[gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalw-mpi/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalw-mpi/

[David Seifert]

commit:     6a11bee690bba5d3de48be84eca0d7c90508f841
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Feb  6 20:48:02 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Feb  6 21:26:17 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6a11bee6

sci-biology/clustalw-mpi: Fix overlong DESCRIPTION

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3856

 sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild
index 11f1e57..13b04ed 100644
--- a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild
+++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -6,7 +6,7 @@ EAPI=4
 
 inherit eutils toolchain-funcs
 
-DESCRIPTION="A parallel (MPI) implemention of the Clustal-W general purpose multiple alignment algorithm"
+DESCRIPTION="An MPI implemention of the ClustalW general purpose multiple alignment algorithm"
 HOMEPAGE="http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php"
 SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz"
 

[gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalw-mpi/

[David Seifert]

commit:     1aac1736236bb22fb135f1154a4fa250a8bbe05a
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Wed Mar  8 21:35:40 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed Mar  8 22:16:27 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1aac1736

sci-biology/clustalw-mpi: Modernise to EAPI 6

Package-Manager: Portage-2.3.4, Repoman-2.3.2
Closes: https://github.com/gentoo/gentoo/pull/4165

 ...lw-mpi-0.13-r1.ebuild => clustalw-mpi-0.13-r2.ebuild} | 16 ++++++++++------
 1 file changed, 10 insertions(+), 6 deletions(-)

diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r2.ebuild
similarity index 85%
rename from sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild
rename to sci-biology/clustalw-mpi/clustalw-mpi-0.13-r2.ebuild
index 7d68b61be5e..76d3b80cde3 100644
--- a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r1.ebuild
+++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r2.ebuild
@@ -1,31 +1,35 @@
 # Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=4
+EAPI=6
 
-inherit eutils toolchain-funcs
+inherit toolchain-funcs
 
 DESCRIPTION="An MPI implemention of the ClustalW general purpose multiple alignment algorithm"
 HOMEPAGE="http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php"
 SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz"
 
+LICENSE="public-domain"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-LICENSE="public-domain"
 IUSE="mpi_njtree static_pairalign"
 
 DEPEND="virtual/mpi"
 RDEPEND="${DEPEND}"
 
+PATCHES=( "${FILESDIR}"/${PV}-gentoo.patch )
+
 src_prepare() {
-	epatch "${FILESDIR}"/${PV}-gentoo.patch
+	default
+
 	if use mpi_njtree; then
 		sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \
-			die "Failed to configure MPI code for NJ trees."
+			die "Failed to configure MPI code for NJ trees"
 	fi
+
 	if use static_pairalign; then
 		sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \
-			die "Failed to configure static scheduling for pair alignments."
+			die "Failed to configure static scheduling for pair alignments"
 	fi
 }