From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 1E469139694 for ; Wed, 8 Mar 2017 22:17:11 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 6EAD4E0CEA; Wed, 8 Mar 2017 22:17:10 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 4B178E0CE6 for ; Wed, 8 Mar 2017 22:17:05 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 709423416AA for ; Wed, 8 Mar 2017 22:16:59 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 90CEE6185 for ; Wed, 8 Mar 2017 22:16:56 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1489011387.1aac1736236bb22fb135f1154a4fa250a8bbe05a.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalw-mpi/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild sci-biology/clustalw-mpi/clustalw-mpi-0.13-r2.ebuild X-VCS-Directories: sci-biology/clustalw-mpi/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: 1aac1736236bb22fb135f1154a4fa250a8bbe05a X-VCS-Branch: master Date: Wed, 8 Mar 2017 22:16:56 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: e970f254-df6b-46c3-8f75-ffa3cd99dda5 X-Archives-Hash: 0fe488fa36e8e8b89bc7b23b628e4d01 commit: 1aac1736236bb22fb135f1154a4fa250a8bbe05a Author: David Seifert gentoo org> AuthorDate: Wed Mar 8 21:35:40 2017 +0000 Commit: David Seifert gentoo org> CommitDate: Wed Mar 8 22:16:27 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1aac1736 sci-biology/clustalw-mpi: Modernise to EAPI 6 Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165 ...lw-mpi-0.13-r1.ebuild => clustalw-mpi-0.13-r2.ebuild} | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r2.ebuild similarity index 85% rename from sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild rename to sci-biology/clustalw-mpi/clustalw-mpi-0.13-r2.ebuild index 7d68b61be5e..76d3b80cde3 100644 --- a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild +++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r2.ebuild @@ -1,31 +1,35 @@ # Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=4 +EAPI=6 -inherit eutils toolchain-funcs +inherit toolchain-funcs DESCRIPTION="An MPI implemention of the ClustalW general purpose multiple alignment algorithm" HOMEPAGE="http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php" SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz" +LICENSE="public-domain" SLOT="0" KEYWORDS="~amd64 ~x86" -LICENSE="public-domain" IUSE="mpi_njtree static_pairalign" DEPEND="virtual/mpi" RDEPEND="${DEPEND}" +PATCHES=( "${FILESDIR}"/${PV}-gentoo.patch ) + src_prepare() { - epatch "${FILESDIR}"/${PV}-gentoo.patch + default + if use mpi_njtree; then sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \ - die "Failed to configure MPI code for NJ trees." + die "Failed to configure MPI code for NJ trees" fi + if use static_pairalign; then sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \ - die "Failed to configure static scheduling for pair alignments." + die "Failed to configure static scheduling for pair alignments" fi }