Date: Thu, 23 Mar 2017 18:28:28 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 010c6668-aa9d-433b-b78c-e8bcb4cf2fa1 X-Archives-Hash: 806db82daa37c2f235f91752049efa7e commit: 0ece3b3803a4d4be8aeeb140f51b3b46dee6ee6f Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Thu Mar 23 18:28:08 2017 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Mar 23 18:28:08 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ece3b38 sci-biology/ncbi-tools++: yet another linking fix Package-Manager: Portage-2.3.3, Repoman-2.3.1 .../ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch | 11 +++++++++++ sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 1 + 2 files changed, 12 insertions(+) diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch new file mode 100644 index 000000000..e495c9645 --- /dev/null +++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch @@ -0,0 +1,11 @@ +--- ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app.ori 2017-03-23 19:24:31.534280319 +0100 ++++ ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app 2017-03-23 19:25:14.395360214 +0100 +@@ -2,7 +2,7 @@ + + APP = convert_seq + SRC = convert_seq +-LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite \ ++LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite variation_utils \ + $(OBJREAD_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil tables xregexp \ + $(PCRE_LIB) $(OBJMGR_LIBS) + diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild index 7a70e8f5e..ce5b4ddb8 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild @@ -118,6 +118,7 @@ src_prepare() { "${FILESDIR}"/${P}-fix-apps-blast-linking.patch "${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch "${FILESDIR}"/${P}-fix-app-compartp-linking.patch + "${FILESDIR}"/${P}-fix-app-convert_seq-linking.patch ) #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch epatch ${PATCHES[@]}