[gentoo-commits] repo/gentoo:master commit in: sci-biology/elph/files/, sci-biology/elph/

["David Seifert" <soap@gentoo.org>]

commit:     c7f45dbb5043e60a8b4c0a091fcb0465ffbbef50
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Wed Mar  8 18:46:35 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed Mar  8 18:47:18 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c7f45dbb

sci-biology/elph: Modernise to EAPI 6

Package-Manager: Portage-2.3.4, Repoman-2.3.2

 sci-biology/elph/elph-1.0.1-r1.ebuild              | 31 ++++++++++++
 .../elph/files/elph-1.0.1-fix-build-system.patch   | 55 ++++++++++++++++++++++
 2 files changed, 86 insertions(+)

diff --git a/sci-biology/elph/elph-1.0.1-r1.ebuild b/sci-biology/elph/elph-1.0.1-r1.ebuild
new file mode 100644
index 00000000000..c166dd93e41
--- /dev/null
+++ b/sci-biology/elph/elph-1.0.1-r1.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Estimated Locations of Pattern Hits - Motif finder program"
+LICENSE="Artistic"
+HOMEPAGE="http://cbcb.umd.edu/software/ELPH/"
+SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/elph/ELPH-${PV}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+
+S=${WORKDIR}/${PN^^}/sources
+
+PATCHES=( "${FILESDIR}/${PN}-1.0.1-fix-build-system.patch" )
+
+src_configure() {
+	tc-export CC CXX
+}
+
+src_install() {
+	dobin elph
+
+	cd "${WORKDIR}"/ELPH || die
+	dodoc VERSION
+	newdoc Readme.ELPH README
+}

diff --git a/sci-biology/elph/files/elph-1.0.1-fix-build-system.patch b/sci-biology/elph/files/elph-1.0.1-fix-build-system.patch
new file mode 100644
index 00000000000..9afbb68666d
--- /dev/null
+++ b/sci-biology/elph/files/elph-1.0.1-fix-build-system.patch
@@ -0,0 +1,55 @@
+Make build system respect user variables
+
+--- a/Makefile
++++ b/Makefile
+@@ -1,42 +1,26 @@
+-CLASSDIR := .
+-
+-# Directories to search for header files
+-SEARCHDIRS := -I- -I${CLASSDIR}
+-
+-
+-SYSTYPE :=     $(shell uname)
+-
+-# C compiler
+-
+-CC      := g++
+-CFLAGS  = -Wall ${SEARCHDIRS} -fno-exceptions -fno-rtti -D_REENTRANT -g
++my_CPPFLAGS = -D_REENTRANT -I.
+ 
+ %.o : %.c
+-	${CC} ${CFLAGS} -c $< -o $@
++	$(CC) -Wall $(CFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@
+ 
+ %.o : %.cc
+-	${CC} ${CFLAGS} -c $< -o $@
++	$(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@
+ 
+ %.o : %.C
+-	${CC} ${CFLAGS} -c $< -o $@
++	$(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@
+ 
+ %.o : %.cpp
+-	${CC} ${CFLAGS} -c $< -o $@
++	$(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@
+ 
+ %.o : %.cxx
+-	${CC} ${CFLAGS} -c $< -o $@
++	$(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@
+ 
+ # C/C++ linker
+-
+-LINKER    := g++
+-LDFLAGS    =
+-LOADLIBES := 
+-
+ .PHONY : all
+ all:    elph
+ 
+-elph:  ./elph.o ${CLASSDIR}/motif.o ${CLASSDIR}/GBase.o ${CLASSDIR}/GString.o ${CLASSDIR}/GArgs.o
+-	${LINKER} ${LDFLAGS} -o $@ ${filter-out %.a %.so, $^} ${LOADLIBES}
++elph: elph.o motif.o GBase.o GString.o GArgs.o
++	$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $@ $^
+ 
+ # target for removing all object files
+