* [gentoo-commits] repo/gentoo:master commit in: sci-biology/amos/
@ 2017-02-25 19:19 David Seifert
0 siblings, 0 replies; 4+ messages in thread
From: David Seifert @ 2017-02-25 19:19 UTC (permalink / raw
To: gentoo-commits
commit: 3b77d415ff6c692b3e08907626656f0112f22108
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 25 18:45:25 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Feb 25 19:18:26 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3b77d415
sci-biology/amos: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/amos/amos-3.1.0-r2.ebuild | 48 -----------------------------------
sci-biology/amos/amos-3.1.0.ebuild | 29 ---------------------
2 files changed, 77 deletions(-)
diff --git a/sci-biology/amos/amos-3.1.0-r2.ebuild b/sci-biology/amos/amos-3.1.0-r2.ebuild
deleted file mode 100644
index 91c1f69f97..0000000000
--- a/sci-biology/amos/amos-3.1.0-r2.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit flag-o-matic python-r1
-
-DESCRIPTION="A Modular, Open-Source whole genome assembler"
-HOMEPAGE="http://amos.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
- https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="qt4"
-
-DEPEND="qt4? ( dev-qt/qtcore:4 )"
-RDEPEND="${DEPEND}
- dev-perl/DBI
- dev-perl/Statistics-Descriptive
- sci-biology/mummer"
-
-PATCHES=(
- "${FILESDIR}"/${P}-gcc-4.7.patch
- "${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
- "${WORKDIR}"/${P}-fix-c++14.patch
- "${FILESDIR}"/${P}-qa-Wformat.patch
-)
-
-src_configure() {
- # prevent GCC 6 log pollution due to hash_map deprecation in C++11
- append-cxxflags -Wno-cpp
-
- default
-}
-
-src_compile() {
- emake -j1
-}
-
-src_install() {
- default
- python_replicate_script "${ED%/}/usr/bin/goBambus2"
-}
diff --git a/sci-biology/amos/amos-3.1.0.ebuild b/sci-biology/amos/amos-3.1.0.ebuild
deleted file mode 100644
index 945ec9f41b..0000000000
--- a/sci-biology/amos/amos-3.1.0.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-inherit eutils
-
-DESCRIPTION="A Modular, Open-Source whole genome assembler"
-HOMEPAGE="http://amos.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="qt4"
-
-DEPEND="qt4? ( dev-qt/qtcore:4 )"
-RDEPEND="${DEPEND}
- dev-perl/DBI
- dev-perl/Statistics-Descriptive
- sci-biology/mummer"
-
-MAKEOPTS+=" -j1"
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-gcc-4.7.patch
-}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/amos/
@ 2018-01-15 1:50 Andreas Sturmlechner
0 siblings, 0 replies; 4+ messages in thread
From: Andreas Sturmlechner @ 2018-01-15 1:50 UTC (permalink / raw
To: gentoo-commits
commit: e05cbf97c6f47ed2320818aedc0c23bc1387fbc8
Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 15 01:33:10 2018 +0000
Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Mon Jan 15 01:50:40 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e05cbf97
sci-biology/amos: Add missing USE=qt4 build switch
Package-Manager: Portage-2.3.19, Repoman-2.3.6
sci-biology/amos/amos-3.1.0-r3.ebuild | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/sci-biology/amos/amos-3.1.0-r3.ebuild b/sci-biology/amos/amos-3.1.0-r3.ebuild
index ab383a3b95a..33c30995b11 100644
--- a/sci-biology/amos/amos-3.1.0-r3.ebuild
+++ b/sci-biology/amos/amos-3.1.0-r3.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 )
-inherit autotools flag-o-matic python-single-r1
+inherit autotools flag-o-matic python-single-r1 qmake-utils
DESCRIPTION="A Modular, Open-Source whole genome assembler"
HOMEPAGE="http://amos.sourceforge.net/"
@@ -42,6 +42,11 @@ src_prepare() {
append-cxxflags -Wno-cpp
}
+src_configure() {
+ econf \
+ --with-qmake-qt4=$(usex qt4 $(qt4_get_bindir)/qmake no)
+}
+
src_install() {
default
python_fix_shebang "${ED%/}"/usr/bin/goBambus2
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/amos/
@ 2018-03-03 17:44 Andreas Sturmlechner
0 siblings, 0 replies; 4+ messages in thread
From: Andreas Sturmlechner @ 2018-03-03 17:44 UTC (permalink / raw
To: gentoo-commits
commit: c8849b8d8ee3b0f1ba02fb47681f1a4f72a4106f
Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 3 16:09:07 2018 +0000
Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sat Mar 3 17:44:08 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c8849b8d
sci-biology/amos: Drop old
Closes: https://bugs.gentoo.org/645140
Package-Manager: Portage-2.3.24, Repoman-2.3.6
sci-biology/amos/amos-3.1.0-r3.ebuild | 53 -----------------------------------
1 file changed, 53 deletions(-)
diff --git a/sci-biology/amos/amos-3.1.0-r3.ebuild b/sci-biology/amos/amos-3.1.0-r3.ebuild
deleted file mode 100644
index 33c30995b11..00000000000
--- a/sci-biology/amos/amos-3.1.0-r3.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit autotools flag-o-matic python-single-r1 qmake-utils
-
-DESCRIPTION="A Modular, Open-Source whole genome assembler"
-HOMEPAGE="http://amos.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
- https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="qt4"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="qt4? ( dev-qt/qtcore:4 )"
-RDEPEND="${DEPEND}
- ${PYTHON_DEPS}
- dev-perl/DBI
- dev-perl/Statistics-Descriptive
- sci-biology/mummer"
-
-PATCHES=(
- "${FILESDIR}"/${P}-gcc-4.7.patch
- "${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
- "${WORKDIR}"/${P}-fix-c++14.patch
- "${FILESDIR}"/${P}-qa-Wformat.patch
- "${FILESDIR}"/${P}-fix-build-system.patch
-)
-
-src_prepare() {
- default
- eautoreconf
-
- # prevent GCC 6 log pollution due
- # to hash_map deprecation in C++11
- append-cxxflags -Wno-cpp
-}
-
-src_configure() {
- econf \
- --with-qmake-qt4=$(usex qt4 $(qt4_get_bindir)/qmake no)
-}
-
-src_install() {
- default
- python_fix_shebang "${ED%/}"/usr/bin/goBambus2
-}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/amos/
@ 2018-03-03 17:44 Andreas Sturmlechner
0 siblings, 0 replies; 4+ messages in thread
From: Andreas Sturmlechner @ 2018-03-03 17:44 UTC (permalink / raw
To: gentoo-commits
commit: 86acc7ebf1e4ce5be9437507bed6e607a3bcfe6c
Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 3 16:08:26 2018 +0000
Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sat Mar 3 17:44:08 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=86acc7eb
sci-biology/amos: Drop USE=qt4
Bug: https://bugs.gentoo.org/645140
Package-Manager: Portage-2.3.24, Repoman-2.3.6
sci-biology/amos/amos-3.1.0-r4.ebuild | 52 +++++++++++++++++++++++++++++++++++
1 file changed, 52 insertions(+)
diff --git a/sci-biology/amos/amos-3.1.0-r4.ebuild b/sci-biology/amos/amos-3.1.0-r4.ebuild
new file mode 100644
index 00000000000..0dbcaffd81d
--- /dev/null
+++ b/sci-biology/amos/amos-3.1.0-r4.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit autotools flag-o-matic python-single-r1
+
+DESCRIPTION="A Modular, Open-Source whole genome assembler"
+HOMEPAGE="http://amos.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
+ https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ ${PYTHON_DEPS}
+ dev-perl/DBI
+ dev-perl/Statistics-Descriptive
+ sci-biology/mummer"
+
+PATCHES=(
+ "${FILESDIR}"/${P}-gcc-4.7.patch
+ "${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
+ "${WORKDIR}"/${P}-fix-c++14.patch
+ "${FILESDIR}"/${P}-qa-Wformat.patch
+ "${FILESDIR}"/${P}-fix-build-system.patch
+)
+
+src_prepare() {
+ default
+ eautoreconf
+
+ # prevent GCC 6 log pollution due
+ # to hash_map deprecation in C++11
+ append-cxxflags -Wno-cpp
+}
+
+src_configure() {
+ econf --with-qmake-qt4=no
+}
+
+src_install() {
+ default
+ python_fix_shebang "${ED%/}"/usr/bin/goBambus2
+}
^ permalink raw reply related [flat|nested] 4+ messages in thread
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